Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51225.t1 | XP_003595735.1 | 93 | 344 | 24 | 0 | 3 | 346 | 23 | 366 | 2.30E-173 | 618.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51225.t1 | Q9FPS3 | 44.2 | 360 | 175 | 8 | 8 | 347 | 30 | 383 | 6.3e-63 | 242.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51225.t1 | G7IGQ8 | 93.0 | 344 | 24 | 0 | 3 | 346 | 23 | 366 | 1.6e-173 | 618.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene28183 | MS.gene51225 | PPI |
MS.gene06786 | MS.gene51225 | PPI |
MS.gene58136 | MS.gene51225 | PPI |
MS.gene58134 | MS.gene51225 | PPI |
MS.gene049411 | MS.gene51225 | PPI |
MS.gene030686 | MS.gene51225 | PPI |
MS.gene013441 | MS.gene51225 | PPI |
MS.gene51225 | MS.gene70283 | PPI |
MS.gene28454 | MS.gene51225 | PPI |
MS.gene70282 | MS.gene51225 | PPI |
MS.gene030685 | MS.gene51225 | PPI |
MS.gene51225 | MS.gene06541 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51225.t1 | MTR_2g060050 | 93.023 | 344 | 24 | 0 | 3 | 346 | 23 | 366 | 0.0 | 642 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51225.t1 | AT4G30890 | 62.887 | 194 | 69 | 2 | 156 | 347 | 191 | 383 | 2.24e-77 | 247 |
MS.gene51225.t1 | AT4G30890 | 62.887 | 194 | 69 | 2 | 156 | 347 | 191 | 383 | 2.24e-77 | 247 |
MS.gene51225.t1 | AT4G30890 | 62.887 | 194 | 69 | 2 | 156 | 347 | 191 | 383 | 2.24e-77 | 247 |
Find 56 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTATTCTCAGAAATTTAA+AGG | 0.166354 | 7.3:+28048665 | MS.gene51225:CDS |
TGGAGGACAACTCCAAAATT+TGG | 0.196841 | 7.3:+28050472 | MS.gene51225:CDS |
CTTTAGTTATCACCAAATTT+TGG | 0.210978 | 7.3:-28050484 | None:intergenic |
GTTACACCAATTGACGAAAA+TGG | 0.235400 | 7.3:+28048821 | MS.gene51225:CDS |
TTTATTCCCTCGGAATTAAA+TGG | 0.250861 | 7.3:+28050443 | MS.gene51225:CDS |
GTAACAACAGATTTATTCTT+TGG | 0.252796 | 7.3:-28050407 | None:intergenic |
GGTCTTCCTGAAATGCTATT+TGG | 0.264675 | 7.3:-28049541 | None:intergenic |
CTTTAAATTTCTGAGAATAA+TGG | 0.266832 | 7.3:-28048664 | None:intergenic |
TTTGGTGCTTTCGGTGAATT+TGG | 0.281536 | 7.3:-28048629 | None:intergenic |
AGAACATCTTCAAACATAAC+AGG | 0.295458 | 7.3:-28049496 | None:intergenic |
GATGTGCCAAATAGCATTTC+AGG | 0.297505 | 7.3:+28049535 | MS.gene51225:CDS |
ATAAATTCCCAGAGTTAATA+AGG | 0.309476 | 7.3:-28049018 | None:intergenic |
CCAAGCTCAAATTTGTAAAC+TGG | 0.311830 | 7.3:-28048853 | None:intergenic |
ATTTAACCAAGACTTGAAAA+AGG | 0.314327 | 7.3:+28048946 | MS.gene51225:CDS |
TAATGGCGAGGAGCACTATT+TGG | 0.332957 | 7.3:-28048647 | None:intergenic |
GGACAGTCTTCAAGTCTTAA+TGG | 0.340469 | 7.3:+28050329 | MS.gene51225:CDS |
TTCTTTAACTTTGTTTGCAC+TGG | 0.357347 | 7.3:-28048783 | None:intergenic |
GAGAAGAATCAGCTGCAATT+TGG | 0.366023 | 7.3:+28048569 | MS.gene51225:CDS |
GGAGCACTATTTGGTGCTTT+CGG | 0.377101 | 7.3:-28048638 | None:intergenic |
GGAATTTCTTAGCTTTGTAA+TGG | 0.399282 | 7.3:+28050274 | MS.gene51225:CDS |
TTCTTTAAGTTTACACCGCT+TGG | 0.426766 | 7.3:-28049433 | None:intergenic |
TTCTGTGGAAGATGATGAAT+CGG | 0.440888 | 7.3:+28050373 | MS.gene51225:CDS |
TGCAGCTGATTCTTCTCCAC+AGG | 0.448468 | 7.3:-28048563 | None:intergenic |
TGCATAACAGCATGCCCATT+AGG | 0.448913 | 7.3:-28048971 | None:intergenic |
CCAGTTTACAAATTTGAGCT+TGG | 0.451670 | 7.3:+28048853 | MS.gene51225:CDS |
TCCTGCAAAAGCTGAACAAA+AGG | 0.451972 | 7.3:-28049082 | None:intergenic |
GACGAATTACTGAAGCTTGA+AGG | 0.453272 | 7.3:+28050308 | MS.gene51225:CDS |
GTGCTTTCGGTGAATTTGGC+AGG | 0.453991 | 7.3:-28048625 | None:intergenic |
CCTCGAGGCCTTATTAACTC+TGG | 0.457487 | 7.3:+28049010 | MS.gene51225:CDS |
TGCAACAGTGCAGGCTCTCA+TGG | 0.460184 | 7.3:+28049051 | MS.gene51225:CDS |
CAAAATTTGGTGATAACTAA+AGG | 0.475469 | 7.3:+28050485 | MS.gene51225:CDS |
GACTCAAAGCTTTATTCCCT+CGG | 0.489495 | 7.3:+28050433 | MS.gene51225:CDS |
TTTGAGCTTGGATGCTTCTG+AGG | 0.501647 | 7.3:+28048865 | MS.gene51225:CDS |
CTTCCTTAGTGCAACAGTGC+AGG | 0.507270 | 7.3:+28049042 | MS.gene51225:CDS |
TTTATAGTTTCTGTTACTTG+AGG | 0.515498 | 7.3:-28048713 | None:intergenic |
CTCGAGGCCTTATTAACTCT+GGG | 0.522645 | 7.3:+28049011 | MS.gene51225:CDS |
GAAATGCTATTTGGCACATC+CGG | 0.523496 | 7.3:-28049532 | None:intergenic |
TTTCAGGCAAGAAGATGCTC+AGG | 0.523624 | 7.3:+28050253 | MS.gene51225:intron |
GGCATTACTAATTTCTCCGA+CGG | 0.529348 | 7.3:+28048746 | MS.gene51225:CDS |
ACAGAAACTATAAAAGAGAA+TGG | 0.530330 | 7.3:+28048722 | MS.gene51225:CDS |
AAAATACCATTTAATTCCGA+GGG | 0.530612 | 7.3:-28050449 | None:intergenic |
GATGATGAATCGGAAACAGT+AGG | 0.571313 | 7.3:+28050383 | MS.gene51225:CDS |
AGAATAAATCTGTTGTTACA+AGG | 0.579251 | 7.3:+28050411 | MS.gene51225:CDS |
AAGAGCTCGTACCATTCCTA+AGG | 0.579648 | 7.3:+28049108 | MS.gene51225:CDS |
GAGCCTGCACTGTTGCACTA+AGG | 0.586819 | 7.3:-28049045 | None:intergenic |
ATGATGAATCGGAAACAGTA+GGG | 0.591564 | 7.3:+28050384 | MS.gene51225:CDS |
TGCGAGAAATGAAAAGCCTG+TGG | 0.616964 | 7.3:+28048547 | MS.gene51225:CDS |
GTCAAGGATCTTCAGCCTCG+AGG | 0.628925 | 7.3:+28048995 | MS.gene51225:CDS |
AGGACAGACTACCTTAGGAA+TGG | 0.633984 | 7.3:-28049119 | None:intergenic |
AATTTCTGAGAATAATGGCG+AGG | 0.673086 | 7.3:-28048659 | None:intergenic |
ATAGCATTTCAGGAAGACCA+AGG | 0.674813 | 7.3:+28049545 | MS.gene51225:CDS |
GAACATCTTCAAACATAACA+GGG | 0.680728 | 7.3:-28049495 | None:intergenic |
GCATGCTGTTATGCATGTCA+AGG | 0.691718 | 7.3:+28048979 | MS.gene51225:CDS |
GAAACTATAAAAGAGAATGG+CGG | 0.694660 | 7.3:+28048725 | MS.gene51225:CDS |
ACTCAATTTGACATGCCAAG+CGG | 0.702135 | 7.3:+28049418 | MS.gene51225:CDS |
CCAGAGTTAATAAGGCCTCG+AGG | 0.730888 | 7.3:-28049010 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | + | chr7.3:28049864-28049883 | MS.gene51225:intron | 0.0% |
!! | TATATATATATATATATATA+GGG | + | chr7.3:28049865-28049884 | MS.gene51225:intron | 0.0% |
!! | TTAAATTGTAAGATTGTATA+AGG | + | chr7.3:28048440-28048459 | MS.gene51225:intron | 15.0% |
!!! | TTATTACTGTGTAATTTTTT+AGG | + | chr7.3:28049357-28049376 | MS.gene51225:intron | 15.0% |
!! | ACTCCTAAAAAAAAAAAAAG+CGG | - | chr7.3:28049979-28049998 | None:intergenic | 20.0% |
!! | ATATATGTCCATAGAAAATT+AGG | - | chr7.3:28049771-28049790 | None:intergenic | 20.0% |
!! | CATTATTCTCAGAAATTTAA+AGG | + | chr7.3:28048665-28048684 | MS.gene51225:CDS | 20.0% |
!! | GAAATTTATACACAATATTC+AGG | + | chr7.3:28050118-28050137 | MS.gene51225:intron | 20.0% |
!! | GAATATTGTGTATAAATTTC+AGG | - | chr7.3:28050118-28050137 | None:intergenic | 20.0% |
!! | TCATGAAAATAATTGAGAAA+TGG | + | chr7.3:28049821-28049840 | MS.gene51225:intron | 20.0% |
!!! | CTTTAAATTTCTGAGAATAA+TGG | - | chr7.3:28048667-28048686 | None:intergenic | 20.0% |
!!! | TGTAATTTTTATGATACTCA+TGG | + | chr7.3:28050216-28050235 | MS.gene51225:intron | 20.0% |
! | AAAAATACCATTTAATTCCG+AGG | - | chr7.3:28050453-28050472 | None:intergenic | 25.0% |
! | AAAATACCATTTAATTCCGA+GGG | - | chr7.3:28050452-28050471 | None:intergenic | 25.0% |
! | ACAGAAACTATAAAAGAGAA+TGG | + | chr7.3:28048722-28048741 | MS.gene51225:CDS | 25.0% |
! | AGAATAAATCTGTTGTTACA+AGG | + | chr7.3:28050411-28050430 | MS.gene51225:CDS | 25.0% |
! | ATAAATTCCCAGAGTTAATA+AGG | - | chr7.3:28049021-28049040 | None:intergenic | 25.0% |
! | ATTTAACCAAGACTTGAAAA+AGG | + | chr7.3:28048946-28048965 | MS.gene51225:CDS | 25.0% |
! | CTCCTAAAAAAAAAAAAAGC+GGG | - | chr7.3:28049978-28049997 | None:intergenic | 25.0% |
! | GAGTAGAAAAGCTATTATAA+AGG | - | chr7.3:28050020-28050039 | None:intergenic | 25.0% |
! | GTAACAACAGATTTATTCTT+TGG | - | chr7.3:28050410-28050429 | None:intergenic | 25.0% |
! | TTATTGAATGAACCATCATA+TGG | + | chr7.3:28050092-28050111 | MS.gene51225:intron | 25.0% |
! | TTGAAGAATGTGTTCAAAAA+TGG | + | chr7.3:28048896-28048915 | MS.gene51225:CDS | 25.0% |
!! | ATTTTCTATGGACATATATG+TGG | + | chr7.3:28049772-28049791 | MS.gene51225:intron | 25.0% |
!! | CAAAATTTGGTGATAACTAA+AGG | + | chr7.3:28050485-28050504 | MS.gene51225:CDS | 25.0% |
!! | CTTTAGTTATCACCAAATTT+TGG | - | chr7.3:28050487-28050506 | None:intergenic | 25.0% |
!! | TCGGAATTAAATGGTATTTT+TGG | + | chr7.3:28050452-28050471 | MS.gene51225:CDS | 25.0% |
!! | TTGAACTTTTCTGATTACAA+GGG | - | chr7.3:28049320-28049339 | None:intergenic | 25.0% |
!! | TTTATAGTTTCTGTTACTTG+AGG | - | chr7.3:28048716-28048735 | None:intergenic | 25.0% |
!! | TTTGAACTTTTCTGATTACA+AGG | - | chr7.3:28049321-28049340 | None:intergenic | 25.0% |
!!! | GAATTAAATGGTATTTTTGG+AGG | + | chr7.3:28050455-28050474 | MS.gene51225:CDS | 25.0% |
!!! | GATACAGATTCTTTTAAGTT+TGG | + | chr7.3:28049460-28049479 | MS.gene51225:CDS | 25.0% |
!!! | TACTGTGTAATTTTTTAGGT+TGG | + | chr7.3:28049361-28049380 | MS.gene51225:intron | 25.0% |
!!! | TGTTCTGAAAATTTTTACTC+CGG | + | chr7.3:28049513-28049532 | MS.gene51225:CDS | 25.0% |
AATGTGTTCAAAAATGGTAG+TGG | + | chr7.3:28048902-28048921 | MS.gene51225:CDS | 30.0% | |
AATTAAATTGTCACCAACCT+TGG | - | chr7.3:28049565-28049584 | None:intergenic | 30.0% | |
AATTGTAACTCTCAGTGTAT+AGG | - | chr7.3:28049948-28049967 | None:intergenic | 30.0% | |
AGAACATCTTCAAACATAAC+AGG | - | chr7.3:28049499-28049518 | None:intergenic | 30.0% | |
ATAAATTTCAGGCCATATGA+TGG | - | chr7.3:28050107-28050126 | None:intergenic | 30.0% | |
ATTCGACTAAAAAAGTGGTT+AGG | - | chr7.3:28049700-28049719 | None:intergenic | 30.0% | |
CCATAGAAAATTAGGCAATT+AGG | - | chr7.3:28049763-28049782 | None:intergenic | 30.0% | |
GAAACTATAAAAGAGAATGG+CGG | + | chr7.3:28048725-28048744 | MS.gene51225:CDS | 30.0% | |
GAACATCTTCAAACATAACA+GGG | - | chr7.3:28049498-28049517 | None:intergenic | 30.0% | |
TTCGACTAAAAAAGTGGTTA+GGG | - | chr7.3:28049699-28049718 | None:intergenic | 30.0% | |
TTTATTCCCTCGGAATTAAA+TGG | + | chr7.3:28050443-28050462 | MS.gene51225:CDS | 30.0% | |
TTTGAATTTACGAGAGTGAT+GGG | + | chr7.3:28048484-28048503 | MS.gene51225:intron | 30.0% | |
! | ATATATGAAAAGTCTTGTCC+TGG | - | chr7.3:28049669-28049688 | None:intergenic | 30.0% |
! | CCTAATTGCCTAATTTTCTA+TGG | + | chr7.3:28049760-28049779 | MS.gene51225:intron | 30.0% |
! | TATATGAAAAGTCTTGTCCT+GGG | - | chr7.3:28049668-28049687 | None:intergenic | 30.0% |
! | TTCTTTAACTTTGTTTGCAC+TGG | - | chr7.3:28048786-28048805 | None:intergenic | 30.0% |
!! | GGAATTTCTTAGCTTTGTAA+TGG | + | chr7.3:28050274-28050293 | MS.gene51225:CDS | 30.0% |
!!! | AACTTTTCTAGTTTCTTCTG+TGG | + | chr7.3:28050358-28050377 | MS.gene51225:CDS | 30.0% |
!!! | AGATTCTTTTAAGTTTGGAC+GGG | + | chr7.3:28049465-28049484 | MS.gene51225:CDS | 30.0% |
!!! | AGCCCGCTTTTTTTTTTTTT+AGG | + | chr7.3:28049973-28049992 | MS.gene51225:intron | 30.0% |
!!! | CAGATTCTTTTAAGTTTGGA+CGG | + | chr7.3:28049464-28049483 | MS.gene51225:CDS | 30.0% |
AAACTCTACTACATGAATGC+AGG | - | chr7.3:28048467-28048486 | None:intergenic | 35.0% | |
ATGATGAATCGGAAACAGTA+GGG | + | chr7.3:28050384-28050403 | MS.gene51225:CDS | 35.0% | |
ATGCTTAGGTATGATGTGAT+TGG | + | chr7.3:28050179-28050198 | MS.gene51225:intron | 35.0% | |
CAACGATTCGACTAAAAAAG+TGG | - | chr7.3:28049705-28049724 | None:intergenic | 35.0% | |
CCAAGCTCAAATTTGTAAAC+TGG | - | chr7.3:28048856-28048875 | None:intergenic | 35.0% | |
CCAGTTTACAAATTTGAGCT+TGG | + | chr7.3:28048853-28048872 | MS.gene51225:CDS | 35.0% | |
GTTACACCAATTGACGAAAA+TGG | + | chr7.3:28048821-28048840 | MS.gene51225:CDS | 35.0% | |
GTTTGAATTTACGAGAGTGA+TGG | + | chr7.3:28048483-28048502 | MS.gene51225:intron | 35.0% | |
TTCTGTGGAAGATGATGAAT+CGG | + | chr7.3:28050373-28050392 | MS.gene51225:CDS | 35.0% | |
! | AATTTCTGAGAATAATGGCG+AGG | - | chr7.3:28048662-28048681 | None:intergenic | 35.0% |
! | GCATATACTGATTGTGATTG+TGG | - | chr7.3:28049738-28049757 | None:intergenic | 35.0% |
! | TCAGCAAATGCTTTTAGTGT+GGG | - | chr7.3:28049391-28049410 | None:intergenic | 35.0% |
! | TTCTTTAAGTTTACACCGCT+TGG | - | chr7.3:28049436-28049455 | None:intergenic | 35.0% |
!! | ACTTGAAAAAGGCACCTAAT+GGG | + | chr7.3:28048957-28048976 | MS.gene51225:CDS | 35.0% |
!! | TTTGCACTGGTGATTTTTGA+GGG | - | chr7.3:28048773-28048792 | None:intergenic | 35.0% |
ACCCTGAAACTGTATCATTG+CGG | + | chr7.3:28048510-28048529 | MS.gene51225:intron | 40.0% | |
ACTCAATTTGACATGCCAAG+CGG | + | chr7.3:28049418-28049437 | MS.gene51225:CDS | 40.0% | |
ATAGCATTTCAGGAAGACCA+AGG | + | chr7.3:28049545-28049564 | MS.gene51225:CDS | 40.0% | |
CTGTATCATTGCGGGTAAAA+AGG | + | chr7.3:28048519-28048538 | MS.gene51225:intron | 40.0% | |
GACGAATTACTGAAGCTTGA+AGG | + | chr7.3:28050308-28050327 | MS.gene51225:CDS | 40.0% | |
GAGAAGAATCAGCTGCAATT+TGG | + | chr7.3:28048569-28048588 | MS.gene51225:CDS | 40.0% | |
GATGATGAATCGGAAACAGT+AGG | + | chr7.3:28050383-28050402 | MS.gene51225:CDS | 40.0% | |
GATGTGCCAAATAGCATTTC+AGG | + | chr7.3:28049535-28049554 | MS.gene51225:CDS | 40.0% | |
GGACAGTCTTCAAGTCTTAA+TGG | + | chr7.3:28050329-28050348 | MS.gene51225:CDS | 40.0% | |
GGCATTACTAATTTCTCCGA+CGG | + | chr7.3:28048746-28048765 | MS.gene51225:CDS | 40.0% | |
GGTCTTCCTGAAATGCTATT+TGG | - | chr7.3:28049544-28049563 | None:intergenic | 40.0% | |
GTTGTTGATATATGCAGCAG+AGG | - | chr7.3:28049142-28049161 | None:intergenic | 40.0% | |
TCCTGCAAAAGCTGAACAAA+AGG | - | chr7.3:28049085-28049104 | None:intergenic | 40.0% | |
TGGAGGACAACTCCAAAATT+TGG | + | chr7.3:28050472-28050491 | MS.gene51225:CDS | 40.0% | |
TTATGCTACTCCCACTTAGT+GGG | + | chr7.3:28049603-28049622 | MS.gene51225:intron | 40.0% | |
TTTATGCTACTCCCACTTAG+TGG | + | chr7.3:28049602-28049621 | MS.gene51225:intron | 40.0% | |
! | CTCAGCAAATGCTTTTAGTG+TGG | - | chr7.3:28049392-28049411 | None:intergenic | 40.0% |
! | GAAATGCTATTTGGCACATC+CGG | - | chr7.3:28049535-28049554 | None:intergenic | 40.0% |
! | GCAGTACCATTTTCGTCAAT+TGG | - | chr7.3:28048830-28048849 | None:intergenic | 40.0% |
! | TCCTTTTGTTCAGCTTTTGC+AGG | + | chr7.3:28049081-28049100 | MS.gene51225:CDS | 40.0% |
!! | GACTCAAAGCTTTATTCCCT+CGG | + | chr7.3:28050433-28050452 | MS.gene51225:CDS | 40.0% |
!! | GACTTGAAAAAGGCACCTAA+TGG | + | chr7.3:28048956-28048975 | MS.gene51225:CDS | 40.0% |
!! | GTGTTCAAAAATGGTAGTGG+TGG | + | chr7.3:28048905-28048924 | MS.gene51225:CDS | 40.0% |
!! | GTTTGCACTGGTGATTTTTG+AGG | - | chr7.3:28048774-28048793 | None:intergenic | 40.0% |
!! | TTTGGTGCTTTCGGTGAATT+TGG | - | chr7.3:28048632-28048651 | None:intergenic | 40.0% |
!!! | TAGGTGCCTTTTTCAAGTCT+TGG | - | chr7.3:28048955-28048974 | None:intergenic | 40.0% |
AAGAGCTCGTACCATTCCTA+AGG | + | chr7.3:28049108-28049127 | MS.gene51225:CDS | 45.0% | |
ACCCGCAATGATACAGTTTC+AGG | - | chr7.3:28048515-28048534 | None:intergenic | 45.0% | |
AGCATCTTCTTGCCTGAAAG+TGG | - | chr7.3:28050252-28050271 | None:intergenic | 45.0% | |
AGGACAGACTACCTTAGGAA+TGG | - | chr7.3:28049122-28049141 | None:intergenic | 45.0% | |
CAAGTCGTATCCCACTAAGT+GGG | - | chr7.3:28049616-28049635 | None:intergenic | 45.0% | |
CATTTCAGGAAGACCAAGGT+TGG | + | chr7.3:28049549-28049568 | MS.gene51225:intron | 45.0% | |
CCCGCAATGATACAGTTTCA+GGG | - | chr7.3:28048514-28048533 | None:intergenic | 45.0% | |
CCCTGAAACTGTATCATTGC+GGG | + | chr7.3:28048511-28048530 | MS.gene51225:intron | 45.0% | |
GCATGCTGTTATGCATGTCA+AGG | + | chr7.3:28048979-28048998 | MS.gene51225:CDS | 45.0% | |
TGCAATGCAGTCACATGCTT+AGG | + | chr7.3:28050165-28050184 | MS.gene51225:intron | 45.0% | |
TGCATAACAGCATGCCCATT+AGG | - | chr7.3:28048974-28048993 | None:intergenic | 45.0% | |
TGCGAGAAATGAAAAGCCTG+TGG | + | chr7.3:28048547-28048566 | MS.gene51225:CDS | 45.0% | |
TTTCAGGCAAGAAGATGCTC+AGG | + | chr7.3:28050253-28050272 | MS.gene51225:intron | 45.0% | |
TTTGAGCTTGGATGCTTCTG+AGG | + | chr7.3:28048865-28048884 | MS.gene51225:CDS | 45.0% | |
!! | CTCGAGGCCTTATTAACTCT+GGG | + | chr7.3:28049011-28049030 | MS.gene51225:CDS | 45.0% |
!! | GGAGCACTATTTGGTGCTTT+CGG | - | chr7.3:28048641-28048660 | None:intergenic | 45.0% |
!! | TAATGGCGAGGAGCACTATT+TGG | - | chr7.3:28048650-28048669 | None:intergenic | 45.0% |
AGCAGAGGACAGACTACCTT+AGG | - | chr7.3:28049127-28049146 | None:intergenic | 50.0% | |
CCAAGTCGTATCCCACTAAG+TGG | - | chr7.3:28049617-28049636 | None:intergenic | 50.0% | |
CCACTTAGTGGGATACGACT+TGG | + | chr7.3:28049614-28049633 | MS.gene51225:intron | 50.0% | |
CCAGAGTTAATAAGGCCTCG+AGG | - | chr7.3:28049013-28049032 | None:intergenic | 50.0% | |
CTTCCTTAGTGCAACAGTGC+AGG | + | chr7.3:28049042-28049061 | MS.gene51225:CDS | 50.0% | |
GTGCTTTCGGTGAATTTGGC+AGG | - | chr7.3:28048628-28048647 | None:intergenic | 50.0% | |
! | GAAAAGTCTTGTCCTGGGCA+GGG | - | chr7.3:28049663-28049682 | None:intergenic | 50.0% |
! | TGAAAAGTCTTGTCCTGGGC+AGG | - | chr7.3:28049664-28049683 | None:intergenic | 50.0% |
! | TGCAGCTGATTCTTCTCCAC+AGG | - | chr7.3:28048566-28048585 | None:intergenic | 50.0% |
!! | CCTCGAGGCCTTATTAACTC+TGG | + | chr7.3:28049010-28049029 | MS.gene51225:CDS | 50.0% |
!! | GGTGATTTTTGAGGGACCGT+CGG | - | chr7.3:28048765-28048784 | None:intergenic | 50.0% |
CTTGCCTGAAAGTGGCACGT+TGG | - | chr7.3:28050244-28050263 | None:intergenic | 55.0% | |
GAGCCTGCACTGTTGCACTA+AGG | - | chr7.3:28049048-28049067 | None:intergenic | 55.0% | |
GTCAAGGATCTTCAGCCTCG+AGG | + | chr7.3:28048995-28049014 | MS.gene51225:CDS | 55.0% | |
TATGCTACTCTTCCCTGCCC+AGG | + | chr7.3:28049648-28049667 | MS.gene51225:intron | 55.0% | |
TGCAACAGTGCAGGCTCTCA+TGG | + | chr7.3:28049051-28049070 | MS.gene51225:CDS | 55.0% | |
!! | GGTACCAACGTGCCACTTTC+AGG | + | chr7.3:28050237-28050256 | MS.gene51225:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 28048436 | 28050514 | 28048436 | ID=MS.gene51225 |
chr7.3 | mRNA | 28048436 | 28050514 | 28048436 | ID=MS.gene51225.t1;Parent=MS.gene51225 |
chr7.3 | exon | 28048436 | 28048446 | 28048436 | ID=MS.gene51225.t1.exon1;Parent=MS.gene51225.t1 |
chr7.3 | CDS | 28048436 | 28048446 | 28048436 | ID=cds.MS.gene51225.t1;Parent=MS.gene51225.t1 |
chr7.3 | exon | 28048541 | 28049129 | 28048541 | ID=MS.gene51225.t1.exon2;Parent=MS.gene51225.t1 |
chr7.3 | CDS | 28048541 | 28049129 | 28048541 | ID=cds.MS.gene51225.t1;Parent=MS.gene51225.t1 |
chr7.3 | exon | 28049379 | 28049566 | 28049379 | ID=MS.gene51225.t1.exon3;Parent=MS.gene51225.t1 |
chr7.3 | CDS | 28049379 | 28049566 | 28049379 | ID=cds.MS.gene51225.t1;Parent=MS.gene51225.t1 |
chr7.3 | exon | 28050259 | 28050514 | 28050259 | ID=MS.gene51225.t1.exon4;Parent=MS.gene51225.t1 |
chr7.3 | CDS | 28050259 | 28050514 | 28050259 | ID=cds.MS.gene51225.t1;Parent=MS.gene51225.t1 |
Gene Sequence |
Protein sequence |