AlfalfaGEDB | MS.gene062821

M. sativa cultivar XinJiangDaYe / MS.gene062821

KEGG: -
GO: -
PFAM: PF06818.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062821.t1	XP_013464384.1	91.9	381	30	1	1	380	1	381	6.70E-118	434.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062821.t1	Q9M9F9	46.0	383	141	11	2	380	4	324	5.7e-33	143.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062821.t1	A0A072V8T5	91.9	381	30	1	1	380	1	381	4.8e-118	434.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene062821	0.811632	6.35E-51	-1.69E-46
MS.gene049190	MS.gene062821	0.839893	1.21E-57	-1.69E-46
MS.gene049271	MS.gene062821	0.802557	5.30E-49	-1.69E-46
MS.gene049341	MS.gene062821	0.830554	2.75E-55	-1.69E-46
MS.gene049501	MS.gene062821	0.822759	1.99E-53	-1.69E-46
MS.gene049672	MS.gene062821	0.800989	1.11E-48	-1.69E-46
MS.gene049711	MS.gene062821	0.81338	2.64E-51	-1.69E-46
MS.gene049821	MS.gene062821	0.828895	6.97E-55	-1.69E-46
MS.gene049824	MS.gene062821	0.846606	1.95E-59	-1.69E-46
MS.gene049825	MS.gene062821	0.837233	5.86E-57	-1.69E-46
MS.gene049850	MS.gene062821	0.843311	1.51E-58	-1.69E-46
MS.gene049873	MS.gene062821	0.819341	1.22E-52	-1.69E-46
MS.gene050020	MS.gene062821	0.857822	1.26E-62	-1.69E-46
MS.gene050241	MS.gene062821	0.828489	8.74E-55	-1.69E-46
MS.gene050586	MS.gene062821	0.81666	4.93E-52	-1.69E-46
MS.gene050630	MS.gene062821	0.803796	2.94E-49	-1.69E-46
MS.gene050807	MS.gene062821	0.861076	1.32E-63	-1.69E-46
MS.gene050808	MS.gene062821	0.830159	3.44E-55	-1.69E-46
MS.gene050815	MS.gene062821	0.802024	6.83E-49	-1.69E-46
MS.gene050901	MS.gene062821	0.81563	8.38E-52	-1.69E-46
MS.gene050959	MS.gene062821	0.805573	1.25E-49	-1.69E-46
MS.gene051021	MS.gene062821	0.810751	9.86E-51	-1.69E-46
MS.gene051199	MS.gene062821	0.800814	1.21E-48	-1.69E-46
MS.gene051247	MS.gene062821	0.848714	5.14E-60	-1.69E-46
MS.gene051279	MS.gene062821	0.809356	1.97E-50	-1.69E-46
MS.gene051328	MS.gene062821	0.824617	7.33E-54	-1.69E-46
MS.gene051388	MS.gene062821	0.828695	7.79E-55	-1.69E-46
MS.gene05157	MS.gene062821	0.849057	4.13E-60	-1.69E-46
MS.gene051700	MS.gene062821	0.847961	8.30E-60	-1.69E-46
MS.gene051719	MS.gene062821	0.885083	1.10E-71	-1.69E-46
MS.gene051720	MS.gene062821	0.884014	2.75E-71	-1.69E-46
MS.gene051744	MS.gene062821	0.826207	3.08E-54	-1.69E-46
MS.gene051957	MS.gene062821	0.832033	1.19E-55	-1.69E-46
MS.gene052020	MS.gene062821	0.841983	3.41E-58	-1.69E-46
MS.gene052032	MS.gene062821	0.807645	4.57E-50	-1.69E-46
MS.gene052133	MS.gene062821	0.862126	6.32E-64	-1.69E-46
MS.gene052516	MS.gene062821	0.828173	1.04E-54	-1.69E-46
MS.gene052561	MS.gene062821	0.812986	3.22E-51	-1.69E-46
MS.gene052582	MS.gene062821	0.808202	3.48E-50	-1.69E-46
MS.gene052584	MS.gene062821	0.812531	4.05E-51	-1.69E-46
MS.gene052611	MS.gene062821	0.815587	8.56E-52	-1.69E-46
MS.gene052613	MS.gene062821	0.817995	2.47E-52	-1.69E-46
MS.gene052665	MS.gene062821	0.858954	5.78E-63	-1.69E-46
MS.gene052732	MS.gene062821	0.869861	2.25E-66	-1.69E-46
MS.gene052863	MS.gene062821	0.810893	9.19E-51	-1.69E-46
MS.gene052879	MS.gene062821	0.825087	5.68E-54	-1.69E-46
MS.gene052880	MS.gene062821	0.815652	8.28E-52	-1.69E-46
MS.gene052896	MS.gene062821	0.830762	2.45E-55	-1.69E-46
MS.gene053122	MS.gene062821	0.81164	6.33E-51	-1.69E-46
MS.gene053144	MS.gene062821	0.875036	4.23E-68	-1.69E-46
MS.gene053174	MS.gene062821	0.84256	2.40E-58	-1.69E-46
MS.gene053221	MS.gene062821	0.822928	1.82E-53	-1.69E-46
MS.gene053226	MS.gene062821	0.843247	1.58E-58	-1.69E-46
MS.gene053563	MS.gene062821	0.801027	1.09E-48	-1.69E-46
MS.gene053581	MS.gene062821	0.853785	1.90E-61	-1.69E-46
MS.gene053599	MS.gene062821	0.833046	6.68E-56	-1.69E-46
MS.gene053883	MS.gene062821	0.824167	9.35E-54	-1.69E-46
MS.gene054550	MS.gene062821	0.845754	3.33E-59	-1.69E-46
MS.gene054584	MS.gene062821	0.873971	9.72E-68	-1.69E-46
MS.gene054651	MS.gene062821	0.806394	8.40E-50	-1.69E-46
MS.gene054791	MS.gene062821	0.803445	3.47E-49	-1.69E-46
MS.gene055144	MS.gene062821	0.81182	5.78E-51	-1.69E-46
MS.gene055357	MS.gene062821	0.817448	3.28E-52	-1.69E-46
MS.gene055465	MS.gene062821	0.892362	1.70E-74	-1.69E-46
MS.gene055466	MS.gene062821	0.895104	1.32E-75	-1.69E-46
MS.gene055468	MS.gene062821	0.88347	4.37E-71	-1.69E-46
MS.gene055469	MS.gene062821	0.847737	9.57E-60	-1.69E-46
MS.gene055512	MS.gene062821	0.828686	7.83E-55	-1.69E-46
MS.gene055537	MS.gene062821	0.863916	1.77E-64	-1.69E-46
MS.gene055580	MS.gene062821	-0.889788	1.77E-73	-1.69E-46
MS.gene055608	MS.gene062821	0.802237	6.17E-49	-1.69E-46
MS.gene055778	MS.gene062821	0.836749	7.80E-57	-1.69E-46
MS.gene055890	MS.gene062821	0.85126	9.96E-61	-1.69E-46
MS.gene055891	MS.gene062821	0.866421	2.89E-65	-1.69E-46
MS.gene056005	MS.gene062821	0.832847	7.48E-56	-1.69E-46
MS.gene056043	MS.gene062821	-0.869267	3.52E-66	-1.69E-46
MS.gene056050	MS.gene062821	0.803343	3.65E-49	-1.69E-46
MS.gene056215	MS.gene062821	0.804924	1.71E-49	-1.69E-46
MS.gene056308	MS.gene062821	0.80508	1.59E-49	-1.69E-46
MS.gene056366	MS.gene062821	0.808035	3.77E-50	-1.69E-46
MS.gene056553	MS.gene062821	0.830899	2.26E-55	-1.69E-46
MS.gene056584	MS.gene062821	0.820677	6.04E-53	-1.69E-46
MS.gene056643	MS.gene062821	0.80468	1.92E-49	-1.69E-46
MS.gene056859	MS.gene062821	0.810647	1.04E-50	-1.69E-46
MS.gene057060	MS.gene062821	0.806123	9.58E-50	-1.69E-46
MS.gene057915	MS.gene062821	0.819139	1.36E-52	-1.69E-46
MS.gene058087	MS.gene062821	0.825944	3.56E-54	-1.69E-46
MS.gene058168	MS.gene062821	0.80183	7.48E-49	-1.69E-46
MS.gene058339	MS.gene062821	0.820403	6.99E-53	-1.69E-46
MS.gene058625	MS.gene062821	0.845639	3.58E-59	-1.69E-46
MS.gene058636	MS.gene062821	0.827828	1.26E-54	-1.69E-46
MS.gene058668	MS.gene062821	0.805323	1.41E-49	-1.69E-46
MS.gene058852	MS.gene062821	0.814698	1.35E-51	-1.69E-46
MS.gene058945	MS.gene062821	0.8074	5.15E-50	-1.69E-46
MS.gene059015	MS.gene062821	0.831504	1.61E-55	-1.69E-46
MS.gene059084	MS.gene062821	0.82304	1.72E-53	-1.69E-46
MS.gene059154	MS.gene062821	0.824503	7.79E-54	-1.69E-46
MS.gene05954	MS.gene062821	0.825281	5.11E-54	-1.69E-46
MS.gene059625	MS.gene062821	0.839915	1.19E-57	-1.69E-46
MS.gene059725	MS.gene062821	0.800142	1.66E-48	-1.69E-46
MS.gene059937	MS.gene062821	0.841741	3.95E-58	-1.69E-46
MS.gene06001	MS.gene062821	0.812533	4.04E-51	-1.69E-46
MS.gene060194	MS.gene062821	0.847407	1.18E-59	-1.69E-46
MS.gene060312	MS.gene062821	0.808265	3.37E-50	-1.69E-46
MS.gene060429	MS.gene062821	0.838197	3.32E-57	-1.69E-46
MS.gene060519	MS.gene062821	0.85864	7.17E-63	-1.69E-46
MS.gene060587	MS.gene062821	0.875964	2.03E-68	-1.69E-46
MS.gene060884	MS.gene062821	0.837441	5.19E-57	-1.69E-46
MS.gene060886	MS.gene062821	0.831642	1.49E-55	-1.69E-46
MS.gene061176	MS.gene062821	0.825228	5.25E-54	-1.69E-46
MS.gene061177	MS.gene062821	0.823894	1.08E-53	-1.69E-46
MS.gene061178	MS.gene062821	0.824696	7.02E-54	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene60217	MS.gene062821	PPI
MS.gene062821	MS.gene011812	PPI
MS.gene062821	MS.gene99206	PPI
MS.gene062821	MS.gene48491	PPI
MS.gene99208	MS.gene062821	PPI
MS.gene56784	MS.gene062821	PPI
MS.gene062821	MS.gene011814	PPI
MS.gene011810	MS.gene062821	PPI
MS.gene010341	MS.gene062821	PPI
MS.gene90501	MS.gene062821	PPI
MS.gene56787	MS.gene062821	PPI
MS.gene010337	MS.gene062821	PPI
MS.gene062821	MS.gene90503	PPI
MS.gene047618	MS.gene062821	PPI
MS.gene011811	MS.gene062821	PPI
MS.gene062821	MS.gene012993	PPI
MS.gene99207	MS.gene062821	PPI
MS.gene054632	MS.gene062821	PPI
MS.gene068659	MS.gene062821	PPI
MS.gene015165	MS.gene062821	PPI
MS.gene99203	MS.gene062821	PPI
MS.gene039215	MS.gene062821	PPI
MS.gene041069	MS.gene062821	PPI
MS.gene56786	MS.gene062821	PPI
MS.gene062821	MS.gene015162	PPI
MS.gene90504	MS.gene062821	PPI
MS.gene047616	MS.gene062821	PPI
MS.gene063452	MS.gene062821	PPI
MS.gene041073	MS.gene062821	PPI
MS.gene90505	MS.gene062821	PPI
MS.gene011807	MS.gene062821	PPI
MS.gene56785	MS.gene062821	PPI
MS.gene38726	MS.gene062821	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062821.t1	MTR_2g070730	94.226	381	21	1	1	380	1	381	0.0	649
MS.gene062821.t1	MTR_8g008740	90.698	172	16	0	209	380	310	481	7.86e-89	276
MS.gene062821.t1	MTR_4g461060	32.353	204	110	6	181	376	431	614	5.40e-15	77.0
MS.gene062821.t1	MTR_4g461060	32.353	204	110	6	181	376	434	617	5.42e-15	77.0
MS.gene062821.t1	MTR_1g066850	26.829	328	195	11	81	379	275	586	4.69e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062821.t1	AT1G17140	48.303	383	156	11	1	380	1	344	8.92e-88	269
MS.gene062821.t1	AT1G17140	48.303	383	156	11	1	380	1	344	8.92e-88	269
MS.gene062821.t1	AT1G78430	48.564	383	131	11	2	380	4	324	1.68e-83	257
MS.gene062821.t1	AT5G60210	27.964	329	175	13	66	376	301	585	7.74e-14	73.6
MS.gene062821.t1	AT5G60210	27.964	329	175	13	66	376	301	585	7.74e-14	73.6
MS.gene062821.t1	AT5G60210	31.667	180	89	6	197	376	416	561	9.08e-14	73.2
MS.gene062821.t1	AT5G60210	31.667	180	89	6	197	376	416	561	9.08e-14	73.2
MS.gene062821.t1	AT5G60210	31.667	180	89	6	197	376	416	561	9.08e-14	73.2
MS.gene062821.t1	AT5G60210	31.667	180	89	6	197	376	416	561	9.08e-14	73.2
MS.gene062821.t1	AT3G53350	25.263	380	190	10	2	304	4	366	3.69e-12	67.8
MS.gene062821.t1	AT3G53350	25.263	380	190	10	2	304	4	366	3.69e-12	67.8
MS.gene062821.t1	AT3G53350	24.866	374	189	9	6	304	21	377	1.78e-11	65.5
MS.gene062821.t1	AT3G53350	25.000	380	193	11	2	304	4	368	3.59e-11	64.7
MS.gene062821.t1	AT3G53350	25.000	380	193	11	2	304	4	368	3.59e-11	64.7
MS.gene062821.t1	AT3G53350	25.000	380	193	11	2	304	4	368	3.59e-11	64.7
MS.gene062821.t1	AT2G37080	39.496	119	60	4	2	113	6	119	6.00e-11	64.3

Find 71 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGAATGTTTGGTGATTTA+TGG	0.158925	2.4:-24646866	MS.gene062821:CDS
TCCATTGAACCACACCTTTC+AGG	0.188017	2.4:+24647017	None:intergenic
GCTGCAGCTGCAGTGCTTGC+AGG	0.211780	2.4:-24647071	MS.gene062821:CDS
GAAGAAATTGAGTAAAGAAT+TGG	0.311524	2.4:-24647222	MS.gene062821:CDS
ATTCATTCAGTTGATTCTTC+AGG	0.316287	2.4:+24647300	None:intergenic
TCTTCTGGTATTAGAATGTT+TGG	0.317878	2.4:-24646876	MS.gene062821:CDS
GATGATCTGGATGATGGTTT+TGG	0.318666	2.4:-24646918	MS.gene062821:CDS
GATCGTCGGTCTCCTAGTTT+TGG	0.320194	2.4:+24647842	None:intergenic
TCCTGGTATGGTTGATGATC+TGG	0.327726	2.4:-24646931	MS.gene062821:CDS
CAACTTCTCATTCAACTTCT+CGG	0.328807	2.4:+24647181	None:intergenic
TTCTCTGGCTCTGATGTTGC+TGG	0.333734	2.4:+24647431	None:intergenic
CTGTCAGCGGAAATCACTTT+TGG	0.335155	2.4:+24646832	None:intergenic
AGCGTCGTTGAAATCAAGTT+TGG	0.357678	2.4:-24647369	MS.gene062821:CDS
TTTGGACTTCGGTCAGTAAC+CGG	0.385141	2.4:+24647860	None:intergenic
GATGTTGCTGGTTGAGTTTG+AGG	0.385163	2.4:+24647443	None:intergenic
TCCTCCACAAAAGGCTTCTC+TGG	0.388495	2.4:+24647416	None:intergenic
TAGCATACATACCTTGATCT+TGG	0.417303	2.4:+24648238	None:intergenic
AAGAATTGGAAGCTAGTAAA+GGG	0.424711	2.4:-24647208	MS.gene062821:CDS
GAAATCTGTGGAAGAAGAAA+AGG	0.430192	2.4:-24647159	MS.gene062821:CDS
TGAAGTTCCTATCGAAAAGT+TGG	0.430569	2.4:-24647504	MS.gene062821:CDS
TCCTGAAAGGTGTGGTTCAA+TGG	0.435919	2.4:-24647018	MS.gene062821:CDS
TTGATATGAGTGCTGCTGCT+AGG	0.438889	2.4:-24647043	MS.gene062821:CDS
GCAGCTGCAGTGCTTGCAGG+AGG	0.450210	2.4:-24647068	MS.gene062821:CDS
AAAGAATTGGAAGCTAGTAA+AGG	0.459045	2.4:-24647209	MS.gene062821:CDS
GGTGATTTATGGAAGAAGAA+AGG	0.459584	2.4:-24646855	MS.gene062821:CDS
CATGGATATGTAGGTTCTCC+TGG	0.462446	2.4:-24646948	MS.gene062821:CDS
AGTGTCAGCTCCTCCACAAA+AGG	0.476304	2.4:+24647407	None:intergenic
AATCAGAAATGAAGAAGCTA+AGG	0.488261	2.4:-24647127	MS.gene062821:CDS
TGATATGAGTGCTGCTGCTA+GGG	0.490148	2.4:-24647042	MS.gene062821:CDS
AAAACATGATGTATTTCAAA+AGG	0.491750	2.4:-24647468	MS.gene062821:CDS
ACACCTGGTGGAAGGTATCA+TGG	0.495632	2.4:-24646966	MS.gene062821:CDS
CATATCAAATGCCAAGATCA+AGG	0.498306	2.4:-24648249	None:intergenic
ATGGATAAGCACTTTGGCGG+TGG	0.498541	2.4:-24646999	MS.gene062821:CDS
TCGGATTGAGTACTACCTCT+TGG	0.503758	2.4:+24647818	None:intergenic
CTTCTTCTGATTTACTGTCT+CGG	0.503831	2.4:+24647799	None:intergenic
ATGGTTGATGATCTGGATGA+TGG	0.513817	2.4:-24646924	MS.gene062821:CDS
GGAAGGTATCATGGATATGT+AGG	0.515502	2.4:-24646957	MS.gene062821:CDS
AGTAAAAGCTGCTGAAACAA+AGG	0.517289	2.4:-24647267	MS.gene062821:CDS
GTCGTTGAAATCAAGTTTGG+AGG	0.523652	2.4:-24647366	MS.gene062821:CDS
ATATGTAGGTTCTCCTGGTA+TGG	0.532614	2.4:-24646943	MS.gene062821:CDS
GCTGCTGAAACAAAGGAAGA+AGG	0.552537	2.4:-24647260	MS.gene062821:CDS
CAAGAGGTACTCATCAGCTT+CGG	0.558421	2.4:-24647922	MS.gene062821:CDS
TCAGGTATAATAACATCTTG+AGG	0.560208	2.4:+24647554	None:intergenic
TCAATGGATAAGCACTTTGG+CGG	0.562568	2.4:-24647002	MS.gene062821:CDS
GCAGATTTAGAATCACAGCT+TGG	0.568236	2.4:-24647761	MS.gene062821:CDS
TCCATCACATCATCATCGAC+CGG	0.578161	2.4:-24647879	MS.gene062821:CDS
GGTTCAATGGATAAGCACTT+TGG	0.584940	2.4:-24647005	MS.gene062821:CDS
CGAAGCTGATGAGTACCTCT+TGG	0.586620	2.4:+24647923	None:intergenic
CCTCTTGGTGACTGCCTCTG+AGG	0.586987	2.4:+24647938	None:intergenic
AAAGGAAGAAGGAATGACAA+TGG	0.591938	2.4:-24647249	MS.gene062821:CDS
ACAGTAAATCAGAAGAAGCT+CGG	0.598142	2.4:-24647794	MS.gene062821:CDS
TCCAGATCATCAACCATACC+AGG	0.598846	2.4:+24646930	None:intergenic
CTGCTGCTAGGGTTCCTGAA+AGG	0.600125	2.4:-24647031	MS.gene062821:CDS
TACTACCTCTTGGAGATCGT+CGG	0.607115	2.4:+24647828	None:intergenic
CTGTGGAAGAAGAAAAGGCA+GGG	0.608960	2.4:-24647154	MS.gene062821:CDS
ACCGGTCGATGATGATGTGA+TGG	0.611787	2.4:+24647878	None:intergenic
ATCAGAAATGAAGAAGCTAA+GGG	0.620572	2.4:-24647126	MS.gene062821:CDS
CATTTGAGACACCTGGTGGA+AGG	0.626032	2.4:-24646974	MS.gene062821:CDS
AGCTCAATCAGTAGTTCCTG+TGG	0.631311	2.4:-24647648	MS.gene062821:CDS
TCTGTGGAAGAAGAAAAGGC+AGG	0.632238	2.4:-24647155	MS.gene062821:CDS
GGGGAACTGATTTGCCTCAG+AGG	0.632430	2.4:-24647952	MS.gene062821:CDS
ACTGACCGAAGTCCAAAACT+AGG	0.638929	2.4:-24647854	MS.gene062821:CDS
GCTAGGGTTCCTGAAAGGTG+TGG	0.647120	2.4:-24647026	MS.gene062821:CDS
ATGATGTGATGGATCTGAGT+CGG	0.663820	2.4:+24647889	None:intergenic
GGTGGAACATTTGAGACACC+TGG	0.665184	2.4:-24646981	MS.gene062821:CDS
TATCCATGATACCTTCCACC+AGG	0.668548	2.4:+24646963	None:intergenic
GAATGAGAAGTTGAAATCTG+TGG	0.677488	2.4:-24647171	MS.gene062821:CDS
CCTCAGAGGCAGTCACCAAG+AGG	0.691940	2.4:-24647938	MS.gene062821:CDS
TAAGGGTGCAGACAGAACAA+TGG	0.700140	2.4:-24647109	MS.gene062821:CDS
GGAACATTTGAGACACCTGG+TGG	0.711032	2.4:-24646978	MS.gene062821:CDS
GGAGACCGACGATCTCCAAG+AGG	0.717137	2.4:-24647833	MS.gene062821:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATAATTACATTTTAAAAG+AGG	+	chr2.4:24646905-24646924	None:intergenic	10.0%
!!!	AATAATTACATTTTAAAAGA+GGG	+	chr2.4:24646904-24646923	None:intergenic	10.0%
!!!	ATTAATTGTTGTTTTCAAAT+AGG	-	chr2.4:24647113-24647132	MS.gene062821:CDS	15.0%
!!!	TTAATTGTTGTTTTCAAATA+GGG	-	chr2.4:24647114-24647133	MS.gene062821:CDS	15.0%
!!	AAAACATGATGTATTTCAAA+AGG	-	chr2.4:24647618-24647637	MS.gene062821:CDS	20.0%
!!	ATTAATACAGCTTAAAAGTT+TGG	+	chr2.4:24647099-24647118	None:intergenic	20.0%
!!	TGATAGAAAAAACAAAATCA+TGG	-	chr2.4:24647016-24647035	MS.gene062821:CDS	20.0%
!!!	TAATTGTTGTTTTCAAATAG+GGG	-	chr2.4:24647115-24647134	MS.gene062821:CDS	20.0%
!!!	TGTTTTTTCTATCAAAATCA+TGG	+	chr2.4:24647010-24647029	None:intergenic	20.0%
!	GAAGAAATTGAGTAAAGAAT+TGG	-	chr2.4:24647864-24647883	MS.gene062821:CDS	25.0%
!	GAATCAGTGTTAAAAAATCA+CGG	+	chr2.4:24647077-24647096	None:intergenic	25.0%
!!	TTAGAATGTTTGGTGATTTA+TGG	-	chr2.4:24648220-24648239	MS.gene062821:intron	25.0%
	AAAGAATTGGAAGCTAGTAA+AGG	-	chr2.4:24647877-24647896	MS.gene062821:CDS	30.0%
	AAGAATTGGAAGCTAGTAAA+GGG	-	chr2.4:24647878-24647897	MS.gene062821:CDS	30.0%
	AAGTTTGGAGGAAAAAAAGA+AGG	-	chr2.4:24647732-24647751	MS.gene062821:CDS	30.0%
	AATCAGAAATGAAGAAGCTA+AGG	-	chr2.4:24647959-24647978	MS.gene062821:intron	30.0%
	ATCAGAAATGAAGAAGCTAA+GGG	-	chr2.4:24647960-24647979	MS.gene062821:intron	30.0%
	GTATAACATGATTAGTAGCA+AGG	+	chr2.4:24646933-24646952	None:intergenic	30.0%
	TCAGGTATAATAACATCTTG+AGG	+	chr2.4:24647535-24647554	None:intergenic	30.0%
	TCTTCTGGTATTAGAATGTT+TGG	-	chr2.4:24648210-24648229	MS.gene062821:intron	30.0%
!	ATTCATTCAGTTGATTCTTC+AGG	+	chr2.4:24647789-24647808	None:intergenic	30.0%
!!	TTTGGTAGTGGAAAAAAGAA+GGG	-	chr2.4:24648186-24648205	MS.gene062821:intron	30.0%
!!	TTTTGTTTGACTGTGAGTTT+AGG	-	chr2.4:24646966-24646985	MS.gene062821:CDS	30.0%
!!!	TTTTGGTAGTGGAAAAAAGA+AGG	-	chr2.4:24648185-24648204	MS.gene062821:intron	30.0%
	AAAGGAAGAAGGAATGACAA+TGG	-	chr2.4:24647837-24647856	MS.gene062821:CDS	35.0%
	ACAGTAAATCAGAAGAAGCT+CGG	-	chr2.4:24647292-24647311	MS.gene062821:CDS	35.0%
	AGCTGAAAAGAAAAAAGCTG+AGG	-	chr2.4:24647399-24647418	MS.gene062821:CDS	35.0%
	AGTAAAAGCTGCTGAAACAA+AGG	-	chr2.4:24647819-24647838	MS.gene062821:CDS	35.0%
	CAACTTCTCATTCAACTTCT+CGG	+	chr2.4:24647908-24647927	None:intergenic	35.0%
	CTTCTTCTGATTTACTGTCT+CGG	+	chr2.4:24647290-24647309	None:intergenic	35.0%
	GAAATCTGTGGAAGAAGAAA+AGG	-	chr2.4:24647927-24647946	MS.gene062821:CDS	35.0%
	GAATGAGAAGTTGAAATCTG+TGG	-	chr2.4:24647915-24647934	MS.gene062821:CDS	35.0%
	GGTGATTTATGGAAGAAGAA+AGG	-	chr2.4:24648231-24648250	MS.gene062821:intron	35.0%
	GTGTTAAAAAATCACGGTCT+CGG	+	chr2.4:24647071-24647090	None:intergenic	35.0%
	TAGCATACATACCTTGATCT+TGG	+	chr2.4:24646851-24646870	None:intergenic	35.0%
	TGAAGTTCCTATCGAAAAGT+TGG	-	chr2.4:24647582-24647601	MS.gene062821:CDS	35.0%
!	GTCTCTTCTTGATTTTCATC+AGG	+	chr2.4:24647553-24647572	None:intergenic	35.0%
!	TCAATTGCCAACTTTTCGAT+AGG	+	chr2.4:24647592-24647611	None:intergenic	35.0%
!	TCTTGAAACTTTTCTACCAC+AGG	+	chr2.4:24647457-24647476	None:intergenic	35.0%
	AGCGTCGTTGAAATCAAGTT+TGG	-	chr2.4:24647717-24647736	MS.gene062821:CDS	40.0%
	ATATGTAGGTTCTCCTGGTA+TGG	-	chr2.4:24648143-24648162	MS.gene062821:intron	40.0%
	GGAAAAAAGAAGGGTTCTTC+TGG	-	chr2.4:24648195-24648214	MS.gene062821:intron	40.0%
	GGAGGAAAAAAAGAAGGAAC+TGG	-	chr2.4:24647738-24647757	MS.gene062821:CDS	40.0%
	GGTTCAATGGATAAGCACTT+TGG	-	chr2.4:24648081-24648100	MS.gene062821:intron	40.0%
	GTCGTTGAAATCAAGTTTGG+AGG	-	chr2.4:24647720-24647739	MS.gene062821:CDS	40.0%
	TCAATGGATAAGCACTTTGG+CGG	-	chr2.4:24648084-24648103	MS.gene062821:intron	40.0%
!	GCAGATTTAGAATCACAGCT+TGG	-	chr2.4:24647325-24647344	MS.gene062821:CDS	40.0%
!!	ATGATGTGATGGATCTGAGT+CGG	+	chr2.4:24647200-24647219	None:intergenic	40.0%
!!	ATGGTTGATGATCTGGATGA+TGG	-	chr2.4:24648162-24648181	MS.gene062821:intron	40.0%
!!	GATGATCTGGATGATGGTTT+TGG	-	chr2.4:24648168-24648187	MS.gene062821:intron	40.0%
!!	GGAAGGTATCATGGATATGT+AGG	-	chr2.4:24648129-24648148	MS.gene062821:intron	40.0%
	ACTGACCGAAGTCCAAAACT+AGG	-	chr2.4:24647232-24647251	MS.gene062821:CDS	45.0%
	AGCTCAATCAGTAGTTCCTG+TGG	-	chr2.4:24647438-24647457	MS.gene062821:CDS	45.0%
	CATGGATATGTAGGTTCTCC+TGG	-	chr2.4:24648138-24648157	MS.gene062821:intron	45.0%
	CTGTGGAAGAAGAAAAGGCA+GGG	-	chr2.4:24647932-24647951	MS.gene062821:CDS	45.0%
	GCTGCTGAAACAAAGGAAGA+AGG	-	chr2.4:24647826-24647845	MS.gene062821:CDS	45.0%
	TACTACCTCTTGGAGATCGT+CGG	+	chr2.4:24647261-24647280	None:intergenic	45.0%
	TATCCATGATACCTTCCACC+AGG	+	chr2.4:24648126-24648145	None:intergenic	45.0%
	TCCAGATCATCAACCATACC+AGG	+	chr2.4:24648159-24648178	None:intergenic	45.0%
	TCCATCACATCATCATCGAC+CGG	-	chr2.4:24647207-24647226	MS.gene062821:CDS	45.0%
	TCCATTGAACCACACCTTTC+AGG	+	chr2.4:24648072-24648091	None:intergenic	45.0%
	TCGGATTGAGTACTACCTCT+TGG	+	chr2.4:24647271-24647290	None:intergenic	45.0%
	TCTGTGGAAGAAGAAAAGGC+AGG	-	chr2.4:24647931-24647950	MS.gene062821:CDS	45.0%
	TTTGGACTTCGGTCAGTAAC+CGG	+	chr2.4:24647229-24647248	None:intergenic	45.0%
!	GATGTTGCTGGTTGAGTTTG+AGG	+	chr2.4:24647646-24647665	None:intergenic	45.0%
!	TAAGGGTGCAGACAGAACAA+TGG	-	chr2.4:24647977-24647996	MS.gene062821:intron	45.0%
!	TCACGGTCTCGGATTTTGTA+AGG	+	chr2.4:24647060-24647079	None:intergenic	45.0%
!	TCCTGAAAGGTGTGGTTCAA+TGG	-	chr2.4:24648068-24648087	MS.gene062821:intron	45.0%
!	TGATATGAGTGCTGCTGCTA+GGG	-	chr2.4:24648044-24648063	MS.gene062821:intron	45.0%
!	TTGATATGAGTGCTGCTGCT+AGG	-	chr2.4:24648043-24648062	MS.gene062821:intron	45.0%
!!	CAAGAGGTACTCATCAGCTT+CGG	-	chr2.4:24647164-24647183	MS.gene062821:CDS	45.0%
!!	TCCTGGTATGGTTGATGATC+TGG	-	chr2.4:24648155-24648174	MS.gene062821:intron	45.0%
!!!	CTGGATGATGGTTTTGGTAG+TGG	-	chr2.4:24648174-24648193	MS.gene062821:intron	45.0%
!!!	GGTCTCCTAGTTTTGGACTT+CGG	+	chr2.4:24647240-24647259	None:intergenic	45.0%
	AGTGTCAGCTCCTCCACAAA+AGG	+	chr2.4:24647682-24647701	None:intergenic	50.0%
	ATGGATAAGCACTTTGGCGG+TGG	-	chr2.4:24648087-24648106	MS.gene062821:intron	50.0%
	CGAAGCTGATGAGTACCTCT+TGG	+	chr2.4:24647166-24647185	None:intergenic	50.0%
	TCCTCCACAAAAGGCTTCTC+TGG	+	chr2.4:24647673-24647692	None:intergenic	50.0%
!	ACCGGTCGATGATGATGTGA+TGG	+	chr2.4:24647211-24647230	None:intergenic	50.0%
!	AGAGCCAGAGAAGCCTTTTG+TGG	-	chr2.4:24647666-24647685	MS.gene062821:CDS	50.0%
!	CATTTGAGACACCTGGTGGA+AGG	-	chr2.4:24648112-24648131	MS.gene062821:intron	50.0%
!	GATCGTCGGTCTCCTAGTTT+TGG	+	chr2.4:24647247-24647266	None:intergenic	50.0%
!	GGAACATTTGAGACACCTGG+TGG	-	chr2.4:24648108-24648127	MS.gene062821:intron	50.0%
!	GGTGGAACATTTGAGACACC+TGG	-	chr2.4:24648105-24648124	MS.gene062821:intron	50.0%
!!	ACACCTGGTGGAAGGTATCA+TGG	-	chr2.4:24648120-24648139	MS.gene062821:intron	50.0%
!!	TTCTCTGGCTCTGATGTTGC+TGG	+	chr2.4:24647658-24647677	None:intergenic	50.0%
	CTGCTGCTAGGGTTCCTGAA+AGG	-	chr2.4:24648055-24648074	MS.gene062821:intron	55.0%
	GCTAGGGTTCCTGAAAGGTG+TGG	-	chr2.4:24648060-24648079	MS.gene062821:intron	55.0%
!	GCCAGAGAAGCCTTTTGTGG+AGG	-	chr2.4:24647669-24647688	MS.gene062821:CDS	55.0%
!!	GGGGAACTGATTTGCCTCAG+AGG	-	chr2.4:24647134-24647153	MS.gene062821:CDS	55.0%
	CCTCAGAGGCAGTCACCAAG+AGG	-	chr2.4:24647148-24647167	MS.gene062821:CDS	60.0%
	GGAGACCGACGATCTCCAAG+AGG	-	chr2.4:24647253-24647272	MS.gene062821:CDS	60.0%
!	CCTCTTGGTGACTGCCTCTG+AGG	+	chr2.4:24647151-24647170	None:intergenic	60.0%
	GCAGCTGCAGTGCTTGCAGG+AGG	-	chr2.4:24648018-24648037	MS.gene062821:intron	65.0%
	GCTGCAGCTGCAGTGCTTGC+AGG	-	chr2.4:24648015-24648034	MS.gene062821:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	24646845	24648263	24646845	ID=MS.gene062821
chr2.4	mRNA	24646845	24648263	24646845	ID=MS.gene062821.t1;Parent=MS.gene062821
chr2.4	exon	24648250	24648263	24648250	ID=MS.gene062821.t1.exon1;Parent=MS.gene062821.t1
chr2.4	CDS	24648250	24648263	24648250	ID=cds.MS.gene062821.t1;Parent=MS.gene062821.t1
chr2.4	exon	24646845	24647973	24646845	ID=MS.gene062821.t1.exon2;Parent=MS.gene062821.t1
chr2.4	CDS	24646845	24647973	24646845	ID=cds.MS.gene062821.t1;Parent=MS.gene062821.t1

Gene Sequence

>MS.gene062821

ATGCCAAGATCAAGGTATGTATGCTAAGCTAACTTATAAAGTTACTATTATTTTTGCCCTCTTTTAAAATGTAATTATTTGATCTCCTTGCTACTAATCATGTTATACAACATTATGCATGTTTTGTTTGACTGTGAGTTTAGGCATAATCGCAGTGTGTTGCCATGATTTTGATAGAAAAAACAAAATCATGGCAGCACACTGCGATTCTACCTTACAAAATCCGAGACCGTGATTTTTTAACACTGATTCCAAACTTTTAAGCTGTATTAATTGTTGTTTTCAAATAGGGGAACTGATTTGCCTCAGAGGCAGTCACCAAGAGGTACTCATCAGCTTCGGACATCGAGTTCCGACTCAGATCCATCACATCATCATCGACCGGTTACTGACCGAAGTCCAAAACTAGGAGACCGACGATCTCCAAGAGGTAGTACTCAATCCGAGACAGTAAATCAGAAGAAGCTCGGAACTCGCATTGCAGATTTAGAATCACAGCTTGGTCAAGCACAACAAGAGTTGAAAAATTTGAAAAATCAACTATCTTCTGCAGAAGCTGAAAAGAAAAAAGCTGAGGATGAACTAGTGAAGAAAGCTCAATCAGTAGTTCCTGTGGTAGAAAAGTTTCAAGAGAAAAAAAGCATTTCAAAGAAAGCTCAAGAATGTAACATCAAAGCTGAAACAAAACCTCAAGATGTTATTATACCTGATGAAAATCAAGAAGAGACTGACGTGTTTGAAGTTCCTATCGAAAAGTTGGCAATTGAATTCAAAAAACATGATGTATTTCAAAAGGAACCTCAAACTCAACCAGCAACATCAGAGCCAGAGAAGCCTTTTGTGGAGGAGCTGACACTTAAAAACGAAGAAATAGCGTCGTTGAAATCAAGTTTGGAGGAAAAAAAGAAGGAACTGGAATCAATGAGTAATGAAAACGATAACCTGAAGAATCAACTGAATGAATCAGTTTCAAAAGTAAAAGCTGCTGAAACAAAGGAAGAAGGAATGACAATGGAGATGAAGAAATTGAGTAAAGAATTGGAAGCTAGTAAAGGGAATGCCGAGAAGTTGAATGAGAAGTTGAAATCTGTGGAAGAAGAAAAGGCAGGGTTAGAATCAGAAATGAAGAAGCTAAGGGTGCAGACAGAACAATGGAGAAAAGCAGCTGATGCTGCAGCTGCAGTGCTTGCAGGAGGTTTTGATATGAGTGCTGCTGCTAGGGTTCCTGAAAGGTGTGGTTCAATGGATAAGCACTTTGGCGGTGGAACATTTGAGACACCTGGTGGAAGGTATCATGGATATGTAGGTTCTCCTGGTATGGTTGATGATCTGGATGATGGTTTTGGTAGTGGAAAAAAGAAGGGTTCTTCTGGTATTAGAATGTTTGGTGATTTATGGAAGAAGAAAGGCCAAAAGTGA

Protein sequence

>MS.gene062821.t1

MPRSRGTDLPQRQSPRGTHQLRTSSSDSDPSHHHRPVTDRSPKLGDRRSPRGSTQSETVNQKKLGTRIADLESQLGQAQQELKNLKNQLSSAEAEKKKAEDELVKKAQSVVPVVEKFQEKKSISKKAQECNIKAETKPQDVIIPDENQEETDVFEVPIEKLAIEFKKHDVFQKEPQTQPATSEPEKPFVEELTLKNEEIASLKSSLEEKKKELESMSNENDNLKNQLNESVSKVKAAETKEEGMTMEMKKLSKELEASKGNAEKLNEKLKSVEEEKAGLESEMKKLRVQTEQWRKAADAAAAVLAGGFDMSAAARVPERCGSMDKHFGGGTFETPGGRYHGYVGSPGMVDDLDDGFGSGKKKGSSGIRMFGDLWKKKGQK