Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020495.t1 | XP_003630909.1 | 92.2 | 193 | 12 | 2 | 1 | 192 | 1 | 191 | 5.20E-95 | 357.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020495.t1 | Q9LQU4 | 64.1 | 142 | 45 | 2 | 53 | 192 | 15 | 152 | 5.2e-51 | 202.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020495.t1 | G7LAH7 | 92.2 | 193 | 12 | 2 | 1 | 192 | 1 | 191 | 3.8e-95 | 357.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020495 | MS.gene041113 | PPI |
MS.gene020495 | MS.gene010381 | PPI |
MS.gene29964 | MS.gene020495 | PPI |
MS.gene020495 | MS.gene29965 | PPI |
MS.gene020495 | MS.gene020496 | PPI |
MS.gene020495 | MS.gene047654 | PPI |
MS.gene020496 | MS.gene020495 | PPI |
MS.gene020495 | MS.gene015684 | PPI |
MS.gene020495 | MS.gene015683 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020495.t1 | MTR_8g104870 | 93.264 | 193 | 10 | 2 | 1 | 192 | 1 | 191 | 3.73e-116 | 328 |
MS.gene020495.t1 | MTR_5g017650 | 91.146 | 192 | 11 | 2 | 4 | 192 | 5 | 193 | 1.22e-109 | 311 |
MS.gene020495.t1 | MTR_8g104890 | 62.088 | 182 | 45 | 4 | 11 | 192 | 12 | 169 | 2.37e-61 | 188 |
MS.gene020495.t1 | MTR_4g086330 | 52.593 | 135 | 64 | 0 | 53 | 187 | 63 | 197 | 4.96e-50 | 160 |
MS.gene020495.t1 | MTR_4g086320 | 55.856 | 111 | 49 | 0 | 53 | 163 | 50 | 160 | 1.72e-41 | 137 |
MS.gene020495.t1 | MTR_8g104830 | 47.518 | 141 | 69 | 3 | 54 | 192 | 9 | 146 | 9.96e-40 | 132 |
MS.gene020495.t1 | MTR_6g084940 | 40.741 | 162 | 81 | 4 | 32 | 192 | 2 | 149 | 1.66e-30 | 109 |
MS.gene020495.t1 | MTR_1g075550 | 53.333 | 120 | 51 | 2 | 47 | 166 | 9 | 123 | 3.51e-28 | 103 |
MS.gene020495.t1 | MTR_2g101660 | 36.691 | 139 | 88 | 0 | 54 | 192 | 33 | 171 | 1.39e-27 | 102 |
MS.gene020495.t1 | MTR_2g101660 | 34.959 | 123 | 80 | 0 | 70 | 192 | 1 | 123 | 9.88e-22 | 85.9 |
MS.gene020495.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 53 | 192 | 40 | 186 | 4.12e-17 | 75.9 |
MS.gene020495.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 53 | 192 | 82 | 228 | 4.59e-17 | 76.3 |
MS.gene020495.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 53 | 192 | 106 | 252 | 8.46e-17 | 76.3 |
MS.gene020495.t1 | MTR_5g022670 | 34.579 | 107 | 69 | 1 | 53 | 159 | 294 | 399 | 9.68e-13 | 65.9 |
MS.gene020495.t1 | MTR_5g008240 | 32.624 | 141 | 72 | 5 | 67 | 192 | 36 | 168 | 2.39e-12 | 62.8 |
MS.gene020495.t1 | MTR_8g075150 | 35.238 | 105 | 67 | 1 | 53 | 157 | 301 | 404 | 8.62e-12 | 63.2 |
MS.gene020495.t1 | MTR_7g044840 | 25.564 | 133 | 69 | 3 | 53 | 156 | 59 | 190 | 1.32e-11 | 61.6 |
MS.gene020495.t1 | MTR_0172s0050 | 29.747 | 158 | 70 | 7 | 39 | 163 | 55 | 204 | 4.15e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020495.t1 | AT1G14870 | 61.745 | 149 | 51 | 2 | 46 | 192 | 8 | 152 | 2.47e-62 | 190 |
MS.gene020495.t1 | AT5G35525 | 57.419 | 155 | 60 | 2 | 40 | 192 | 2 | 152 | 3.67e-58 | 180 |
MS.gene020495.t1 | AT1G14870 | 66.102 | 118 | 40 | 0 | 46 | 163 | 8 | 125 | 9.74e-55 | 171 |
MS.gene020495.t1 | AT1G14880 | 56.376 | 149 | 59 | 2 | 46 | 192 | 7 | 151 | 1.56e-52 | 165 |
MS.gene020495.t1 | AT1G68610 | 53.846 | 143 | 61 | 3 | 53 | 192 | 18 | 158 | 2.87e-43 | 142 |
MS.gene020495.t1 | AT1G49030 | 47.826 | 138 | 70 | 1 | 53 | 190 | 87 | 222 | 4.59e-41 | 139 |
MS.gene020495.t1 | AT3G18470 | 45.652 | 138 | 65 | 1 | 53 | 190 | 4 | 131 | 4.75e-39 | 130 |
MS.gene020495.t1 | AT3G18460 | 50.000 | 116 | 57 | 1 | 54 | 169 | 54 | 168 | 3.94e-36 | 125 |
MS.gene020495.t1 | AT3G18450 | 39.855 | 138 | 78 | 2 | 53 | 190 | 51 | 183 | 1.67e-33 | 118 |
MS.gene020495.t1 | AT1G58320 | 44.681 | 141 | 69 | 4 | 53 | 192 | 16 | 148 | 6.25e-31 | 110 |
MS.gene020495.t1 | AT1G68630 | 40.288 | 139 | 77 | 2 | 54 | 192 | 29 | 161 | 1.02e-28 | 105 |
MS.gene020495.t1 | AT1G52200 | 36.691 | 139 | 87 | 1 | 54 | 192 | 53 | 190 | 9.64e-27 | 100 |
MS.gene020495.t1 | AT1G52200 | 38.182 | 110 | 68 | 0 | 54 | 163 | 53 | 162 | 3.22e-23 | 91.7 |
MS.gene020495.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.34e-16 | 74.3 |
MS.gene020495.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.34e-16 | 74.3 |
MS.gene020495.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.34e-16 | 74.3 |
MS.gene020495.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.34e-16 | 74.3 |
MS.gene020495.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 53 | 156 | 46 | 164 | 1.34e-16 | 74.3 |
MS.gene020495.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 54 | 156 | 62 | 193 | 5.10e-13 | 65.9 |
MS.gene020495.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 54 | 156 | 16 | 147 | 5.15e-13 | 65.1 |
MS.gene020495.t1 | AT2G40935 | 34.167 | 120 | 51 | 4 | 53 | 156 | 46 | 153 | 5.55e-13 | 64.7 |
MS.gene020495.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.01e-12 | 63.5 |
MS.gene020495.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.01e-12 | 63.5 |
MS.gene020495.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 67 | 156 | 36 | 140 | 1.01e-12 | 63.5 |
MS.gene020495.t1 | AT5G51400 | 27.820 | 133 | 65 | 4 | 54 | 156 | 62 | 193 | 3.49e-11 | 60.8 |
Find 52 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAGGTTGCATAACATTC+TGG | 0.295102 | 4.1:-1943353 | MS.gene020495:intron |
TGGTGTCCATGTATCACTTT+TGG | 0.295539 | 4.1:-1943333 | MS.gene020495:CDS |
ACATTGATTTGTTGTGTGAT+TGG | 0.370159 | 4.1:-1942893 | MS.gene020495:CDS |
GACCATTCAACTAGAGGTTT+AGG | 0.409162 | 4.1:+1943544 | None:intergenic |
TATGCTGGCTTTCCATCCTC+TGG | 0.412339 | 4.1:+1943676 | None:intergenic |
CTCATGCCTTGTTCAACTGT+TGG | 0.414160 | 4.1:+1942473 | None:intergenic |
CGTGGATTTAACATGGTCAT+TGG | 0.419166 | 4.1:-1942728 | MS.gene020495:intron |
AGCTACAACAGCGCTACATC+AGG | 0.421301 | 4.1:-1943616 | MS.gene020495:CDS |
AGAGGTTTAGGAGGAGGAGG+AGG | 0.422476 | 4.1:+1943556 | None:intergenic |
ATTTGTTGTGTGATTGGATG+TGG | 0.426662 | 4.1:-1942887 | MS.gene020495:CDS |
TGTCAATGATTTCTGCAACT+TGG | 0.449101 | 4.1:+1943310 | None:intergenic |
GTAGCGCTGTTGTAGCTAAC+CGG | 0.468131 | 4.1:+1943622 | None:intergenic |
TTGCAGCATGTGGTGCTAGT+GGG | 0.477577 | 4.1:-1942925 | MS.gene020495:intron |
GTTTGTATTCATGCTTCTAC+CGG | 0.481906 | 4.1:-1942862 | MS.gene020495:CDS |
CCGTGTGGTTGATTGTATGC+TGG | 0.486525 | 4.1:+1943661 | None:intergenic |
CTCCTAAACCTCTAGTTGAA+TGG | 0.493379 | 4.1:-1943546 | MS.gene020495:CDS |
GAGACAACAATACGGTTTGA+AGG | 0.511075 | 4.1:-1942831 | MS.gene020495:CDS |
TCAACTAGAGGTTTAGGAGG+AGG | 0.514397 | 4.1:+1943550 | None:intergenic |
TGTGATTGCTGCTCTAACCC+TGG | 0.516136 | 4.1:-1943511 | MS.gene020495:CDS |
ACTAGAGGTTTAGGAGGAGG+AGG | 0.519443 | 4.1:+1943553 | None:intergenic |
CGCGTAATCTGATGAGGCAC+CGG | 0.538603 | 4.1:+1943588 | None:intergenic |
ATTGTTGTCTCATCTTTGAC+CGG | 0.542859 | 4.1:+1942843 | None:intergenic |
TTTGCAGCATGTGGTGCTAG+TGG | 0.554320 | 4.1:-1942926 | MS.gene020495:intron |
CATTCAACTAGAGGTTTAGG+AGG | 0.560404 | 4.1:+1943547 | None:intergenic |
AGACAACAATACGGTTTGAA+GGG | 0.566421 | 4.1:-1942830 | MS.gene020495:CDS |
AAAATGTATCAACCAGAGGA+TGG | 0.567195 | 4.1:-1943688 | MS.gene020495:CDS |
CCTCTAGTTGAATGGTCCAC+CGG | 0.573579 | 4.1:-1943538 | MS.gene020495:CDS |
AGAGCAGCAATCACAAAGAC+CGG | 0.576627 | 4.1:+1943519 | None:intergenic |
TTTGATTCATTGCTGTTGTG+AGG | 0.583759 | 4.1:-1942789 | MS.gene020495:CDS |
ACTTGGCCAAAAGTGATACA+TGG | 0.588100 | 4.1:+1943327 | None:intergenic |
TTGGAATGGATAGGGTGGCA+TGG | 0.589043 | 4.1:-1942548 | MS.gene020495:intron |
TGCAGCATGTGGTGCTAGTG+GGG | 0.597912 | 4.1:-1942924 | MS.gene020495:intron |
ATATTCTTGACACAAGGCGC+AGG | 0.602419 | 4.1:+1942766 | None:intergenic |
AGCGCTACATCAGGGTACTC+CGG | 0.612631 | 4.1:-1943607 | MS.gene020495:CDS |
CCGGTGGACCATTCAACTAG+AGG | 0.613837 | 4.1:+1943538 | None:intergenic |
CTCACGATATTCTTGACACA+AGG | 0.619435 | 4.1:+1942760 | None:intergenic |
AATGTTGAGCAACGAACTAG+AGG | 0.619711 | 4.1:-1942524 | MS.gene020495:CDS |
CAATGACCATGTTAAATCCA+CGG | 0.621201 | 4.1:+1942729 | None:intergenic |
CAACCACACGGAGCTGCCAC+AGG | 0.624289 | 4.1:-1943649 | MS.gene020495:CDS |
AGTTGCAGAAATCATTGACA+AGG | 0.629883 | 4.1:-1943307 | MS.gene020495:CDS |
GCTACAACAGCGCTACATCA+GGG | 0.629923 | 4.1:-1943615 | MS.gene020495:CDS |
TGAGAACCGTGGATTTAACA+TGG | 0.637569 | 4.1:-1942735 | MS.gene020495:CDS |
AGGAGGCGCGTAATCTGATG+AGG | 0.643098 | 4.1:+1943582 | None:intergenic |
TCAAAGATGAGACAACAATA+CGG | 0.651936 | 4.1:-1942839 | MS.gene020495:CDS |
GTAGCTAACCGGAAAACCTG+TGG | 0.661310 | 4.1:+1943633 | None:intergenic |
TATCGTGAGCTTGAGAACCG+TGG | 0.668258 | 4.1:-1942746 | MS.gene020495:CDS |
CCAGCATACAATCAACCACA+CGG | 0.675150 | 4.1:-1943661 | MS.gene020495:CDS |
ACGAACTAGAGGAATAGCAA+TGG | 0.679026 | 4.1:-1942513 | MS.gene020495:CDS |
ACAGCTCCAACAGTTGAACA+AGG | 0.687783 | 4.1:-1942479 | MS.gene020495:CDS |
GCAGCAATCACAAAGACCGG+TGG | 0.694206 | 4.1:+1943522 | None:intergenic |
GTTGCAGAAATCATTGACAA+GGG | 0.697634 | 4.1:-1943306 | MS.gene020495:CDS |
AAACCTGTGGCAGCTCCGTG+TGG | 0.698593 | 4.1:+1943646 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTAGATAATATTATATATA+TGG | + | chr4.1:1943473-1943492 | None:intergenic | 10.0% |
!! | ATAATAATATAGATATTGAA+AGG | - | chr4.1:1942928-1942947 | MS.gene020495:intron | 10.0% |
!! | TAATAATATAGATATTGAAA+GGG | - | chr4.1:1942929-1942948 | MS.gene020495:intron | 10.0% |
!!! | TATGTTTTAAAAAGTAAAAT+TGG | - | chr4.1:1943125-1943144 | MS.gene020495:intron | 10.0% |
!! | AACAAATACTAAAAAACTAA+TGG | + | chr4.1:1943513-1943532 | None:intergenic | 15.0% |
!! | AATACATAATAATACTTTAG+AGG | - | chr4.1:1943014-1943033 | MS.gene020495:intron | 15.0% |
!! | GAAATAAGTTACTAATGTAA+TGG | - | chr4.1:1943147-1943166 | MS.gene020495:intron | 20.0% |
!! | TATAGTTATATGCATAGTAA+AGG | + | chr4.1:1942684-1942703 | None:intergenic | 20.0% |
!!! | TGATTTATTTTGATTGAACT+TGG | - | chr4.1:1943584-1943603 | MS.gene020495:CDS | 20.0% |
! | AATATAGATATTGAAAGGGT+TGG | - | chr4.1:1942933-1942952 | MS.gene020495:intron | 25.0% |
! | ATATAGATATTGAAAGGGTT+GGG | - | chr4.1:1942934-1942953 | MS.gene020495:intron | 25.0% |
! | ATTGTCAAAGTAGTTGTTAT+AGG | - | chr4.1:1942964-1942983 | MS.gene020495:intron | 25.0% |
! | TTATATGCATAGTAAAGGAT+GGG | + | chr4.1:1942679-1942698 | None:intergenic | 25.0% |
!!! | AATTTGTTATGAGAAGTGAA+TGG | + | chr4.1:1942888-1942907 | None:intergenic | 25.0% |
!!! | ATTTGTTATGAGAAGTGAAT+GGG | + | chr4.1:1942887-1942906 | None:intergenic | 25.0% |
!!! | TATTTTGATTGAACTTGGAA+TGG | - | chr4.1:1943589-1943608 | MS.gene020495:CDS | 25.0% |
!!! | TTGCATATCTAATTTGTTTC+AGG | - | chr4.1:1942782-1942801 | MS.gene020495:CDS | 25.0% |
AATTGTTGTGAGTCAACTTA+AGG | - | chr4.1:1943185-1943204 | MS.gene020495:intron | 30.0% | |
GTTATATGCATAGTAAAGGA+TGG | + | chr4.1:1942680-1942699 | None:intergenic | 30.0% | |
TATATGCATAGTAAAGGATG+GGG | + | chr4.1:1942678-1942697 | None:intergenic | 30.0% | |
TCAAAGATGAGACAACAATA+CGG | - | chr4.1:1943312-1943331 | MS.gene020495:CDS | 30.0% | |
TGAACTCTAAATTGATGTGA+TGG | - | chr4.1:1943097-1943116 | MS.gene020495:intron | 30.0% | |
! | AGTCAACTTAAGGATTTTTG+TGG | - | chr4.1:1943195-1943214 | MS.gene020495:intron | 30.0% |
!! | ACATTGATTTGTTGTGTGAT+TGG | - | chr4.1:1943258-1943277 | MS.gene020495:intron | 30.0% |
AGACAACAATACGGTTTGAA+GGG | - | chr4.1:1943321-1943340 | MS.gene020495:CDS | 35.0% | |
AGTTGCAGAAATCATTGACA+AGG | - | chr4.1:1942844-1942863 | MS.gene020495:CDS | 35.0% | |
ATATGCATAGTAAAGGATGG+GGG | + | chr4.1:1942677-1942696 | None:intergenic | 35.0% | |
ATTGTTGTCTCATCTTTGAC+CGG | + | chr4.1:1943311-1943330 | None:intergenic | 35.0% | |
CAATGACCATGTTAAATCCA+CGG | + | chr4.1:1943425-1943444 | None:intergenic | 35.0% | |
GATTGAACTTGGAATGGATA+GGG | - | chr4.1:1943595-1943614 | MS.gene020495:CDS | 35.0% | |
GTTGCAGAAATCATTGACAA+GGG | - | chr4.1:1942845-1942864 | MS.gene020495:CDS | 35.0% | |
GTTTGTATTCATGCTTCTAC+CGG | - | chr4.1:1943289-1943308 | MS.gene020495:intron | 35.0% | |
TGATTGAACTTGGAATGGAT+AGG | - | chr4.1:1943594-1943613 | MS.gene020495:CDS | 35.0% | |
TGTCAATGATTTCTGCAACT+TGG | + | chr4.1:1942844-1942863 | None:intergenic | 35.0% | |
! | TTTGATTCATTGCTGTTGTG+AGG | - | chr4.1:1943362-1943381 | MS.gene020495:intron | 35.0% |
!! | ATTTGTTGTGTGATTGGATG+TGG | - | chr4.1:1943264-1943283 | MS.gene020495:intron | 35.0% |
!! | TTTCAGGTTGCATAACATTC+TGG | - | chr4.1:1942798-1942817 | MS.gene020495:CDS | 35.0% |
AATGTTGAGCAACGAACTAG+AGG | - | chr4.1:1943627-1943646 | MS.gene020495:CDS | 40.0% | |
ACGAACTAGAGGAATAGCAA+TGG | - | chr4.1:1943638-1943657 | MS.gene020495:CDS | 40.0% | |
ACTTGGCCAAAAGTGATACA+TGG | + | chr4.1:1942827-1942846 | None:intergenic | 40.0% | |
CATTCAACTAGAGGTTTAGG+AGG | + | chr4.1:1942607-1942626 | None:intergenic | 40.0% | |
CGTGGATTTAACATGGTCAT+TGG | - | chr4.1:1943423-1943442 | MS.gene020495:intron | 40.0% | |
CTCACGATATTCTTGACACA+AGG | + | chr4.1:1943394-1943413 | None:intergenic | 40.0% | |
CTCCTAAACCTCTAGTTGAA+TGG | - | chr4.1:1942605-1942624 | MS.gene020495:intron | 40.0% | |
GACCATTCAACTAGAGGTTT+AGG | + | chr4.1:1942610-1942629 | None:intergenic | 40.0% | |
GAGACAACAATACGGTTTGA+AGG | - | chr4.1:1943320-1943339 | MS.gene020495:CDS | 40.0% | |
TGAGAACCGTGGATTTAACA+TGG | - | chr4.1:1943416-1943435 | MS.gene020495:intron | 40.0% | |
! | TGGTGTCCATGTATCACTTT+TGG | - | chr4.1:1942818-1942837 | MS.gene020495:CDS | 40.0% |
ACAGCTCCAACAGTTGAACA+AGG | - | chr4.1:1943672-1943691 | MS.gene020495:CDS | 45.0% | |
AGAGCAGCAATCACAAAGAC+CGG | + | chr4.1:1942635-1942654 | None:intergenic | 45.0% | |
ATATTCTTGACACAAGGCGC+AGG | + | chr4.1:1943388-1943407 | None:intergenic | 45.0% | |
CCAGCATACAATCAACCACA+CGG | - | chr4.1:1942490-1942509 | MS.gene020495:CDS | 45.0% | |
GTGAATGGGTGTCTTACAAG+TGG | + | chr4.1:1942873-1942892 | None:intergenic | 45.0% | |
TCAACTAGAGGTTTAGGAGG+AGG | + | chr4.1:1942604-1942623 | None:intergenic | 45.0% | |
TGAACTTGGAATGGATAGGG+TGG | - | chr4.1:1943598-1943617 | MS.gene020495:CDS | 45.0% | |
! | CTCATGCCTTGTTCAACTGT+TGG | + | chr4.1:1943681-1943700 | None:intergenic | 45.0% |
! | GGTTTTGCATTTGCAGCATG+TGG | - | chr4.1:1943216-1943235 | MS.gene020495:intron | 45.0% |
!! | ATGGGGGACAAACTTTTTCC+AGG | + | chr4.1:1942661-1942680 | None:intergenic | 45.0% |
!! | TGGGGGACAAACTTTTTCCA+GGG | + | chr4.1:1942660-1942679 | None:intergenic | 45.0% |
!! | TTATTATGTATTATTAAATT+TGG | + | chr4.1:1943006-1943025 | None:intergenic | 5.0% |
ACTAGAGGTTTAGGAGGAGG+AGG | + | chr4.1:1942601-1942620 | None:intergenic | 50.0% | |
AGCTACAACAGCGCTACATC+AGG | - | chr4.1:1942535-1942554 | MS.gene020495:CDS | 50.0% | |
CCGTGTGGTTGATTGTATGC+TGG | + | chr4.1:1942493-1942512 | None:intergenic | 50.0% | |
CCTCTAGTTGAATGGTCCAC+CGG | - | chr4.1:1942613-1942632 | MS.gene020495:intron | 50.0% | |
GCTACAACAGCGCTACATCA+GGG | - | chr4.1:1942536-1942555 | MS.gene020495:CDS | 50.0% | |
GTAGCGCTGTTGTAGCTAAC+CGG | + | chr4.1:1942532-1942551 | None:intergenic | 50.0% | |
GTAGCTAACCGGAAAACCTG+TGG | + | chr4.1:1942521-1942540 | None:intergenic | 50.0% | |
TATCGTGAGCTTGAGAACCG+TGG | - | chr4.1:1943405-1943424 | MS.gene020495:intron | 50.0% | |
TGTGATTGCTGCTCTAACCC+TGG | - | chr4.1:1942640-1942659 | MS.gene020495:intron | 50.0% | |
TTGGAATGGATAGGGTGGCA+TGG | - | chr4.1:1943603-1943622 | MS.gene020495:CDS | 50.0% | |
! | TTGCAGCATGTGGTGCTAGT+GGG | - | chr4.1:1943226-1943245 | MS.gene020495:intron | 50.0% |
! | TTTGCAGCATGTGGTGCTAG+TGG | - | chr4.1:1943225-1943244 | MS.gene020495:intron | 50.0% |
!! | TATGCTGGCTTTCCATCCTC+TGG | + | chr4.1:1942478-1942497 | None:intergenic | 50.0% |
AGAGGTTTAGGAGGAGGAGG+AGG | + | chr4.1:1942598-1942617 | None:intergenic | 55.0% | |
CCGGTGGACCATTCAACTAG+AGG | + | chr4.1:1942616-1942635 | None:intergenic | 55.0% | |
CGCGTAATCTGATGAGGCAC+CGG | + | chr4.1:1942566-1942585 | None:intergenic | 55.0% | |
GCAGCAATCACAAAGACCGG+TGG | + | chr4.1:1942632-1942651 | None:intergenic | 55.0% | |
! | AGCGCTACATCAGGGTACTC+CGG | - | chr4.1:1942544-1942563 | MS.gene020495:intron | 55.0% |
! | AGGAGGCGCGTAATCTGATG+AGG | + | chr4.1:1942572-1942591 | None:intergenic | 55.0% |
! | TGCAGCATGTGGTGCTAGTG+GGG | - | chr4.1:1943227-1943246 | MS.gene020495:intron | 55.0% |
AAACCTGTGGCAGCTCCGTG+TGG | + | chr4.1:1942508-1942527 | None:intergenic | 60.0% | |
GGTTTAGGAGGAGGAGGAGG+AGG | + | chr4.1:1942595-1942614 | None:intergenic | 60.0% | |
TTAGGAGGAGGAGGAGGAGG+AGG | + | chr4.1:1942592-1942611 | None:intergenic | 60.0% | |
! | CGGAGCTGCCACAGGTTTTC+CGG | - | chr4.1:1942510-1942529 | MS.gene020495:CDS | 60.0% |
CAACCACACGGAGCTGCCAC+AGG | - | chr4.1:1942502-1942521 | MS.gene020495:CDS | 65.0% | |
GGAGGAGGAGGAGGAGGAGG+AGG | + | chr4.1:1942586-1942605 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 1942466 | 1943707 | 1942466 | ID=MS.gene020495 |
chr4.1 | mRNA | 1942466 | 1943707 | 1942466 | ID=MS.gene020495.t1;Parent=MS.gene020495 |
chr4.1 | exon | 1943506 | 1943707 | 1943506 | ID=MS.gene020495.t1.exon1;Parent=MS.gene020495.t1 |
chr4.1 | CDS | 1943506 | 1943707 | 1943506 | ID=cds.MS.gene020495.t1;Parent=MS.gene020495.t1 |
chr4.1 | exon | 1943298 | 1943369 | 1943298 | ID=MS.gene020495.t1.exon2;Parent=MS.gene020495.t1 |
chr4.1 | CDS | 1943298 | 1943369 | 1943298 | ID=cds.MS.gene020495.t1;Parent=MS.gene020495.t1 |
chr4.1 | exon | 1942729 | 1942941 | 1942729 | ID=MS.gene020495.t1.exon3;Parent=MS.gene020495.t1 |
chr4.1 | CDS | 1942729 | 1942941 | 1942729 | ID=cds.MS.gene020495.t1;Parent=MS.gene020495.t1 |
chr4.1 | exon | 1942466 | 1942557 | 1942466 | ID=MS.gene020495.t1.exon4;Parent=MS.gene020495.t1 |
chr4.1 | CDS | 1942466 | 1942557 | 1942466 | ID=cds.MS.gene020495.t1;Parent=MS.gene020495.t1 |
Gene Sequence |
Protein sequence |