AlfalfaGEDB | MS.gene072221

M. sativa cultivar XinJiangDaYe / MS.gene072221

KEGG: K15174
GO: GO:0005575 GO:0006139 GO:0006325 GO:0006354 GO:0006368 GO:0006464 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016593 GO:0018130 GO:0019438 GO:0019538 GO:0032774 GO:0032991 GO:0034641 GO:0034654 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901576
PFAM: PF03985.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072221.t1	XP_003627041.2	96	522	13	1	149	670	147	660	1.50E-242	849

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072221.t1	F4HQA1	65.3	430	130	4	248	670	172	589	2.2e-149	530.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072221.t1	G7LGN7	96.0	522	13	1	149	670	147	660	1.1e-242	849.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008348	MS.gene072221	PPI
MS.gene017622	MS.gene072221	PPI
MS.gene029611	MS.gene072221	PPI
MS.gene037409	MS.gene072221	PPI
MS.gene046235	MS.gene072221	PPI
MS.gene061575	MS.gene072221	PPI
MS.gene072221	MS.gene071310	PPI
MS.gene072221	MS.gene90863	PPI
MS.gene072221	MS.gene55174	PPI
MS.gene072221	MS.gene012127	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072221.t1	MTR_8g014460	95.970	670	17	2	1	670	1	660	0.0	1292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072221.t1	AT1G79730	57.143	595	195	12	87	670	44	589	0.0	579

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Find 183 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTTTAGTTGGAAG+AGG	0.466373	8.1:+82867632	None:intergenic
AAAATATACAATAACATCTC+TGG	0.481345	8.1:-82869745	MS.gene072221:CDS
AAAGAGAGACCTACTGATAA+AGG	0.406766	8.1:-82869455	MS.gene072221:CDS
AAATGAAACTAAGAATGTTG+TGG	0.533829	8.1:+82867795	None:intergenic
AACAATGGCATAAACTCAAC+AGG	0.461078	8.1:+82869034	None:intergenic
AACTGCACAACCTAAGCTAA+TGG	0.439927	8.1:-82870474	MS.gene072221:CDS
AAGACTCAGATGGTGTCATC+TGG	0.371458	8.1:-82870850	MS.gene072221:CDS
AAGAGAGCTACTCCGTTGTT+GGG	0.479687	8.1:-82870778	MS.gene072221:CDS
AAGCATGGAATCGGCTAAAC+AGG	0.390402	8.1:-82869393	MS.gene072221:intron
AAGGAGCTTAGAGAGAAGAA+GGG	0.629644	8.1:-82869275	MS.gene072221:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTTCTCAGGATTTGC+AGG	+	chr8.1:82870665-82870684	None:intergenic	30.0%
AAAACAAGTTTAGTTGGAAG+AGG	+	chr8.1:82871191-82871210	None:intergenic	30.0%
AACCTTGTATAAACCTTGAA+AGG	+	chr8.1:82871407-82871426	None:intergenic	30.0%
AACTATTGAATCTAGCATGA+TGG	+	chr8.1:82868727-82868746	None:intergenic	30.0%
AAGCTTTCTCTTAATTGCAA+CGG	-	chr8.1:82868512-82868531	MS.gene072221:intron	30.0%
ACTGCAATAACATGTTTACT+TGG	+	chr8.1:82868210-82868229	None:intergenic	30.0%
AGCTTACACAAAAAAGTTGT+AGG	+	chr8.1:82868099-82868118	None:intergenic	30.0%
ATACAGTAGACGGTATAAAA+AGG	-	chr8.1:82870215-82870234	MS.gene072221:intron	30.0%
ATGAAACTAAGAATGTTGTG+GGG	+	chr8.1:82871026-82871045	None:intergenic	30.0%
ATGAATAATGCTGAATGAGT+AGG	-	chr8.1:82869222-82869241	MS.gene072221:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	82867298	82871544	82867298	ID=MS.gene072221
chr8.1	mRNA	82867298	82871544	82867298	ID=MS.gene072221.t1;Parent=MS.gene072221
chr8.1	exon	82870731	82871544	82870731	ID=MS.gene072221.t1.exon1;Parent=MS.gene072221.t1
chr8.1	CDS	82870731	82871544	82870731	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82870452	82870554	82870452	ID=MS.gene072221.t1.exon2;Parent=MS.gene072221.t1
chr8.1	CDS	82870452	82870554	82870452	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82869666	82869773	82869666	ID=MS.gene072221.t1.exon3;Parent=MS.gene072221.t1
chr8.1	CDS	82869666	82869773	82869666	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82869394	82869574	82869394	ID=MS.gene072221.t1.exon4;Parent=MS.gene072221.t1
chr8.1	CDS	82869394	82869574	82869394	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82869242	82869318	82869242	ID=MS.gene072221.t1.exon5;Parent=MS.gene072221.t1
chr8.1	CDS	82869242	82869318	82869242	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82869019	82869138	82869019	ID=MS.gene072221.t1.exon6;Parent=MS.gene072221.t1
chr8.1	CDS	82869019	82869138	82869019	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82868736	82868841	82868736	ID=MS.gene072221.t1.exon7;Parent=MS.gene072221.t1
chr8.1	CDS	82868736	82868841	82868736	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82868130	82868216	82868130	ID=MS.gene072221.t1.exon8;Parent=MS.gene072221.t1
chr8.1	CDS	82868130	82868216	82868130	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82867937	82868005	82867937	ID=MS.gene072221.t1.exon9;Parent=MS.gene072221.t1
chr8.1	CDS	82867937	82868005	82867937	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82867771	82867842	82867771	ID=MS.gene072221.t1.exon10;Parent=MS.gene072221.t1
chr8.1	CDS	82867771	82867842	82867771	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82867511	82867654	82867511	ID=MS.gene072221.t1.exon11;Parent=MS.gene072221.t1
chr8.1	CDS	82867511	82867654	82867511	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1
chr8.1	exon	82867298	82867429	82867298	ID=MS.gene072221.t1.exon12;Parent=MS.gene072221.t1
chr8.1	CDS	82867298	82867429	82867298	ID=cds.MS.gene072221.t1;Parent=MS.gene072221.t1

Gene Sequence

>MS.gene072221

ATGGCCTCTTATAGGCCTTTCCCTCCTCCGGCGAGTCAAAACCCTATCGCACCACCACCTCCGCCGCCGCAACAACGGCCAAGTAATTGGGGTGCTTACGGTTACGGTGGTGTTGTTGATTTACCACCTCAAAATTCAAACTTTCAACATCACCAGCATCAAATTCAGCATCACCATGTTCCTCATGCTCCTCCGCCTCCACCACCGTCGAATTATTATCCATATCAGCCACCACCACCACCTCCTCCACCAGATAATTCATATCAGCCACCACCACCACCACCGGGTTCTATGTATTATCCTTCTAATAATAATAATAATCAATACAATCATCAACAACAGCAACAACAGCAGCCACCACCGCCTCCGCCACCGGGTTCTTCAATGCCACCTCCGCCGCCTCCTCCAGCCTCGCCACCGCCTCCTCCTCCGACAAACAATGAAGTAGAGAGGGTAGTCAATAAAGGGTCATTGGGTAAACGCGAGCGCGATGGAGTTTCGCATTCGCATAAACAGCATCAGAAGTCTTCTCATGCTCATCTTCCGAGGAGAGTTGAGACAGAGGAAGAGAAGAGAATGAGGAAGAAGAAGGAGTATGAGAAGCACAGGCAAGAGGAAAAGCATAGGCACCAGCAGAAGCAGTTGAAAGAATCACAGAATAGTGTGTTGCAGAAGACTCAGATGGTGTCATCTGGGGGAGCTGGAAAGGTGCACGGTTCAATTGCCGGGTCTCGAATGGGAGATAAGAGAGCTACTCCGTTGTTGGGTGGCGAGAGGGTTGAAAATAGGTTGAAAAAGCCTACAACTTTTTTGTGTAAGCTCAGGTGAGGATTTTAATGATAGGGTAGTTAATTAGGTTAATTTTTCGTTTTAAACAAGATAAATGATAGTGTATGTAAGAATAGTTATCCAAGTAAACATGTTATTGCAGTGTTTTTAGTGTTCTTAACTTTCTTGCATCTGATCTGGTGTTTTGGTGTTTACTTCCAGTACTGACAATTTTATATTTGTATTCTCATCCAAGGTTTCGAAATGAGCTACCGGATCCAACTGCACAACCTAAGCTAATGGCATTCAAGAAAGATAAAGATCAGTATGTTATCTCATTCCCGTGATTTCCATTAGTATAGAGCTACCAAAACCTATATTAGATTGATGGAGTACTGATTTTGAATGTTATCAATTTATCATATTTTCTGTCACTTTAATAACTAAAGCTTTCTCTTAATTGCAACGGCAACTGGTGGGTGATAAGTGTTCAAAAGGATAACTGATACCCGAACAAGAAACATAAAATGGTTGATTCTTTATGGGGAATTTGTAGCTAGGATGGTATAATTCTGGTATTTGATGACATTTGCCCTAAAGAAATTAATTTGTGACTGTCTGATTGAAATGTCACACGAGTTAGTCTTTTCATATTGATCCATCATGCTAGATTCAATAGTTTGTTTATTAAGTATTTTGTTCTGGAGGGGATGGGGTGTGTTTGTGTGCGTGCATGCATACACACACTGATTTACCATTTAGTTAGCAGACAAGGGGAAACTATAGAGGAGGTAGAAGATTGTTTTTCAAATGGACATCCCTATAAGATGTCAACAGGTTGCGTGTAAGGAACTGATATTTATGGATTTTGAAGCTTTACGGGTATATGTGATGCACTGATCACCGTTGTTTTATTGGAAAACTTTATTTTGATGTTGCTTTCTAAATTAAGTTTCTTGATTTGTATGTGCTTCTTACGAACAAGTGTATGATTGTTGTCCAGATATGCAAAATATACAATAACATCTCTGGAGAAAATGTACAAACCCAAACTCTTTGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTACAAGTATTATCCTCGGTCCCTTTAATAAATTTCAATACATATACATCAATGAATAATGCTGAATGAGTAGGTCTGATGAACCCTTTTTGTACAGTCCTCCCAGTGTCCGCCCACCTCTTGCTCCTGAAGATGAAGATTTATTGCGAGATGATGAAGCTGTTACTCCTTTGAAAAAAGATGGTATTAAAAGAAAAGAGAGACCTACTGATAAAGGTGTGGCATGGCTTGTTAAAACGCAATATATATCTCCTTTAAGCATGGAATCGGCTAAACAGGTATTAGGCATATATGTTGATATAGGGATGAATTGCTATCTCTACAACCAACAACTTATAAACATATTATTGTAGTCCTTAACTGAAAAACAAGCTAAGGAGCTTAGAGAGAAGAAGGGAGGCCGCAGTCTTCTGGAAAATCTTAACAATAGGTATGTATATGCCAGCTTATCTATCCAAAGTCAATTTTAGACATAAATTAATTTGCAGAAGTAATTATCGTTGTCTAACTTGTTATTGTATTCTCTCTTTTAGGGAAAGACGAATGAGGGAAATCGAAGCATCATTTGAAATAGCTAAGTCACAACCTGTTCATGCAACTAAAAAAGAGTTGTATCCTGTTGAGTTTATGCCATTGTTGCCTGATTTTGATAGGTATGGCTCCATATATACCTTTCATAAGTCATGTTATTACTTAGTGTGTTCTATTAATCACCCATTTTTTTGTTGTATGGAAATCCAATCTTTTGATACTGTAAGCGCAAACTGCTTCACAGCATTCATATATTTGTTCATATTAATTAAGTTATTGTTTATTGTTCTGCTTGGCAGGTACGATGATCAGTTTGTCATTGCTGCATTTGATAATGCTCCAACGGTTGATTCAGAAGTGTACAATAAGTTGGACAAATCTGTTCGTGATATCTCTGAATCAAGGGTAAGCTATGTTGCAGTGATGCATGTAGTCTTCATCAGTAACTCTATTCTTTTTGCCTGTTTCATGAAGTTTAAAATCCAGGAAATCCTGGGAAAAGATATGAAAGTAATACAGTAGACGGTATAAAAAGGAATTGCATTGTTACTATAACCAATTGTAAATCTATATTCATTAAATGTCTTCTTAATTTGCTCTTGTAGTTTGACTTACTATGTAGTGGAGTGGAACTATACTTTTGAAATATTGTCTATAAGGTTGTTTACTTGGTAGGATAGTCATTGACTCAATTGCACTATTAGTGTTCAATTAAAATGAGAAATCCTGTATGATAAATCCCATTACTGATATAGTTTTTGGTCGTTAATTTCATACTTGATTGGTGTTCTTCCGGTTACGTATGTGTTTTTCAAGTAACGACTTATGAAATATATAAGTGGTTGTTTTTTGGTTACACTCTCGATCAATGGGGTTGGCTGCTGAATGTTGTTAGGTTGACTCCTATTATTTTGTGGTTTGCAGGCAGTAATGAAAAGTTATGTTGCATCAAGCTCAGATCCTGCAAATCCTGAGAAATTTTTGGCATACATGGTCCCACAGCCAGGAGAGGTATGCATTACATGTGACTGGATTCCAAATTTGAAGTACTGGTTATTTAAAAAAAAAAAACTGTGACTAACATTTGGGCTTATATAAACTTCGTTATGGGCTTATATAAACTTCGTTATGGCAGTTGTCTAAAGATATATATGATGAAGATGAAGACGTCTCTTATTCTTGGGTTCGCGAGTATCATTGGGATGTATGTCCGAATATTTTCAAAATTCCATTCATTAACTGCTAAAGAAATTCCCCATTCAACACTTTTCTGACATTTTCTTTCCACTCCTAATCAGGTTCGAGGTGACGATGCAGATGACCCCACAACATTCTTAGTTTCATTTGATGAGTCAGAAGCTCGTTATTTGGTATTTCCTGGAGCCAATGTCTATTTCTTTCTCAGCTTTCCTAGCTTTCCTACTGGCATGCTGTTTCTTACTCATTCAGCATCAACGTGTTAATTTTATAGTAATTTGATGTGCAGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCTAAAGAGGGAAGATCGGGCGATGAGGTTGAGCAATTTCCAGCTCCTTCTAGAGTGACTGTGAGGAGAAGACCAAACGTTGCTGCAATTGAGCTGAAGGATTCTGAGGTACGGCAATCATTTTATCTTTAAGCTTGCCATTTTATTTGAATTTGCGAAATAATTCCCTATATATGTGTTCCTTTCAAGGTTTATACAAGGTTAAAGGGCAATTCGTCAAAGAGCCTAGACATGGATGACGATCTCGACGACCAACATGGGGATGCAGATCACCATGATAACTTCCAATCTAGTGGAGCAGAAGATGAAATGTCTGAATGA

Protein sequence

>MS.gene072221.t1

MASYRPFPPPASQNPIAPPPPPPQQRPSNWGAYGYGGVVDLPPQNSNFQHHQHQIQHHHVPHAPPPPPPSNYYPYQPPPPPPPPDNSYQPPPPPPGSMYYPSNNNNNQYNHQQQQQQQPPPPPPPGSSMPPPPPPPASPPPPPPTNNEVERVVNKGSLGKRERDGVSHSHKQHQKSSHAHLPRRVETEEEKRMRKKKEYEKHRQEEKHRHQQKQLKESQNSVLQKTQMVSSGGAGKVHGSIAGSRMGDKRATPLLGGERVENRLKKPTTFLLLTILYLYSHPRFRNELPDPTAQPKLMAFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEDLLRDDEAVTPLKKDGIKRKERPTDKGVAWLVKTQYISPLSMESAKQSLTEKQAKELREKKGGRSLLENLNNRERRMREIEASFEIAKSQPVHATKKELYPVEFMPLLPDFDRYDDQFVIAAFDNAPTVDSEVYNKLDKSVRDISESRAVMKSYVASSSDPANPEKFLAYMVPQPGELSKDIYDEDEDVSYSWVREYHWDVRGDDADDPTTFLVSFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQFPAPSRVTVRRRPNVAAIELKDSEVYTRLKGNSSKSLDMDDDLDDQHGDADHHDNFQSSGAEDEMSE