AlfalfaGEDB | MS.gene011810

M. sativa cultivar XinJiangDaYe / MS.gene011810

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011810.t1	RHN62944.1	86.9	335	44	0	1	335	38	372	9.50E-169	602.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011810.t1	O80888	41.6	269	152	4	1	267	1	266	1.8e-54	214.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011810.t1	A0A072TGP2	86.9	335	44	0	1	335	1	335	6.9e-169	602.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene011810	PPI
MS.gene011810	MS.gene062821	PPI
MS.gene011810	MS.gene56256	PPI
MS.gene011810	MS.gene039215	PPI
MS.gene011810	MS.gene068659	PPI
MS.gene011810	MS.gene063452	PPI
MS.gene011810	MS.gene63514	PPI
MS.gene51627	MS.gene011810	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011810.t1	MTR_0154s0020	92.239	335	26	0	1	335	1	335	0.0	645
MS.gene011810.t1	MTR_0189s0010	91.642	335	28	0	1	335	21	355	0.0	635
MS.gene011810.t1	MTR_0154s0040	90.746	335	31	0	1	335	1	335	0.0	631
MS.gene011810.t1	MTR_5g017110	57.550	351	130	5	2	335	3	351	7.93e-139	397
MS.gene011810.t1	MTR_5g017140	60.148	271	100	4	1	266	1	268	9.42e-114	332
MS.gene011810.t1	MTR_2g023890	40.118	339	186	9	1	335	3	328	1.60e-70	223
MS.gene011810.t1	MTR_2g088020	37.971	345	187	10	1	335	3	330	1.38e-62	204
MS.gene011810.t1	MTR_4g049730	40.000	350	176	14	1	335	1	331	1.73e-61	201
MS.gene011810.t1	MTR_2g005290	38.516	283	147	7	2	260	9	288	8.94e-59	194
MS.gene011810.t1	MTR_3g096230	37.175	269	150	7	3	262	244	502	1.23e-46	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011810.t1	AT4G36950	54.728	349	131	7	1	335	1	336	1.47e-122	355
MS.gene011810.t1	AT3G50310	50.838	358	137	7	1	335	1	342	1.47e-112	330
MS.gene011810.t1	AT5G67080	49.307	361	140	9	1	335	1	344	3.01e-111	327
MS.gene011810.t1	AT5G55090	40.974	349	182	10	2	335	5	344	3.56e-73	233
MS.gene011810.t1	AT5G55090	44.444	288	143	6	2	280	67	346	1.13e-72	234
MS.gene011810.t1	AT2G32510	36.857	350	202	8	1	335	1	346	1.67e-65	211
MS.gene011810.t1	AT4G26890	38.793	348	190	10	1	335	3	340	5.01e-63	207
MS.gene011810.t1	AT1G07150	39.067	343	179	14	3	335	9	331	1.58e-61	204
MS.gene011810.t1	AT1G07150	39.067	343	179	14	3	335	23	345	1.69e-61	204
MS.gene011810.t1	AT1G05100	38.905	347	190	10	1	335	1	337	1.86e-60	197

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Find 75 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTCTTCATCAACT+AGG	0.565944	8.1:-26889929	MS.gene011810:CDS
AACACATTCGCCATTACACG+AGG	0.677670	8.1:-26889763	MS.gene011810:CDS
AATCTGAAGACTCGAATGAA+TGG	0.435554	8.1:-26889193	MS.gene011810:CDS
ACAACAATTGTAAGATGGAT+TGG	0.388405	8.1:-26890084	None:intergenic
ACCATTGAGCTTCACCTGAT+CGG	0.544166	8.1:+26889802	None:intergenic
AGGAAAACCAGCTTGGAATT+TGG	0.241366	8.1:-26889483	MS.gene011810:CDS
AGGTGAAGCTCAATGGTGGC+CGG	0.576353	8.1:-26889796	MS.gene011810:CDS
ATCACTTTGATTTCAATGAT+TGG	0.319475	8.1:-26889253	MS.gene011810:CDS
ATCGGAGAGCGTTCCAGCGG+AGG	0.524424	8.1:+26889820	None:intergenic
ATCTGAAGACTCGAATGAAT+GGG	0.478019	8.1:-26889192	MS.gene011810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTTCTTCATCAACT+AGG	-	chr8.1:26889226-26889245	MS.gene011810:CDS	30.0%
GTGGAATATGAATTTCCTTT+AGG	+	chr8.1:26889151-26889170	None:intergenic	30.0%
TGAAAGATCCAAGAAAAAGA+TGG	-	chr8.1:26889809-26889828	MS.gene011810:CDS	30.0%
TTCTTCACTTCTTCAACAAA+AGG	+	chr8.1:26889859-26889878	None:intergenic	30.0%
AATCTGAAGACTCGAATGAA+TGG	-	chr8.1:26889962-26889981	MS.gene011810:CDS	35.0%
AGATCCAAGAAAAAGATGGA+CGG	-	chr8.1:26889813-26889832	MS.gene011810:CDS	35.0%
ATCTGAAGACTCGAATGAAT+GGG	-	chr8.1:26889963-26889982	MS.gene011810:CDS	35.0%
CTTGATCATATTCATCGCAA+TGG	-	chr8.1:26889430-26889449	MS.gene011810:CDS	35.0%
TCTTCAGATTCTGGTGAATT+TGG	+	chr8.1:26889952-26889971	None:intergenic	35.0%
AGGAAAACCAGCTTGGAATT+TGG	-	chr8.1:26889672-26889691	MS.gene011810:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	26889085	26890092	26889085	ID=MS.gene011810
chr8.1	mRNA	26889085	26890092	26889085	ID=MS.gene011810.t1;Parent=MS.gene011810
chr8.1	exon	26889085	26890092	26889085	ID=MS.gene011810.t1.exon1;Parent=MS.gene011810.t1
chr8.1	CDS	26889085	26890092	26889085	ID=cds.MS.gene011810.t1;Parent=MS.gene011810.t1

Gene Sequence

>MS.gene011810

ATGGATTGGGTACGAGGAGAAACAGTTGGTAGAGGAAGCTTTGCAACTGTTAATTTAGTTATACCTAAAGGAAATTCATATTCCACTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCTTCTTCACTCAAAAACGAGAAACATGTTCTTCATCAACTAGGTTCTTGTCAAAGAATCATTCCTTGTTTCGGTGATGATTACACTTTTGAGAATGGTAAAGAGTATTACAATTTATTTCTCGAATACGCCTCCGCTGGAACGCTCTCCGATCAGGTGAAGCTCAATGGTGGCCGGATACCAGAGCAACACATTCGCCATTACACGAGGTCAATCGTTGAGGGACTTGATCATATTCATCGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAATATTTTAGTATTCAATGATGGTGATATCAAAATTGCTGATTTTGGTCTTGCCAAGAAAACAGGGGAAAAACAGAGTTTTGAATGCAGGGGAACTCCACTTTTTATGTCACCGGAATCGGTTTACCACGGCGAGTATGAATCTCCGGCGGATATATGGGCACTTGGGTGTGCAGTGGTGGAAATGGTAACAGGAAAACCAGCTTGGAATTTGGAGAAAGATTCAAATATATGGTCGTTGTTGCTTCGAATTGGTGCCGGAGAAGAATCGCCGGTGATACCAGAAGAGTTGTCGAAAGAAGGAAAAGATTTTGTAGAGAAGTGTTTTGTGAAAGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTGTTGAAGAAGTGAAGAATGTTGATGAATCATCACCAAGAAATCACTTTGATTTCAATGATTGGGTTTCTAGTGTTAATGATTCGGTTCCAAATTCACCAGAATCTGAAGACTCGAATGAATGGGATTTTGAGTCTAAATTTTGTTCGGTGGTGGACCGGCTCCGGCAGCTTGTGTCTGTTGAAGGGCCGTTGAGTTGGTCGGATTCAGATAGTTGGATTAGTGTTAGGTGA

Protein sequence

>MS.gene011810.t1

MDWVRGETVGRGSFATVNLVIPKGNSYSTPTAVKTSEVSTSSSLKNEKHVLHQLGSCQRIIPCFGDDYTFENGKEYYNLFLEYASAGTLSDQVKLNGGRIPEQHIRHYTRSIVEGLDHIHRNGFVHCDIKLQNILVFNDGDIKIADFGLAKKTGEKQSFECRGTPLFMSPESVYHGEYESPADIWALGCAVVEMVTGKPAWNLEKDSNIWSLLLRIGAGEESPVIPEELSKEGKDFVEKCFVKDPRKRWTAEMLLNHPFVEEVKNVDESSPRNHFDFNDWVSSVNDSVPNSPESEDSNEWDFESKFCSVVDRLRQLVSVEGPLSWSDSDSWISVR