Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29965.t1 | XP_003630911.1 | 97.6 | 170 | 3 | 1 | 1 | 170 | 1 | 169 | 2.20E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29965.t1 | Q9LQU4 | 64.6 | 147 | 49 | 3 | 26 | 170 | 7 | 152 | 3.5e-51 | 202.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29965.t1 | G7LAH9 | 97.6 | 170 | 3 | 1 | 1 | 170 | 1 | 169 | 1.6e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049312 | MS.gene29965 | 0.811637 | 6.34E-51 | -1.69E-46 |
| MS.gene050129 | MS.gene29965 | 0.800242 | 1.58E-48 | -1.69E-46 |
| MS.gene050363 | MS.gene29965 | 0.848138 | 7.42E-60 | -1.69E-46 |
| MS.gene050380 | MS.gene29965 | 0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene29965 | 0.874847 | 4.90E-68 | -1.69E-46 |
| MS.gene050504 | MS.gene29965 | -0.800221 | 1.60E-48 | -1.69E-46 |
| MS.gene050883 | MS.gene29965 | 0.837917 | 3.92E-57 | -1.69E-46 |
| MS.gene051127 | MS.gene29965 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene05141 | MS.gene29965 | 0.844064 | 9.53E-59 | -1.69E-46 |
| MS.gene051946 | MS.gene29965 | 0.829867 | 4.05E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene29965 | 0.806876 | 6.65E-50 | -1.69E-46 |
| MS.gene053549 | MS.gene29965 | 0.819617 | 1.06E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene29965 | 0.843905 | 1.05E-58 | -1.69E-46 |
| MS.gene054616 | MS.gene29965 | 0.832867 | 7.40E-56 | -1.69E-46 |
| MS.gene054708 | MS.gene29965 | 0.833332 | 5.67E-56 | -1.69E-46 |
| MS.gene055124 | MS.gene29965 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene29965 | 0.824194 | 9.21E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene29965 | 0.815174 | 1.06E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene29965 | -0.801333 | 9.46E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene29965 | 0.863377 | 2.60E-64 | -1.69E-46 |
| MS.gene056311 | MS.gene29965 | 0.86201 | 6.86E-64 | -1.69E-46 |
| MS.gene056313 | MS.gene29965 | 0.865343 | 6.33E-65 | -1.69E-46 |
| MS.gene056408 | MS.gene29965 | 0.813518 | 2.46E-51 | -1.69E-46 |
| MS.gene056550 | MS.gene29965 | 0.819121 | 1.37E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene29965 | 0.839085 | 1.96E-57 | -1.69E-46 |
| MS.gene058171 | MS.gene29965 | 0.800478 | 1.41E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene29965 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene29965 | -0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene29965 | 0.806816 | 6.85E-50 | -1.69E-46 |
| MS.gene059691 | MS.gene29965 | 0.803449 | 3.47E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene29965 | 0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene059697 | MS.gene29965 | 0.812752 | 3.62E-51 | -1.69E-46 |
| MS.gene059916 | MS.gene29965 | 0.813967 | 1.96E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene29965 | -0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene29965 | 0.804231 | 2.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29965 | MS.gene015684 | PPI |
| MS.gene29965 | MS.gene015683 | PPI |
| MS.gene041113 | MS.gene29965 | PPI |
| MS.gene29964 | MS.gene29965 | PPI |
| MS.gene010381 | MS.gene29965 | PPI |
| MS.gene020495 | MS.gene29965 | PPI |
| MS.gene020496 | MS.gene29965 | PPI |
| MS.gene29965 | MS.gene047654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29965.t1 | MTR_8g104890 | 97.647 | 170 | 3 | 1 | 1 | 170 | 1 | 169 | 5.38e-123 | 343 |
| MS.gene29965.t1 | MTR_5g017650 | 60.227 | 176 | 50 | 3 | 1 | 156 | 1 | 176 | 4.81e-68 | 205 |
| MS.gene29965.t1 | MTR_8g104870 | 63.190 | 163 | 42 | 3 | 12 | 156 | 11 | 173 | 1.40e-65 | 199 |
| MS.gene29965.t1 | MTR_4g086330 | 50.602 | 166 | 71 | 2 | 14 | 170 | 34 | 197 | 2.85e-53 | 168 |
| MS.gene29965.t1 | MTR_8g104830 | 50.714 | 140 | 66 | 3 | 30 | 167 | 4 | 142 | 6.17e-43 | 140 |
| MS.gene29965.t1 | MTR_4g086320 | 56.667 | 120 | 51 | 1 | 25 | 144 | 42 | 160 | 1.45e-42 | 139 |
| MS.gene29965.t1 | MTR_2g101660 | 33.728 | 169 | 109 | 1 | 5 | 170 | 3 | 171 | 4.68e-31 | 110 |
| MS.gene29965.t1 | MTR_6g084940 | 43.066 | 137 | 74 | 3 | 34 | 170 | 17 | 149 | 1.39e-29 | 106 |
| MS.gene29965.t1 | MTR_1g075550 | 53.509 | 114 | 52 | 1 | 34 | 147 | 11 | 123 | 4.45e-26 | 97.1 |
| MS.gene29965.t1 | MTR_5g008240 | 39.416 | 137 | 68 | 4 | 21 | 142 | 27 | 163 | 4.01e-24 | 93.2 |
| MS.gene29965.t1 | MTR_5g008240 | 37.956 | 137 | 70 | 3 | 21 | 142 | 69 | 205 | 7.79e-24 | 93.6 |
| MS.gene29965.t1 | MTR_5g008240 | 37.956 | 137 | 70 | 3 | 21 | 142 | 93 | 229 | 9.69e-24 | 94.0 |
| MS.gene29965.t1 | MTR_2g101660 | 36.585 | 123 | 75 | 1 | 51 | 170 | 1 | 123 | 1.04e-23 | 90.5 |
| MS.gene29965.t1 | MTR_7g044840 | 31.655 | 139 | 65 | 3 | 28 | 137 | 53 | 190 | 5.10e-19 | 81.3 |
| MS.gene29965.t1 | MTR_0172s0050 | 32.414 | 145 | 64 | 4 | 29 | 140 | 57 | 200 | 1.02e-15 | 72.4 |
| MS.gene29965.t1 | MTR_3g408350 | 27.972 | 143 | 64 | 2 | 29 | 137 | 53 | 190 | 9.55e-15 | 69.7 |
| MS.gene29965.t1 | MTR_5g008240 | 40.741 | 108 | 49 | 4 | 50 | 142 | 38 | 145 | 1.34e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29965.t1 | AT1G14870 | 64.626 | 147 | 49 | 3 | 26 | 170 | 7 | 152 | 4.68e-63 | 191 |
| MS.gene29965.t1 | AT5G35525 | 64.029 | 139 | 48 | 2 | 29 | 166 | 10 | 147 | 9.47e-60 | 183 |
| MS.gene29965.t1 | AT1G14870 | 68.067 | 119 | 38 | 0 | 26 | 144 | 7 | 125 | 2.07e-57 | 176 |
| MS.gene29965.t1 | AT1G14880 | 59.864 | 147 | 56 | 3 | 26 | 170 | 6 | 151 | 3.62e-55 | 171 |
| MS.gene29965.t1 | AT1G49030 | 48.428 | 159 | 71 | 4 | 5 | 160 | 66 | 216 | 1.10e-45 | 149 |
| MS.gene29965.t1 | AT1G68610 | 56.934 | 137 | 56 | 2 | 33 | 166 | 17 | 153 | 5.91e-45 | 145 |
| MS.gene29965.t1 | AT3G18470 | 50.388 | 129 | 59 | 1 | 32 | 160 | 2 | 125 | 1.06e-42 | 139 |
| MS.gene29965.t1 | AT3G18460 | 50.685 | 146 | 63 | 4 | 18 | 162 | 42 | 179 | 1.24e-42 | 140 |
| MS.gene29965.t1 | AT3G18450 | 46.358 | 151 | 74 | 3 | 10 | 160 | 33 | 176 | 2.10e-42 | 140 |
| MS.gene29965.t1 | AT1G58320 | 50.413 | 121 | 56 | 3 | 34 | 153 | 16 | 133 | 1.15e-36 | 124 |
| MS.gene29965.t1 | AT1G52200 | 39.535 | 172 | 94 | 4 | 9 | 170 | 19 | 190 | 6.11e-34 | 118 |
| MS.gene29965.t1 | AT1G52200 | 39.583 | 144 | 79 | 2 | 9 | 144 | 19 | 162 | 2.17e-28 | 104 |
| MS.gene29965.t1 | AT1G68630 | 38.298 | 141 | 82 | 2 | 26 | 162 | 16 | 155 | 3.10e-28 | 103 |
| MS.gene29965.t1 | AT2G40935 | 34.028 | 144 | 73 | 4 | 22 | 144 | 34 | 176 | 4.90e-22 | 88.2 |
| MS.gene29965.t1 | AT2G40935 | 34.028 | 144 | 73 | 4 | 22 | 144 | 34 | 176 | 4.90e-22 | 88.2 |
| MS.gene29965.t1 | AT2G40935 | 34.028 | 144 | 73 | 4 | 22 | 144 | 34 | 176 | 4.90e-22 | 88.2 |
| MS.gene29965.t1 | AT2G40935 | 34.028 | 144 | 73 | 4 | 22 | 144 | 34 | 176 | 4.90e-22 | 88.2 |
| MS.gene29965.t1 | AT2G40935 | 34.028 | 144 | 73 | 4 | 22 | 144 | 34 | 176 | 4.90e-22 | 88.2 |
| MS.gene29965.t1 | AT2G45010 | 33.103 | 145 | 66 | 4 | 28 | 142 | 9 | 152 | 9.41e-20 | 82.4 |
| MS.gene29965.t1 | AT2G45010 | 33.103 | 145 | 66 | 4 | 28 | 142 | 55 | 198 | 1.27e-19 | 82.8 |
| MS.gene29965.t1 | AT5G51400 | 30.921 | 152 | 73 | 5 | 19 | 140 | 47 | 196 | 1.41e-17 | 77.4 |
| MS.gene29965.t1 | AT2G40935 | 31.250 | 144 | 66 | 5 | 22 | 144 | 34 | 165 | 5.73e-16 | 72.0 |
| MS.gene29965.t1 | AT2G40935 | 35.345 | 116 | 53 | 4 | 50 | 144 | 38 | 152 | 1.32e-14 | 68.2 |
| MS.gene29965.t1 | AT2G40935 | 35.345 | 116 | 53 | 4 | 50 | 144 | 38 | 152 | 1.32e-14 | 68.2 |
| MS.gene29965.t1 | AT2G40935 | 35.345 | 116 | 53 | 4 | 50 | 144 | 38 | 152 | 1.32e-14 | 68.2 |
Find 48 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCATTCCTGGTTGGCATT+AGG | 0.310976 | 4.3:+1623883 | None:intergenic |
| GCCACCAGCCACCGGTTTCC+CGG | 0.332845 | 4.3:-1623926 | MS.gene29965:CDS |
| CCTGGTTGGCATTAGGTTGT+TGG | 0.349397 | 4.3:+1623890 | None:intergenic |
| ATAGACCCGTGGACCATTCC+TGG | 0.365914 | 4.3:+1623872 | None:intergenic |
| CGTGGATTTGACATGGAACT+TGG | 0.398558 | 4.3:-1623365 | MS.gene29965:intron |
| GCCTACGTTCACCGGGAAAC+CGG | 0.412709 | 4.3:+1623915 | None:intergenic |
| ATTTGTTGTGTGACGGGTTG+TGG | 0.418139 | 4.3:-1623524 | MS.gene29965:CDS |
| TGTTGGTGGCCTACGTTCAC+CGG | 0.423504 | 4.3:+1623907 | None:intergenic |
| TGGTGTCCATGCATCACCTT+TGG | 0.426284 | 4.3:-1623706 | MS.gene29965:CDS |
| TTGCAGCTTGTGCTGTAAGC+GGG | 0.457897 | 4.3:-1623562 | MS.gene29965:intron |
| TACATTAATTTGTTGTGTGA+CGG | 0.462544 | 4.3:-1623531 | MS.gene29965:CDS |
| TGCTGGAGCTGTTGGTGCCA+TGG | 0.464678 | 4.3:+1622948 | None:intergenic |
| GTGGCTGATTGTACGGTTGT+TGG | 0.466033 | 4.3:+1623944 | None:intergenic |
| TGTTCAACTGCTGGAGCTGT+TGG | 0.477230 | 4.3:+1622940 | None:intergenic |
| CGAGTCATGTGTTCAACTGC+TGG | 0.481564 | 4.3:+1622931 | None:intergenic |
| ACATTAATTTGTTGTGTGAC+GGG | 0.489462 | 4.3:-1623530 | MS.gene29965:CDS |
| AAATGTGGCACAAGGGAACC+AGG | 0.489547 | 4.3:-1622977 | MS.gene29965:CDS |
| GGTTGGCATTAGGTTGTTGG+TGG | 0.517094 | 4.3:+1623893 | None:intergenic |
| GTGGCTGGTGGCTGATTGTA+CGG | 0.517478 | 4.3:+1623937 | None:intergenic |
| TTGGTGCCATGGCTACTCCC+TGG | 0.530182 | 4.3:+1622959 | None:intergenic |
| AACCTAATGCCAACCAGGAA+TGG | 0.530457 | 4.3:-1623885 | MS.gene29965:CDS |
| GCCAACCAGGAATGGTCCAC+GGG | 0.546652 | 4.3:-1623877 | MS.gene29965:CDS |
| GTTGGTGGCCTACGTTCACC+GGG | 0.550874 | 4.3:+1623908 | None:intergenic |
| TTCACCGGGAAACCGGTGGC+TGG | 0.551343 | 4.3:+1623922 | None:intergenic |
| ACCGGGAAACCGGTGGCTGG+TGG | 0.560600 | 4.3:+1623925 | None:intergenic |
| TACAATCAGCCACCAGCCAC+CGG | 0.567328 | 4.3:-1623934 | MS.gene29965:CDS |
| ATTGCAGCTTGTGCTGTAAG+CGG | 0.567979 | 4.3:-1623563 | MS.gene29965:intron |
| AAATTGGCTATAGGGTGGCA+TGG | 0.569669 | 4.3:-1623000 | MS.gene29965:intron |
| CCAACAACCTAATGCCAACC+AGG | 0.574274 | 4.3:-1623890 | MS.gene29965:CDS |
| TGGCATGGAAATGTGGCACA+AGG | 0.574561 | 4.3:-1622985 | MS.gene29965:CDS |
| TGCCAACCAGGAATGGTCCA+CGG | 0.582618 | 4.3:-1623878 | MS.gene29965:CDS |
| TGCAGCTTGTGCTGTAAGCG+GGG | 0.590429 | 4.3:-1623561 | MS.gene29965:intron |
| AATCTCAGCAATTCGTCCAA+AGG | 0.597233 | 4.3:+1623690 | None:intergenic |
| ATTCGTCCAAAGGTGATGCA+TGG | 0.598061 | 4.3:+1623700 | None:intergenic |
| TGAAAACCGTGGATTTGACA+TGG | 0.599587 | 4.3:-1623372 | MS.gene29965:CDS |
| ACCCGTGGACCATTCCTGGT+TGG | 0.600890 | 4.3:+1623876 | None:intergenic |
| AATTGCTGAGATTGTTGACA+AGG | 0.603304 | 4.3:-1623680 | MS.gene29965:CDS |
| TATAGGGTGGCATGGAAATG+TGG | 0.605383 | 4.3:-1622992 | MS.gene29965:intron |
| AGGGAACCAGGGAGTAGCCA+TGG | 0.614002 | 4.3:-1622965 | MS.gene29965:CDS |
| CAAGTTCCATGTCAAATCCA+CGG | 0.615456 | 4.3:+1623366 | None:intergenic |
| TACGTTCACCGGGAAACCGG+TGG | 0.615540 | 4.3:+1623918 | None:intergenic |
| AATGTGGCACAAGGGAACCA+GGG | 0.650557 | 4.3:-1622976 | MS.gene29965:CDS |
| GGCATGGAAATGTGGCACAA+GGG | 0.652763 | 4.3:-1622984 | MS.gene29965:CDS |
| TGAACTAAGCAATCACAACA+AGG | 0.663046 | 4.3:+1623440 | None:intergenic |
| ATTGCTGAGATTGTTGACAA+GGG | 0.678367 | 4.3:-1623679 | MS.gene29965:CDS |
| ACCGGTTTCCCGGTGAACGT+AGG | 0.680377 | 4.3:-1623916 | MS.gene29965:CDS |
| TATCGTGAGCTTGAAAACCG+TGG | 0.692905 | 4.3:-1623383 | MS.gene29965:CDS |
| GAAGCAGTCAAATAGACCCG+TGG | 0.701710 | 4.3:+1623861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTAAAATTTAGAAG+AGG | + | chr4.3:1623125-1623144 | None:intergenic | 10.0% |
| !! | TAGTTATATATCATTATTAA+TGG | + | chr4.3:1623270-1623289 | None:intergenic | 10.0% |
| !!! | TAAATTTCATTTCATTTTTT+AGG | - | chr4.3:1623152-1623171 | MS.gene29965:intron | 10.0% |
| !!! | TCTCTTAAATTTTTTATTTA+AGG | - | chr4.3:1623671-1623690 | MS.gene29965:CDS | 10.0% |
| !!! | ATCTTAATTCTTTTATCTTT+TGG | - | chr4.3:1623586-1623605 | MS.gene29965:intron | 15.0% |
| !! | CTTGTAAGATATTCATTAAT+TGG | - | chr4.3:1623243-1623262 | MS.gene29965:intron | 20.0% |
| !! | TTAGAAGAGGAATTAATTAA+TGG | + | chr4.3:1623112-1623131 | None:intergenic | 20.0% |
| !!! | ATTTATTTGAAATTGGCTAT+AGG | - | chr4.3:1623885-1623904 | MS.gene29965:CDS | 20.0% |
| !!! | TTTATTTGAAATTGGCTATA+GGG | - | chr4.3:1623886-1623905 | MS.gene29965:CDS | 20.0% |
| ! | AAGAGGAATTAATTAATGGA+CGG | + | chr4.3:1623108-1623127 | None:intergenic | 25.0% |
| ! | GTTCTAATTACCACTTAATT+TGG | - | chr4.3:1623081-1623100 | MS.gene29965:intron | 25.0% |
| !! | ATTGTTGTCTCATTTTGTTA+CGG | + | chr4.3:1623417-1623436 | None:intergenic | 25.0% |
| !!! | TACATTAATTTGTTGTGTGA+CGG | - | chr4.3:1623363-1623382 | MS.gene29965:intron | 25.0% |
| ! | TAACATACAAGTTTTGCAGT+CGG | + | chr4.3:1623060-1623079 | None:intergenic | 30.0% |
| ! | TCGACAATTCAATGTTTCTA+TGG | - | chr4.3:1623629-1623648 | MS.gene29965:intron | 30.0% |
| !! | ACATTAATTTGTTGTGTGAC+GGG | - | chr4.3:1623364-1623383 | MS.gene29965:intron | 30.0% |
| AATTGCTGAGATTGTTGACA+AGG | - | chr4.3:1623214-1623233 | MS.gene29965:intron | 35.0% | |
| ATTGCTGAGATTGTTGACAA+GGG | - | chr4.3:1623215-1623234 | MS.gene29965:intron | 35.0% | |
| TGAACTAAGCAATCACAACA+AGG | + | chr4.3:1623457-1623476 | None:intergenic | 35.0% | |
| ! | ATTTGAAATTGGCTATAGGG+TGG | - | chr4.3:1623889-1623908 | MS.gene29965:CDS | 35.0% |
| ! | GGTTGTTGGAATTTTGAACT+TGG | + | chr4.3:1622939-1622958 | None:intergenic | 35.0% |
| ! | TGTTGGAATTTTGAACTTGG+AGG | + | chr4.3:1622936-1622955 | None:intergenic | 35.0% |
| !!! | TTTTAGGTTGCATAACGTTC+TGG | - | chr4.3:1623168-1623187 | MS.gene29965:intron | 35.0% |
| AATCTCAGCAATTCGTCCAA+AGG | + | chr4.3:1623207-1623226 | None:intergenic | 40.0% | |
| AATGGACGGTCCAAATTAAG+TGG | + | chr4.3:1623094-1623113 | None:intergenic | 40.0% | |
| ATTTGTACCATTGTCGCATC+TGG | - | chr4.3:1623819-1623838 | MS.gene29965:intron | 40.0% | |
| CAAGTTCCATGTCAAATCCA+CGG | + | chr4.3:1623531-1623550 | None:intergenic | 40.0% | |
| TGAAAACCGTGGATTTGACA+TGG | - | chr4.3:1623522-1623541 | MS.gene29965:CDS | 40.0% | |
| AAATTGGCTATAGGGTGGCA+TGG | - | chr4.3:1623894-1623913 | MS.gene29965:CDS | 45.0% | |
| AACCTAATGCCAACCAGGAA+TGG | - | chr4.3:1623009-1623028 | MS.gene29965:intron | 45.0% | |
| AACTCATCCAGATGCGACAA+TGG | + | chr4.3:1623829-1623848 | None:intergenic | 45.0% | |
| ATTCGTCCAAAGGTGATGCA+TGG | + | chr4.3:1623197-1623216 | None:intergenic | 45.0% | |
| ATTGCAGCTTGTGCTGTAAG+CGG | - | chr4.3:1623331-1623350 | MS.gene29965:intron | 45.0% | |
| CGTGGATTTGACATGGAACT+TGG | - | chr4.3:1623529-1623548 | MS.gene29965:CDS | 45.0% | |
| TATAGGGTGGCATGGAAATG+TGG | - | chr4.3:1623902-1623921 | MS.gene29965:CDS | 45.0% | |
| TATCGTGAGCTTGAAAACCG+TGG | - | chr4.3:1623511-1623530 | MS.gene29965:CDS | 45.0% | |
| !! | ATTTGTTGTGTGACGGGTTG+TGG | - | chr4.3:1623370-1623389 | MS.gene29965:CDS | 45.0% |
| !!! | TTAATTTATTTATTTGAAAT+TGG | - | chr4.3:1623878-1623897 | MS.gene29965:CDS | 5.0% |
| AAATGTGGCACAAGGGAACC+AGG | - | chr4.3:1623917-1623936 | MS.gene29965:CDS | 50.0% | |
| AATGTGGCACAAGGGAACCA+GGG | - | chr4.3:1623918-1623937 | MS.gene29965:CDS | 50.0% | |
| CCAACAACCTAATGCCAACC+AGG | - | chr4.3:1623004-1623023 | MS.gene29965:intron | 50.0% | |
| CGAGTCATGTGTTCAACTGC+TGG | + | chr4.3:1623966-1623985 | None:intergenic | 50.0% | |
| GAAGCAGTCAAATAGACCCG+TGG | + | chr4.3:1623036-1623055 | None:intergenic | 50.0% | |
| GACCATTCCTGGTTGGCATT+AGG | + | chr4.3:1623014-1623033 | None:intergenic | 50.0% | |
| GGCATGGAAATGTGGCACAA+GGG | - | chr4.3:1623910-1623929 | MS.gene29965:CDS | 50.0% | |
| GTGGCTGATTGTACGGTTGT+TGG | + | chr4.3:1622953-1622972 | None:intergenic | 50.0% | |
| TGGCATGGAAATGTGGCACA+AGG | - | chr4.3:1623909-1623928 | MS.gene29965:CDS | 50.0% | |
| TGGTGTCCATGCATCACCTT+TGG | - | chr4.3:1623188-1623207 | MS.gene29965:intron | 50.0% | |
| TGTTCAACTGCTGGAGCTGT+TGG | + | chr4.3:1623957-1623976 | None:intergenic | 50.0% | |
| TTGCAGCTTGTGCTGTAAGC+GGG | - | chr4.3:1623332-1623351 | MS.gene29965:intron | 50.0% | |
| ! | CCTGGTTGGCATTAGGTTGT+TGG | + | chr4.3:1623007-1623026 | None:intergenic | 50.0% |
| ! | GGTTGGCATTAGGTTGTTGG+TGG | + | chr4.3:1623004-1623023 | None:intergenic | 50.0% |
| ATAGACCCGTGGACCATTCC+TGG | + | chr4.3:1623025-1623044 | None:intergenic | 55.0% | |
| GTGGCTGGTGGCTGATTGTA+CGG | + | chr4.3:1622960-1622979 | None:intergenic | 55.0% | |
| TACAATCAGCCACCAGCCAC+CGG | - | chr4.3:1622960-1622979 | MS.gene29965:CDS | 55.0% | |
| TGCAGCTTGTGCTGTAAGCG+GGG | - | chr4.3:1623333-1623352 | MS.gene29965:intron | 55.0% | |
| TGCCAACCAGGAATGGTCCA+CGG | - | chr4.3:1623016-1623035 | MS.gene29965:intron | 55.0% | |
| !! | TGTTGGTGGCCTACGTTCAC+CGG | + | chr4.3:1622990-1623009 | None:intergenic | 55.0% |
| ACCCGTGGACCATTCCTGGT+TGG | + | chr4.3:1623021-1623040 | None:intergenic | 60.0% | |
| AGGGAACCAGGGAGTAGCCA+TGG | - | chr4.3:1623929-1623948 | MS.gene29965:CDS | 60.0% | |
| GCCAACCAGGAATGGTCCAC+GGG | - | chr4.3:1623017-1623036 | MS.gene29965:intron | 60.0% | |
| GCCTACGTTCACCGGGAAAC+CGG | + | chr4.3:1622982-1623001 | None:intergenic | 60.0% | |
| TACGTTCACCGGGAAACCGG+TGG | + | chr4.3:1622979-1622998 | None:intergenic | 60.0% | |
| ! | ACCGGTTTCCCGGTGAACGT+AGG | - | chr4.3:1622978-1622997 | MS.gene29965:CDS | 60.0% |
| !! | GTTGGTGGCCTACGTTCACC+GGG | + | chr4.3:1622989-1623008 | None:intergenic | 60.0% |
| !! | TGCTGGAGCTGTTGGTGCCA+TGG | + | chr4.3:1623949-1623968 | None:intergenic | 60.0% |
| !! | TTGGTGCCATGGCTACTCCC+TGG | + | chr4.3:1623938-1623957 | None:intergenic | 60.0% |
| TTCACCGGGAAACCGGTGGC+TGG | + | chr4.3:1622975-1622994 | None:intergenic | 65.0% | |
| ACCGGGAAACCGGTGGCTGG+TGG | + | chr4.3:1622972-1622991 | None:intergenic | 70.0% | |
| !! | GCCACCAGCCACCGGTTTCC+CGG | - | chr4.3:1622968-1622987 | MS.gene29965:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1622927 | 1623989 | 1622927 | ID=MS.gene29965 |
| chr4.3 | mRNA | 1622927 | 1623989 | 1622927 | ID=MS.gene29965.t1;Parent=MS.gene29965 |
| chr4.3 | exon | 1623845 | 1623989 | 1623845 | ID=MS.gene29965.t1.exon1;Parent=MS.gene29965.t1 |
| chr4.3 | CDS | 1623845 | 1623989 | 1623845 | ID=cds.MS.gene29965.t1;Parent=MS.gene29965.t1 |
| chr4.3 | exon | 1623671 | 1623742 | 1623671 | ID=MS.gene29965.t1.exon2;Parent=MS.gene29965.t1 |
| chr4.3 | CDS | 1623671 | 1623742 | 1623671 | ID=cds.MS.gene29965.t1;Parent=MS.gene29965.t1 |
| chr4.3 | exon | 1623366 | 1623578 | 1623366 | ID=MS.gene29965.t1.exon3;Parent=MS.gene29965.t1 |
| chr4.3 | CDS | 1623366 | 1623578 | 1623366 | ID=cds.MS.gene29965.t1;Parent=MS.gene29965.t1 |
| chr4.3 | exon | 1622927 | 1623009 | 1622927 | ID=MS.gene29965.t1.exon4;Parent=MS.gene29965.t1 |
| chr4.3 | CDS | 1622927 | 1623009 | 1622927 | ID=cds.MS.gene29965.t1;Parent=MS.gene29965.t1 |
| Gene Sequence |
| Protein sequence |
