Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013441.t1 | XP_013461492.1 | 97.6 | 369 | 9 | 0 | 1 | 369 | 1 | 369 | 5.90E-180 | 640.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013441.t1 | Q9ZVH8 | 47.8 | 395 | 157 | 7 | 6 | 369 | 2 | 378 | 9.5e-86 | 318.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013441.t1 | A0A072V117 | 97.6 | 369 | 9 | 0 | 1 | 369 | 1 | 369 | 4.3e-180 | 640.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene013441.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025458 | MS.gene013441 | PPI |
| MS.gene27287 | MS.gene013441 | PPI |
| MS.gene072221 | MS.gene013441 | PPI |
| MS.gene063673 | MS.gene013441 | PPI |
| MS.gene24205 | MS.gene013441 | PPI |
| MS.gene67503 | MS.gene013441 | PPI |
| MS.gene71147 | MS.gene013441 | PPI |
| MS.gene072220 | MS.gene013441 | PPI |
| MS.gene013441 | MS.gene56011 | PPI |
| MS.gene00182 | MS.gene013441 | PPI |
| MS.gene013441 | MS.gene51225 | PPI |
| MS.gene34585 | MS.gene013441 | PPI |
| MS.gene011065 | MS.gene013441 | PPI |
| MS.gene013441 | MS.gene65289 | PPI |
| MS.gene013441 | MS.gene36746 | PPI |
| MS.gene36633 | MS.gene013441 | PPI |
| MS.gene058216 | MS.gene013441 | PPI |
| MS.gene35554 | MS.gene013441 | PPI |
| MS.gene013441 | MS.gene27025 | PPI |
| MS.gene013441 | MS.gene64820 | PPI |
| MS.gene013441 | MS.gene67685 | PPI |
| MS.gene013441 | MS.gene026765 | PPI |
| MS.gene013441 | MS.gene90747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013441.t1 | MTR_3g093800 | 99.187 | 369 | 3 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013441.t1 | AT2G38560 | 52.972 | 387 | 149 | 11 | 6 | 369 | 2 | 378 | 1.26e-118 | 348 |
| MS.gene013441.t1 | AT2G42725 | 48.031 | 127 | 65 | 1 | 189 | 314 | 104 | 230 | 7.74e-32 | 120 |
| MS.gene013441.t1 | AT4G18720 | 53.153 | 111 | 51 | 1 | 189 | 298 | 105 | 215 | 1.76e-29 | 115 |
| MS.gene013441.t1 | AT5G42325 | 40.625 | 128 | 58 | 3 | 189 | 314 | 104 | 215 | 2.96e-19 | 86.3 |
Find 88 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAGTTTGCATTTGGTAAT+AGG | 0.248412 | 3.4:+85514709 | None:intergenic |
| GTCCTTAATGTTTAATCTTA+AGG | 0.250681 | 3.4:-85514948 | MS.gene013441:CDS |
| ATTCAGCGCGAGACAAAATA+AGG | 0.257557 | 3.4:-85515132 | MS.gene013441:CDS |
| ATCCTTAAGATTAAACATTA+AGG | 0.282366 | 3.4:+85514946 | None:intergenic |
| ATCAGAAGAACCCTGATTTC+CGG | 0.285749 | 3.4:-85514925 | MS.gene013441:CDS |
| AGGACCTATACTTGACCTTT+TGG | 0.308451 | 3.4:+85514966 | None:intergenic |
| AGTCCGTATTATTTGAAAAC+TGG | 0.312826 | 3.4:-85515006 | MS.gene013441:CDS |
| CTGTTGACTTAATTGCGATA+TGG | 0.314443 | 3.4:-85515498 | MS.gene013441:CDS |
| GCCAAGGTGGAGAAAGTTAA+TGG | 0.315639 | 3.4:-85515337 | MS.gene013441:CDS |
| AATTGATCAGTAGTAGCTTT+TGG | 0.339749 | 3.4:+85514764 | None:intergenic |
| GAGGCAACGGGTTTCTTCGC+TGG | 0.347716 | 3.4:+85517201 | None:intergenic |
| ACTGTCACTGCCACACGAAT+AGG | 0.349730 | 3.4:+85515031 | None:intergenic |
| CAGCACTGCGAGTTTGCATT+TGG | 0.373188 | 3.4:+85514702 | None:intergenic |
| AGCATCCCAGGGAGAACATT+CGG | 0.381324 | 3.4:-85515528 | MS.gene013441:CDS |
| CTCCTTCGCTTTGATGTTCG+AGG | 0.381420 | 3.4:+85515237 | None:intergenic |
| CGTCATGAGCTCAGCAGAAA+TGG | 0.387279 | 3.4:-85514861 | MS.gene013441:CDS |
| GAACGGGGCCTCTGATTCTA+AGG | 0.389336 | 3.4:-85515440 | MS.gene013441:CDS |
| ATCATAGTCTTCAGCTTTGG+TGG | 0.390447 | 3.4:+85515166 | None:intergenic |
| CTTTGGTGGAGCAGCAGTGC+TGG | 0.400922 | 3.4:+85515180 | None:intergenic |
| GAAAACTGGGGTCCTTCAAA+TGG | 0.424609 | 3.4:-85514992 | MS.gene013441:CDS |
| TTGATCATAGTCTTCAGCTT+TGG | 0.429713 | 3.4:+85515163 | None:intergenic |
| TACTGTTGAGCCACAGCGGC+TGG | 0.438165 | 3.4:-85514885 | MS.gene013441:CDS |
| TTCAAGCGCATCGAGGCAAC+GGG | 0.440343 | 3.4:+85517189 | None:intergenic |
| GCATCCCAGGGAGAACATTC+GGG | 0.444394 | 3.4:-85515527 | MS.gene013441:CDS |
| CTCATGACGGCCAGCCGCTG+TGG | 0.450612 | 3.4:+85514875 | None:intergenic |
| CTGTCACTGCCACACGAATA+GGG | 0.453244 | 3.4:+85515032 | None:intergenic |
| AGGCAACGGGTTTCTTCGCT+GGG | 0.460026 | 3.4:+85517202 | None:intergenic |
| TCCTTCAAATGGAGCCCAAA+AGG | 0.467781 | 3.4:-85514981 | MS.gene013441:CDS |
| AAACTCTCACCAAGCATCCC+AGG | 0.468100 | 3.4:-85515540 | MS.gene013441:CDS |
| GGTTCATCAAAGCTGAGCTC+TGG | 0.479292 | 3.4:-85515310 | MS.gene013441:CDS |
| TTCTTCGCTGGGACTATCAT+CGG | 0.481323 | 3.4:+85517213 | None:intergenic |
| AATGTTCTCCCTGGGATGCT+TGG | 0.486291 | 3.4:+85515531 | None:intergenic |
| CAAGTGACATAGGTTGTCAT+AGG | 0.486857 | 3.4:+85514674 | None:intergenic |
| CCCATTAACTTTCTCCACCT+TGG | 0.490756 | 3.4:+85515336 | None:intergenic |
| CCTTTCTCAACCTTCACTGA+AGG | 0.497037 | 3.4:+85515367 | None:intergenic |
| GTCCGTATTATTTGAAAACT+GGG | 0.498242 | 3.4:-85515005 | MS.gene013441:CDS |
| GTTCAAGCGCATCGAGGCAA+CGG | 0.502578 | 3.4:+85517188 | None:intergenic |
| TTCCGGAGAAAAGTTCTGCT+TGG | 0.505519 | 3.4:-85514908 | MS.gene013441:CDS |
| CCAAGGTGGAGAAAGTTAAT+GGG | 0.509185 | 3.4:-85515336 | MS.gene013441:CDS |
| GGGACTATCATCGGTGGAGG+TGG | 0.510748 | 3.4:+85517222 | None:intergenic |
| ATGGAAAGACGTCATTATCA+AGG | 0.517700 | 3.4:-85515479 | MS.gene013441:CDS |
| AAAAGCCCGAATGTTCTCCC+TGG | 0.523075 | 3.4:+85515522 | None:intergenic |
| GTGGTTGGGTTCGATGGAGA+AGG | 0.527613 | 3.4:-85517302 | None:intergenic |
| GCAGTTAACACAAGTGACAT+AGG | 0.530050 | 3.4:+85514664 | None:intergenic |
| CTAAGGTTGAGTCAACGAAT+GGG | 0.530166 | 3.4:-85515423 | MS.gene013441:CDS |
| CCTTCAGTGAAGGTTGAGAA+AGG | 0.536034 | 3.4:-85515367 | MS.gene013441:CDS |
| AGAGGCAGATGAAGATATGA+TGG | 0.547455 | 3.4:-85515074 | MS.gene013441:CDS |
| GTGGAGAAAGTTAATGGGAA+TGG | 0.557971 | 3.4:-85515331 | MS.gene013441:CDS |
| TCTCCGAGATGCTTTAGCTA+AGG | 0.559780 | 3.4:-85515104 | MS.gene013441:CDS |
| TTCAGCGCGAGACAAAATAA+GGG | 0.562584 | 3.4:-85515131 | MS.gene013441:CDS |
| GCTGAGCTCTGGAAATGTAA+AGG | 0.564072 | 3.4:-85515299 | MS.gene013441:CDS |
| GCAAAAGAGTCCTTCAGTGA+AGG | 0.568044 | 3.4:-85515377 | MS.gene013441:CDS |
| TCTAAGGTTGAGTCAACGAA+TGG | 0.570762 | 3.4:-85515424 | MS.gene013441:CDS |
| AGTTTGCATTTGGTAATAGG+TGG | 0.578245 | 3.4:+85514712 | None:intergenic |
| AAAGCCCGAATGTTCTCCCT+GGG | 0.578463 | 3.4:+85515523 | None:intergenic |
| CTGATCAATTTAAGTGTGGT+CGG | 0.587454 | 3.4:-85514751 | MS.gene013441:CDS |
| TATTCGTGTGGCAGTGACAG+TGG | 0.587816 | 3.4:-85515029 | MS.gene013441:CDS |
| GCTTTGTTCGACTGTGAGCG+TGG | 0.588912 | 3.4:-85514794 | MS.gene013441:CDS |
| CAGAAATGGCTAGTGAGCAA+AGG | 0.590372 | 3.4:-85514847 | MS.gene013441:CDS |
| AGACCTTAGCTAAAGCATCT+CGG | 0.591289 | 3.4:+85515101 | None:intergenic |
| AATGGGGAGAGAGCTAAAGC+TGG | 0.591506 | 3.4:-85515406 | MS.gene013441:CDS |
| GTGTTAACTGCAACAACCGT+TGG | 0.591905 | 3.4:-85514652 | MS.gene013441:CDS |
| AAATGTAAAGGCACAAAATG+TGG | 0.596450 | 3.4:-85515287 | MS.gene013441:CDS |
| TTCGCTGGGACTATCATCGG+TGG | 0.598548 | 3.4:+85517216 | None:intergenic |
| GAGCCCAAAAGGTCAAGTAT+AGG | 0.599758 | 3.4:-85514970 | MS.gene013441:CDS |
| AACTCTCACCAAGCATCCCA+GGG | 0.605206 | 3.4:-85515539 | MS.gene013441:CDS |
| CAAAATTCTCGTCAATACCC+AGG | 0.608507 | 3.4:-85517140 | MS.gene013441:intron |
| GAAAGGAGAAAGTGCCAAGG+TGG | 0.613295 | 3.4:-85515350 | MS.gene013441:CDS |
| GCTGGGACTATCATCGGTGG+AGG | 0.613512 | 3.4:+85517219 | None:intergenic |
| ATGGGGAGAGAGCTAAAGCT+GGG | 0.620446 | 3.4:-85515405 | MS.gene013441:CDS |
| AGTGTGGTCGGTGTGGACAA+AGG | 0.621667 | 3.4:-85514739 | MS.gene013441:CDS |
| TTTAGCTAAGGTCTTTGAAG+AGG | 0.626494 | 3.4:-85515092 | MS.gene013441:CDS |
| TGACTCAACCTTAGAATCAG+AGG | 0.626857 | 3.4:+85515432 | None:intergenic |
| CAATTTAAGTGTGGTCGGTG+TGG | 0.627337 | 3.4:-85514746 | MS.gene013441:CDS |
| TACCTCGAACATCAAAGCGA+AGG | 0.634021 | 3.4:-85515239 | MS.gene013441:CDS |
| CTCGAACATCAAAGCGAAGG+AGG | 0.641252 | 3.4:-85515236 | MS.gene013441:CDS |
| ACTACTGATCAATTTAAGTG+TGG | 0.648979 | 3.4:-85514755 | MS.gene013441:CDS |
| GTACGAAGCGGCGAAGAAAG+CGG | 0.650598 | 3.4:-85517254 | MS.gene013441:CDS |
| TGAGAAAGGAGAAAGTGCCA+AGG | 0.657225 | 3.4:-85515353 | MS.gene013441:CDS |
| AGTACTAACAAAACTTCCAA+CGG | 0.659265 | 3.4:+85514636 | None:intergenic |
| TAAGGTTGAGTCAACGAATG+GGG | 0.661593 | 3.4:-85515422 | MS.gene013441:CDS |
| CATTTCTGCTGAGCTCATGA+CGG | 0.685355 | 3.4:+85514862 | None:intergenic |
| TCCGTATTATTTGAAAACTG+GGG | 0.694223 | 3.4:-85515004 | MS.gene013441:CDS |
| CGAAGCGGCGAAGAAAGCGG+CGG | 0.698510 | 3.4:-85517251 | MS.gene013441:CDS |
| GTTGGTCGAATTGTACGAAG+CGG | 0.702403 | 3.4:-85517266 | MS.gene013441:CDS |
| TGCATGTGACCCTATTCGTG+TGG | 0.704457 | 3.4:-85515041 | MS.gene013441:CDS |
| TGAGCTGTTCAAGCGCATCG+AGG | 0.741948 | 3.4:+85517182 | None:intergenic |
| TTGGTACTGTTGAGCCACAG+CGG | 0.784321 | 3.4:-85514889 | MS.gene013441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTGCTATCAAATA+TGG | + | chr3.4:85515794-85515813 | None:intergenic | 15.0% |
| !! | AAATCAGAAAAAACTATAAT+GGG | + | chr3.4:85515640-85515659 | None:intergenic | 15.0% |
| !! | GAGTTATAAATTTGTAAATT+TGG | - | chr3.4:85515036-85515055 | MS.gene013441:CDS | 15.0% |
| !! | AAAACTAGTTCATAGTTTAT+TGG | - | chr3.4:85515843-85515862 | MS.gene013441:intron | 20.0% |
| !! | AAAAGAAATAGAGATAGTTA+AGG | - | chr3.4:85516242-85516261 | MS.gene013441:intron | 20.0% |
| !! | AAACAAGTAAAAATAAGAAC+GGG | - | chr3.4:85516473-85516492 | MS.gene013441:intron | 20.0% |
| !! | AAAGAAATAGAGATAGTTAA+GGG | - | chr3.4:85516243-85516262 | MS.gene013441:intron | 20.0% |
| !! | AACAAACTATTTATTAAGCA+AGG | + | chr3.4:85516014-85516033 | None:intergenic | 20.0% |
| !! | ATAGAAAAAACTGTAGTATT+TGG | - | chr3.4:85516210-85516229 | MS.gene013441:intron | 20.0% |
| !! | ATCCTTAAGATTAAACATTA+AGG | + | chr3.4:85516986-85517005 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGAAATATCTGT+AGG | + | chr3.4:85515756-85515775 | None:intergenic | 20.0% |
| !! | CAAATCAGAAAAAACTATAA+TGG | + | chr3.4:85515641-85515660 | None:intergenic | 20.0% |
| !! | GAAACAAGTAAAAATAAGAA+CGG | - | chr3.4:85516472-85516491 | MS.gene013441:intron | 20.0% |
| !! | GAATAGAAAAATAATAACCT+GGG | + | chr3.4:85514809-85514828 | None:intergenic | 20.0% |
| !! | TGAATAGAAAAATAATAACC+TGG | + | chr3.4:85514810-85514829 | None:intergenic | 20.0% |
| !! | TTTGTTTAGAAATATCTGTA+GGG | + | chr3.4:85515755-85515774 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTTGGTTAAATT+GGG | - | chr3.4:85515083-85515102 | MS.gene013441:CDS | 20.0% |
| !!! | TCAAATCTTTACTTTTTTCA+TGG | - | chr3.4:85516281-85516300 | MS.gene013441:intron | 20.0% |
| ! | AACAAGTAAAAATAAGAACG+GGG | - | chr3.4:85516474-85516493 | MS.gene013441:intron | 25.0% |
| ! | CAACTGGCTAATTTAAATTA+CGG | + | chr3.4:85515232-85515251 | None:intergenic | 25.0% |
| ! | GAAAATCAACTCTTAATGTT+TGG | - | chr3.4:85515671-85515690 | MS.gene013441:intron | 25.0% |
| ! | GAAAATCCAAAACATATACT+CGG | + | chr3.4:85515292-85515311 | None:intergenic | 25.0% |
| ! | GTCCTTAATGTTTAATCTTA+AGG | - | chr3.4:85516981-85517000 | MS.gene013441:intron | 25.0% |
| ! | TCTATTCACATTGCAAATTT+GGG | - | chr3.4:85514822-85514841 | MS.gene013441:CDS | 25.0% |
| ! | TTCTATTCACATTGCAAATT+TGG | - | chr3.4:85514821-85514840 | MS.gene013441:CDS | 25.0% |
| !! | ATTTTCTGATGTAATCTTTC+AGG | - | chr3.4:85516351-85516370 | MS.gene013441:intron | 25.0% |
| !! | GTAAAGATTTGAGATCAATT+TGG | + | chr3.4:85516273-85516292 | None:intergenic | 25.0% |
| !!! | AACTATGAACTAGTTTTTCA+CGG | + | chr3.4:85515840-85515859 | None:intergenic | 25.0% |
| !!! | ACAGTTTTTTCTATCTAGTT+TGG | + | chr3.4:85516204-85516223 | None:intergenic | 25.0% |
| !!! | GGTTTTGTTTTTGGTTAAAT+TGG | - | chr3.4:85515082-85515101 | MS.gene013441:CDS | 25.0% |
| !!! | TCGATTTTAGGTTTTGTTTT+TGG | - | chr3.4:85515073-85515092 | MS.gene013441:CDS | 25.0% |
| !!! | TTTTTAATTCTTTGATGACG+TGG | - | chr3.4:85515422-85515441 | MS.gene013441:CDS | 25.0% |
| AACCACAAAAACCAAAATAG+CGG | + | chr3.4:85515902-85515921 | None:intergenic | 30.0% | |
| AATGAAACCAATCCTAACTT+TGG | + | chr3.4:85515575-85515594 | None:intergenic | 30.0% | |
| AATTAAATTAGCACATTGCG+TGG | - | chr3.4:85515129-85515148 | MS.gene013441:CDS | 30.0% | |
| ACCACAAATAACATTATCCT+TGG | + | chr3.4:85515524-85515543 | None:intergenic | 30.0% | |
| ACTACTGATCAATTTAAGTG+TGG | - | chr3.4:85517174-85517193 | MS.gene013441:CDS | 30.0% | |
| AGTCCGTATTATTTGAAAAC+TGG | - | chr3.4:85516923-85516942 | MS.gene013441:intron | 30.0% | |
| ATGAAAATCGTAACAAGTAC+AGG | + | chr3.4:85516312-85516331 | None:intergenic | 30.0% | |
| ATTTAAATTAGCCAGTTGCA+TGG | - | chr3.4:85515234-85515253 | MS.gene013441:CDS | 30.0% | |
| GAACTTATTGAAACTGGAAT+GGG | - | chr3.4:85515693-85515712 | MS.gene013441:intron | 30.0% | |
| GTCCGTATTATTTGAAAACT+GGG | - | chr3.4:85516924-85516943 | MS.gene013441:intron | 30.0% | |
| TATCATTGTTGTCGTTATCT+TGG | - | chr3.4:85515489-85515508 | MS.gene013441:CDS | 30.0% | |
| TATCTTGGAATTTATGACCA+AGG | - | chr3.4:85515504-85515523 | MS.gene013441:CDS | 30.0% | |
| TATTGCTATCAAATATGGAG+AGG | + | chr3.4:85515789-85515808 | None:intergenic | 30.0% | |
| TCCGTATTATTTGAAAACTG+GGG | - | chr3.4:85516925-85516944 | MS.gene013441:intron | 30.0% | |
| TTAACATCAACAGAAACTCA+GGG | + | chr3.4:85515110-85515129 | None:intergenic | 30.0% | |
| TTCGCATGTTATAGTTGTTT+GGG | - | chr3.4:85514919-85514938 | MS.gene013441:CDS | 30.0% | |
| TTTAACATCAACAGAAACTC+AGG | + | chr3.4:85515111-85515130 | None:intergenic | 30.0% | |
| TTTCGCATGTTATAGTTGTT+TGG | - | chr3.4:85514918-85514937 | MS.gene013441:CDS | 30.0% | |
| ! | AAATGTAAAGGCACAAAATG+TGG | - | chr3.4:85516642-85516661 | MS.gene013441:intron | 30.0% |
| ! | AACTGTAGTATTTGGAATTC+AGG | - | chr3.4:85516218-85516237 | MS.gene013441:intron | 30.0% |
| ! | AATTGATCAGTAGTAGCTTT+TGG | + | chr3.4:85517168-85517187 | None:intergenic | 30.0% |
| ! | ACCAAGGATAATGTTATTTG+TGG | - | chr3.4:85515520-85515539 | MS.gene013441:CDS | 30.0% |
| ! | ACCCCAGTTTTCAAATAATA+CGG | + | chr3.4:85516929-85516948 | None:intergenic | 30.0% |
| ! | ACGAGAATTTTGTAATTGAC+CGG | + | chr3.4:85514781-85514800 | None:intergenic | 30.0% |
| ! | ACTGTAGTATTTGGAATTCA+GGG | - | chr3.4:85516219-85516238 | MS.gene013441:intron | 30.0% |
| ! | ATAGTTTATTGGTCTGATTG+TGG | - | chr3.4:85515854-85515873 | MS.gene013441:intron | 30.0% |
| ! | ATTTTCGAAAAGATGGATAC+GGG | - | chr3.4:85515306-85515325 | MS.gene013441:CDS | 30.0% |
| ! | GAAAAAACTATAATGGGATC+TGG | + | chr3.4:85515634-85515653 | None:intergenic | 30.0% |
| ! | GATTTTCGAAAAGATGGATA+CGG | - | chr3.4:85515305-85515324 | MS.gene013441:CDS | 30.0% |
| ! | TCGGAGTTTTCAAAAGAATA+GGG | - | chr3.4:85515361-85515380 | MS.gene013441:CDS | 30.0% |
| ! | TGTTTGGAACTTATTGAAAC+TGG | - | chr3.4:85515687-85515706 | MS.gene013441:intron | 30.0% |
| !! | GTTTTGGATTTTCGAAAAGA+TGG | - | chr3.4:85515299-85515318 | MS.gene013441:CDS | 30.0% |
| !! | TACCAATTTATCTCTGAAAC+TGG | + | chr3.4:85516144-85516163 | None:intergenic | 30.0% |
| !!! | ACTATGAACTAGTTTTTCAC+GGG | + | chr3.4:85515839-85515858 | None:intergenic | 30.0% |
| !!! | ATAGGTTTTGGATTTTGCAA+AGG | - | chr3.4:85515188-85515207 | MS.gene013441:CDS | 30.0% |
| AAATATGGAGAGGATACGTT+AGG | + | chr3.4:85515779-85515798 | None:intergenic | 35.0% | |
| AAATGACAGCTAGTTGTGTT+TGG | - | chr3.4:85515544-85515563 | MS.gene013441:CDS | 35.0% | |
| ACCAAAATAGCGGTATAATC+TGG | + | chr3.4:85515892-85515911 | None:intergenic | 35.0% | |
| ATGGAAAGACGTCATTATCA+AGG | - | chr3.4:85516450-85516469 | MS.gene013441:intron | 35.0% | |
| CAAAATCCAAAACCTATACC+CGG | + | chr3.4:85515185-85515204 | None:intergenic | 35.0% | |
| CACATTGCGTGGATATATAT+GGG | - | chr3.4:85515140-85515159 | MS.gene013441:CDS | 35.0% | |
| CTGATCAATTTAAGTGTGGT+CGG | - | chr3.4:85517178-85517197 | MS.gene013441:CDS | 35.0% | |
| GAAGGAAAAAGAGAAAGAGT+TGG | - | chr3.4:85514645-85514664 | MS.gene013441:CDS | 35.0% | |
| GATTCAGCAACAAGAAATTG+TGG | + | chr3.4:85515984-85516003 | None:intergenic | 35.0% | |
| GGAACTTATTGAAACTGGAA+TGG | - | chr3.4:85515692-85515711 | MS.gene013441:intron | 35.0% | |
| GTGAGTATGCTTGTAAGAAA+AGG | + | chr3.4:85515957-85515976 | None:intergenic | 35.0% | |
| TGCCAGTTTCAGAGATAAAT+TGG | - | chr3.4:85516139-85516158 | MS.gene013441:intron | 35.0% | |
| TGTTTGGATTCACCAAAGTT+AGG | - | chr3.4:85515560-85515579 | MS.gene013441:intron | 35.0% | |
| TTCTGATGTAATCTTTCAGG+TGG | - | chr3.4:85516354-85516373 | MS.gene013441:intron | 35.0% | |
| TTGATCATAGTCTTCAGCTT+TGG | + | chr3.4:85516769-85516788 | None:intergenic | 35.0% | |
| ! | AGTTTGCATTTGGTAATAGG+TGG | + | chr3.4:85517220-85517239 | None:intergenic | 35.0% |
| ! | ATTTTCTTTGCCACAGATAC+TGG | + | chr3.4:85516724-85516743 | None:intergenic | 35.0% |
| ! | ATTTTGCAAAGGATGGATAC+GGG | - | chr3.4:85515199-85515218 | MS.gene013441:CDS | 35.0% |
| ! | GATTTTGCAAAGGATGGATA+CGG | - | chr3.4:85515198-85515217 | MS.gene013441:CDS | 35.0% |
| ! | GTCGGAGTTTTCAAAAGAAT+AGG | - | chr3.4:85515360-85515379 | MS.gene013441:CDS | 35.0% |
| ! | GTTGTTTGGGTTCAATTGAA+TGG | - | chr3.4:85514932-85514951 | MS.gene013441:CDS | 35.0% |
| ! | TATTGAACCGTAATTGACTC+CGG | - | chr3.4:85515163-85515182 | MS.gene013441:CDS | 35.0% |
| ! | TCTGATGTAATCTTTCAGGT+GGG | - | chr3.4:85516355-85516374 | MS.gene013441:intron | 35.0% |
| ! | TGAACAGCTCAAGAATTTTC+CGG | - | chr3.4:85514759-85514778 | MS.gene013441:CDS | 35.0% |
| ! | TTGAGTCCGAGTATATGTTT+TGG | - | chr3.4:85515283-85515302 | MS.gene013441:CDS | 35.0% |
| ! | TTTAGCTAAGGTCTTTGAAG+AGG | - | chr3.4:85516837-85516856 | MS.gene013441:intron | 35.0% |
| !! | CTGTTGACTTAATTGCGATA+TGG | - | chr3.4:85516431-85516450 | MS.gene013441:intron | 35.0% |
| !! | GTTTTGGATTTTGCAAAGGA+TGG | - | chr3.4:85515192-85515211 | MS.gene013441:CDS | 35.0% |
| !! | TTAATTCTTTGATGACGTGG+CGG | - | chr3.4:85515425-85515444 | MS.gene013441:CDS | 35.0% |
| !!! | AGTTCACTTTTTCTTTGTCG+GGG | - | chr3.4:85515457-85515476 | MS.gene013441:CDS | 35.0% |
| !!! | CAGTTCACTTTTTCTTTGTC+GGG | - | chr3.4:85515456-85515475 | MS.gene013441:CDS | 35.0% |
| !!! | GCAGTTCACTTTTTCTTTGT+CGG | - | chr3.4:85515455-85515474 | MS.gene013441:CDS | 35.0% |
| !!! | TACCGCTATTTTGGTTTTTG+TGG | - | chr3.4:85515897-85515916 | MS.gene013441:intron | 35.0% |
| AAGAAAAGGAAGCCATAAGC+AGG | + | chr3.4:85515943-85515962 | None:intergenic | 40.0% | |
| AGAAAAGGAAGCCATAAGCA+GGG | + | chr3.4:85515942-85515961 | None:intergenic | 40.0% | |
| AGAGGCAGATGAAGATATGA+TGG | - | chr3.4:85516855-85516874 | MS.gene013441:intron | 40.0% | |
| ATCAGAAGAACCCTGATTTC+CGG | - | chr3.4:85517004-85517023 | MS.gene013441:intron | 40.0% | |
| ATTCAGCGCGAGACAAAATA+AGG | - | chr3.4:85516797-85516816 | MS.gene013441:intron | 40.0% | |
| CAAAATTCTCGTCAATACCC+AGG | - | chr3.4:85514789-85514808 | MS.gene013441:CDS | 40.0% | |
| CAAGTGACATAGGTTGTCAT+AGG | + | chr3.4:85517258-85517277 | None:intergenic | 40.0% | |
| CCAAGGTGGAGAAAGTTAAT+GGG | - | chr3.4:85516593-85516612 | MS.gene013441:intron | 40.0% | |
| CCATAAGCAGGGTTCATAAA+TGG | + | chr3.4:85515931-85515950 | None:intergenic | 40.0% | |
| CCATTTATGAACCCTGCTTA+TGG | - | chr3.4:85515928-85515947 | MS.gene013441:intron | 40.0% | |
| CTAAGGTTGAGTCAACGAAT+GGG | - | chr3.4:85516506-85516525 | MS.gene013441:intron | 40.0% | |
| GCACATTGCGTGGATATATA+TGG | - | chr3.4:85515139-85515158 | MS.gene013441:CDS | 40.0% | |
| GCAGTTAACACAAGTGACAT+AGG | + | chr3.4:85517268-85517287 | None:intergenic | 40.0% | |
| GGATTCACCAAAGTTAGGAT+TGG | - | chr3.4:85515565-85515584 | MS.gene013441:intron | 40.0% | |
| GTGGAGAAAGTTAATGGGAA+TGG | - | chr3.4:85516598-85516617 | MS.gene013441:intron | 40.0% | |
| TAAGGTTGAGTCAACGAATG+GGG | - | chr3.4:85516507-85516526 | MS.gene013441:intron | 40.0% | |
| TATCCTGATATCCATGCAAC+TGG | + | chr3.4:85515248-85515267 | None:intergenic | 40.0% | |
| TGACTCAACCTTAGAATCAG+AGG | + | chr3.4:85516500-85516519 | None:intergenic | 40.0% | |
| TTCAGCGCGAGACAAAATAA+GGG | - | chr3.4:85516798-85516817 | MS.gene013441:intron | 40.0% | |
| ! | AGAACTTTTCTCCGGAAATC+AGG | + | chr3.4:85517018-85517037 | None:intergenic | 40.0% |
| ! | AGACCTTAGCTAAAGCATCT+CGG | + | chr3.4:85516831-85516850 | None:intergenic | 40.0% |
| ! | AGGACCTATACTTGACCTTT+TGG | + | chr3.4:85516966-85516985 | None:intergenic | 40.0% |
| ! | ATCATAGTCTTCAGCTTTGG+TGG | + | chr3.4:85516766-85516785 | None:intergenic | 40.0% |
| ! | ATTGAACCGTAATTGACTCC+GGG | - | chr3.4:85515164-85515183 | MS.gene013441:CDS | 40.0% |
| ! | GAACTTTTCTCCGGAAATCA+GGG | + | chr3.4:85517017-85517036 | None:intergenic | 40.0% |
| ! | GCCAGATTATACCGCTATTT+TGG | - | chr3.4:85515888-85515907 | MS.gene013441:intron | 40.0% |
| ! | GCGAGTTTGCATTTGGTAAT+AGG | + | chr3.4:85517223-85517242 | None:intergenic | 40.0% |
| ! | GGACCTATACTTGACCTTTT+GGG | + | chr3.4:85516965-85516984 | None:intergenic | 40.0% |
| ! | TACCAAGCAGAACTTTTCTC+CGG | + | chr3.4:85517026-85517045 | None:intergenic | 40.0% |
| ! | TCTAAGGTTGAGTCAACGAA+TGG | - | chr3.4:85516505-85516524 | MS.gene013441:intron | 40.0% |
| !! | GAGCTGTGTTGTTCGATTTT+AGG | - | chr3.4:85515061-85515080 | MS.gene013441:CDS | 40.0% |
| !!! | GTTCACTTTTTCTTTGTCGG+GGG | - | chr3.4:85515458-85515477 | MS.gene013441:CDS | 40.0% |
| CAATTTAAGTGTGGTCGGTG+TGG | - | chr3.4:85517183-85517202 | MS.gene013441:CDS | 45.0% | |
| CAGAAATGGCTAGTGAGCAA+AGG | - | chr3.4:85517082-85517101 | MS.gene013441:intron | 45.0% | |
| CATTTCTGCTGAGCTCATGA+CGG | + | chr3.4:85517070-85517089 | None:intergenic | 45.0% | |
| CCCATTAACTTTCTCCACCT+TGG | + | chr3.4:85516596-85516615 | None:intergenic | 45.0% | |
| CCTATACCCGGAGTCAATTA+CGG | + | chr3.4:85515173-85515192 | None:intergenic | 45.0% | |
| CCTTCAGTGAAGGTTGAGAA+AGG | - | chr3.4:85516562-85516581 | MS.gene013441:intron | 45.0% | |
| CCTTTCTCAACCTTCACTGA+AGG | + | chr3.4:85516565-85516584 | None:intergenic | 45.0% | |
| CGAAAAGATGGATACGGGTA+TGG | - | chr3.4:85515311-85515330 | MS.gene013441:CDS | 45.0% | |
| GAAAACTGGGGTCCTTCAAA+TGG | - | chr3.4:85516937-85516956 | MS.gene013441:intron | 45.0% | |
| GAGCCCAAAAGGTCAAGTAT+AGG | - | chr3.4:85516959-85516978 | MS.gene013441:intron | 45.0% | |
| GCAAAAGAGTCCTTCAGTGA+AGG | - | chr3.4:85516552-85516571 | MS.gene013441:intron | 45.0% | |
| GCCAAGGTGGAGAAAGTTAA+TGG | - | chr3.4:85516592-85516611 | MS.gene013441:intron | 45.0% | |
| GGAGGAAAAACCAGTATCTG+TGG | - | chr3.4:85516711-85516730 | MS.gene013441:intron | 45.0% | |
| GTGTTAACTGCAACAACCGT+TGG | - | chr3.4:85517277-85517296 | MS.gene013441:CDS | 45.0% | |
| GTTGGTCGAATTGTACGAAG+CGG | - | chr3.4:85514663-85514682 | MS.gene013441:CDS | 45.0% | |
| TACCTCGAACATCAAAGCGA+AGG | - | chr3.4:85516690-85516709 | MS.gene013441:intron | 45.0% | |
| TAGCCAGTTGCATGGATATC+AGG | - | chr3.4:85515242-85515261 | MS.gene013441:CDS | 45.0% | |
| TCCTTCAAATGGAGCCCAAA+AGG | - | chr3.4:85516948-85516967 | MS.gene013441:intron | 45.0% | |
| TCTCCGAGATGCTTTAGCTA+AGG | - | chr3.4:85516825-85516844 | MS.gene013441:intron | 45.0% | |
| TTCCGGAGAAAAGTTCTGCT+TGG | - | chr3.4:85517021-85517040 | MS.gene013441:intron | 45.0% | |
| TTCTTCGCTGGGACTATCAT+CGG | + | chr3.4:85514719-85514738 | None:intergenic | 45.0% | |
| ! | ACCTTTTGGGCTCCATTTGA+AGG | + | chr3.4:85516952-85516971 | None:intergenic | 45.0% |
| ! | TTGACTCCGGGTATAGGTTT+TGG | - | chr3.4:85515176-85515195 | MS.gene013441:CDS | 45.0% |
| !! | GCTGAGCTCTGGAAATGTAA+AGG | - | chr3.4:85516630-85516649 | MS.gene013441:intron | 45.0% |
| !! | TGAGAAAGGAGAAAGTGCCA+AGG | - | chr3.4:85516576-85516595 | MS.gene013441:intron | 45.0% |
| AAAAGCCCGAATGTTCTCCC+TGG | + | chr3.4:85516410-85516429 | None:intergenic | 50.0% | |
| AAACTCTCACCAAGCATCCC+AGG | - | chr3.4:85516389-85516408 | MS.gene013441:intron | 50.0% | |
| AAAGCCCGAATGTTCTCCCT+GGG | + | chr3.4:85516409-85516428 | None:intergenic | 50.0% | |
| AACTCTCACCAAGCATCCCA+GGG | - | chr3.4:85516390-85516409 | MS.gene013441:intron | 50.0% | |
| AATGGGGAGAGAGCTAAAGC+TGG | - | chr3.4:85516523-85516542 | MS.gene013441:intron | 50.0% | |
| AATGTTCTCCCTGGGATGCT+TGG | + | chr3.4:85516401-85516420 | None:intergenic | 50.0% | |
| ACTGTCACTGCCACACGAAT+AGG | + | chr3.4:85516901-85516920 | None:intergenic | 50.0% | |
| AGCATCCCAGGGAGAACATT+CGG | - | chr3.4:85516401-85516420 | MS.gene013441:intron | 50.0% | |
| ATGGGGAGAGAGCTAAAGCT+GGG | - | chr3.4:85516524-85516543 | MS.gene013441:intron | 50.0% | |
| CAGCACTGCGAGTTTGCATT+TGG | + | chr3.4:85517230-85517249 | None:intergenic | 50.0% | |
| CGTCATGAGCTCAGCAGAAA+TGG | - | chr3.4:85517068-85517087 | MS.gene013441:intron | 50.0% | |
| CTCCTTCGCTTTGATGTTCG+AGG | + | chr3.4:85516695-85516714 | None:intergenic | 50.0% | |
| CTCGAACATCAAAGCGAAGG+AGG | - | chr3.4:85516693-85516712 | MS.gene013441:intron | 50.0% | |
| CTGTCACTGCCACACGAATA+GGG | + | chr3.4:85516900-85516919 | None:intergenic | 50.0% | |
| GCAAAGGATGGATACGGGTA+AGG | - | chr3.4:85515204-85515223 | MS.gene013441:CDS | 50.0% | |
| GGGTATGGCACTGTTACTGA+GGG | - | chr3.4:85515326-85515345 | MS.gene013441:CDS | 50.0% | |
| GGTTCATCAAAGCTGAGCTC+TGG | - | chr3.4:85516619-85516638 | MS.gene013441:intron | 50.0% | |
| TATTCGTGTGGCAGTGACAG+TGG | - | chr3.4:85516900-85516919 | MS.gene013441:intron | 50.0% | |
| TGCATGTGACCCTATTCGTG+TGG | - | chr3.4:85516888-85516907 | MS.gene013441:intron | 50.0% | |
| TTGGTACTGTTGAGCCACAG+CGG | - | chr3.4:85517040-85517059 | MS.gene013441:intron | 50.0% | |
| TTTCTTTGTCGGGGGACTGA+AGG | - | chr3.4:85515466-85515485 | MS.gene013441:CDS | 50.0% | |
| ! | CCGTAATTGACTCCGGGTAT+AGG | - | chr3.4:85515170-85515189 | MS.gene013441:CDS | 50.0% |
| !! | GAAAGGAGAAAGTGCCAAGG+TGG | - | chr3.4:85516579-85516598 | MS.gene013441:intron | 50.0% |
| AGTGTGGTCGGTGTGGACAA+AGG | - | chr3.4:85517190-85517209 | MS.gene013441:CDS | 55.0% | |
| CGGGTATGGCACTGTTACTG+AGG | - | chr3.4:85515325-85515344 | MS.gene013441:CDS | 55.0% | |
| GAACGGGGCCTCTGATTCTA+AGG | - | chr3.4:85516489-85516508 | MS.gene013441:intron | 55.0% | |
| GCATCCCAGGGAGAACATTC+GGG | - | chr3.4:85516402-85516421 | MS.gene013441:intron | 55.0% | |
| GTACGAAGCGGCGAAGAAAG+CGG | - | chr3.4:85514675-85514694 | MS.gene013441:CDS | 55.0% | |
| GTTCAAGCGCATCGAGGCAA+CGG | + | chr3.4:85514744-85514763 | None:intergenic | 55.0% | |
| TGAGCTGTTCAAGCGCATCG+AGG | + | chr3.4:85514750-85514769 | None:intergenic | 55.0% | |
| TTCAAGCGCATCGAGGCAAC+GGG | + | chr3.4:85514743-85514762 | None:intergenic | 55.0% | |
| TTCGCTGGGACTATCATCGG+TGG | + | chr3.4:85514716-85514735 | None:intergenic | 55.0% | |
| ! | AGGCAACGGGTTTCTTCGCT+GGG | + | chr3.4:85514730-85514749 | None:intergenic | 55.0% |
| ! | CTGAGGGTTAGTGTACGCGT+CGG | - | chr3.4:85515342-85515361 | MS.gene013441:CDS | 55.0% |
| ! | GCTTTGTTCGACTGTGAGCG+TGG | - | chr3.4:85517135-85517154 | MS.gene013441:intron | 55.0% |
| CTTTGGTGGAGCAGCAGTGC+TGG | + | chr3.4:85516752-85516771 | None:intergenic | 60.0% | |
| GCTGGGACTATCATCGGTGG+AGG | + | chr3.4:85514713-85514732 | None:intergenic | 60.0% | |
| GGGACTATCATCGGTGGAGG+TGG | + | chr3.4:85514710-85514729 | None:intergenic | 60.0% | |
| TACTGTTGAGCCACAGCGGC+TGG | - | chr3.4:85517044-85517063 | MS.gene013441:intron | 60.0% | |
| ! | GAGGCAACGGGTTTCTTCGC+TGG | + | chr3.4:85514731-85514750 | None:intergenic | 60.0% |
| CGAAGCGGCGAAGAAAGCGG+CGG | - | chr3.4:85514678-85514697 | MS.gene013441:CDS | 65.0% | |
| CTCATGACGGCCAGCCGCTG+TGG | + | chr3.4:85517057-85517076 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85514640 | 85517311 | 85514640 | ID=MS.gene013441 |
| chr3.4 | mRNA | 85514640 | 85517311 | 85514640 | ID=MS.gene013441.t1;Parent=MS.gene013441 |
| chr3.4 | exon | 85517141 | 85517311 | 85517141 | ID=MS.gene013441.t1.exon1;Parent=MS.gene013441.t1 |
| chr3.4 | CDS | 85517141 | 85517311 | 85517141 | ID=cds.MS.gene013441.t1;Parent=MS.gene013441.t1 |
| chr3.4 | exon | 85514640 | 85515578 | 85514640 | ID=MS.gene013441.t1.exon2;Parent=MS.gene013441.t1 |
| chr3.4 | CDS | 85514640 | 85515578 | 85514640 | ID=cds.MS.gene013441.t1;Parent=MS.gene013441.t1 |
| Gene Sequence |
| Protein sequence |
