Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29964.t1 | XP_003630909.1 | 92.2 | 193 | 12 | 2 | 1 | 192 | 1 | 191 | 5.20E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29964.t1 | Q9LQU4 | 64.1 | 142 | 45 | 2 | 53 | 192 | 15 | 152 | 5.2e-51 | 202.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29964.t1 | G7LAH7 | 92.2 | 193 | 12 | 2 | 1 | 192 | 1 | 191 | 3.8e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29964 | MS.gene041113 | PPI |
| MS.gene29964 | MS.gene010381 | PPI |
| MS.gene29964 | MS.gene29965 | PPI |
| MS.gene29964 | MS.gene020495 | PPI |
| MS.gene29964 | MS.gene020496 | PPI |
| MS.gene29964 | MS.gene047654 | PPI |
| MS.gene29964 | MS.gene015684 | PPI |
| MS.gene29964 | MS.gene015683 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29964.t1 | MTR_8g104870 | 93.264 | 193 | 10 | 2 | 1 | 192 | 1 | 191 | 6.66e-117 | 330 |
| MS.gene29964.t1 | MTR_5g017650 | 91.667 | 192 | 10 | 2 | 4 | 192 | 5 | 193 | 8.24e-110 | 312 |
| MS.gene29964.t1 | MTR_8g104890 | 62.637 | 182 | 44 | 4 | 11 | 192 | 12 | 169 | 3.25e-62 | 191 |
| MS.gene29964.t1 | MTR_4g086330 | 52.593 | 135 | 64 | 0 | 53 | 187 | 63 | 197 | 4.54e-50 | 160 |
| MS.gene29964.t1 | MTR_4g086320 | 55.856 | 111 | 49 | 0 | 53 | 163 | 50 | 160 | 1.66e-41 | 137 |
| MS.gene29964.t1 | MTR_8g104830 | 46.809 | 141 | 70 | 3 | 54 | 192 | 9 | 146 | 3.63e-39 | 131 |
| MS.gene29964.t1 | MTR_6g084940 | 40.741 | 162 | 81 | 4 | 32 | 192 | 2 | 149 | 1.47e-30 | 109 |
| MS.gene29964.t1 | MTR_1g075550 | 53.333 | 120 | 51 | 2 | 47 | 166 | 9 | 123 | 3.58e-28 | 103 |
| MS.gene29964.t1 | MTR_2g101660 | 36.691 | 139 | 88 | 0 | 54 | 192 | 33 | 171 | 8.60e-28 | 103 |
| MS.gene29964.t1 | MTR_2g101660 | 34.959 | 123 | 80 | 0 | 70 | 192 | 1 | 123 | 7.98e-22 | 86.3 |
| MS.gene29964.t1 | MTR_5g008240 | 34.416 | 154 | 75 | 6 | 53 | 191 | 82 | 224 | 1.26e-16 | 75.1 |
| MS.gene29964.t1 | MTR_5g008240 | 34.667 | 150 | 72 | 6 | 53 | 187 | 40 | 178 | 1.28e-16 | 74.3 |
| MS.gene29964.t1 | MTR_5g008240 | 34.416 | 154 | 75 | 6 | 53 | 191 | 106 | 248 | 1.90e-16 | 75.1 |
| MS.gene29964.t1 | MTR_5g022670 | 34.579 | 107 | 69 | 1 | 53 | 159 | 294 | 399 | 9.31e-13 | 66.2 |
| MS.gene29964.t1 | MTR_5g008240 | 34.286 | 140 | 66 | 6 | 67 | 191 | 36 | 164 | 5.24e-12 | 61.6 |
| MS.gene29964.t1 | MTR_8g075150 | 35.238 | 105 | 67 | 1 | 53 | 157 | 301 | 404 | 8.46e-12 | 63.2 |
| MS.gene29964.t1 | MTR_7g044840 | 25.564 | 133 | 69 | 3 | 53 | 156 | 59 | 190 | 1.15e-11 | 62.0 |
| MS.gene29964.t1 | MTR_0172s0050 | 29.747 | 158 | 70 | 7 | 39 | 163 | 55 | 204 | 3.57e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29964.t1 | AT1G14870 | 61.745 | 149 | 51 | 2 | 46 | 192 | 8 | 152 | 2.32e-62 | 190 |
| MS.gene29964.t1 | AT5G35525 | 58.065 | 155 | 59 | 2 | 40 | 192 | 2 | 152 | 6.46e-59 | 181 |
| MS.gene29964.t1 | AT1G14870 | 66.102 | 118 | 40 | 0 | 46 | 163 | 8 | 125 | 8.09e-55 | 171 |
| MS.gene29964.t1 | AT1G14880 | 57.047 | 149 | 58 | 2 | 46 | 192 | 7 | 151 | 4.21e-53 | 167 |
| MS.gene29964.t1 | AT1G68610 | 53.846 | 143 | 61 | 3 | 53 | 192 | 18 | 158 | 2.29e-43 | 142 |
| MS.gene29964.t1 | AT1G49030 | 47.826 | 138 | 70 | 1 | 53 | 190 | 87 | 222 | 3.58e-41 | 139 |
| MS.gene29964.t1 | AT3G18470 | 45.652 | 138 | 65 | 1 | 53 | 190 | 4 | 131 | 3.54e-39 | 131 |
| MS.gene29964.t1 | AT3G18460 | 50.000 | 116 | 57 | 1 | 54 | 169 | 54 | 168 | 3.24e-36 | 125 |
| MS.gene29964.t1 | AT3G18450 | 42.373 | 118 | 67 | 1 | 53 | 170 | 51 | 167 | 2.05e-33 | 117 |
| MS.gene29964.t1 | AT1G58320 | 44.681 | 141 | 69 | 4 | 53 | 192 | 16 | 148 | 5.79e-31 | 110 |
| MS.gene29964.t1 | AT1G68630 | 40.288 | 139 | 77 | 2 | 54 | 192 | 29 | 161 | 1.05e-28 | 105 |
| MS.gene29964.t1 | AT1G52200 | 38.462 | 117 | 72 | 0 | 54 | 170 | 53 | 169 | 1.79e-26 | 100 |
| MS.gene29964.t1 | AT1G52200 | 38.182 | 110 | 68 | 0 | 54 | 163 | 53 | 162 | 3.12e-23 | 91.7 |
| MS.gene29964.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.33e-16 | 74.3 |
| MS.gene29964.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.33e-16 | 74.3 |
| MS.gene29964.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.33e-16 | 74.3 |
| MS.gene29964.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.33e-16 | 74.3 |
| MS.gene29964.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.33e-16 | 74.3 |
| MS.gene29964.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 54 | 156 | 62 | 193 | 4.34e-13 | 65.9 |
| MS.gene29964.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 54 | 156 | 16 | 147 | 4.37e-13 | 65.1 |
| MS.gene29964.t1 | AT2G40935 | 34.167 | 120 | 51 | 4 | 53 | 156 | 46 | 153 | 5.16e-13 | 64.7 |
| MS.gene29964.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.08e-12 | 63.5 |
| MS.gene29964.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.08e-12 | 63.5 |
| MS.gene29964.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.08e-12 | 63.5 |
| MS.gene29964.t1 | AT5G51400 | 27.820 | 133 | 65 | 4 | 54 | 156 | 62 | 193 | 3.13e-11 | 60.8 |
| MS.gene29964.t1 | AT4G35920 | 35.238 | 105 | 67 | 1 | 53 | 157 | 299 | 402 | 9.91e-11 | 60.1 |
| MS.gene29964.t1 | AT4G35920 | 35.238 | 105 | 67 | 1 | 53 | 157 | 299 | 402 | 9.91e-11 | 60.1 |
| MS.gene29964.t1 | AT4G35920 | 35.238 | 105 | 67 | 1 | 53 | 157 | 299 | 402 | 9.91e-11 | 60.1 |
| MS.gene29964.t1 | AT4G35920 | 35.238 | 105 | 67 | 1 | 53 | 157 | 299 | 402 | 9.91e-11 | 60.1 |
| MS.gene29964.t1 | AT4G35920 | 35.238 | 105 | 67 | 1 | 53 | 157 | 299 | 402 | 9.91e-11 | 60.1 |
Find 54 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGGTTGCATAACATTC+TGG | 0.295102 | 4.3:-1629596 | MS.gene29964:intron |
| TGGTGTCCATGTATCACTTT+TGG | 0.295539 | 4.3:-1629576 | MS.gene29964:CDS |
| ACATTGATTTGTTGTGTGAT+TGG | 0.370159 | 4.3:-1629133 | MS.gene29964:CDS |
| CGTGGATTTAACATGGTCAT+TGG | 0.406795 | 4.3:-1628968 | MS.gene29964:intron |
| GACCATTCAACTAGAGGTTT+AGG | 0.409162 | 4.3:+1629804 | None:intergenic |
| TATGCTGGCTTTCCATCCTC+TGG | 0.412339 | 4.3:+1629936 | None:intergenic |
| AGCTACAACAGCGCTACATC+GGG | 0.420241 | 4.3:-1629876 | MS.gene29964:CDS |
| AGAGGTTTAGGAGGAGGAGG+AGG | 0.422476 | 4.3:+1629816 | None:intergenic |
| CCTTGTGGTTGATTGTATGC+TGG | 0.422766 | 4.3:+1629921 | None:intergenic |
| ATTTGTTGTGTGATTGGATG+TGG | 0.426662 | 4.3:-1629127 | MS.gene29964:CDS |
| CTCATGCCTTGTTCAACTGC+TGG | 0.446916 | 4.3:+1628807 | None:intergenic |
| TGTCAATGATTTCTGCAACT+TGG | 0.449101 | 4.3:+1629553 | None:intergenic |
| TTGCAGCATGTGGTGCTAGT+GGG | 0.477577 | 4.3:-1629165 | MS.gene29964:intron |
| GTAGCGCTGTTGTAGCTAAC+CGG | 0.481461 | 4.3:+1629882 | None:intergenic |
| GTTTGTATTCATGCTTCTAC+CGG | 0.481906 | 4.3:-1629102 | MS.gene29964:CDS |
| CTCCTAAACCTCTAGTTGAA+TGG | 0.493379 | 4.3:-1629806 | MS.gene29964:CDS |
| GAGACAACAATACGGTTTGA+AGG | 0.511075 | 4.3:-1629071 | MS.gene29964:CDS |
| TCAACTAGAGGTTTAGGAGG+AGG | 0.514397 | 4.3:+1629810 | None:intergenic |
| TGTGATTGCTGCTCTAACCC+TGG | 0.516136 | 4.3:-1629771 | MS.gene29964:CDS |
| ACTAGAGGTTTAGGAGGAGG+AGG | 0.519443 | 4.3:+1629813 | None:intergenic |
| CGCGTAATCTGATGAGGCAC+CGG | 0.538603 | 4.3:+1629848 | None:intergenic |
| ATTGTTGTCTCATCTTTGAC+CGG | 0.542859 | 4.3:+1629083 | None:intergenic |
| AGCGCTACATCGGGGTACTC+CGG | 0.545618 | 4.3:-1629867 | MS.gene29964:CDS |
| TAGCTACAACAGCGCTACAT+CGG | 0.552765 | 4.3:-1629877 | MS.gene29964:CDS |
| TTTGCAGCATGTGGTGCTAG+TGG | 0.554320 | 4.3:-1629166 | MS.gene29964:intron |
| CATTCAACTAGAGGTTTAGG+AGG | 0.560404 | 4.3:+1629807 | None:intergenic |
| AGACAACAATACGGTTTGAA+GGG | 0.566421 | 4.3:-1629070 | MS.gene29964:CDS |
| AAAATGTATCAACCAGAGGA+TGG | 0.567195 | 4.3:-1629948 | MS.gene29964:CDS |
| CCTCTAGTTGAATGGTCCAC+CGG | 0.573579 | 4.3:-1629798 | MS.gene29964:CDS |
| AGAGCAGCAATCACAAAGAC+CGG | 0.576627 | 4.3:+1629779 | None:intergenic |
| CAATGACCATGTTAAATCCA+CGG | 0.577254 | 4.3:+1628969 | None:intergenic |
| ACTTGGCCAAAAGTGATACA+TGG | 0.588100 | 4.3:+1629570 | None:intergenic |
| TTGGAATGGATAGGGTGGCA+TGG | 0.589043 | 4.3:-1628882 | MS.gene29964:intron |
| AAACCTGTGGCAGCTCCTTG+TGG | 0.594259 | 4.3:+1629906 | None:intergenic |
| TGCAGCATGTGGTGCTAGTG+GGG | 0.597912 | 4.3:-1629164 | MS.gene29964:intron |
| CAACCACAAGGAGCTGCCAC+AGG | 0.600467 | 4.3:-1629909 | MS.gene29964:CDS |
| AATGTTGAGCAACGGACTAG+AGG | 0.608581 | 4.3:-1628858 | MS.gene29964:CDS |
| GGCATGGAAATGTTGAGCAA+CGG | 0.609109 | 4.3:-1628866 | MS.gene29964:CDS |
| TTTGATTCATTGCTGCTGTG+AGG | 0.610121 | 4.3:-1629029 | MS.gene29964:CDS |
| ATATTCTTGACACAAGGCAC+AGG | 0.612686 | 4.3:+1629006 | None:intergenic |
| CCGGTGGACCATTCAACTAG+AGG | 0.613837 | 4.3:+1629798 | None:intergenic |
| CTCACGATATTCTTGACACA+AGG | 0.619435 | 4.3:+1629000 | None:intergenic |
| AGTTGCAGAAATCATTGACA+AGG | 0.629883 | 4.3:-1629550 | MS.gene29964:CDS |
| TGAAAACCGTGGATTTAACA+TGG | 0.630548 | 4.3:-1628975 | MS.gene29964:CDS |
| AGGAGGCGCGTAATCTGATG+AGG | 0.643098 | 4.3:+1629842 | None:intergenic |
| ACAGCTCCAGCAGTTGAACA+AGG | 0.649553 | 4.3:-1628813 | MS.gene29964:CDS |
| TCAAAGATGAGACAACAATA+CGG | 0.651936 | 4.3:-1629079 | MS.gene29964:CDS |
| CCAGCATACAATCAACCACA+AGG | 0.659702 | 4.3:-1629921 | MS.gene29964:CDS |
| GTAGCTAACCGGAAAACCTG+TGG | 0.661310 | 4.3:+1629893 | None:intergenic |
| ACGGACTAGAGGAATAGCAA+TGG | 0.686509 | 4.3:-1628847 | MS.gene29964:CDS |
| TATCGTGAGCTTGAAAACCG+TGG | 0.692905 | 4.3:-1628986 | MS.gene29964:CDS |
| GCAGCAATCACAAAGACCGG+TGG | 0.694206 | 4.3:+1629782 | None:intergenic |
| GTTGCAGAAATCATTGACAA+GGG | 0.697634 | 4.3:-1629549 | MS.gene29964:CDS |
| GCTACAACAGCGCTACATCG+GGG | 0.725051 | 4.3:-1629875 | MS.gene29964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATATAGATATTGAA+AGG | - | chr4.3:1629285-1629304 | MS.gene29964:intron | 10.0% |
| !! | TAATAATATAGATATTGAAA+GGG | - | chr4.3:1629286-1629305 | MS.gene29964:intron | 10.0% |
| !!! | TATGTTTTAAAAAGTAAAAT+TGG | - | chr4.3:1629479-1629498 | MS.gene29964:intron | 10.0% |
| !! | AATACATAATAATACTTTAG+AGG | - | chr4.3:1629368-1629387 | MS.gene29964:intron | 15.0% |
| !! | GAAATAAGTTACTAATGTAA+TGG | - | chr4.3:1629501-1629520 | MS.gene29964:intron | 20.0% |
| !! | TATAGTTATATGCATAGTAA+AGG | + | chr4.3:1629018-1629037 | None:intergenic | 20.0% |
| !!! | TGATTTATTTTGATTGAACT+TGG | - | chr4.3:1629844-1629863 | MS.gene29964:CDS | 20.0% |
| ! | AATATAGATATTGAAAGGGT+TGG | - | chr4.3:1629290-1629309 | MS.gene29964:intron | 25.0% |
| ! | ACAATTGTCAAAGAAGTTAT+AGG | - | chr4.3:1629318-1629337 | MS.gene29964:intron | 25.0% |
| ! | ATATAGATATTGAAAGGGTT+GGG | - | chr4.3:1629291-1629310 | MS.gene29964:intron | 25.0% |
| ! | TTATATGCATAGTAAAGGAT+GGG | + | chr4.3:1629013-1629032 | None:intergenic | 25.0% |
| !!! | AATTTGTTATGAGAAGTGAA+TGG | + | chr4.3:1629239-1629258 | None:intergenic | 25.0% |
| !!! | ATTTGTTATGAGAAGTGAAT+GGG | + | chr4.3:1629238-1629257 | None:intergenic | 25.0% |
| !!! | TATTTTGATTGAACTTGGAA+TGG | - | chr4.3:1629849-1629868 | MS.gene29964:CDS | 25.0% |
| !!! | TTGCATATCTAATTTGTTTC+AGG | - | chr4.3:1629133-1629152 | MS.gene29964:CDS | 25.0% |
| AATTGTTGTGAGTCAACTTA+AGG | - | chr4.3:1629539-1629558 | MS.gene29964:intron | 30.0% | |
| GTTATATGCATAGTAAAGGA+TGG | + | chr4.3:1629014-1629033 | None:intergenic | 30.0% | |
| TATATGCATAGTAAAGGATG+GGG | + | chr4.3:1629012-1629031 | None:intergenic | 30.0% | |
| TCAAAGATGAGACAACAATA+CGG | - | chr4.3:1629666-1629685 | MS.gene29964:intron | 30.0% | |
| TGAACTCTAAATTGATGTGA+TGG | - | chr4.3:1629451-1629470 | MS.gene29964:intron | 30.0% | |
| ! | AGTCAACTTAAGGATTTTTG+TGG | - | chr4.3:1629549-1629568 | MS.gene29964:CDS | 30.0% |
| !! | ACATTGATTTGTTGTGTGAT+TGG | - | chr4.3:1629612-1629631 | MS.gene29964:intron | 30.0% |
| AGACAACAATACGGTTTGAA+GGG | - | chr4.3:1629675-1629694 | MS.gene29964:intron | 35.0% | |
| AGTTGCAGAAATCATTGACA+AGG | - | chr4.3:1629195-1629214 | MS.gene29964:intron | 35.0% | |
| ATATGCATAGTAAAGGATGG+GGG | + | chr4.3:1629011-1629030 | None:intergenic | 35.0% | |
| ATTGTTGTCTCATCTTTGAC+CGG | + | chr4.3:1629665-1629684 | None:intergenic | 35.0% | |
| CAATGACCATGTTAAATCCA+CGG | + | chr4.3:1629779-1629798 | None:intergenic | 35.0% | |
| GATTGAACTTGGAATGGATA+GGG | - | chr4.3:1629855-1629874 | MS.gene29964:CDS | 35.0% | |
| GTTGCAGAAATCATTGACAA+GGG | - | chr4.3:1629196-1629215 | MS.gene29964:intron | 35.0% | |
| GTTTGTATTCATGCTTCTAC+CGG | - | chr4.3:1629643-1629662 | MS.gene29964:intron | 35.0% | |
| TGAAAACCGTGGATTTAACA+TGG | - | chr4.3:1629770-1629789 | MS.gene29964:CDS | 35.0% | |
| TGATTGAACTTGGAATGGAT+AGG | - | chr4.3:1629854-1629873 | MS.gene29964:CDS | 35.0% | |
| TGTCAATGATTTCTGCAACT+TGG | + | chr4.3:1629195-1629214 | None:intergenic | 35.0% | |
| !! | ATTTGTTGTGTGATTGGATG+TGG | - | chr4.3:1629618-1629637 | MS.gene29964:intron | 35.0% |
| !! | TTTCAGGTTGCATAACATTC+TGG | - | chr4.3:1629149-1629168 | MS.gene29964:CDS | 35.0% |
| ACTTGGCCAAAAGTGATACA+TGG | + | chr4.3:1629178-1629197 | None:intergenic | 40.0% | |
| ATATTCTTGACACAAGGCAC+AGG | + | chr4.3:1629742-1629761 | None:intergenic | 40.0% | |
| CATTCAACTAGAGGTTTAGG+AGG | + | chr4.3:1628941-1628960 | None:intergenic | 40.0% | |
| CGTGGATTTAACATGGTCAT+TGG | - | chr4.3:1629777-1629796 | MS.gene29964:CDS | 40.0% | |
| CTCACGATATTCTTGACACA+AGG | + | chr4.3:1629748-1629767 | None:intergenic | 40.0% | |
| CTCCTAAACCTCTAGTTGAA+TGG | - | chr4.3:1628939-1628958 | MS.gene29964:intron | 40.0% | |
| GACCATTCAACTAGAGGTTT+AGG | + | chr4.3:1628944-1628963 | None:intergenic | 40.0% | |
| GAGACAACAATACGGTTTGA+AGG | - | chr4.3:1629674-1629693 | MS.gene29964:intron | 40.0% | |
| TTTGATTCATTGCTGCTGTG+AGG | - | chr4.3:1629716-1629735 | MS.gene29964:intron | 40.0% | |
| ! | TGGTGTCCATGTATCACTTT+TGG | - | chr4.3:1629169-1629188 | MS.gene29964:intron | 40.0% |
| AGAGCAGCAATCACAAAGAC+CGG | + | chr4.3:1628969-1628988 | None:intergenic | 45.0% | |
| CCAGCATACAATCAACCACA+AGG | - | chr4.3:1628824-1628843 | MS.gene29964:CDS | 45.0% | |
| CCTTGTGGTTGATTGTATGC+TGG | + | chr4.3:1628827-1628846 | None:intergenic | 45.0% | |
| GGCATGGAAATGTTGAGCAA+CGG | - | chr4.3:1629879-1629898 | MS.gene29964:CDS | 45.0% | |
| GTGAATGGGTGTCTTACAAG+TGG | + | chr4.3:1629224-1629243 | None:intergenic | 45.0% | |
| TAGCTACAACAGCGCTACAT+CGG | - | chr4.3:1628868-1628887 | MS.gene29964:CDS | 45.0% | |
| TATCGTGAGCTTGAAAACCG+TGG | - | chr4.3:1629759-1629778 | MS.gene29964:intron | 45.0% | |
| TCAACTAGAGGTTTAGGAGG+AGG | + | chr4.3:1628938-1628957 | None:intergenic | 45.0% | |
| TGAACTTGGAATGGATAGGG+TGG | - | chr4.3:1629858-1629877 | MS.gene29964:CDS | 45.0% | |
| ! | GGTTTTGCATTTGCAGCATG+TGG | - | chr4.3:1629570-1629589 | MS.gene29964:CDS | 45.0% |
| !! | AATGTTGAGCAACGGACTAG+AGG | - | chr4.3:1629887-1629906 | MS.gene29964:CDS | 45.0% |
| !! | ACGGACTAGAGGAATAGCAA+TGG | - | chr4.3:1629898-1629917 | MS.gene29964:CDS | 45.0% |
| !!! | ATGGGGGACATACTTTTTCC+AGG | + | chr4.3:1628995-1629014 | None:intergenic | 45.0% |
| !!! | TGGGGGACATACTTTTTCCA+GGG | + | chr4.3:1628994-1629013 | None:intergenic | 45.0% |
| !! | TTATTATGTATTATTAAATT+TGG | + | chr4.3:1629360-1629379 | None:intergenic | 5.0% |
| ACAGCTCCAGCAGTTGAACA+AGG | - | chr4.3:1629932-1629951 | MS.gene29964:CDS | 50.0% | |
| ACTAGAGGTTTAGGAGGAGG+AGG | + | chr4.3:1628935-1628954 | None:intergenic | 50.0% | |
| AGCTACAACAGCGCTACATC+GGG | - | chr4.3:1628869-1628888 | MS.gene29964:CDS | 50.0% | |
| CCTCTAGTTGAATGGTCCAC+CGG | - | chr4.3:1628947-1628966 | MS.gene29964:intron | 50.0% | |
| GTAGCGCTGTTGTAGCTAAC+CGG | + | chr4.3:1628866-1628885 | None:intergenic | 50.0% | |
| GTAGCTAACCGGAAAACCTG+TGG | + | chr4.3:1628855-1628874 | None:intergenic | 50.0% | |
| TGTGATTGCTGCTCTAACCC+TGG | - | chr4.3:1628974-1628993 | MS.gene29964:CDS | 50.0% | |
| TTGGAATGGATAGGGTGGCA+TGG | - | chr4.3:1629863-1629882 | MS.gene29964:CDS | 50.0% | |
| ! | CTCATGCCTTGTTCAACTGC+TGG | + | chr4.3:1629941-1629960 | None:intergenic | 50.0% |
| ! | TTGCAGCATGTGGTGCTAGT+GGG | - | chr4.3:1629580-1629599 | MS.gene29964:CDS | 50.0% |
| ! | TTTGCAGCATGTGGTGCTAG+TGG | - | chr4.3:1629579-1629598 | MS.gene29964:CDS | 50.0% |
| !! | TATGCTGGCTTTCCATCCTC+TGG | + | chr4.3:1628812-1628831 | None:intergenic | 50.0% |
| AAACCTGTGGCAGCTCCTTG+TGG | + | chr4.3:1628842-1628861 | None:intergenic | 55.0% | |
| AGAGGTTTAGGAGGAGGAGG+AGG | + | chr4.3:1628932-1628951 | None:intergenic | 55.0% | |
| CCGGTGGACCATTCAACTAG+AGG | + | chr4.3:1628950-1628969 | None:intergenic | 55.0% | |
| CGCGTAATCTGATGAGGCAC+CGG | + | chr4.3:1628900-1628919 | None:intergenic | 55.0% | |
| GCAGCAATCACAAAGACCGG+TGG | + | chr4.3:1628966-1628985 | None:intergenic | 55.0% | |
| GCTACAACAGCGCTACATCG+GGG | - | chr4.3:1628870-1628889 | MS.gene29964:CDS | 55.0% | |
| ! | AGGAGCTGCCACAGGTTTTC+CGG | - | chr4.3:1628844-1628863 | MS.gene29964:CDS | 55.0% |
| ! | AGGAGGCGCGTAATCTGATG+AGG | + | chr4.3:1628906-1628925 | None:intergenic | 55.0% |
| ! | TGCAGCATGTGGTGCTAGTG+GGG | - | chr4.3:1629581-1629600 | MS.gene29964:CDS | 55.0% |
| CAACCACAAGGAGCTGCCAC+AGG | - | chr4.3:1628836-1628855 | MS.gene29964:CDS | 60.0% | |
| GGTTTAGGAGGAGGAGGAGG+AGG | + | chr4.3:1628929-1628948 | None:intergenic | 60.0% | |
| TTAGGAGGAGGAGGAGGAGG+AGG | + | chr4.3:1628926-1628945 | None:intergenic | 60.0% | |
| ! | AGCGCTACATCGGGGTACTC+CGG | - | chr4.3:1628878-1628897 | MS.gene29964:intron | 60.0% |
| GGAGGAGGAGGAGGAGGAGG+AGG | + | chr4.3:1628920-1628939 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1628800 | 1629967 | 1628800 | ID=MS.gene29964 |
| chr4.3 | mRNA | 1628800 | 1629967 | 1628800 | ID=MS.gene29964.t1;Parent=MS.gene29964 |
| chr4.3 | exon | 1629766 | 1629967 | 1629766 | ID=MS.gene29964.t1.exon1;Parent=MS.gene29964.t1 |
| chr4.3 | CDS | 1629766 | 1629967 | 1629766 | ID=cds.MS.gene29964.t1;Parent=MS.gene29964.t1 |
| chr4.3 | exon | 1629541 | 1629612 | 1629541 | ID=MS.gene29964.t1.exon2;Parent=MS.gene29964.t1 |
| chr4.3 | CDS | 1629541 | 1629612 | 1629541 | ID=cds.MS.gene29964.t1;Parent=MS.gene29964.t1 |
| chr4.3 | exon | 1628969 | 1629181 | 1628969 | ID=MS.gene29964.t1.exon3;Parent=MS.gene29964.t1 |
| chr4.3 | CDS | 1628969 | 1629181 | 1628969 | ID=cds.MS.gene29964.t1;Parent=MS.gene29964.t1 |
| chr4.3 | exon | 1628800 | 1628891 | 1628800 | ID=MS.gene29964.t1.exon4;Parent=MS.gene29964.t1 |
| chr4.3 | CDS | 1628800 | 1628891 | 1628800 | ID=cds.MS.gene29964.t1;Parent=MS.gene29964.t1 |
| Gene Sequence |
| Protein sequence |
