Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015684.t1 | XP_003630909.1 | 94.2 | 191 | 10 | 1 | 1 | 190 | 1 | 191 | 1.90E-97 | 365.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015684.t1 | Q9LQU4 | 64.1 | 142 | 45 | 2 | 51 | 190 | 15 | 152 | 5.1e-51 | 202.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015684.t1 | G7LAH7 | 94.2 | 191 | 10 | 1 | 1 | 190 | 1 | 191 | 1.4e-97 | 365.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene29965 | MS.gene015684 | PPI |
MS.gene020496 | MS.gene015684 | PPI |
MS.gene041113 | MS.gene015684 | PPI |
MS.gene29964 | MS.gene015684 | PPI |
MS.gene047654 | MS.gene015684 | PPI |
MS.gene010381 | MS.gene015684 | PPI |
MS.gene015683 | MS.gene015684 | PPI |
MS.gene020495 | MS.gene015684 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015684.t1 | MTR_8g104870 | 96.335 | 191 | 6 | 1 | 1 | 190 | 1 | 191 | 6.23e-135 | 375 |
MS.gene015684.t1 | MTR_5g017650 | 91.053 | 190 | 13 | 2 | 4 | 190 | 5 | 193 | 4.25e-110 | 312 |
MS.gene015684.t1 | MTR_8g104890 | 62.778 | 180 | 45 | 4 | 11 | 190 | 12 | 169 | 7.00e-62 | 189 |
MS.gene015684.t1 | MTR_4g086330 | 52.593 | 135 | 64 | 0 | 51 | 185 | 63 | 197 | 2.99e-50 | 161 |
MS.gene015684.t1 | MTR_4g086320 | 55.856 | 111 | 49 | 0 | 51 | 161 | 50 | 160 | 1.28e-41 | 138 |
MS.gene015684.t1 | MTR_8g104830 | 47.518 | 141 | 69 | 3 | 52 | 190 | 9 | 146 | 9.84e-40 | 132 |
MS.gene015684.t1 | MTR_6g084940 | 40.881 | 159 | 83 | 3 | 32 | 190 | 2 | 149 | 3.54e-31 | 110 |
MS.gene015684.t1 | MTR_1g075550 | 53.333 | 120 | 51 | 2 | 45 | 164 | 9 | 123 | 2.44e-28 | 103 |
MS.gene015684.t1 | MTR_2g101660 | 36.691 | 139 | 88 | 0 | 52 | 190 | 33 | 171 | 7.35e-28 | 103 |
MS.gene015684.t1 | MTR_2g101660 | 34.959 | 123 | 80 | 0 | 68 | 190 | 1 | 123 | 5.48e-22 | 86.7 |
MS.gene015684.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 51 | 190 | 40 | 186 | 3.18e-17 | 75.9 |
MS.gene015684.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 51 | 190 | 82 | 228 | 4.23e-17 | 76.6 |
MS.gene015684.t1 | MTR_5g008240 | 32.903 | 155 | 81 | 5 | 51 | 190 | 106 | 252 | 7.65e-17 | 76.3 |
MS.gene015684.t1 | MTR_5g022670 | 34.579 | 107 | 69 | 1 | 51 | 157 | 294 | 399 | 8.31e-13 | 66.2 |
MS.gene015684.t1 | MTR_5g008240 | 32.624 | 141 | 72 | 5 | 65 | 190 | 36 | 168 | 1.90e-12 | 62.8 |
MS.gene015684.t1 | MTR_8g075150 | 35.238 | 105 | 67 | 1 | 51 | 155 | 301 | 404 | 6.62e-12 | 63.5 |
MS.gene015684.t1 | MTR_7g044840 | 25.517 | 145 | 73 | 4 | 39 | 154 | 52 | 190 | 1.08e-11 | 62.0 |
MS.gene015684.t1 | MTR_0172s0050 | 30.872 | 149 | 64 | 7 | 39 | 154 | 55 | 197 | 1.79e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015684.t1 | AT1G14870 | 61.745 | 149 | 51 | 2 | 44 | 190 | 8 | 152 | 2.59e-62 | 190 |
MS.gene015684.t1 | AT5G35525 | 59.864 | 147 | 53 | 2 | 46 | 190 | 10 | 152 | 5.76e-58 | 179 |
MS.gene015684.t1 | AT1G14870 | 66.102 | 118 | 40 | 0 | 44 | 161 | 8 | 125 | 1.06e-54 | 171 |
MS.gene015684.t1 | AT1G14880 | 55.556 | 153 | 62 | 2 | 40 | 190 | 3 | 151 | 6.13e-53 | 166 |
MS.gene015684.t1 | AT1G68610 | 53.846 | 143 | 61 | 3 | 51 | 190 | 18 | 158 | 2.07e-43 | 142 |
MS.gene015684.t1 | AT1G49030 | 47.826 | 138 | 70 | 1 | 51 | 188 | 87 | 222 | 3.17e-41 | 139 |
MS.gene015684.t1 | AT3G18470 | 45.652 | 138 | 65 | 1 | 51 | 188 | 4 | 131 | 2.82e-39 | 131 |
MS.gene015684.t1 | AT3G18460 | 50.000 | 116 | 57 | 1 | 52 | 167 | 54 | 168 | 2.10e-36 | 125 |
MS.gene015684.t1 | AT3G18450 | 36.264 | 182 | 86 | 5 | 7 | 188 | 32 | 183 | 8.64e-34 | 119 |
MS.gene015684.t1 | AT1G58320 | 44.681 | 141 | 69 | 4 | 51 | 190 | 16 | 148 | 3.46e-31 | 111 |
MS.gene015684.t1 | AT1G68630 | 40.288 | 139 | 77 | 2 | 52 | 190 | 29 | 161 | 5.24e-29 | 105 |
MS.gene015684.t1 | AT1G52200 | 36.691 | 139 | 87 | 1 | 52 | 190 | 53 | 190 | 6.66e-27 | 101 |
MS.gene015684.t1 | AT1G52200 | 38.182 | 110 | 68 | 0 | 52 | 161 | 53 | 162 | 2.68e-23 | 92.0 |
MS.gene015684.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 51 | 154 | 46 | 164 | 1.36e-16 | 74.3 |
MS.gene015684.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 51 | 154 | 46 | 164 | 1.36e-16 | 74.3 |
MS.gene015684.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 51 | 154 | 46 | 164 | 1.36e-16 | 74.3 |
MS.gene015684.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 51 | 154 | 46 | 164 | 1.36e-16 | 74.3 |
MS.gene015684.t1 | AT2G40935 | 35.833 | 120 | 60 | 3 | 51 | 154 | 46 | 164 | 1.36e-16 | 74.3 |
MS.gene015684.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 52 | 154 | 62 | 193 | 4.28e-13 | 65.9 |
MS.gene015684.t1 | AT2G45010 | 29.323 | 133 | 63 | 4 | 52 | 154 | 16 | 147 | 4.36e-13 | 65.1 |
MS.gene015684.t1 | AT2G40935 | 34.167 | 120 | 51 | 4 | 51 | 154 | 46 | 153 | 5.32e-13 | 64.7 |
MS.gene015684.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 65 | 154 | 36 | 140 | 9.92e-13 | 63.5 |
MS.gene015684.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 65 | 154 | 36 | 140 | 9.92e-13 | 63.5 |
MS.gene015684.t1 | AT2G40935 | 36.792 | 106 | 50 | 3 | 65 | 154 | 36 | 140 | 9.92e-13 | 63.5 |
MS.gene015684.t1 | AT5G51400 | 27.820 | 133 | 65 | 4 | 52 | 154 | 62 | 193 | 3.49e-11 | 60.5 |
MS.gene015684.t1 | AT4G35920 | 31.250 | 128 | 87 | 1 | 28 | 155 | 276 | 402 | 6.80e-11 | 60.8 |
MS.gene015684.t1 | AT4G35920 | 31.250 | 128 | 87 | 1 | 28 | 155 | 276 | 402 | 6.80e-11 | 60.8 |
MS.gene015684.t1 | AT4G35920 | 31.250 | 128 | 87 | 1 | 28 | 155 | 276 | 402 | 6.80e-11 | 60.8 |
MS.gene015684.t1 | AT4G35920 | 31.250 | 128 | 87 | 1 | 28 | 155 | 276 | 402 | 6.80e-11 | 60.8 |
MS.gene015684.t1 | AT4G35920 | 31.250 | 128 | 87 | 1 | 28 | 155 | 276 | 402 | 6.80e-11 | 60.8 |
Find 53 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAGGTTGCATAACATTC+TGG | 0.295102 | 4.2:-1646493 | MS.gene015684:intron |
TGGTGTCCATGTATCACTTT+TGG | 0.295539 | 4.2:-1646473 | MS.gene015684:CDS |
ACATTGATTTGTTGTGTGAT+TGG | 0.370159 | 4.2:-1646027 | MS.gene015684:CDS |
GACCATTCAACTAGAGGTTT+AGG | 0.409162 | 4.2:+1646633 | None:intergenic |
TATGCTGGCTTTCCATCCTC+TGG | 0.412339 | 4.2:+1646759 | None:intergenic |
CTCATGCCTTGTTCAACTGT+TGG | 0.414160 | 4.2:+1645610 | None:intergenic |
CGTGGATTTAACATGGTCAT+TGG | 0.419166 | 4.2:-1645862 | MS.gene015684:intron |
AGCTACAACAGCGCTACATC+GGG | 0.420241 | 4.2:-1646699 | MS.gene015684:CDS |
AGAGGTTTAGGAGGAGGAGG+AGG | 0.422476 | 4.2:+1646645 | None:intergenic |
CCTTGTGGTTGATTGTATGC+TGG | 0.422766 | 4.2:+1646744 | None:intergenic |
ATTTGTTGTGTGATTGGATG+TGG | 0.426662 | 4.2:-1646021 | MS.gene015684:CDS |
TGTCAATGATTTCTGCAACT+TGG | 0.449101 | 4.2:+1646450 | None:intergenic |
TTGCAGCATGTGGTGCTAGT+GGG | 0.477577 | 4.2:-1646059 | MS.gene015684:intron |
GTAGCGCTGTTGTAGCTAAC+CGG | 0.481461 | 4.2:+1646705 | None:intergenic |
GTTTGTATTCATGCTTCTAC+CGG | 0.481906 | 4.2:-1645996 | MS.gene015684:CDS |
CTCCTAAACCTCTAGTTGAA+TGG | 0.493379 | 4.2:-1646635 | MS.gene015684:CDS |
GAGACAACAATACGGTTTGA+AGG | 0.511075 | 4.2:-1645965 | MS.gene015684:CDS |
TCAACTAGAGGTTTAGGAGG+AGG | 0.514397 | 4.2:+1646639 | None:intergenic |
TGTGATTGCTGCTCTAACCC+TGG | 0.516136 | 4.2:-1646600 | MS.gene015684:CDS |
ACTAGAGGTTTAGGAGGAGG+AGG | 0.519443 | 4.2:+1646642 | None:intergenic |
CGCGTAATCTGATGAGGCAC+CGG | 0.538603 | 4.2:+1646671 | None:intergenic |
ATTGTTGTCTCATCTTTGAC+CGG | 0.542859 | 4.2:+1645977 | None:intergenic |
AGCGCTACATCGGGGTACTC+CGG | 0.545618 | 4.2:-1646690 | MS.gene015684:CDS |
TAGCTACAACAGCGCTACAT+CGG | 0.552765 | 4.2:-1646700 | MS.gene015684:CDS |
TTTGCAGCATGTGGTGCTAG+TGG | 0.554320 | 4.2:-1646060 | MS.gene015684:intron |
CATTCAACTAGAGGTTTAGG+AGG | 0.560404 | 4.2:+1646636 | None:intergenic |
AGACAACAATACGGTTTGAA+GGG | 0.566421 | 4.2:-1645964 | MS.gene015684:CDS |
AAAATGTATCAACCAGAGGA+TGG | 0.567195 | 4.2:-1646771 | MS.gene015684:CDS |
CCTCTAGTTGAATGGTCCAC+CGG | 0.573579 | 4.2:-1646627 | MS.gene015684:CDS |
AGAGCAGCAATCACAAAGAC+CGG | 0.576627 | 4.2:+1646608 | None:intergenic |
TTTGATTCATTGCTGTTGTG+AGG | 0.583759 | 4.2:-1645923 | MS.gene015684:CDS |
ACTTGGCCAAAAGTGATACA+TGG | 0.588100 | 4.2:+1646467 | None:intergenic |
TTGGAATGGATAGGGTGGCA+TGG | 0.589043 | 4.2:-1645685 | MS.gene015684:intron |
AAACCTGTGGCAGCTCCTTG+TGG | 0.594259 | 4.2:+1646729 | None:intergenic |
TGCAGCATGTGGTGCTAGTG+GGG | 0.597912 | 4.2:-1646058 | MS.gene015684:intron |
CAACCACAAGGAGCTGCCAC+AGG | 0.600467 | 4.2:-1646732 | MS.gene015684:CDS |
ATATTCTTGACACAAGGCGC+AGG | 0.602419 | 4.2:+1645900 | None:intergenic |
CCGGTGGACCATTCAACTAG+AGG | 0.613837 | 4.2:+1646627 | None:intergenic |
CTCACGATATTCTTGACACA+AGG | 0.619435 | 4.2:+1645894 | None:intergenic |
AATGTTGAGCAACGAACTAG+AGG | 0.619711 | 4.2:-1645661 | MS.gene015684:CDS |
CAATGACCATGTTAAATCCA+CGG | 0.621201 | 4.2:+1645863 | None:intergenic |
AGTTGCAGAAATCATTGACA+AGG | 0.629883 | 4.2:-1646447 | MS.gene015684:CDS |
TGAGAACCGTGGATTTAACA+TGG | 0.637569 | 4.2:-1645869 | MS.gene015684:CDS |
AGGAGGCGCGTAATCTGATG+AGG | 0.643098 | 4.2:+1646665 | None:intergenic |
TCAAAGATGAGACAACAATA+CGG | 0.651936 | 4.2:-1645973 | MS.gene015684:CDS |
CCAGCATACAATCAACCACA+AGG | 0.659702 | 4.2:-1646744 | MS.gene015684:CDS |
GTAGCTAACCGGAAAACCTG+TGG | 0.661310 | 4.2:+1646716 | None:intergenic |
TATCGTGAGCTTGAGAACCG+TGG | 0.668258 | 4.2:-1645880 | MS.gene015684:CDS |
ACGAACTAGAGGAATAGCAA+TGG | 0.679026 | 4.2:-1645650 | MS.gene015684:CDS |
ACAGCTCCAACAGTTGAACA+AGG | 0.687783 | 4.2:-1645616 | MS.gene015684:CDS |
GCAGCAATCACAAAGACCGG+TGG | 0.694206 | 4.2:+1646611 | None:intergenic |
GTTGCAGAAATCATTGACAA+GGG | 0.697634 | 4.2:-1646446 | MS.gene015684:CDS |
GCTACAACAGCGCTACATCG+GGG | 0.725051 | 4.2:-1646698 | MS.gene015684:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATATAGATATTGAA+AGG | - | chr4.2:1646014-1646033 | MS.gene015684:CDS | 10.0% |
!! | TAATAATATAGATATTGAAA+GGG | - | chr4.2:1646015-1646034 | MS.gene015684:CDS | 10.0% |
!!! | TATGTTTTAAAAAGTAAAAT+TGG | - | chr4.2:1646211-1646230 | MS.gene015684:intron | 10.0% |
!! | AACAAATACTAAAAAACTAA+TGG | + | chr4.2:1646596-1646615 | None:intergenic | 15.0% |
!! | AATACATAATAATACTTTAG+AGG | - | chr4.2:1646100-1646119 | MS.gene015684:intron | 15.0% |
!! | GAAATAAGTTACTAATGTAA+TGG | - | chr4.2:1646233-1646252 | MS.gene015684:intron | 20.0% |
!! | TATAGTTATATGCATAGTAA+AGG | + | chr4.2:1645815-1645834 | None:intergenic | 20.0% |
!!! | TGATTTATTTTGATTGAACT+TGG | - | chr4.2:1646667-1646686 | MS.gene015684:CDS | 20.0% |
! | AATATAGATATTGAAAGGGT+TGG | - | chr4.2:1646019-1646038 | MS.gene015684:CDS | 25.0% |
! | ATATAGATATTGAAAGGGTT+GGG | - | chr4.2:1646020-1646039 | MS.gene015684:CDS | 25.0% |
! | ATTGTCAAAGAAGTAGTTAT+AGG | - | chr4.2:1646050-1646069 | MS.gene015684:CDS | 25.0% |
! | TTATATGCATAGTAAAGGAT+GGG | + | chr4.2:1645810-1645829 | None:intergenic | 25.0% |
!!! | AATTTGTTATGAGAAGTGAA+TGG | + | chr4.2:1645968-1645987 | None:intergenic | 25.0% |
!!! | ATTTGTTATGAGAAGTGAAT+GGG | + | chr4.2:1645967-1645986 | None:intergenic | 25.0% |
!!! | TATTTTGATTGAACTTGGAA+TGG | - | chr4.2:1646672-1646691 | MS.gene015684:CDS | 25.0% |
!!! | TTGCATATCTAATTTGTTTC+AGG | - | chr4.2:1645862-1645881 | MS.gene015684:intron | 25.0% |
AATTGTTGTGAGTCAACTTA+AGG | - | chr4.2:1646271-1646290 | MS.gene015684:intron | 30.0% | |
GTTATATGCATAGTAAAGGA+TGG | + | chr4.2:1645811-1645830 | None:intergenic | 30.0% | |
TATATGCATAGTAAAGGATG+GGG | + | chr4.2:1645809-1645828 | None:intergenic | 30.0% | |
TCAAAGATGAGACAACAATA+CGG | - | chr4.2:1646398-1646417 | MS.gene015684:intron | 30.0% | |
TGAACTCTAAATTGATGTGA+TGG | - | chr4.2:1646183-1646202 | MS.gene015684:intron | 30.0% | |
! | AGTCAACTTAAGGATTTTTG+TGG | - | chr4.2:1646281-1646300 | MS.gene015684:intron | 30.0% |
!! | ACATTGATTTGTTGTGTGAT+TGG | - | chr4.2:1646344-1646363 | MS.gene015684:intron | 30.0% |
AGACAACAATACGGTTTGAA+GGG | - | chr4.2:1646407-1646426 | MS.gene015684:intron | 35.0% | |
AGTTGCAGAAATCATTGACA+AGG | - | chr4.2:1645924-1645943 | MS.gene015684:CDS | 35.0% | |
ATATGCATAGTAAAGGATGG+GGG | + | chr4.2:1645808-1645827 | None:intergenic | 35.0% | |
ATTGTTGTCTCATCTTTGAC+CGG | + | chr4.2:1646397-1646416 | None:intergenic | 35.0% | |
CAATGACCATGTTAAATCCA+CGG | + | chr4.2:1646511-1646530 | None:intergenic | 35.0% | |
GATTGAACTTGGAATGGATA+GGG | - | chr4.2:1646678-1646697 | MS.gene015684:CDS | 35.0% | |
GTTGCAGAAATCATTGACAA+GGG | - | chr4.2:1645925-1645944 | MS.gene015684:CDS | 35.0% | |
GTTTGTATTCATGCTTCTAC+CGG | - | chr4.2:1646375-1646394 | MS.gene015684:intron | 35.0% | |
TGATTGAACTTGGAATGGAT+AGG | - | chr4.2:1646677-1646696 | MS.gene015684:CDS | 35.0% | |
TGTCAATGATTTCTGCAACT+TGG | + | chr4.2:1645924-1645943 | None:intergenic | 35.0% | |
! | TTTGATTCATTGCTGTTGTG+AGG | - | chr4.2:1646448-1646467 | MS.gene015684:CDS | 35.0% |
!! | ATTTGTTGTGTGATTGGATG+TGG | - | chr4.2:1646350-1646369 | MS.gene015684:intron | 35.0% |
!! | TTTCAGGTTGCATAACATTC+TGG | - | chr4.2:1645878-1645897 | MS.gene015684:CDS | 35.0% |
AATGTTGAGCAACGAACTAG+AGG | - | chr4.2:1646710-1646729 | MS.gene015684:CDS | 40.0% | |
ACGAACTAGAGGAATAGCAA+TGG | - | chr4.2:1646721-1646740 | MS.gene015684:CDS | 40.0% | |
ACTTGGCCAAAAGTGATACA+TGG | + | chr4.2:1645907-1645926 | None:intergenic | 40.0% | |
CATTCAACTAGAGGTTTAGG+AGG | + | chr4.2:1645738-1645757 | None:intergenic | 40.0% | |
CGTGGATTTAACATGGTCAT+TGG | - | chr4.2:1646509-1646528 | MS.gene015684:intron | 40.0% | |
CTCACGATATTCTTGACACA+AGG | + | chr4.2:1646480-1646499 | None:intergenic | 40.0% | |
CTCCTAAACCTCTAGTTGAA+TGG | - | chr4.2:1645736-1645755 | MS.gene015684:intron | 40.0% | |
GACCATTCAACTAGAGGTTT+AGG | + | chr4.2:1645741-1645760 | None:intergenic | 40.0% | |
GAGACAACAATACGGTTTGA+AGG | - | chr4.2:1646406-1646425 | MS.gene015684:intron | 40.0% | |
TGAGAACCGTGGATTTAACA+TGG | - | chr4.2:1646502-1646521 | MS.gene015684:intron | 40.0% | |
! | TGGTGTCCATGTATCACTTT+TGG | - | chr4.2:1645898-1645917 | MS.gene015684:CDS | 40.0% |
ACAGCTCCAACAGTTGAACA+AGG | - | chr4.2:1646755-1646774 | MS.gene015684:CDS | 45.0% | |
AGAGCAGCAATCACAAAGAC+CGG | + | chr4.2:1645766-1645785 | None:intergenic | 45.0% | |
ATATTCTTGACACAAGGCGC+AGG | + | chr4.2:1646474-1646493 | None:intergenic | 45.0% | |
CCAGCATACAATCAACCACA+AGG | - | chr4.2:1645627-1645646 | MS.gene015684:CDS | 45.0% | |
CCTTGTGGTTGATTGTATGC+TGG | + | chr4.2:1645630-1645649 | None:intergenic | 45.0% | |
GTGAATGGGTGTCTTACAAG+TGG | + | chr4.2:1645953-1645972 | None:intergenic | 45.0% | |
TAGCTACAACAGCGCTACAT+CGG | - | chr4.2:1645671-1645690 | MS.gene015684:CDS | 45.0% | |
TCAACTAGAGGTTTAGGAGG+AGG | + | chr4.2:1645735-1645754 | None:intergenic | 45.0% | |
TGAACTTGGAATGGATAGGG+TGG | - | chr4.2:1646681-1646700 | MS.gene015684:CDS | 45.0% | |
! | CTCATGCCTTGTTCAACTGT+TGG | + | chr4.2:1646764-1646783 | None:intergenic | 45.0% |
! | GGTTTTGCATTTGCAGCATG+TGG | - | chr4.2:1646302-1646321 | MS.gene015684:intron | 45.0% |
!!! | ATGGGGGACATACTTTTTCC+AGG | + | chr4.2:1645792-1645811 | None:intergenic | 45.0% |
!!! | TGGGGGACATACTTTTTCCA+GGG | + | chr4.2:1645791-1645810 | None:intergenic | 45.0% |
!! | TATAGATAATATTATATATA+TGG | + | chr4.2:1646559-1646578 | None:intergenic | 5.0% |
!! | TTATTATGTATTATTAAATT+TGG | + | chr4.2:1646092-1646111 | None:intergenic | 5.0% |
ACTAGAGGTTTAGGAGGAGG+AGG | + | chr4.2:1645732-1645751 | None:intergenic | 50.0% | |
AGCTACAACAGCGCTACATC+GGG | - | chr4.2:1645672-1645691 | MS.gene015684:CDS | 50.0% | |
CCTCTAGTTGAATGGTCCAC+CGG | - | chr4.2:1645744-1645763 | MS.gene015684:intron | 50.0% | |
GTAGCGCTGTTGTAGCTAAC+CGG | + | chr4.2:1645669-1645688 | None:intergenic | 50.0% | |
GTAGCTAACCGGAAAACCTG+TGG | + | chr4.2:1645658-1645677 | None:intergenic | 50.0% | |
TATCGTGAGCTTGAGAACCG+TGG | - | chr4.2:1646491-1646510 | MS.gene015684:intron | 50.0% | |
TGTGATTGCTGCTCTAACCC+TGG | - | chr4.2:1645771-1645790 | MS.gene015684:intron | 50.0% | |
TTGGAATGGATAGGGTGGCA+TGG | - | chr4.2:1646686-1646705 | MS.gene015684:CDS | 50.0% | |
! | TTGCAGCATGTGGTGCTAGT+GGG | - | chr4.2:1646312-1646331 | MS.gene015684:intron | 50.0% |
! | TTTGCAGCATGTGGTGCTAG+TGG | - | chr4.2:1646311-1646330 | MS.gene015684:intron | 50.0% |
!! | TATGCTGGCTTTCCATCCTC+TGG | + | chr4.2:1645615-1645634 | None:intergenic | 50.0% |
AAACCTGTGGCAGCTCCTTG+TGG | + | chr4.2:1645645-1645664 | None:intergenic | 55.0% | |
AGAGGTTTAGGAGGAGGAGG+AGG | + | chr4.2:1645729-1645748 | None:intergenic | 55.0% | |
CCGGTGGACCATTCAACTAG+AGG | + | chr4.2:1645747-1645766 | None:intergenic | 55.0% | |
CGCGTAATCTGATGAGGCAC+CGG | + | chr4.2:1645703-1645722 | None:intergenic | 55.0% | |
GCAGCAATCACAAAGACCGG+TGG | + | chr4.2:1645763-1645782 | None:intergenic | 55.0% | |
GCTACAACAGCGCTACATCG+GGG | - | chr4.2:1645673-1645692 | MS.gene015684:CDS | 55.0% | |
! | AGGAGCTGCCACAGGTTTTC+CGG | - | chr4.2:1645647-1645666 | MS.gene015684:CDS | 55.0% |
! | AGGAGGCGCGTAATCTGATG+AGG | + | chr4.2:1645709-1645728 | None:intergenic | 55.0% |
! | TGCAGCATGTGGTGCTAGTG+GGG | - | chr4.2:1646313-1646332 | MS.gene015684:intron | 55.0% |
CAACCACAAGGAGCTGCCAC+AGG | - | chr4.2:1645639-1645658 | MS.gene015684:CDS | 60.0% | |
GGTTTAGGAGGAGGAGGAGG+AGG | + | chr4.2:1645726-1645745 | None:intergenic | 60.0% | |
! | AGCGCTACATCGGGGTACTC+CGG | - | chr4.2:1645681-1645700 | MS.gene015684:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 1645603 | 1646790 | 1645603 | ID=MS.gene015684 |
chr4.2 | mRNA | 1645603 | 1646790 | 1645603 | ID=MS.gene015684.t1;Parent=MS.gene015684 |
chr4.2 | exon | 1646595 | 1646790 | 1646595 | ID=MS.gene015684.t1.exon1;Parent=MS.gene015684.t1 |
chr4.2 | CDS | 1646595 | 1646790 | 1646595 | ID=cds.MS.gene015684.t1;Parent=MS.gene015684.t1 |
chr4.2 | exon | 1646438 | 1646509 | 1646438 | ID=MS.gene015684.t1.exon2;Parent=MS.gene015684.t1 |
chr4.2 | CDS | 1646438 | 1646509 | 1646438 | ID=cds.MS.gene015684.t1;Parent=MS.gene015684.t1 |
chr4.2 | exon | 1645863 | 1646075 | 1645863 | ID=MS.gene015684.t1.exon3;Parent=MS.gene015684.t1 |
chr4.2 | CDS | 1645863 | 1646075 | 1645863 | ID=cds.MS.gene015684.t1;Parent=MS.gene015684.t1 |
chr4.2 | exon | 1645603 | 1645694 | 1645603 | ID=MS.gene015684.t1.exon4;Parent=MS.gene015684.t1 |
chr4.2 | CDS | 1645603 | 1645694 | 1645603 | ID=cds.MS.gene015684.t1;Parent=MS.gene015684.t1 |
Gene Sequence |
Protein sequence |