AlfalfaGEDB | MS.gene041113

M. sativa cultivar XinJiangDaYe / MS.gene041113

KEGG: -
GO: -
PFAM: PF04749.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041113.t1	XP_003611770.1	94.8	194	9	1	1	194	1	193	4.60E-99	370.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041113.t1	Q9LQU4	63.4	145	44	3	52	194	15	152	8.9e-51	201.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041113.t1	G7K803	94.8	194	9	1	1	194	1	193	3.3e-99	370.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene29964	MS.gene041113	PPI
MS.gene041113	MS.gene29965	PPI
MS.gene020495	MS.gene041113	PPI
MS.gene041113	MS.gene015684	PPI
MS.gene041113	MS.gene015683	PPI
MS.gene020496	MS.gene041113	PPI
MS.gene041113	MS.gene047654	PPI
MS.gene041113	MS.gene010381	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041113.t1	MTR_5g017650	97.938	194	3	1	1	194	1	193	2.73e-139	386
MS.gene041113.t1	MTR_8g104870	90.052	191	15	2	5	194	4	191	8.05e-111	314
MS.gene041113.t1	MTR_8g104890	59.794	194	53	5	1	194	1	169	9.04e-62	189
MS.gene041113.t1	MTR_4g086330	51.449	138	64	1	52	189	63	197	4.16e-47	153
MS.gene041113.t1	MTR_4g086320	54.386	114	49	1	52	165	50	160	7.45e-39	131
MS.gene041113.t1	MTR_8g104830	46.897	145	67	5	53	194	9	146	7.61e-39	130
MS.gene041113.t1	MTR_6g084940	39.506	162	84	4	33	194	2	149	2.21e-28	103
MS.gene041113.t1	MTR_2g101660	38.793	116	68	1	53	168	33	145	7.50e-25	95.5
MS.gene041113.t1	MTR_1g075550	50.407	123	53	3	46	168	9	123	8.47e-25	94.4
MS.gene041113.t1	MTR_2g101660	34.146	123	81	0	72	194	1	123	6.72e-21	84.0
MS.gene041113.t1	MTR_5g008240	35.294	153	70	8	52	189	82	220	7.99e-16	73.2
MS.gene041113.t1	MTR_5g008240	35.294	153	70	8	52	189	40	178	9.64e-16	72.0
MS.gene041113.t1	MTR_5g008240	35.294	153	70	8	52	189	106	244	1.49e-15	72.8
MS.gene041113.t1	MTR_5g008240	38.318	107	51	5	68	159	35	141	4.87e-12	62.0
MS.gene041113.t1	MTR_0172s0050	31.373	153	61	8	40	158	55	197	2.73e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041113.t1	AT1G14870	61.184	152	50	3	45	194	8	152	2.66e-62	190
MS.gene041113.t1	AT5G35525	59.333	150	52	3	47	194	10	152	1.69e-57	178
MS.gene041113.t1	AT1G14870	65.289	121	39	1	45	165	8	125	1.47e-54	170
MS.gene041113.t1	AT1G14880	55.769	156	60	3	41	194	3	151	4.93e-53	167
MS.gene041113.t1	AT1G49030	51.200	125	58	1	52	176	87	208	1.92e-41	139
MS.gene041113.t1	AT1G68610	52.740	146	61	4	52	194	18	158	1.20e-40	135
MS.gene041113.t1	AT3G18470	49.587	121	58	1	52	172	4	121	1.44e-39	132
MS.gene041113.t1	AT3G18460	50.420	119	55	2	53	171	54	168	1.47e-36	126
MS.gene041113.t1	AT3G18450	37.736	159	75	3	14	172	33	167	2.36e-34	120
MS.gene041113.t1	AT1G58320	44.056	143	70	4	52	194	16	148	4.90e-30	108
MS.gene041113.t1	AT1G68630	40.141	142	76	3	53	194	29	161	2.94e-27	101
MS.gene041113.t1	AT1G52200	38.333	120	71	1	53	172	53	169	8.16e-25	95.9
MS.gene041113.t1	AT1G52200	38.053	113	67	1	53	165	53	162	1.33e-21	87.8
MS.gene041113.t1	AT2G40935	36.585	123	58	6	52	158	46	164	8.14e-16	72.4
MS.gene041113.t1	AT2G40935	36.585	123	58	6	52	158	46	164	8.14e-16	72.4
MS.gene041113.t1	AT2G40935	36.585	123	58	6	52	158	46	164	8.14e-16	72.4
MS.gene041113.t1	AT2G40935	36.585	123	58	6	52	158	46	164	8.14e-16	72.4
MS.gene041113.t1	AT2G40935	36.585	123	58	6	52	158	46	164	8.14e-16	72.4
MS.gene041113.t1	AT2G40935	37.069	116	53	6	62	158	39	153	3.00e-14	68.2
MS.gene041113.t1	AT2G40935	37.736	106	49	5	69	158	36	140	6.70e-13	64.3
MS.gene041113.t1	AT2G40935	37.736	106	49	5	69	158	36	140	6.70e-13	64.3
MS.gene041113.t1	AT2G40935	37.736	106	49	5	69	158	36	140	6.70e-13	64.3
MS.gene041113.t1	AT2G45010	28.889	135	64	4	53	158	62	193	1.26e-11	62.0
MS.gene041113.t1	AT2G45010	28.889	135	64	4	53	158	16	147	1.27e-11	61.2

Find 54 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGCTGGCTTTCCTTGTTC+TGG	0.299814	5.2:-9801725	None:intergenic
TGGTGTCCATGTATCACTTT+TGG	0.308941	5.2:+9802060	MS.gene041113:CDS
ACATTGATTTGTTGTGTGAT+TGG	0.360755	5.2:+9802980	MS.gene041113:CDS
GGTTTAGGCGGAGGAGGAGG+AGG	0.361290	5.2:-9801836	None:intergenic
TTTCAGGTTGCATAACGTTC+TGG	0.367290	5.2:+9802040	MS.gene041113:intron
CATTGATTTGTTGTGTGATT+GGG	0.387322	5.2:+9802981	MS.gene041113:CDS
ATACCTGTGGCTGCTGCTGC+TGG	0.389577	5.2:-9801755	None:intergenic
CGTGGATTTAACATGGTCAT+TGG	0.401841	5.2:+9803145	MS.gene041113:CDS
GTTTGTATTCTTGCTTCTAT+CGG	0.402902	5.2:+9803011	MS.gene041113:CDS
GGCTTTCCTTGTTCTGGTGG+TGG	0.406957	5.2:-9801719	None:intergenic
TTTAGGCGGAGGAGGAGGAG+GGG	0.411929	5.2:-9801834	None:intergenic
TGTCAATGATTTCTGCAACT+TGG	0.449101	5.2:-9802083	None:intergenic
CTCATGCCATGTTCAACTGC+TGG	0.450375	5.2:-9803351	None:intergenic
GCTGCTGGTTGATTGTATGC+TGG	0.453996	5.2:-9801740	None:intergenic
TTGCAGCATGTGGTGCTAGT+GGG	0.454314	5.2:+9802948	MS.gene041113:intron
AGAGGTTTAGGCGGAGGAGG+AGG	0.475269	5.2:-9801839	None:intergenic
CGCCTAAACCTCTAGTTGAA+TGG	0.476264	5.2:+9801849	MS.gene041113:CDS
ACTAGAGGTTTAGGCGGAGG+AGG	0.486722	5.2:-9801842	None:intergenic
GCTGGCTTTCCTTGTTCTGG+TGG	0.504189	5.2:-9801722	None:intergenic
AACATGGCATGAGCCGTTGA+AGG	0.508025	5.2:+9803361	MS.gene041113:CDS
GACCATTCAACTAGAGGTTT+AGG	0.514640	5.2:-9801851	None:intergenic
GCGACAACAATACGGTTTGA+AGG	0.520833	5.2:+9803042	MS.gene041113:CDS
GTAGTGCTGTTGTAGCTCAC+TGG	0.527040	5.2:-9801779	None:intergenic
TCAAAGATGCGACAACAATA+CGG	0.532365	5.2:+9803034	MS.gene041113:CDS
TCAACTAGAGGTTTAGGCGG+AGG	0.533656	5.2:-9801845	None:intergenic
GTTTAGGCGGAGGAGGAGGA+GGG	0.534825	5.2:-9801835	None:intergenic
GGCGTAATCTGATGAGGCAC+CGG	0.545196	5.2:-9801813	None:intergenic
TTTGCAGCATGTGGTGCTAG+TGG	0.546904	5.2:+9802947	MS.gene041113:intron
CGACAACAATACGGTTTGAA+GGG	0.563752	5.2:+9803043	MS.gene041113:CDS
TGCAGCATGTGGTGCTAGTG+GGG	0.567597	5.2:+9802949	MS.gene041113:intron
AGAGCAGCAATCACAAAGAC+CGG	0.571890	5.2:-9801876	None:intergenic
CCTCTAGTTGAATGGTCCAC+CGG	0.573579	5.2:+9801857	MS.gene041113:CDS
CTTGATTCATTGCTGCTGCG+AGG	0.576909	5.2:+9803084	MS.gene041113:CDS
CAATGACCATGTTAAATCCA+CGG	0.577254	5.2:-9803144	None:intergenic
ACTTGGCCAAAAGTGATACA+TGG	0.588100	5.2:-9802066	None:intergenic
CAACCAGCAGCAGCAGCCAC+AGG	0.601150	5.2:+9801752	MS.gene041113:CDS
AATGTTGAGCAACGGACTAG+AGG	0.608581	5.2:+9803300	MS.gene041113:CDS
CCGGTGGACCATTCAACTAG+AGG	0.613837	5.2:-9801857	None:intergenic
AGCACTACATCAGCGTACTC+CGG	0.618111	5.2:+9801794	MS.gene041113:CDS
CTCACGATATTCTTGACACA+AGG	0.619435	5.2:-9803113	None:intergenic
TTGGAATGGATAGGGTGGCA+TGG	0.622573	5.2:+9803276	MS.gene041113:intron
CATTCAACTAGAGGTTTAGG+CGG	0.628932	5.2:-9801848	None:intergenic
AGTTGCAGAAATCATTGACA+AGG	0.629883	5.2:+9802086	MS.gene041113:CDS
TGAAAACCGTGGATTTAACA+TGG	0.630548	5.2:+9803138	MS.gene041113:CDS
ATGTATCCACCACCAGAACA+AGG	0.630755	5.2:+9801713	MS.gene041113:CDS
GGCATGGTAATGTTGAGCAA+CGG	0.640031	5.2:+9803292	MS.gene041113:CDS
AGGAGGGGCGTAATCTGATG+AGG	0.643098	5.2:-9801819	None:intergenic
ACAGCTCCAGCAGTTGAACA+TGG	0.645065	5.2:+9803345	MS.gene041113:CDS
GTAGCTCACTGGAATACCTG+TGG	0.652121	5.2:-9801768	None:intergenic
ACGGACTAGAGGAATAGCAA+TGG	0.686509	5.2:+9803311	MS.gene041113:CDS
GCAGCAATCACAAAGACCGG+TGG	0.689468	5.2:-9801873	None:intergenic
TATCGTGAGCTTGAAAACCG+TGG	0.692905	5.2:+9803127	MS.gene041113:CDS
GTTGCAGAAATCATTGACAA+GGG	0.697634	5.2:+9802087	MS.gene041113:CDS
TAGAAGCAAGAATACAAACA+AGG	0.701719	5.2:-9803007	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATATATTTATATATTTT+TGG	+	chr5.2:9802270-9802289	MS.gene041113:intron	0.0%
!!	TAATAGAAATAAGTTATTAA+TGG	+	chr5.2:9802391-9802410	MS.gene041113:intron	10.0%
!!!	TAATATAATTAGTTTAGTAA+AGG	-	chr5.2:9801941-9801960	None:intergenic	10.0%
!!!	TATATTAATTAATTTTCACT+TGG	+	chr5.2:9801995-9802014	MS.gene041113:intron	10.0%
!!	ACAATTGTTAAACAAATTAT+AGG	+	chr5.2:9802176-9802195	MS.gene041113:intron	15.0%
!!	ATTAATGGAAAAATGAATTA+GGG	+	chr5.2:9802406-9802425	MS.gene041113:intron	15.0%
!!	TAAACAAAATGATTTATGTT+TGG	-	chr5.2:9802766-9802785	None:intergenic	15.0%
!!	TATTAATGGAAAAATGAATT+AGG	+	chr5.2:9802405-9802424	MS.gene041113:intron	15.0%
!!!	ATTTGTTATTAGAAATGAAT+AGG	-	chr5.2:9802129-9802148	None:intergenic	15.0%
!!	AAAGAATGAGAATTGATAAA+GGG	-	chr5.2:9802675-9802694	None:intergenic	20.0%
!!	AGAAACAAATACTAAACTAA+TGG	-	chr5.2:9803201-9803220	None:intergenic	20.0%
!!	TAAAGAATGAGAATTGATAA+AGG	-	chr5.2:9802676-9802695	None:intergenic	20.0%
!!!	AAAGAGCACTTTTATTAAAT+TGG	-	chr5.2:9802221-9802240	None:intergenic	20.0%
!!!	AAGAGCACTTTTATTAAATT+GGG	-	chr5.2:9802220-9802239	None:intergenic	20.0%
!!!	ATAAAATTTGCATTTTGGAA+TGG	+	chr5.2:9803262-9803281	MS.gene041113:intron	20.0%
!!!	TAGCTATAAAATTTGCATTT+TGG	+	chr5.2:9803257-9803276	MS.gene041113:intron	20.0%
!!!	TTAGTTTAGTATTTGTTTCT+TGG	+	chr5.2:9803201-9803220	MS.gene041113:intron	20.0%
!	AATTGTTGTGATTCAACTTA+AGG	+	chr5.2:9802913-9802932	MS.gene041113:intron	25.0%
!	ACTAAAATAGACATAGCTAA+AGG	-	chr5.2:9802707-9802726	None:intergenic	25.0%
!!	ATTCAACTTAAGGATTTTTG+TGG	+	chr5.2:9802923-9802942	MS.gene041113:intron	25.0%
!!	CACTGTAGAGAATTAATTTT+GGG	-	chr5.2:9802466-9802485	None:intergenic	25.0%
!!	TGAGAGAATTGATTTATGTT+TGG	-	chr5.2:9802810-9802829	None:intergenic	25.0%
!!!	TTGCATATCTAATTTGTTTC+AGG	+	chr5.2:9802024-9802043	MS.gene041113:intron	25.0%
	ATAGTTATATAGCTAGCTGT+AGG	-	chr5.2:9801972-9801991	None:intergenic	30.0%
	ATATTCAAAGCTGAACCAAA+CGG	+	chr5.2:9802884-9802903	MS.gene041113:intron	30.0%
	GCAGAAAAGATTGAAAACAA+TGG	-	chr5.2:9803227-9803246	None:intergenic	30.0%
	GTTTGTATTCTTGCTTCTAT+CGG	+	chr5.2:9803011-9803030	MS.gene041113:CDS	30.0%
	TAGAAGCAAGAATACAAACA+AGG	-	chr5.2:9803010-9803029	None:intergenic	30.0%
!	ATTTGACTTCTTTGATGTGA+TGG	+	chr5.2:9802350-9802369	MS.gene041113:intron	30.0%
!	GCACTGTAGAGAATTAATTT+TGG	-	chr5.2:9802467-9802486	None:intergenic	30.0%
!!	ACATTGATTTGTTGTGTGAT+TGG	+	chr5.2:9802980-9802999	MS.gene041113:CDS	30.0%
!!	CATTGATTTGTTGTGTGATT+GGG	+	chr5.2:9802981-9803000	MS.gene041113:CDS	30.0%
!!!	ATTTGCATTTTGGAATGGAT+AGG	+	chr5.2:9803267-9803286	MS.gene041113:intron	30.0%
!!!	TGAACCAAACATGTTGTTTT+TGG	-	chr5.2:9802505-9802524	None:intergenic	30.0%
!!!	TTTGCATTTTGGAATGGATA+GGG	+	chr5.2:9803268-9803287	MS.gene041113:intron	30.0%
!!!	TTTTTGGCTAGAATTGCTTT+TGG	-	chr5.2:9802489-9802508	None:intergenic	30.0%
	AAAATGAATTAGGGCCTGTT+TGG	+	chr5.2:9802415-9802434	MS.gene041113:intron	35.0%
	AAACCTATACACGTTGTTCA+AGG	-	chr5.2:9802613-9802632	None:intergenic	35.0%
	AGTTGCAGAAATCATTGACA+AGG	+	chr5.2:9802086-9802105	MS.gene041113:CDS	35.0%
	ATGAATAGGTGTCTTACAAG+TGG	-	chr5.2:9802115-9802134	None:intergenic	35.0%
	ATTACCACATGATACTTGCA+AGG	+	chr5.2:9802323-9802342	MS.gene041113:intron	35.0%
	CAATGACCATGTTAAATCCA+CGG	-	chr5.2:9803147-9803166	None:intergenic	35.0%
	CTAGCCAAAAACAACATGTT+TGG	+	chr5.2:9802498-9802517	MS.gene041113:intron	35.0%
	GTTGCAGAAATCATTGACAA+GGG	+	chr5.2:9802087-9802106	MS.gene041113:CDS	35.0%
	TAATCCTTGCAAGTATCATG+TGG	-	chr5.2:9802330-9802349	None:intergenic	35.0%
	TATTCAAAGCTGAACCAAAC+GGG	+	chr5.2:9802885-9802904	MS.gene041113:intron	35.0%
	TCAAAGATGCGACAACAATA+CGG	+	chr5.2:9803034-9803053	MS.gene041113:CDS	35.0%
	TGAAAACCGTGGATTTAACA+TGG	+	chr5.2:9803138-9803157	MS.gene041113:CDS	35.0%
	TGTCAATGATTTCTGCAACT+TGG	-	chr5.2:9802086-9802105	None:intergenic	35.0%
!	TTCTAGAAAAGCTAGAAGCT+AGG	-	chr5.2:9802582-9802601	None:intergenic	35.0%
	ACAACAATTAAGTGCCCGTT+TGG	-	chr5.2:9802902-9802921	None:intergenic	40.0%
	ACTTGGCCAAAAGTGATACA+TGG	-	chr5.2:9802069-9802088	None:intergenic	40.0%
	AGCTAGGATTTGTAGCTTCA+TGG	-	chr5.2:9802566-9802585	None:intergenic	40.0%
	CATTCAACTAGAGGTTTAGG+CGG	-	chr5.2:9801851-9801870	None:intergenic	40.0%
	CGACAACAATACGGTTTGAA+GGG	+	chr5.2:9803043-9803062	MS.gene041113:CDS	40.0%
	CGTGGATTTAACATGGTCAT+TGG	+	chr5.2:9803145-9803164	MS.gene041113:CDS	40.0%
	CTCACGATATTCTTGACACA+AGG	-	chr5.2:9803116-9803135	None:intergenic	40.0%
	GACCATTCAACTAGAGGTTT+AGG	-	chr5.2:9801854-9801873	None:intergenic	40.0%
	TCTCCTTGAACAACGTGTAT+AGG	+	chr5.2:9802607-9802626	MS.gene041113:intron	40.0%
!	GCTTCATGGAGAATTGCTTT+TGG	-	chr5.2:9802552-9802571	None:intergenic	40.0%
!	TGGTGTCCATGTATCACTTT+TGG	+	chr5.2:9802060-9802079	MS.gene041113:CDS	40.0%
!!	TCATGGAGAATTGCTTTTGG+AGG	-	chr5.2:9802549-9802568	None:intergenic	40.0%
!!	TTTCAGGTTGCATAACGTTC+TGG	+	chr5.2:9802040-9802059	MS.gene041113:intron	40.0%
!!	TTTTGTGGTTTTGCAGCATG+TGG	+	chr5.2:9802938-9802957	MS.gene041113:intron	40.0%
!!!	ACTTTTTCTAGGGTCAGATG+AGG	-	chr5.2:9801903-9801922	None:intergenic	40.0%
!!!	CGAGCGACTTACTTTTTCTA+GGG	-	chr5.2:9801913-9801932	None:intergenic	40.0%
	AGAGCAGCAATCACAAAGAC+CGG	-	chr5.2:9801879-9801898	None:intergenic	45.0%
	ATGTATCCACCACCAGAACA+AGG	+	chr5.2:9801713-9801732	MS.gene041113:CDS	45.0%
	CGCCTAAACCTCTAGTTGAA+TGG	+	chr5.2:9801849-9801868	MS.gene041113:CDS	45.0%
	GAATTAGGGCCTGTTTGGTT+TGG	+	chr5.2:9802420-9802439	MS.gene041113:intron	45.0%
	GCGACAACAATACGGTTTGA+AGG	+	chr5.2:9803042-9803061	MS.gene041113:CDS	45.0%
	TATCGTGAGCTTGAAAACCG+TGG	+	chr5.2:9803127-9803146	MS.gene041113:CDS	45.0%
	TCTCAGAAGCCAAACCAAAC+AGG	-	chr5.2:9802432-9802451	None:intergenic	45.0%
!	GGCATGGTAATGTTGAGCAA+CGG	+	chr5.2:9803292-9803311	MS.gene041113:CDS	45.0%
!!	AATGTTGAGCAACGGACTAG+AGG	+	chr5.2:9803300-9803319	MS.gene041113:CDS	45.0%
!!	ACGGACTAGAGGAATAGCAA+TGG	+	chr5.2:9803311-9803330	MS.gene041113:CDS	45.0%
!!	TATGCTGGCTTTCCTTGTTC+TGG	-	chr5.2:9801728-9801747	None:intergenic	45.0%
!!!	GCATTTTGGAATGGATAGGG+TGG	+	chr5.2:9803271-9803290	MS.gene041113:intron	45.0%
!!!	GCGAGCGACTTACTTTTTCT+AGG	-	chr5.2:9801914-9801933	None:intergenic	45.0%
	ACAGCTCCAGCAGTTGAACA+TGG	+	chr5.2:9803345-9803364	MS.gene041113:CDS	50.0%
	AGCACTACATCAGCGTACTC+CGG	+	chr5.2:9801794-9801813	MS.gene041113:CDS	50.0%
	CCTCTAGTTGAATGGTCCAC+CGG	+	chr5.2:9801857-9801876	MS.gene041113:CDS	50.0%
	CTCATGCCATGTTCAACTGC+TGG	-	chr5.2:9803354-9803373	None:intergenic	50.0%
	CTTGATTCATTGCTGCTGCG+AGG	+	chr5.2:9803084-9803103	MS.gene041113:CDS	50.0%
	GTAGCTCACTGGAATACCTG+TGG	-	chr5.2:9801771-9801790	None:intergenic	50.0%
	TCAACTAGAGGTTTAGGCGG+AGG	-	chr5.2:9801848-9801867	None:intergenic	50.0%
	TTGGAATGGATAGGGTGGCA+TGG	+	chr5.2:9803276-9803295	MS.gene041113:intron	50.0%
!	GCTGCTGGTTGATTGTATGC+TGG	-	chr5.2:9801743-9801762	None:intergenic	50.0%
!	GTAGTGCTGTTGTAGCTCAC+TGG	-	chr5.2:9801782-9801801	None:intergenic	50.0%
!	TTGCAGCATGTGGTGCTAGT+GGG	+	chr5.2:9802948-9802967	MS.gene041113:intron	50.0%
!	TTTGCAGCATGTGGTGCTAG+TGG	+	chr5.2:9802947-9802966	MS.gene041113:intron	50.0%
	ACTAGAGGTTTAGGCGGAGG+AGG	-	chr5.2:9801845-9801864	None:intergenic	55.0%
	CCGGTGGACCATTCAACTAG+AGG	-	chr5.2:9801860-9801879	None:intergenic	55.0%
	GCAGCAATCACAAAGACCGG+TGG	-	chr5.2:9801876-9801895	None:intergenic	55.0%
	GGCGTAATCTGATGAGGCAC+CGG	-	chr5.2:9801816-9801835	None:intergenic	55.0%
	GGCTTTCCTTGTTCTGGTGG+TGG	-	chr5.2:9801722-9801741	None:intergenic	55.0%
!	AGGAGGGGCGTAATCTGATG+AGG	-	chr5.2:9801822-9801841	None:intergenic	55.0%
!	TGCAGCATGTGGTGCTAGTG+GGG	+	chr5.2:9802949-9802968	MS.gene041113:intron	55.0%
!!	GCTGGCTTTCCTTGTTCTGG+TGG	-	chr5.2:9801725-9801744	None:intergenic	55.0%
	AGAGGTTTAGGCGGAGGAGG+AGG	-	chr5.2:9801842-9801861	None:intergenic	60.0%
	ATACCTGTGGCTGCTGCTGC+TGG	-	chr5.2:9801758-9801777	None:intergenic	60.0%
	GTTTAGGCGGAGGAGGAGGA+GGG	-	chr5.2:9801838-9801857	None:intergenic	60.0%
	TTTAGGCGGAGGAGGAGGAG+GGG	-	chr5.2:9801837-9801856	None:intergenic	60.0%
	CAACCAGCAGCAGCAGCCAC+AGG	+	chr5.2:9801752-9801771	MS.gene041113:CDS	65.0%
	GGTTTAGGCGGAGGAGGAGG+AGG	-	chr5.2:9801839-9801858	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	9801713	9803380	9801713	ID=MS.gene041113
chr5.2	mRNA	9801713	9803380	9801713	ID=MS.gene041113.t1;Parent=MS.gene041113
chr5.2	exon	9801713	9801920	9801713	ID=MS.gene041113.t1.exon1;Parent=MS.gene041113.t1
chr5.2	CDS	9801713	9801920	9801713	ID=cds.MS.gene041113.t1;Parent=MS.gene041113.t1
chr5.2	exon	9802046	9802117	9802046	ID=MS.gene041113.t1.exon2;Parent=MS.gene041113.t1
chr5.2	CDS	9802046	9802117	9802046	ID=cds.MS.gene041113.t1;Parent=MS.gene041113.t1
chr5.2	exon	9802954	9803166	9802954	ID=MS.gene041113.t1.exon3;Parent=MS.gene041113.t1
chr5.2	CDS	9802954	9803166	9802954	ID=cds.MS.gene041113.t1;Parent=MS.gene041113.t1
chr5.2	exon	9803289	9803380	9803289	ID=MS.gene041113.t1.exon4;Parent=MS.gene041113.t1
chr5.2	CDS	9803289	9803380	9803289	ID=cds.MS.gene041113.t1;Parent=MS.gene041113.t1

Gene Sequence

>MS.gene041113

ATGTATCCACCACCAGAACAAGGAAAGCCAGCATACAATCAACCAGCAGCAGCAGCCACAGGTATTCCAGTGAGCTACAACAGCACTACATCAGCGTACTCCGGTGCCTCATCAGATTACGCCCCTCCTCCTCCTCCGCCTAAACCTCTAGTTGAATGGTCCACCGGTCTTTGTGATTGCTGCTCTGCCTCATCTGACCCTAGAAAAAGTAAGTCGCTCGCTCATCCTTTACTAAACTAATTATATTATGCATATACCTACAGCTAGCTATATAACTATATGTATATTAATTAATTTTCACTTGGTTGACTTTGCATATCTAATTTGTTTCAGGTTGCATAACGTTCTGGTGTCCATGTATCACTTTTGGCCAAGTTGCAGAAATCATTGACAAGGGATCCACTTGTAAGACACCTATTCATTTCTAATAACAAATCAATATATATTGAAAGCATTGAGTAGCACAATTGTTAAACAAATTATAGGATATTGCACAGTTTCTTACCCAATTTAATAAAAGTGCTCTTTAATAACGCATAATTCTTTAGAGCTTACATTTTATATATTTATATATTTTTGGATTAATATGCTGATTTCATTAGTTTAAGAAATTACCACATGATACTTGCAAGGATTAATTTGACTTCTTTGATGTGATGGATATGTTTTAAAAAAAAGTAATAGAAATAAGTTATTAATGGAAAAATGAATTAGGGCCTGTTTGGTTTGGCTTCTGAGAAGCAATTCTAGCCCAAAATTAATTCTCTACAGTGCCAAAAGCAATTCTAGCCAAAAACAACATGTTTGGTTCAGCTTTTCATAATTGCTTTTATCCTCCAAAAGCAATTCTCCATGAAGCTACAAATCCTAGCTTCTAGCTTTTCTAGAATCAATTCTCCTTGAACAACGTGTATAGGTTTGTATATTTTATCATTACAACATGTTATTTTACTTTATTGCCCTTTATCAATTCTCATTCTTTATCAATTCTCCTTTAGCTATGTCTATTTTAGTAATTATACATTCAAAAGCAATTCTACATAATTGCATCCAAACATAAATCATTTTGTTTAATCAATTCTACATAATTGTATCCAAACATAAATCAATTCTCTCAGAATCAATTCTGTCAGAATCAATTCTATCAGAATCAATTCTCTCAGAATCAATTATATTCAAAGCTGAACCAAACGGGCACTTAATTGTTGTGATTCAACTTAAGGATTTTTGTGGTTTTGCAGCATGTGGTGCTAGTGGGGCTTTGTATACATTGATTTGTTGTGTGATTGGGTGTCCTTGTTTGTATTCTTGCTTCTATCGGTCAAAGATGCGACAACAATACGGTTTGAAGGGAAATGATTGTACAGATTGCTTGATTCATTGCTGCTGCGAGGCATGCGCCTTGTGTCAAGAATATCGTGAGCTTGAAAACCGTGGATTTAACATGGTCATTGGTACGTGTATATATATACACTATGATATGAACCATTAGTTTAGTATTTGTTTCTTGGCCATTGTTTTCAATCTTTTCTGCTATTAAATCTTAGCTATAAAATTTGCATTTTGGAATGGATAGGGTGGCATGGTAATGTTGAGCAACGGACTAGAGGAATAGCAATGGCTACAACTACAACAGCTCCAGCAGTTGAACATGGCATGAGCCGTTGA

Protein sequence

>MS.gene041113.t1

MYPPPEQGKPAYNQPAAAATGIPVSYNSTTSAYSGASSDYAPPPPPPKPLVEWSTGLCDCCSASSDPRKSCITFWCPCITFGQVAEIIDKGSTSCGASGALYTLICCVIGCPCLYSCFYRSKMRQQYGLKGNDCTDCLIHCCCEACALCQEYRELENRGFNMVIGWHGNVEQRTRGIAMATTTTAPAVEHGMSR