Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039215.t1 | XP_013464384.1 | 91.3 | 381 | 32 | 1 | 1 | 380 | 1 | 381 | 9.60E-117 | 430.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039215.t1 | Q9M9F9 | 46.2 | 383 | 140 | 11 | 2 | 380 | 4 | 324 | 6.7e-34 | 146.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039215.t1 | A0A072V8T5 | 91.3 | 381 | 32 | 1 | 1 | 380 | 1 | 381 | 6.9e-117 | 430.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039215.t1 | MTR_2g070730 | 94.226 | 381 | 21 | 1 | 1 | 380 | 1 | 381 | 0.0 | 646 |
MS.gene039215.t1 | MTR_8g008740 | 88.701 | 177 | 20 | 0 | 204 | 380 | 305 | 481 | 9.44e-89 | 276 |
MS.gene039215.t1 | MTR_4g461060 | 32.353 | 204 | 110 | 6 | 181 | 376 | 434 | 617 | 5.87e-15 | 76.6 |
MS.gene039215.t1 | MTR_4g461060 | 32.353 | 204 | 110 | 6 | 181 | 376 | 431 | 614 | 6.07e-15 | 76.6 |
MS.gene039215.t1 | MTR_1g066850 | 29.442 | 197 | 115 | 6 | 194 | 379 | 403 | 586 | 4.95e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039215.t1 | AT1G17140 | 48.564 | 383 | 155 | 11 | 1 | 380 | 1 | 344 | 6.36e-89 | 272 |
MS.gene039215.t1 | AT1G17140 | 48.564 | 383 | 155 | 11 | 1 | 380 | 1 | 344 | 6.36e-89 | 272 |
MS.gene039215.t1 | AT1G78430 | 48.564 | 383 | 131 | 11 | 2 | 380 | 4 | 324 | 6.83e-84 | 258 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 301 | 585 | 5.55e-14 | 73.9 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 301 | 585 | 5.55e-14 | 73.9 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 277 | 561 | 5.84e-14 | 73.6 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 277 | 561 | 5.84e-14 | 73.6 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 277 | 561 | 5.84e-14 | 73.6 |
MS.gene039215.t1 | AT5G60210 | 27.964 | 329 | 175 | 13 | 66 | 376 | 277 | 561 | 5.84e-14 | 73.6 |
MS.gene039215.t1 | AT3G53350 | 25.263 | 380 | 190 | 10 | 2 | 304 | 4 | 366 | 3.90e-12 | 67.8 |
MS.gene039215.t1 | AT3G53350 | 25.263 | 380 | 190 | 10 | 2 | 304 | 4 | 366 | 3.90e-12 | 67.8 |
MS.gene039215.t1 | AT3G53350 | 24.866 | 374 | 189 | 9 | 6 | 304 | 21 | 377 | 2.10e-11 | 65.5 |
MS.gene039215.t1 | AT3G53350 | 25.000 | 380 | 193 | 11 | 2 | 304 | 4 | 368 | 3.66e-11 | 64.7 |
MS.gene039215.t1 | AT3G53350 | 25.000 | 380 | 193 | 11 | 2 | 304 | 4 | 368 | 3.66e-11 | 64.7 |
MS.gene039215.t1 | AT3G53350 | 25.000 | 380 | 193 | 11 | 2 | 304 | 4 | 368 | 3.66e-11 | 64.7 |
MS.gene039215.t1 | AT2G37080 | 39.496 | 119 | 60 | 4 | 2 | 113 | 6 | 119 | 4.16e-11 | 65.1 |
Find 73 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGAATGTTTGGTGATTTA+TGG | 0.158925 | 2.1:-27597315 | MS.gene039215:CDS |
TCCATTGAACCACACCTTTC+AGG | 0.188017 | 2.1:+27597466 | None:intergenic |
GCTGCAGCTGCAGTGCTTGC+AGG | 0.211780 | 2.1:-27597520 | MS.gene039215:CDS |
CGGGACTCGCATTGCAGATT+TGG | 0.237903 | 2.1:-27598223 | MS.gene039215:CDS |
GAAGAAATTGAGTAAAGAAT+TGG | 0.311524 | 2.1:-27597671 | MS.gene039215:CDS |
ATTCATTCAGTTGATTCTTC+AGG | 0.316287 | 2.1:+27597749 | None:intergenic |
TCTTCTGGTATTAGAATGTT+TGG | 0.317878 | 2.1:-27597325 | MS.gene039215:CDS |
GATGATCTGGATGATGGTTT+TGG | 0.318666 | 2.1:-27597367 | MS.gene039215:CDS |
GATCGTCGGTCTCCTAGTTT+TGG | 0.320194 | 2.1:+27598291 | None:intergenic |
TCCTGGTATGGTTGATGATC+TGG | 0.327726 | 2.1:-27597380 | MS.gene039215:CDS |
CAACTTCTCATTCAACTTCT+CGG | 0.328807 | 2.1:+27597630 | None:intergenic |
TTCTCTGGCTCTGATGTTGC+TGG | 0.333734 | 2.1:+27597880 | None:intergenic |
AGCGTCGTTGAAATCAAGTT+TGG | 0.357678 | 2.1:-27597818 | MS.gene039215:CDS |
GCAGGTGCGGAAATCACTTT+TGG | 0.364207 | 2.1:+27597281 | None:intergenic |
TTTGGACTTCGGTCAGTAAC+CGG | 0.385141 | 2.1:+27598309 | None:intergenic |
GATGTTGCTGGTTGAGTTTG+AGG | 0.385163 | 2.1:+27597892 | None:intergenic |
TCCTCCACAAAAGGCTTCTC+TGG | 0.388495 | 2.1:+27597865 | None:intergenic |
TAACATACATACCTTGATCT+TGG | 0.405582 | 2.1:+27598692 | None:intergenic |
AAGAATTGGAAGCTAGTAAA+GGG | 0.424711 | 2.1:-27597657 | MS.gene039215:CDS |
GAAATCTGTGGAAGAAGAAA+AGG | 0.430192 | 2.1:-27597608 | MS.gene039215:CDS |
TGAAGTTCCTATCGAAAAGT+TGG | 0.430569 | 2.1:-27597953 | MS.gene039215:CDS |
TCCTGAAAGGTGTGGTTCAA+TGG | 0.435919 | 2.1:-27597467 | MS.gene039215:CDS |
TTGATATGAGTGCTGCTGCT+AGG | 0.438889 | 2.1:-27597492 | MS.gene039215:CDS |
GCAGCTGCAGTGCTTGCAGG+AGG | 0.450210 | 2.1:-27597517 | MS.gene039215:CDS |
AAAGAATTGGAAGCTAGTAA+AGG | 0.459045 | 2.1:-27597658 | MS.gene039215:CDS |
GGTGATTTATGGAAGAAGAA+AGG | 0.459584 | 2.1:-27597304 | MS.gene039215:CDS |
CATGGATATGTAGGTTCTCC+TGG | 0.462446 | 2.1:-27597397 | MS.gene039215:CDS |
AGTGTCAGCTCCTCCACAAA+AGG | 0.476304 | 2.1:+27597856 | None:intergenic |
AATCAGAAATGAAGAAGCTA+AGG | 0.488261 | 2.1:-27597576 | MS.gene039215:CDS |
AAAACATGATGTATTTGAAA+AGG | 0.489311 | 2.1:-27597917 | MS.gene039215:CDS |
TGATATGAGTGCTGCTGCTA+GGG | 0.490148 | 2.1:-27597491 | MS.gene039215:CDS |
ATGGATAAGCACTTTGGTGG+TGG | 0.495371 | 2.1:-27597448 | MS.gene039215:CDS |
ACACCTGGTGGAAGGTATCA+TGG | 0.495632 | 2.1:-27597415 | MS.gene039215:CDS |
CATATCAAATGCCAAGATCA+AGG | 0.498306 | 2.1:-27598703 | None:intergenic |
TCGGATTGAGTACCACCTCT+TGG | 0.503758 | 2.1:+27598267 | None:intergenic |
CTTCTTCTGATTTACTGTCT+CGG | 0.503831 | 2.1:+27598248 | None:intergenic |
ATGGTTGATGATCTGGATGA+TGG | 0.513817 | 2.1:-27597373 | MS.gene039215:CDS |
GGAAGGTATCATGGATATGT+AGG | 0.515502 | 2.1:-27597406 | MS.gene039215:CDS |
AGTAAAAGCTGCTGAAACAA+AGG | 0.517289 | 2.1:-27597716 | MS.gene039215:CDS |
GTCGTTGAAATCAAGTTTGG+AGG | 0.523652 | 2.1:-27597815 | MS.gene039215:CDS |
ATATGTAGGTTCTCCTGGTA+TGG | 0.532614 | 2.1:-27597392 | MS.gene039215:CDS |
CAGTAAATCAGAAGAAGCTC+GGG | 0.538053 | 2.1:-27598242 | MS.gene039215:CDS |
GCAGATTTGGAATCACAGCT+TGG | 0.551467 | 2.1:-27598210 | MS.gene039215:CDS |
GCTGCTGAAACAAAGGAAGA+AGG | 0.552537 | 2.1:-27597709 | MS.gene039215:CDS |
ACAGTAAATCAGAAGAAGCT+CGG | 0.553824 | 2.1:-27598243 | MS.gene039215:CDS |
CAAGAGGTACTCATCAGCTT+CGG | 0.558421 | 2.1:-27598371 | MS.gene039215:CDS |
TCCATCACATCATCATCGAC+CGG | 0.578161 | 2.1:-27598328 | MS.gene039215:CDS |
CGAAGCTGATGAGTACCTCT+TGG | 0.586620 | 2.1:+27598372 | None:intergenic |
CCTCTTGGTGACTGCCTCTG+AGG | 0.586987 | 2.1:+27598387 | None:intergenic |
AAAGGAAGAAGGAATGACAA+TGG | 0.591938 | 2.1:-27597698 | MS.gene039215:CDS |
TCCAGATCATCAACCATACC+AGG | 0.598846 | 2.1:+27597379 | None:intergenic |
CTGCTGCTAGGGTTCCTGAA+AGG | 0.600125 | 2.1:-27597480 | MS.gene039215:CDS |
TCAATGGATAAGCACTTTGG+TGG | 0.605990 | 2.1:-27597451 | MS.gene039215:CDS |
CTGTGGAAGAAGAAAAGGCA+GGG | 0.608960 | 2.1:-27597603 | MS.gene039215:CDS |
ACCGGTCGATGATGATGTGA+TGG | 0.611787 | 2.1:+27598327 | None:intergenic |
TACCACCTCTTGGAGATCGT+CGG | 0.618257 | 2.1:+27598277 | None:intergenic |
ATCAGAAATGAAGAAGCTAA+GGG | 0.620572 | 2.1:-27597575 | MS.gene039215:CDS |
CATTTGAGACACCTGGTGGA+AGG | 0.626032 | 2.1:-27597423 | MS.gene039215:CDS |
GGTTCAATGGATAAGCACTT+TGG | 0.630664 | 2.1:-27597454 | MS.gene039215:CDS |
AGCTCAATCAGTAGTTCCTG+TGG | 0.631311 | 2.1:-27598097 | MS.gene039215:CDS |
TCTGTGGAAGAAGAAAAGGC+AGG | 0.632238 | 2.1:-27597604 | MS.gene039215:CDS |
GGGGAACTGATTTGCCTCAG+AGG | 0.632430 | 2.1:-27598401 | MS.gene039215:CDS |
ACTGACCGAAGTCCAAAACT+AGG | 0.638929 | 2.1:-27598303 | MS.gene039215:CDS |
GCTAGGGTTCCTGAAAGGTG+TGG | 0.647120 | 2.1:-27597475 | MS.gene039215:CDS |
GGTGGAACATTTGAGACACC+TGG | 0.651752 | 2.1:-27597430 | MS.gene039215:CDS |
GACCGACGATCTCCAAGAGG+TGG | 0.659823 | 2.1:-27598279 | MS.gene039215:CDS |
ATGATGTGATGGATCTGAGT+CGG | 0.663820 | 2.1:+27598338 | None:intergenic |
TATCCATGATACCTTCCACC+AGG | 0.668548 | 2.1:+27597412 | None:intergenic |
GAATGAGAAGTTGAAATCTG+TGG | 0.677488 | 2.1:-27597620 | MS.gene039215:CDS |
CCTCAGAGGCAGTCACCAAG+AGG | 0.691940 | 2.1:-27598387 | MS.gene039215:CDS |
TAAGGGTGCAGACAGAACAA+TGG | 0.700140 | 2.1:-27597558 | MS.gene039215:CDS |
GGAGACCGACGATCTCCAAG+AGG | 0.717137 | 2.1:-27598282 | MS.gene039215:CDS |
GGAACATTTGAGACACCTGG+TGG | 0.752602 | 2.1:-27597427 | MS.gene039215:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAATTACATTTTAAAAGA+AGG | + | chr2.1:27597353-27597372 | None:intergenic | 10.0% |
!! | TGATATAAAAAACAAAATCA+TGG | - | chr2.1:27597465-27597484 | MS.gene039215:CDS | 15.0% |
!!! | ATTAATTGTTGTTTTCAAAT+AGG | - | chr2.1:27597567-27597586 | MS.gene039215:CDS | 15.0% |
!!! | TGTTTTTTATATCAAAATCA+GGG | + | chr2.1:27597459-27597478 | None:intergenic | 15.0% |
!!! | TTAATTGTTGTTTTCAAATA+GGG | - | chr2.1:27597568-27597587 | MS.gene039215:CDS | 15.0% |
!!! | TTGTTTTTTATATCAAAATC+AGG | + | chr2.1:27597460-27597479 | None:intergenic | 15.0% |
!! | AAAACATGATGTATTTGAAA+AGG | - | chr2.1:27598072-27598091 | MS.gene039215:CDS | 20.0% |
!! | ACAGTGTTTAAAAAAAATCA+CGG | + | chr2.1:27597526-27597545 | None:intergenic | 20.0% |
!!! | TAATTGTTGTTTTCAAATAG+GGG | - | chr2.1:27597569-27597588 | MS.gene039215:CDS | 20.0% |
! | ATTAATACAGCTTAAACGTT+TGG | + | chr2.1:27597553-27597572 | None:intergenic | 25.0% |
! | GAAGAAATTGAGTAAAGAAT+TGG | - | chr2.1:27598318-27598337 | MS.gene039215:CDS | 25.0% |
! | TTTAAAAAAAATCACGGTCT+CGG | + | chr2.1:27597520-27597539 | None:intergenic | 25.0% |
!! | TTAGAATGTTTGGTGATTTA+TGG | - | chr2.1:27598674-27598693 | MS.gene039215:intron | 25.0% |
!!! | AACATCTTGATGTTTTGTTT+CGG | + | chr2.1:27597978-27597997 | None:intergenic | 25.0% |
AAAGAATTGGAAGCTAGTAA+AGG | - | chr2.1:27598331-27598350 | MS.gene039215:CDS | 30.0% | |
AAGAATTGGAAGCTAGTAAA+GGG | - | chr2.1:27598332-27598351 | MS.gene039215:CDS | 30.0% | |
AAGTTTGGAGGAAAAAAAGA+AGG | - | chr2.1:27598186-27598205 | MS.gene039215:CDS | 30.0% | |
AATCAGAAATGAAGAAGCTA+AGG | - | chr2.1:27598413-27598432 | MS.gene039215:intron | 30.0% | |
ATCAGAAATGAAGAAGCTAA+GGG | - | chr2.1:27598414-27598433 | MS.gene039215:intron | 30.0% | |
GTATAACATGATTAGTAGCA+AGG | + | chr2.1:27597382-27597401 | None:intergenic | 30.0% | |
TAACATACATACCTTGATCT+TGG | + | chr2.1:27597300-27597319 | None:intergenic | 30.0% | |
TCTTCTGGTATTAGAATGTT+TGG | - | chr2.1:27598664-27598683 | MS.gene039215:intron | 30.0% | |
! | ATTCATTCAGTTGATTCTTC+AGG | + | chr2.1:27598243-27598262 | None:intergenic | 30.0% |
! | TTTTGATAGACTGTGAGTTT+AGG | - | chr2.1:27597415-27597434 | MS.gene039215:CDS | 30.0% |
!! | TTTGGTAGTGGAAAAAAGAA+GGG | - | chr2.1:27598640-27598659 | MS.gene039215:intron | 30.0% |
!!! | TTTTGGTAGTGGAAAAAAGA+AGG | - | chr2.1:27598639-27598658 | MS.gene039215:intron | 30.0% |
AAAGGAAGAAGGAATGACAA+TGG | - | chr2.1:27598291-27598310 | MS.gene039215:CDS | 35.0% | |
ACAGTAAATCAGAAGAAGCT+CGG | - | chr2.1:27597746-27597765 | MS.gene039215:CDS | 35.0% | |
AGCTGAAAAGAAAAAAGCTG+AGG | - | chr2.1:27597853-27597872 | MS.gene039215:CDS | 35.0% | |
AGTAAAAGCTGCTGAAACAA+AGG | - | chr2.1:27598273-27598292 | MS.gene039215:CDS | 35.0% | |
CAACTTCTCATTCAACTTCT+CGG | + | chr2.1:27598362-27598381 | None:intergenic | 35.0% | |
CTTCTTCTGATTTACTGTCT+CGG | + | chr2.1:27597744-27597763 | None:intergenic | 35.0% | |
GAAATCTGTGGAAGAAGAAA+AGG | - | chr2.1:27598381-27598400 | MS.gene039215:CDS | 35.0% | |
GAATGAGAAGTTGAAATCTG+TGG | - | chr2.1:27598369-27598388 | MS.gene039215:CDS | 35.0% | |
GGTGATTTATGGAAGAAGAA+AGG | - | chr2.1:27598685-27598704 | MS.gene039215:intron | 35.0% | |
TGAAGTTCCTATCGAAAAGT+TGG | - | chr2.1:27598036-27598055 | MS.gene039215:CDS | 35.0% | |
! | GTCTCTTCTTGATTTTCATC+AGG | + | chr2.1:27598007-27598026 | None:intergenic | 35.0% |
! | TCAATTGCCAACTTTTCGAT+AGG | + | chr2.1:27598046-27598065 | None:intergenic | 35.0% |
! | TCTTGAAACTTTTCTACCAC+AGG | + | chr2.1:27597911-27597930 | None:intergenic | 35.0% |
AGCGTCGTTGAAATCAAGTT+TGG | - | chr2.1:27598171-27598190 | MS.gene039215:CDS | 40.0% | |
ATATGTAGGTTCTCCTGGTA+TGG | - | chr2.1:27598597-27598616 | MS.gene039215:intron | 40.0% | |
CAGTAAATCAGAAGAAGCTC+GGG | - | chr2.1:27597747-27597766 | MS.gene039215:CDS | 40.0% | |
GGAAAAAAGAAGGGTTCTTC+TGG | - | chr2.1:27598649-27598668 | MS.gene039215:intron | 40.0% | |
GGAGGAAAAAAAGAAGGAAC+TGG | - | chr2.1:27598192-27598211 | MS.gene039215:CDS | 40.0% | |
GGTTCAATGGATAAGCACTT+TGG | - | chr2.1:27598535-27598554 | MS.gene039215:intron | 40.0% | |
GTCGTTGAAATCAAGTTTGG+AGG | - | chr2.1:27598174-27598193 | MS.gene039215:CDS | 40.0% | |
TCAATGGATAAGCACTTTGG+TGG | - | chr2.1:27598538-27598557 | MS.gene039215:intron | 40.0% | |
!! | ATGATGTGATGGATCTGAGT+CGG | + | chr2.1:27597654-27597673 | None:intergenic | 40.0% |
!! | ATGGTTGATGATCTGGATGA+TGG | - | chr2.1:27598616-27598635 | MS.gene039215:intron | 40.0% |
!! | GATGATCTGGATGATGGTTT+TGG | - | chr2.1:27598622-27598641 | MS.gene039215:intron | 40.0% |
!! | GGAAGGTATCATGGATATGT+AGG | - | chr2.1:27598583-27598602 | MS.gene039215:intron | 40.0% |
ACTGACCGAAGTCCAAAACT+AGG | - | chr2.1:27597686-27597705 | MS.gene039215:CDS | 45.0% | |
AGCTCAATCAGTAGTTCCTG+TGG | - | chr2.1:27597892-27597911 | MS.gene039215:CDS | 45.0% | |
ATGGATAAGCACTTTGGTGG+TGG | - | chr2.1:27598541-27598560 | MS.gene039215:intron | 45.0% | |
CATGGATATGTAGGTTCTCC+TGG | - | chr2.1:27598592-27598611 | MS.gene039215:intron | 45.0% | |
CTGTGGAAGAAGAAAAGGCA+GGG | - | chr2.1:27598386-27598405 | MS.gene039215:CDS | 45.0% | |
GCTGCTGAAACAAAGGAAGA+AGG | - | chr2.1:27598280-27598299 | MS.gene039215:CDS | 45.0% | |
TATCCATGATACCTTCCACC+AGG | + | chr2.1:27598580-27598599 | None:intergenic | 45.0% | |
TCCAGATCATCAACCATACC+AGG | + | chr2.1:27598613-27598632 | None:intergenic | 45.0% | |
TCCATCACATCATCATCGAC+CGG | - | chr2.1:27597661-27597680 | MS.gene039215:CDS | 45.0% | |
TCCATTGAACCACACCTTTC+AGG | + | chr2.1:27598526-27598545 | None:intergenic | 45.0% | |
TCTGTGGAAGAAGAAAAGGC+AGG | - | chr2.1:27598385-27598404 | MS.gene039215:CDS | 45.0% | |
TGTGAGTTTAGGCAGAATCG+CGG | - | chr2.1:27597426-27597445 | MS.gene039215:CDS | 45.0% | |
TTTGGACTTCGGTCAGTAAC+CGG | + | chr2.1:27597683-27597702 | None:intergenic | 45.0% | |
! | GATGTTGCTGGTTGAGTTTG+AGG | + | chr2.1:27598100-27598119 | None:intergenic | 45.0% |
! | GCAGATTTGGAATCACAGCT+TGG | - | chr2.1:27597779-27597798 | MS.gene039215:CDS | 45.0% |
! | TAAGGGTGCAGACAGAACAA+TGG | - | chr2.1:27598431-27598450 | MS.gene039215:intron | 45.0% |
! | TCACGGTCTCGGATTTTGTT+AGG | + | chr2.1:27597509-27597528 | None:intergenic | 45.0% |
! | TCCTGAAAGGTGTGGTTCAA+TGG | - | chr2.1:27598522-27598541 | MS.gene039215:intron | 45.0% |
! | TGATATGAGTGCTGCTGCTA+GGG | - | chr2.1:27598498-27598517 | MS.gene039215:intron | 45.0% |
! | TTGATATGAGTGCTGCTGCT+AGG | - | chr2.1:27598497-27598516 | MS.gene039215:intron | 45.0% |
!! | CAAGAGGTACTCATCAGCTT+CGG | - | chr2.1:27597618-27597637 | MS.gene039215:CDS | 45.0% |
!! | TCCTGGTATGGTTGATGATC+TGG | - | chr2.1:27598609-27598628 | MS.gene039215:intron | 45.0% |
!!! | CTGGATGATGGTTTTGGTAG+TGG | - | chr2.1:27598628-27598647 | MS.gene039215:intron | 45.0% |
!!! | GGTCTCCTAGTTTTGGACTT+CGG | + | chr2.1:27597694-27597713 | None:intergenic | 45.0% |
AGTGTCAGCTCCTCCACAAA+AGG | + | chr2.1:27598136-27598155 | None:intergenic | 50.0% | |
CGAAGCTGATGAGTACCTCT+TGG | + | chr2.1:27597620-27597639 | None:intergenic | 50.0% | |
TACCACCTCTTGGAGATCGT+CGG | + | chr2.1:27597715-27597734 | None:intergenic | 50.0% | |
TCCTCCACAAAAGGCTTCTC+TGG | + | chr2.1:27598127-27598146 | None:intergenic | 50.0% | |
TCGGATTGAGTACCACCTCT+TGG | + | chr2.1:27597725-27597744 | None:intergenic | 50.0% | |
! | ACCGGTCGATGATGATGTGA+TGG | + | chr2.1:27597665-27597684 | None:intergenic | 50.0% |
! | AGAGCCAGAGAAGCCTTTTG+TGG | - | chr2.1:27598120-27598139 | MS.gene039215:CDS | 50.0% |
! | CATTTGAGACACCTGGTGGA+AGG | - | chr2.1:27598566-27598585 | MS.gene039215:intron | 50.0% |
! | GATCGTCGGTCTCCTAGTTT+TGG | + | chr2.1:27597701-27597720 | None:intergenic | 50.0% |
! | GGAACATTTGAGACACCTGG+TGG | - | chr2.1:27598562-27598581 | MS.gene039215:intron | 50.0% |
! | GGTGGAACATTTGAGACACC+TGG | - | chr2.1:27598559-27598578 | MS.gene039215:intron | 50.0% |
!! | ACACCTGGTGGAAGGTATCA+TGG | - | chr2.1:27598574-27598593 | MS.gene039215:intron | 50.0% |
!! | TTCTCTGGCTCTGATGTTGC+TGG | + | chr2.1:27598112-27598131 | None:intergenic | 50.0% |
CGGGACTCGCATTGCAGATT+TGG | - | chr2.1:27597766-27597785 | MS.gene039215:CDS | 55.0% | |
CTGCTGCTAGGGTTCCTGAA+AGG | - | chr2.1:27598509-27598528 | MS.gene039215:intron | 55.0% | |
GCTAGGGTTCCTGAAAGGTG+TGG | - | chr2.1:27598514-27598533 | MS.gene039215:intron | 55.0% | |
! | GCCAGAGAAGCCTTTTGTGG+AGG | - | chr2.1:27598123-27598142 | MS.gene039215:CDS | 55.0% |
!! | GGGGAACTGATTTGCCTCAG+AGG | - | chr2.1:27597588-27597607 | MS.gene039215:CDS | 55.0% |
CCTCAGAGGCAGTCACCAAG+AGG | - | chr2.1:27597602-27597621 | MS.gene039215:CDS | 60.0% | |
GACCGACGATCTCCAAGAGG+TGG | - | chr2.1:27597710-27597729 | MS.gene039215:CDS | 60.0% | |
GGAGACCGACGATCTCCAAG+AGG | - | chr2.1:27597707-27597726 | MS.gene039215:CDS | 60.0% | |
! | CCTCTTGGTGACTGCCTCTG+AGG | + | chr2.1:27597605-27597624 | None:intergenic | 60.0% |
GCAGCTGCAGTGCTTGCAGG+AGG | - | chr2.1:27598472-27598491 | MS.gene039215:intron | 65.0% | |
GCTGCAGCTGCAGTGCTTGC+AGG | - | chr2.1:27598469-27598488 | MS.gene039215:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 27597294 | 27598717 | 27597294 | ID=MS.gene039215 |
chr2.1 | mRNA | 27597294 | 27598717 | 27597294 | ID=MS.gene039215.t1;Parent=MS.gene039215 |
chr2.1 | exon | 27598704 | 27598717 | 27598704 | ID=MS.gene039215.t1.exon1;Parent=MS.gene039215.t1 |
chr2.1 | CDS | 27598704 | 27598717 | 27598704 | ID=cds.MS.gene039215.t1;Parent=MS.gene039215.t1 |
chr2.1 | exon | 27597294 | 27598422 | 27597294 | ID=MS.gene039215.t1.exon2;Parent=MS.gene039215.t1 |
chr2.1 | CDS | 27597294 | 27598422 | 27597294 | ID=cds.MS.gene039215.t1;Parent=MS.gene039215.t1 |
Gene Sequence |
Protein sequence |