Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047654.t1 | XP_003611770.1 | 94.3 | 194 | 10 | 1 | 1 | 194 | 1 | 193 | 7.90E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047654.t1 | Q9LQU4 | 63.4 | 145 | 44 | 3 | 52 | 194 | 15 | 152 | 8.9e-51 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047654.t1 | G7K803 | 94.3 | 194 | 10 | 1 | 1 | 194 | 1 | 193 | 5.7e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020496 | MS.gene047654 | PPI |
| MS.gene29964 | MS.gene047654 | PPI |
| MS.gene041113 | MS.gene047654 | PPI |
| MS.gene047654 | MS.gene015684 | PPI |
| MS.gene047654 | MS.gene015683 | PPI |
| MS.gene010381 | MS.gene047654 | PPI |
| MS.gene020495 | MS.gene047654 | PPI |
| MS.gene29965 | MS.gene047654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047654.t1 | MTR_5g017650 | 98.454 | 194 | 2 | 1 | 1 | 194 | 1 | 193 | 2.97e-140 | 389 |
| MS.gene047654.t1 | MTR_8g104870 | 90.052 | 191 | 15 | 2 | 5 | 194 | 4 | 191 | 6.06e-111 | 315 |
| MS.gene047654.t1 | MTR_8g104890 | 60.309 | 194 | 52 | 5 | 1 | 194 | 1 | 169 | 6.16e-63 | 192 |
| MS.gene047654.t1 | MTR_4g086330 | 51.449 | 138 | 64 | 1 | 52 | 189 | 63 | 197 | 4.64e-47 | 153 |
| MS.gene047654.t1 | MTR_4g086320 | 54.386 | 114 | 49 | 1 | 52 | 165 | 50 | 160 | 7.95e-39 | 131 |
| MS.gene047654.t1 | MTR_8g104830 | 46.897 | 145 | 67 | 5 | 53 | 194 | 9 | 146 | 8.48e-39 | 130 |
| MS.gene047654.t1 | MTR_6g084940 | 39.506 | 162 | 84 | 4 | 33 | 194 | 2 | 149 | 2.46e-28 | 103 |
| MS.gene047654.t1 | MTR_2g101660 | 38.793 | 116 | 68 | 1 | 53 | 168 | 33 | 145 | 8.43e-25 | 95.5 |
| MS.gene047654.t1 | MTR_1g075550 | 50.407 | 123 | 53 | 3 | 46 | 168 | 9 | 123 | 1.01e-24 | 94.4 |
| MS.gene047654.t1 | MTR_2g101660 | 34.146 | 123 | 81 | 0 | 72 | 194 | 1 | 123 | 8.50e-21 | 83.6 |
| MS.gene047654.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 82 | 220 | 9.32e-16 | 73.2 |
| MS.gene047654.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 40 | 178 | 1.06e-15 | 72.0 |
| MS.gene047654.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 106 | 244 | 1.76e-15 | 72.8 |
| MS.gene047654.t1 | MTR_5g008240 | 38.318 | 107 | 51 | 5 | 68 | 159 | 35 | 141 | 5.45e-12 | 61.6 |
| MS.gene047654.t1 | MTR_0172s0050 | 31.373 | 153 | 61 | 8 | 40 | 158 | 55 | 197 | 2.65e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047654.t1 | AT1G14870 | 61.184 | 152 | 50 | 3 | 45 | 194 | 8 | 152 | 2.58e-62 | 190 |
| MS.gene047654.t1 | AT5G35525 | 59.333 | 150 | 52 | 3 | 47 | 194 | 10 | 152 | 1.40e-57 | 178 |
| MS.gene047654.t1 | AT1G14870 | 65.289 | 121 | 39 | 1 | 45 | 165 | 8 | 125 | 1.42e-54 | 170 |
| MS.gene047654.t1 | AT1G14880 | 55.769 | 156 | 60 | 3 | 41 | 194 | 3 | 151 | 4.62e-53 | 167 |
| MS.gene047654.t1 | AT1G49030 | 51.200 | 125 | 58 | 1 | 52 | 176 | 87 | 208 | 2.11e-41 | 139 |
| MS.gene047654.t1 | AT1G68610 | 52.740 | 146 | 61 | 4 | 52 | 194 | 18 | 158 | 1.52e-40 | 135 |
| MS.gene047654.t1 | AT3G18470 | 49.587 | 121 | 58 | 1 | 52 | 172 | 4 | 121 | 1.68e-39 | 132 |
| MS.gene047654.t1 | AT3G18460 | 50.420 | 119 | 55 | 2 | 53 | 171 | 54 | 168 | 1.77e-36 | 125 |
| MS.gene047654.t1 | AT3G18450 | 38.788 | 165 | 72 | 5 | 8 | 172 | 32 | 167 | 1.23e-33 | 118 |
| MS.gene047654.t1 | AT1G58320 | 44.056 | 143 | 70 | 4 | 52 | 194 | 16 | 148 | 5.58e-30 | 108 |
| MS.gene047654.t1 | AT1G68630 | 40.141 | 142 | 76 | 3 | 53 | 194 | 29 | 161 | 3.80e-27 | 101 |
| MS.gene047654.t1 | AT1G52200 | 38.333 | 120 | 71 | 1 | 53 | 172 | 53 | 169 | 8.25e-25 | 95.9 |
| MS.gene047654.t1 | AT1G52200 | 38.053 | 113 | 67 | 1 | 53 | 165 | 53 | 162 | 1.42e-21 | 87.4 |
| MS.gene047654.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.66e-16 | 72.4 |
| MS.gene047654.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.66e-16 | 72.4 |
| MS.gene047654.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.66e-16 | 72.4 |
| MS.gene047654.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.66e-16 | 72.4 |
| MS.gene047654.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.66e-16 | 72.4 |
| MS.gene047654.t1 | AT2G40935 | 37.069 | 116 | 53 | 6 | 62 | 158 | 39 | 153 | 3.47e-14 | 67.8 |
| MS.gene047654.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.77e-13 | 64.3 |
| MS.gene047654.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.77e-13 | 64.3 |
| MS.gene047654.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.77e-13 | 64.3 |
| MS.gene047654.t1 | AT2G45010 | 28.889 | 135 | 64 | 4 | 53 | 158 | 16 | 147 | 1.16e-11 | 61.2 |
| MS.gene047654.t1 | AT2G45010 | 28.889 | 135 | 64 | 4 | 53 | 158 | 62 | 193 | 1.20e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTGGCTTTCCTTGTTC+TGG | 0.299814 | 5.3:-9963067 | None:intergenic |
| TGGTGTCCATGTATCACTTT+TGG | 0.308941 | 5.3:+9963394 | MS.gene047654:CDS |
| ACATTGATTTGTTGTGTGAT+TGG | 0.360755 | 5.3:+9963836 | MS.gene047654:CDS |
| GGTTTAGGCGGAGGAGGAGG+AGG | 0.361290 | 5.3:-9963178 | None:intergenic |
| TTTCAGGTTGCATAACGTTC+TGG | 0.367290 | 5.3:+9963374 | MS.gene047654:intron |
| CATTGATTTGTTGTGTGATT+GGG | 0.387322 | 5.3:+9963837 | MS.gene047654:CDS |
| CGTGGATTTAACATGGTCAT+TGG | 0.401841 | 5.3:+9964001 | MS.gene047654:CDS |
| GTTTGTATTCTTGCTTCTAT+CGG | 0.402902 | 5.3:+9963867 | MS.gene047654:CDS |
| GGCTTTCCTTGTTCTGGTGG+TGG | 0.406957 | 5.3:-9963061 | None:intergenic |
| TTTAGGCGGAGGAGGAGGAG+GGG | 0.411929 | 5.3:-9963176 | None:intergenic |
| GGAATACCTGTGGCTGCTGC+TGG | 0.443405 | 5.3:-9963100 | None:intergenic |
| TGTCAATGATTTCTGCAACT+TGG | 0.449101 | 5.3:-9963417 | None:intergenic |
| CTCATGCCATGTTCAACTGC+TGG | 0.450375 | 5.3:-9964207 | None:intergenic |
| TTGCAGCATGTGGTGCTAGT+GGG | 0.454314 | 5.3:+9963804 | MS.gene047654:intron |
| GCTGGTGGTTGATTGTATGC+TGG | 0.464049 | 5.3:-9963082 | None:intergenic |
| AGAGGTTTAGGCGGAGGAGG+AGG | 0.475269 | 5.3:-9963181 | None:intergenic |
| CGCCTAAACCTCTAGTTGAA+TGG | 0.476264 | 5.3:+9963191 | MS.gene047654:CDS |
| ACTAGAGGTTTAGGCGGAGG+AGG | 0.486722 | 5.3:-9963184 | None:intergenic |
| GCTGGCTTTCCTTGTTCTGG+TGG | 0.504189 | 5.3:-9963064 | None:intergenic |
| AACATGGCATGAGCCGTTGA+AGG | 0.508025 | 5.3:+9964217 | MS.gene047654:CDS |
| GACCATTCAACTAGAGGTTT+AGG | 0.514640 | 5.3:-9963193 | None:intergenic |
| GCGACAACAATACGGTTTGA+AGG | 0.520833 | 5.3:+9963898 | MS.gene047654:CDS |
| GTAGTGCTGTTGTAGCTCAC+TGG | 0.527040 | 5.3:-9963121 | None:intergenic |
| TCAAAGATGCGACAACAATA+CGG | 0.532365 | 5.3:+9963890 | MS.gene047654:CDS |
| TCAACTAGAGGTTTAGGCGG+AGG | 0.533656 | 5.3:-9963187 | None:intergenic |
| GTTTAGGCGGAGGAGGAGGA+GGG | 0.534825 | 5.3:-9963177 | None:intergenic |
| GGCGTAATCTGATGAGGCAC+CGG | 0.545196 | 5.3:-9963155 | None:intergenic |
| TTTGCAGCATGTGGTGCTAG+TGG | 0.546904 | 5.3:+9963803 | MS.gene047654:intron |
| CGACAACAATACGGTTTGAA+GGG | 0.563752 | 5.3:+9963899 | MS.gene047654:CDS |
| ATACCTGTGGCTGCTGCTGG+TGG | 0.566182 | 5.3:-9963097 | None:intergenic |
| TGCAGCATGTGGTGCTAGTG+GGG | 0.567597 | 5.3:+9963805 | MS.gene047654:intron |
| AGAGCAGCAATCACAAAGAC+CGG | 0.571890 | 5.3:-9963218 | None:intergenic |
| CCTCTAGTTGAATGGTCCAC+CGG | 0.573579 | 5.3:+9963199 | MS.gene047654:CDS |
| CTTGATTCATTGCTGCTGCG+AGG | 0.576909 | 5.3:+9963940 | MS.gene047654:CDS |
| CAATGACCATGTTAAATCCA+CGG | 0.577254 | 5.3:-9964000 | None:intergenic |
| ACTTGGCCAAAAGTGATACA+TGG | 0.588100 | 5.3:-9963400 | None:intergenic |
| AATGTTGAGCAACGGACTAG+AGG | 0.608581 | 5.3:+9964156 | MS.gene047654:CDS |
| CCGGTGGACCATTCAACTAG+AGG | 0.613837 | 5.3:-9963199 | None:intergenic |
| AGCACTACATCAGCGTACTC+CGG | 0.618111 | 5.3:+9963136 | MS.gene047654:CDS |
| CTCACGATATTCTTGACACA+AGG | 0.619435 | 5.3:-9963969 | None:intergenic |
| TTGGAATGGATAGGGTGGCA+TGG | 0.622573 | 5.3:+9964132 | MS.gene047654:intron |
| CATTCAACTAGAGGTTTAGG+CGG | 0.628932 | 5.3:-9963190 | None:intergenic |
| AGTTGCAGAAATCATTGACA+AGG | 0.629883 | 5.3:+9963420 | MS.gene047654:CDS |
| CAACCACCAGCAGCAGCCAC+AGG | 0.630519 | 5.3:+9963094 | MS.gene047654:CDS |
| TGAAAACCGTGGATTTAACA+TGG | 0.630548 | 5.3:+9963994 | MS.gene047654:CDS |
| ATGTATCCACCACCAGAACA+AGG | 0.630755 | 5.3:+9963055 | MS.gene047654:CDS |
| GGCATGGTAATGTTGAGCAA+CGG | 0.640031 | 5.3:+9964148 | MS.gene047654:CDS |
| AGGAGGGGCGTAATCTGATG+AGG | 0.643098 | 5.3:-9963161 | None:intergenic |
| ACAGCTCCAGCAGTTGAACA+TGG | 0.645065 | 5.3:+9964201 | MS.gene047654:CDS |
| GTAGCTCACTGGAATACCTG+TGG | 0.652121 | 5.3:-9963110 | None:intergenic |
| ACGGACTAGAGGAATAGCAA+TGG | 0.686509 | 5.3:+9964167 | MS.gene047654:CDS |
| GCAGCAATCACAAAGACCGG+TGG | 0.689468 | 5.3:-9963215 | None:intergenic |
| TATCGTGAGCTTGAAAACCG+TGG | 0.692905 | 5.3:+9963983 | MS.gene047654:CDS |
| GTTGCAGAAATCATTGACAA+GGG | 0.697634 | 5.3:+9963421 | MS.gene047654:CDS |
| TAGAAGCAAGAATACAAACA+AGG | 0.701719 | 5.3:-9963863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATATTTATATATTTT+TGG | + | chr5.3:9963606-9963625 | MS.gene047654:intron | 0.0% |
| !!! | TAATATAATTAGTTTAGTAA+AGG | - | chr5.3:9963279-9963298 | None:intergenic | 10.0% |
| !! | AGAAACAAATACTAAATTAA+TGG | - | chr5.3:9964057-9964076 | None:intergenic | 15.0% |
| !! | TAATGGAAATAAGTTATTAA+TGG | + | chr5.3:9963735-9963754 | MS.gene047654:intron | 15.0% |
| !!! | ATTTGTTATTAGAAATGAAT+AGG | - | chr5.3:9963463-9963482 | None:intergenic | 15.0% |
| !!! | TATGTATATTAATTTTCACT+TGG | + | chr5.3:9963329-9963348 | MS.gene047654:intron | 15.0% |
| !!! | TTAATTTAGTATTTGTTTCT+TGG | + | chr5.3:9964057-9964076 | MS.gene047654:intron | 15.0% |
| !! | ACAATTGCTAAACAAATTAT+AGG | + | chr5.3:9963514-9963533 | MS.gene047654:intron | 20.0% |
| !! | TTATTAAATTGGGTAAGAAA+CGG | - | chr5.3:9963546-9963565 | None:intergenic | 20.0% |
| !!! | AAAGAGCACTTTTATTAAAT+TGG | - | chr5.3:9963557-9963576 | None:intergenic | 20.0% |
| !!! | AAGAGCACTTTTATTAAATT+GGG | - | chr5.3:9963556-9963575 | None:intergenic | 20.0% |
| !!! | ATAAAATTTGCATTTTGGAA+TGG | + | chr5.3:9964118-9964137 | MS.gene047654:intron | 20.0% |
| !!! | TAGCTATAAAATTTGCATTT+TGG | + | chr5.3:9964113-9964132 | MS.gene047654:intron | 20.0% |
| ! | AATTGTTGTGATTCAACTTA+AGG | + | chr5.3:9963769-9963788 | MS.gene047654:intron | 25.0% |
| ! | GCAGAAAAGATTGAAAATAA+TGG | - | chr5.3:9964083-9964102 | None:intergenic | 25.0% |
| !! | AATTAGTTTAGTAAAGGATG+AGG | - | chr5.3:9963273-9963292 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGTAAAGGATGA+GGG | - | chr5.3:9963272-9963291 | None:intergenic | 25.0% |
| !! | ATTCAACTTAAGGATTTTTG+TGG | + | chr5.3:9963779-9963798 | MS.gene047654:intron | 25.0% |
| !!! | TTGCATATCTAATTTGTTTC+AGG | + | chr5.3:9963358-9963377 | MS.gene047654:intron | 25.0% |
| ATAGTTATATAGCTAGCTGT+AGG | - | chr5.3:9963310-9963329 | None:intergenic | 30.0% | |
| GTTTGTATTCTTGCTTCTAT+CGG | + | chr5.3:9963867-9963886 | MS.gene047654:CDS | 30.0% | |
| TAGAAGCAAGAATACAAACA+AGG | - | chr5.3:9963866-9963885 | None:intergenic | 30.0% | |
| ! | ATTTGACTTCTTTGATGTGA+TGG | + | chr5.3:9963686-9963705 | MS.gene047654:intron | 30.0% |
| !! | ACATTGATTTGTTGTGTGAT+TGG | + | chr5.3:9963836-9963855 | MS.gene047654:CDS | 30.0% |
| !! | CATTGATTTGTTGTGTGATT+GGG | + | chr5.3:9963837-9963856 | MS.gene047654:CDS | 30.0% |
| !!! | ATTTGCATTTTGGAATGGAT+AGG | + | chr5.3:9964123-9964142 | MS.gene047654:intron | 30.0% |
| !!! | TTTGCATTTTGGAATGGATA+GGG | + | chr5.3:9964124-9964143 | MS.gene047654:intron | 30.0% |
| AGTTGCAGAAATCATTGACA+AGG | + | chr5.3:9963420-9963439 | MS.gene047654:CDS | 35.0% | |
| ATGAATAGGTGTCTTACAAG+TGG | - | chr5.3:9963449-9963468 | None:intergenic | 35.0% | |
| ATTACCACATGATACTTGCA+AGG | + | chr5.3:9963659-9963678 | MS.gene047654:intron | 35.0% | |
| CAATGACCATGTTAAATCCA+CGG | - | chr5.3:9964003-9964022 | None:intergenic | 35.0% | |
| GTTGCAGAAATCATTGACAA+GGG | + | chr5.3:9963421-9963440 | MS.gene047654:CDS | 35.0% | |
| TAATCCTTGCAAGTATCATG+TGG | - | chr5.3:9963666-9963685 | None:intergenic | 35.0% | |
| TCAAAGATGCGACAACAATA+CGG | + | chr5.3:9963890-9963909 | MS.gene047654:CDS | 35.0% | |
| TGAAAACCGTGGATTTAACA+TGG | + | chr5.3:9963994-9964013 | MS.gene047654:CDS | 35.0% | |
| TGTCAATGATTTCTGCAACT+TGG | - | chr5.3:9963420-9963439 | None:intergenic | 35.0% | |
| !!! | ATGAGGGACTTACTTTTTCT+AGG | - | chr5.3:9963256-9963275 | None:intergenic | 35.0% |
| !!! | TGAGGGACTTACTTTTTCTA+GGG | - | chr5.3:9963255-9963274 | None:intergenic | 35.0% |
| ACTTGGCCAAAAGTGATACA+TGG | - | chr5.3:9963403-9963422 | None:intergenic | 40.0% | |
| CATTCAACTAGAGGTTTAGG+CGG | - | chr5.3:9963193-9963212 | None:intergenic | 40.0% | |
| CGACAACAATACGGTTTGAA+GGG | + | chr5.3:9963899-9963918 | MS.gene047654:CDS | 40.0% | |
| CGTGGATTTAACATGGTCAT+TGG | + | chr5.3:9964001-9964020 | MS.gene047654:CDS | 40.0% | |
| CTCACGATATTCTTGACACA+AGG | - | chr5.3:9963972-9963991 | None:intergenic | 40.0% | |
| GACCATTCAACTAGAGGTTT+AGG | - | chr5.3:9963196-9963215 | None:intergenic | 40.0% | |
| ! | TGGTGTCCATGTATCACTTT+TGG | + | chr5.3:9963394-9963413 | MS.gene047654:CDS | 40.0% |
| !! | TTTCAGGTTGCATAACGTTC+TGG | + | chr5.3:9963374-9963393 | MS.gene047654:intron | 40.0% |
| !! | TTTTGTGGTTTTGCAGCATG+TGG | + | chr5.3:9963794-9963813 | MS.gene047654:intron | 40.0% |
| !!! | ACTTTTTCTAGGGTCAGATG+AGG | - | chr5.3:9963245-9963264 | None:intergenic | 40.0% |
| AGAGCAGCAATCACAAAGAC+CGG | - | chr5.3:9963221-9963240 | None:intergenic | 45.0% | |
| ATGTATCCACCACCAGAACA+AGG | + | chr5.3:9963055-9963074 | MS.gene047654:CDS | 45.0% | |
| CGCCTAAACCTCTAGTTGAA+TGG | + | chr5.3:9963191-9963210 | MS.gene047654:CDS | 45.0% | |
| GCGACAACAATACGGTTTGA+AGG | + | chr5.3:9963898-9963917 | MS.gene047654:CDS | 45.0% | |
| TATCGTGAGCTTGAAAACCG+TGG | + | chr5.3:9963983-9964002 | MS.gene047654:CDS | 45.0% | |
| ! | GGCATGGTAATGTTGAGCAA+CGG | + | chr5.3:9964148-9964167 | MS.gene047654:CDS | 45.0% |
| !! | AATGTTGAGCAACGGACTAG+AGG | + | chr5.3:9964156-9964175 | MS.gene047654:CDS | 45.0% |
| !! | ACGGACTAGAGGAATAGCAA+TGG | + | chr5.3:9964167-9964186 | MS.gene047654:CDS | 45.0% |
| !! | TATGCTGGCTTTCCTTGTTC+TGG | - | chr5.3:9963070-9963089 | None:intergenic | 45.0% |
| !!! | GCATTTTGGAATGGATAGGG+TGG | + | chr5.3:9964127-9964146 | MS.gene047654:intron | 45.0% |
| !! | TAAAAAAAAAAAAAAAGTAA+TGG | + | chr5.3:9963718-9963737 | MS.gene047654:intron | 5.0% |
| ACAGCTCCAGCAGTTGAACA+TGG | + | chr5.3:9964201-9964220 | MS.gene047654:CDS | 50.0% | |
| AGCACTACATCAGCGTACTC+CGG | + | chr5.3:9963136-9963155 | MS.gene047654:CDS | 50.0% | |
| CCTCTAGTTGAATGGTCCAC+CGG | + | chr5.3:9963199-9963218 | MS.gene047654:CDS | 50.0% | |
| CTCATGCCATGTTCAACTGC+TGG | - | chr5.3:9964210-9964229 | None:intergenic | 50.0% | |
| CTTGATTCATTGCTGCTGCG+AGG | + | chr5.3:9963940-9963959 | MS.gene047654:CDS | 50.0% | |
| GCTGGTGGTTGATTGTATGC+TGG | - | chr5.3:9963085-9963104 | None:intergenic | 50.0% | |
| GTAGCTCACTGGAATACCTG+TGG | - | chr5.3:9963113-9963132 | None:intergenic | 50.0% | |
| TCAACTAGAGGTTTAGGCGG+AGG | - | chr5.3:9963190-9963209 | None:intergenic | 50.0% | |
| TTGGAATGGATAGGGTGGCA+TGG | + | chr5.3:9964132-9964151 | MS.gene047654:intron | 50.0% | |
| ! | GTAGTGCTGTTGTAGCTCAC+TGG | - | chr5.3:9963124-9963143 | None:intergenic | 50.0% |
| ! | TTGCAGCATGTGGTGCTAGT+GGG | + | chr5.3:9963804-9963823 | MS.gene047654:intron | 50.0% |
| ! | TTTGCAGCATGTGGTGCTAG+TGG | + | chr5.3:9963803-9963822 | MS.gene047654:intron | 50.0% |
| ACTAGAGGTTTAGGCGGAGG+AGG | - | chr5.3:9963187-9963206 | None:intergenic | 55.0% | |
| CCGGTGGACCATTCAACTAG+AGG | - | chr5.3:9963202-9963221 | None:intergenic | 55.0% | |
| GCAGCAATCACAAAGACCGG+TGG | - | chr5.3:9963218-9963237 | None:intergenic | 55.0% | |
| GGCGTAATCTGATGAGGCAC+CGG | - | chr5.3:9963158-9963177 | None:intergenic | 55.0% | |
| GGCTTTCCTTGTTCTGGTGG+TGG | - | chr5.3:9963064-9963083 | None:intergenic | 55.0% | |
| ! | AGGAGGGGCGTAATCTGATG+AGG | - | chr5.3:9963164-9963183 | None:intergenic | 55.0% |
| ! | TGCAGCATGTGGTGCTAGTG+GGG | + | chr5.3:9963805-9963824 | MS.gene047654:intron | 55.0% |
| !! | GCTGGCTTTCCTTGTTCTGG+TGG | - | chr5.3:9963067-9963086 | None:intergenic | 55.0% |
| AGAGGTTTAGGCGGAGGAGG+AGG | - | chr5.3:9963184-9963203 | None:intergenic | 60.0% | |
| ATACCTGTGGCTGCTGCTGG+TGG | - | chr5.3:9963100-9963119 | None:intergenic | 60.0% | |
| GGAATACCTGTGGCTGCTGC+TGG | - | chr5.3:9963103-9963122 | None:intergenic | 60.0% | |
| GTTTAGGCGGAGGAGGAGGA+GGG | - | chr5.3:9963180-9963199 | None:intergenic | 60.0% | |
| TTTAGGCGGAGGAGGAGGAG+GGG | - | chr5.3:9963179-9963198 | None:intergenic | 60.0% | |
| CAACCACCAGCAGCAGCCAC+AGG | + | chr5.3:9963094-9963113 | MS.gene047654:CDS | 65.0% | |
| GGTTTAGGCGGAGGAGGAGG+AGG | - | chr5.3:9963181-9963200 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 9963055 | 9964236 | 9963055 | ID=MS.gene047654 |
| chr5.3 | mRNA | 9963055 | 9964236 | 9963055 | ID=MS.gene047654.t1;Parent=MS.gene047654 |
| chr5.3 | exon | 9963055 | 9963262 | 9963055 | ID=MS.gene047654.t1.exon1;Parent=MS.gene047654.t1 |
| chr5.3 | CDS | 9963055 | 9963262 | 9963055 | ID=cds.MS.gene047654.t1;Parent=MS.gene047654.t1 |
| chr5.3 | exon | 9963380 | 9963451 | 9963380 | ID=MS.gene047654.t1.exon2;Parent=MS.gene047654.t1 |
| chr5.3 | CDS | 9963380 | 9963451 | 9963380 | ID=cds.MS.gene047654.t1;Parent=MS.gene047654.t1 |
| chr5.3 | exon | 9963810 | 9964022 | 9963810 | ID=MS.gene047654.t1.exon3;Parent=MS.gene047654.t1 |
| chr5.3 | CDS | 9963810 | 9964022 | 9963810 | ID=cds.MS.gene047654.t1;Parent=MS.gene047654.t1 |
| chr5.3 | exon | 9964145 | 9964236 | 9964145 | ID=MS.gene047654.t1.exon4;Parent=MS.gene047654.t1 |
| chr5.3 | CDS | 9964145 | 9964236 | 9964145 | ID=cds.MS.gene047654.t1;Parent=MS.gene047654.t1 |
| Gene Sequence |
| Protein sequence |
