Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00182.t1 | XP_003594777.1 | 100 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 6.30E-64 | 253.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00182.t1 | Q6NLH0 | 88.6 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 6.2e-60 | 231.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00182.t1 | Q2HU21 | 100.0 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 4.6e-64 | 253.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00182.t1 | MTR_2g034520 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 2.49e-84 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00182.t1 | AT3G16980 | 88.596 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 2.12e-76 | 221 |
| MS.gene00182.t1 | AT4G16265 | 87.719 | 114 | 14 | 0 | 1 | 114 | 1 | 114 | 2.88e-76 | 221 |
| MS.gene00182.t1 | AT4G16265 | 86.538 | 104 | 14 | 0 | 11 | 114 | 30 | 133 | 2.60e-68 | 201 |
Find 23 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTCTCTGTCTTCCTT+AGG | 0.297432 | 2.1:-58255399 | None:intergenic |
| CTCCAGCGGTGCCCACAGTT+TGG | 0.305887 | 2.1:-58257819 | None:intergenic |
| TCCAGCGGTGCCCACAGTTT+GGG | 0.321240 | 2.1:-58257818 | None:intergenic |
| TTGAACGCAGCGAACGGCTT+TGG | 0.355771 | 2.1:-58256231 | None:intergenic |
| TGAGCGCACTCAAGTGTTGC+AGG | 0.377539 | 2.1:+58256178 | MS.gene00182:CDS |
| GAACCTGGTGATCGCAATTA+CGG | 0.380587 | 2.1:-58255440 | None:intergenic |
| CCATTCACGGCAAAACTTCA+TGG | 0.428840 | 2.1:-58255286 | None:intergenic |
| ACCCAAACTGTGGGCACCGC+TGG | 0.429710 | 2.1:+58257817 | MS.gene00182:CDS |
| TCTGTTCTCTGTCTTCCTTA+GGG | 0.436557 | 2.1:-58255398 | None:intergenic |
| CGCTGCGTTCAATGCAATCA+TGG | 0.490943 | 2.1:+58256242 | MS.gene00182:CDS |
| TTGCCGTAATTGCGATCACC+AGG | 0.509869 | 2.1:+58255437 | MS.gene00182:CDS |
| CGCAATTACGGCAAGCGTAG+AGG | 0.511532 | 2.1:-58255428 | None:intergenic |
| GAGTAGGAACGAACCATTCA+CGG | 0.528356 | 2.1:-58255299 | None:intergenic |
| GCTTTGGTGCGAGGAAGTGT+TGG | 0.554939 | 2.1:-58256215 | None:intergenic |
| CAGCGAACGGCTTTGGTGCG+AGG | 0.559451 | 2.1:-58256224 | None:intergenic |
| GCAACTGCTAGAGGCGAGGA+AGG | 0.564765 | 2.1:+58257768 | MS.gene00182:CDS |
| GTTTGCTGCAACCCAAACTG+TGG | 0.577890 | 2.1:+58257807 | MS.gene00182:CDS |
| ATTGCATTGAACGCAGCGAA+CGG | 0.596659 | 2.1:-58256237 | None:intergenic |
| TTTGCTGCAACCCAAACTGT+GGG | 0.598453 | 2.1:+58257808 | MS.gene00182:CDS |
| TAACAACATTCTGTACCCTA+AGG | 0.599627 | 2.1:+58255383 | MS.gene00182:CDS |
| CATATGCAGGCAACTGCTAG+AGG | 0.615188 | 2.1:+58257759 | MS.gene00182:intron |
| GCAGGCAACTGCTAGAGGCG+AGG | 0.653952 | 2.1:+58257764 | MS.gene00182:intron |
| ACAAAACTCAGTCTCTCCAG+CGG | 0.698214 | 2.1:-58257833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTTCTTTTTAG+TGG | + | chr2.1:58257125-58257144 | MS.gene00182:intron | 10.0% |
| !! | AAACTCAAAAAACAAAAAAT+GGG | - | chr2.1:58255509-58255528 | None:intergenic | 15.0% |
| !! | AATTTAGAAAGCAAAAAAAA+TGG | - | chr2.1:58255346-58255365 | None:intergenic | 15.0% |
| !! | ATTTAGAAAGCAAAAAAAAT+GGG | - | chr2.1:58255345-58255364 | None:intergenic | 15.0% |
| !!! | AGAATGAATTTAAAACATAT+TGG | - | chr2.1:58257317-58257336 | None:intergenic | 15.0% |
| !!! | TAATTTGTTTAAGTTTTGTT+GGG | + | chr2.1:58255761-58255780 | MS.gene00182:intron | 15.0% |
| !!! | TTGTTTTCACAAAAATATTA+TGG | + | chr2.1:58255901-58255920 | MS.gene00182:intron | 15.0% |
| !!! | TTTCCTTTTTTTTTTTTTTG+TGG | - | chr2.1:58257433-58257452 | None:intergenic | 15.0% |
| !!! | TTTGCTTTTCATTTATTTTT+TGG | + | chr2.1:58256313-58256332 | MS.gene00182:intron | 15.0% |
| !! | AAACCTTATTCTATTACTTA+TGG | + | chr2.1:58257715-58257734 | MS.gene00182:intron | 20.0% |
| !! | AACTCAAAAAACAAAAAATG+GGG | - | chr2.1:58255508-58255527 | None:intergenic | 20.0% |
| !! | AATTAGGGTTTAACAAAATA+TGG | + | chr2.1:58255675-58255694 | MS.gene00182:intron | 20.0% |
| !! | ATTAGGGTTTAACAAAATAT+GGG | + | chr2.1:58255676-58255695 | MS.gene00182:intron | 20.0% |
| !! | CAAACTCAAAAAACAAAAAA+TGG | - | chr2.1:58255510-58255529 | None:intergenic | 20.0% |
| !! | TCACCACAAAAAAAAAAAAA+AGG | + | chr2.1:58257427-58257446 | MS.gene00182:intron | 20.0% |
| !!! | AATTTTTTATATGCATATGC+AGG | + | chr2.1:58257746-58257765 | MS.gene00182:intron | 20.0% |
| !!! | CATTTTTTGTTTTTTGAGTT+TGG | + | chr2.1:58255508-58255527 | MS.gene00182:intron | 20.0% |
| !!! | CTAATTTGTTTAAGTTTTGT+TGG | + | chr2.1:58255760-58255779 | MS.gene00182:intron | 20.0% |
| !!! | TATTGTCTTTATCTTGTTTT+TGG | + | chr2.1:58256980-58256999 | MS.gene00182:intron | 20.0% |
| ! | AAAAATGCATTCATAAGAGT+AGG | - | chr2.1:58257667-58257686 | None:intergenic | 25.0% |
| ! | AAAATATTATGGAGAGCTTA+TGG | + | chr2.1:58255912-58255931 | MS.gene00182:intron | 25.0% |
| ! | AAAATGCATTCATAAGAGTA+GGG | - | chr2.1:58257666-58257685 | None:intergenic | 25.0% |
| ! | AAAGCAAAAAAAATGGGTAA+AGG | - | chr2.1:58255339-58255358 | None:intergenic | 25.0% |
| ! | AACAAGCATATGTCATATAA+AGG | - | chr2.1:58256062-58256081 | None:intergenic | 25.0% |
| ! | AAGCAAAAAAAATGGGTAAA+GGG | - | chr2.1:58255338-58255357 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAGTAGTTTA+TGG | + | chr2.1:58255936-58255955 | MS.gene00182:intron | 25.0% |
| ! | AATTCCAATATGAATTGTTG+AGG | + | chr2.1:58256868-58256887 | MS.gene00182:intron | 25.0% |
| ! | ACAAGATAAAGACAATAGAA+AGG | - | chr2.1:58256977-58256996 | None:intergenic | 25.0% |
| ! | ATAATCTATCTACAACATTC+AGG | - | chr2.1:58256634-58256653 | None:intergenic | 25.0% |
| ! | ATTCCAATATGAATTGTTGA+GGG | + | chr2.1:58256869-58256888 | MS.gene00182:intron | 25.0% |
| ! | GATCCATAAGTAATAGAATA+AGG | - | chr2.1:58257721-58257740 | None:intergenic | 25.0% |
| ! | GGATAAGTAGATTAATTTAG+TGG | + | chr2.1:58255782-58255801 | MS.gene00182:intron | 25.0% |
| !! | ATAGGGTACATTTTATCAAA+AGG | + | chr2.1:58255841-58255860 | MS.gene00182:intron | 25.0% |
| !! | TTGATAACTTATTATAGTCC+TGG | - | chr2.1:58256849-58256868 | None:intergenic | 25.0% |
| !! | TTGTTTGACTAGTTGTTTAT+TGG | + | chr2.1:58256077-58256096 | MS.gene00182:intron | 25.0% |
| !!! | AAAAAACGTCTTTGTTTTGA+AGG | + | chr2.1:58256541-58256560 | MS.gene00182:intron | 25.0% |
| !!! | ATGGGGTTTTTTATTATACA+CGG | - | chr2.1:58255491-58255510 | None:intergenic | 25.0% |
| !!! | ATTTCTTCATTGCTTTTGAA+AGG | - | chr2.1:58257633-58257652 | None:intergenic | 25.0% |
| !!! | ATTTTGACTTTGAATTAGAG+TGG | + | chr2.1:58256377-58256396 | MS.gene00182:intron | 25.0% |
| !!! | CATTATTAGCTTATTTTGAG+TGG | + | chr2.1:58255585-58255604 | MS.gene00182:intron | 25.0% |
| !!! | TTTCTTCATTGCTTTTGAAA+GGG | - | chr2.1:58257632-58257651 | None:intergenic | 25.0% |
| !!! | TTTTCTGCTGCTTAAAAAAA+GGG | + | chr2.1:58256718-58256737 | MS.gene00182:intron | 25.0% |
| !!! | TTTTTCTGCTGCTTAAAAAA+AGG | + | chr2.1:58256717-58256736 | MS.gene00182:intron | 25.0% |
| !!! | TTTTTTGGTTTTAGAAGTTG+TGG | + | chr2.1:58256328-58256347 | MS.gene00182:intron | 25.0% |
| AAAAGTAATGTGGATATGTC+AGG | + | chr2.1:58257556-58257575 | MS.gene00182:intron | 30.0% | |
| AAGTTATAGAGGGTTTATGA+AGG | + | chr2.1:58255632-58255651 | MS.gene00182:intron | 30.0% | |
| AGTTATAGAGGGTTTATGAA+GGG | + | chr2.1:58255633-58255652 | MS.gene00182:intron | 30.0% | |
| ATGACTATTGTATAGATGCT+AGG | + | chr2.1:58256911-58256930 | MS.gene00182:intron | 30.0% | |
| ATTATACACGGCAATGATTT+GGG | - | chr2.1:58255479-58255498 | None:intergenic | 30.0% | |
| CATAGTAGGTAAGCTTAAAT+AGG | + | chr2.1:58256022-58256041 | MS.gene00182:intron | 30.0% | |
| GAATATACGAAGGTTTCATA+GGG | + | chr2.1:58257187-58257206 | MS.gene00182:intron | 30.0% | |
| GTATCTCTCATATGTTGAAT+AGG | + | chr2.1:58257337-58257356 | MS.gene00182:intron | 30.0% | |
| TAACCCTCAACAATTCATAT+TGG | - | chr2.1:58256875-58256894 | None:intergenic | 30.0% | |
| TAGCGTAAATGAATATACGA+AGG | + | chr2.1:58257177-58257196 | MS.gene00182:intron | 30.0% | |
| TATTATACACGGCAATGATT+TGG | - | chr2.1:58255480-58255499 | None:intergenic | 30.0% | |
| TCACAAGTACTTATCATAGT+AGG | + | chr2.1:58256008-58256027 | MS.gene00182:intron | 30.0% | |
| TGAATATACGAAGGTTTCAT+AGG | + | chr2.1:58257186-58257205 | MS.gene00182:intron | 30.0% | |
| TGTGTATAGTGAGTGAATAA+AGG | - | chr2.1:58257518-58257537 | None:intergenic | 30.0% | |
| TTAAATAGGACAATCCTAAG+AGG | + | chr2.1:58256036-58256055 | MS.gene00182:intron | 30.0% | |
| TTTGTGGTGAAGAACTAATT+TGG | - | chr2.1:58257417-58257436 | None:intergenic | 30.0% | |
| ! | ATGTTGAATAGGTAACGTTT+TGG | + | chr2.1:58257348-58257367 | MS.gene00182:intron | 30.0% |
| ! | CATGTAAGTGCTTTTGTATA+GGG | + | chr2.1:58255824-58255843 | MS.gene00182:intron | 30.0% |
| ! | TCATGTAAGTGCTTTTGTAT+AGG | + | chr2.1:58255823-58255842 | MS.gene00182:intron | 30.0% |
| ! | TTGTGTTGCTAAGTTATAGA+GGG | + | chr2.1:58255622-58255641 | MS.gene00182:intron | 30.0% |
| ! | TTTGTGTTGCTAAGTTATAG+AGG | + | chr2.1:58255621-58255640 | MS.gene00182:intron | 30.0% |
| ! | TTTTCATGCTAAGTGATAAG+TGG | + | chr2.1:58256570-58256589 | MS.gene00182:intron | 30.0% |
| !! | ATATCCACATTACTTTTAGC+GGG | - | chr2.1:58257553-58257572 | None:intergenic | 30.0% |
| !! | CATATCCACATTACTTTTAG+CGG | - | chr2.1:58257554-58257573 | None:intergenic | 30.0% |
| !! | TTCTTCATTGCTTTTGAAAG+GGG | - | chr2.1:58257631-58257650 | None:intergenic | 30.0% |
| !!! | GGTTTTTTTGTTCGTTTTGA+AGG | + | chr2.1:58255709-58255728 | MS.gene00182:intron | 30.0% |
| !!! | TGTTGTTGTTTTTGTTGTTC+AGG | + | chr2.1:58256103-58256122 | MS.gene00182:intron | 30.0% |
| !!! | TTTTTTGTTCGTTTTGAAGG+TGG | + | chr2.1:58255712-58255731 | MS.gene00182:intron | 30.0% |
| AATCTCCATTGTAGTGTTCA+TGG | + | chr2.1:58257073-58257092 | MS.gene00182:intron | 35.0% | |
| AATTAGAGTGGTAGAGTCAT+GGG | + | chr2.1:58256389-58256408 | MS.gene00182:intron | 35.0% | |
| ACTATTGTATAGATGCTAGG+AGG | + | chr2.1:58256914-58256933 | MS.gene00182:intron | 35.0% | |
| ACTCACTTCTTCACAAACTA+AGG | - | chr2.1:58256503-58256522 | None:intergenic | 35.0% | |
| AGAAATGTCATTGAGCAACT+TGG | - | chr2.1:58257486-58257505 | None:intergenic | 35.0% | |
| AGTCAAAATCAAGAGTGACT+TGG | - | chr2.1:58256366-58256385 | None:intergenic | 35.0% | |
| ATGTCATATAAAGGCCTCTT+AGG | - | chr2.1:58256053-58256072 | None:intergenic | 35.0% | |
| ATTGTAGTGTTCATGGTTCT+AGG | + | chr2.1:58257080-58257099 | MS.gene00182:intron | 35.0% | |
| CTCACTTCTTCACAAACTAA+GGG | - | chr2.1:58256502-58256521 | None:intergenic | 35.0% | |
| GGAAATTGAAATAACGAACC+TGG | - | chr2.1:58255458-58255477 | None:intergenic | 35.0% | |
| GTCAAAATCAAGAGTGACTT+GGG | - | chr2.1:58256365-58256384 | None:intergenic | 35.0% | |
| TAACAACATTCTGTACCCTA+AGG | + | chr2.1:58255383-58255402 | MS.gene00182:CDS | 35.0% | |
| TAGAACCATGAACACTACAA+TGG | - | chr2.1:58257081-58257100 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr2.1:58256818-58256837 | None:intergenic | 35.0% | |
| ! | ATTTAAAGCTGAACTTGTGG+TGG | - | chr2.1:58257040-58257059 | None:intergenic | 35.0% |
| ! | CAAAATATGGGTCACTTTGT+TGG | + | chr2.1:58255688-58255707 | MS.gene00182:intron | 35.0% |
| ! | GACATTTAAAGCTGAACTTG+TGG | - | chr2.1:58257043-58257062 | None:intergenic | 35.0% |
| ! | TTGAGGGTTATAAAGTGTCA+CGG | + | chr2.1:58256885-58256904 | MS.gene00182:intron | 35.0% |
| !! | AAACAGCTTTGAAGAGCTTA+TGG | - | chr2.1:58255989-58256008 | None:intergenic | 35.0% |
| !! | CAAGTTCAGCTTTAAATGTC+AGG | + | chr2.1:58257043-58257062 | MS.gene00182:intron | 35.0% |
| !! | TATCTACAACATTCAGGTTG+CGG | - | chr2.1:58256628-58256647 | None:intergenic | 35.0% |
| !! | TTTTGAAGGTGGTGTTGAAA+GGG | + | chr2.1:58255723-58255742 | MS.gene00182:intron | 35.0% |
| !!! | GACTCTTGAGCTTTATTTTG+TGG | + | chr2.1:58256430-58256449 | MS.gene00182:intron | 35.0% |
| !!! | TGTTGTTTTTGTTGTTCAGG+AGG | + | chr2.1:58256106-58256125 | MS.gene00182:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr2.1:58256817-58256836 | MS.gene00182:intron | 35.0% |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr2.1:58256824-58256843 | None:intergenic | 40.0% | |
| AGAAGTGAGTCGTAGAAAGA+AGG | + | chr2.1:58256513-58256532 | MS.gene00182:intron | 40.0% | |
| ATTAGAGTGGTAGAGTCATG+GGG | + | chr2.1:58256390-58256409 | MS.gene00182:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr2.1:58256823-58256842 | None:intergenic | 40.0% | |
| CAGGTAAAGTCACTGTTCTA+TGG | + | chr2.1:58256281-58256300 | MS.gene00182:intron | 40.0% | |
| CATAGAACAGTGACTTTACC+TGG | - | chr2.1:58256283-58256302 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr2.1:58256792-58256811 | None:intergenic | 40.0% | |
| GAATTAGAGTGGTAGAGTCA+TGG | + | chr2.1:58256388-58256407 | MS.gene00182:intron | 40.0% | |
| GTAATGTGGATATGTCAGGT+AGG | + | chr2.1:58257560-58257579 | MS.gene00182:intron | 40.0% | |
| GTGCAATCTGTCAAACAGTT+TGG | + | chr2.1:58257271-58257290 | MS.gene00182:intron | 40.0% | |
| TCTGTTCTCTGTCTTCCTTA+GGG | - | chr2.1:58255401-58255420 | None:intergenic | 40.0% | |
| TGCTTAAAAAAAGGGCAACC+CGG | + | chr2.1:58256726-58256745 | MS.gene00182:intron | 40.0% | |
| TTCTGTTCTCTGTCTTCCTT+AGG | - | chr2.1:58255402-58255421 | None:intergenic | 40.0% | |
| TTTAGAAGTTGTGGACGAGA+GGG | + | chr2.1:58256337-58256356 | MS.gene00182:intron | 40.0% | |
| ! | TTTGAAGGTGGTGTTGAAAG+GGG | + | chr2.1:58255724-58255743 | MS.gene00182:intron | 40.0% |
| !! | ATCTACAACATTCAGGTTGC+GGG | - | chr2.1:58256627-58256646 | None:intergenic | 40.0% |
| !! | TTTTAGAAGTTGTGGACGAG+AGG | + | chr2.1:58256336-58256355 | MS.gene00182:intron | 40.0% |
| !!! | GTTTTGAAGGTGGTGTTGAA+AGG | + | chr2.1:58255722-58255741 | MS.gene00182:intron | 40.0% |
| ATTGCATTGAACGCAGCGAA+CGG | - | chr2.1:58256240-58256259 | None:intergenic | 45.0% | |
| CCATAGCTGAACCTAAACAC+TGG | + | chr2.1:58257460-58257479 | MS.gene00182:intron | 45.0% | |
| CCATTCACGGCAAAACTTCA+TGG | - | chr2.1:58255289-58255308 | None:intergenic | 45.0% | |
| CTATGACTCAGTTAGACTGG+CGG | + | chr2.1:58257242-58257261 | MS.gene00182:intron | 45.0% | |
| GAACCTGGTGATCGCAATTA+CGG | - | chr2.1:58255443-58255462 | None:intergenic | 45.0% | |
| GAGTAGGAACGAACCATTCA+CGG | - | chr2.1:58255302-58255321 | None:intergenic | 45.0% | |
| GCCAGTCTAACTGAGTCATA+GGG | - | chr2.1:58257243-58257262 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr2.1:58256793-58256812 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr2.1:58256796-58256815 | None:intergenic | 45.0% | |
| GGGAAGAAGATGAAGAGAGT+AGG | - | chr2.1:58255318-58255337 | None:intergenic | 45.0% | |
| TCCCTATGACTCAGTTAGAC+TGG | + | chr2.1:58257239-58257258 | MS.gene00182:intron | 45.0% | |
| TCTGCCCGCTAAAAGTAATG+TGG | + | chr2.1:58257546-58257565 | MS.gene00182:intron | 45.0% | |
| TTTGCTGCAACCCAAACTGT+GGG | + | chr2.1:58257808-58257827 | MS.gene00182:CDS | 45.0% | |
| ! | CCAGTGTTTAGGTTCAGCTA+TGG | - | chr2.1:58257463-58257482 | None:intergenic | 45.0% |
| ! | CCATGAAGTTTTGCCGTGAA+TGG | + | chr2.1:58255286-58255305 | MS.gene00182:CDS | 45.0% |
| ! | TGGTGAAGCTGTGTTTTTCC+AGG | + | chr2.1:58256262-58256281 | MS.gene00182:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr2.1:58256828-58256847 | MS.gene00182:intron | 45.0% |
| !!! | AAAATTATTTTTTTAGAATT+AGG | + | chr2.1:58255659-58255678 | MS.gene00182:intron | 5.0% |
| !!! | AAATTATTTTTTTAGAATTA+GGG | + | chr2.1:58255660-58255679 | MS.gene00182:intron | 5.0% |
| CATATGCAGGCAACTGCTAG+AGG | + | chr2.1:58257759-58257778 | MS.gene00182:intron | 50.0% | |
| CGCCAGTCTAACTGAGTCAT+AGG | - | chr2.1:58257244-58257263 | None:intergenic | 50.0% | |
| CGCTGCGTTCAATGCAATCA+TGG | + | chr2.1:58256242-58256261 | MS.gene00182:CDS | 50.0% | |
| GAGCAACTTGGCCAGTGTTT+AGG | - | chr2.1:58257474-58257493 | None:intergenic | 50.0% | |
| TTGCCGTAATTGCGATCACC+AGG | + | chr2.1:58255437-58255456 | MS.gene00182:CDS | 50.0% | |
| ! | GTTTGCTGCAACCCAAACTG+TGG | + | chr2.1:58257807-58257826 | MS.gene00182:CDS | 50.0% |
| CGCAATTACGGCAAGCGTAG+AGG | - | chr2.1:58255431-58255450 | None:intergenic | 55.0% | |
| TTGAACGCAGCGAACGGCTT+TGG | - | chr2.1:58256234-58256253 | None:intergenic | 55.0% | |
| ! | GCTTTGGTGCGAGGAAGTGT+TGG | - | chr2.1:58256218-58256237 | None:intergenic | 55.0% |
| ! | TGAGCGCACTCAAGTGTTGC+AGG | + | chr2.1:58256178-58256197 | MS.gene00182:CDS | 55.0% |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr2.1:58256752-58256771 | MS.gene00182:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr2.1:58256748-58256767 | None:intergenic | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr2.1:58256753-58256772 | MS.gene00182:intron | 60.0% | |
| GCAACTGCTAGAGGCGAGGA+AGG | + | chr2.1:58257768-58257787 | MS.gene00182:CDS | 60.0% | |
| TCCAGCGGTGCCCACAGTTT+GGG | - | chr2.1:58257821-58257840 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr2.1:58256780-58256799 | None:intergenic | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr2.1:58256765-58256784 | MS.gene00182:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr2.1:58256778-58256797 | MS.gene00182:intron | 65.0% | |
| CTCCAGCGGTGCCCACAGTT+TGG | - | chr2.1:58257822-58257841 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr2.1:58256765-58256784 | None:intergenic | 65.0% | |
| GCAGGCAACTGCTAGAGGCG+AGG | + | chr2.1:58257764-58257783 | MS.gene00182:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr2.1:58256764-58256783 | MS.gene00182:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr2.1:58256747-58256766 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr2.1:58256764-58256783 | None:intergenic | 65.0% | |
| ! | ACCCAAACTGTGGGCACCGC+TGG | + | chr2.1:58257817-58257836 | MS.gene00182:CDS | 65.0% |
| ! | CAGCGAACGGCTTTGGTGCG+AGG | - | chr2.1:58256227-58256246 | None:intergenic | 65.0% |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr2.1:58256763-58256782 | MS.gene00182:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr2.1:58256759-58256778 | MS.gene00182:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr2.1:58256758-58256777 | MS.gene00182:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 58255279 | 58257848 | 58255279 | ID=MS.gene00182 |
| chr2.1 | mRNA | 58255279 | 58257848 | 58255279 | ID=MS.gene00182.t1;Parent=MS.gene00182 |
| chr2.1 | exon | 58255279 | 58255307 | 58255279 | ID=MS.gene00182.t1.exon1;Parent=MS.gene00182.t1 |
| chr2.1 | CDS | 58255279 | 58255307 | 58255279 | ID=cds.MS.gene00182.t1;Parent=MS.gene00182.t1 |
| chr2.1 | exon | 58255383 | 58255458 | 58255383 | ID=MS.gene00182.t1.exon2;Parent=MS.gene00182.t1 |
| chr2.1 | CDS | 58255383 | 58255458 | 58255383 | ID=cds.MS.gene00182.t1;Parent=MS.gene00182.t1 |
| chr2.1 | exon | 58256125 | 58256283 | 58256125 | ID=MS.gene00182.t1.exon3;Parent=MS.gene00182.t1 |
| chr2.1 | CDS | 58256125 | 58256283 | 58256125 | ID=cds.MS.gene00182.t1;Parent=MS.gene00182.t1 |
| chr2.1 | exon | 58257768 | 58257848 | 58257768 | ID=MS.gene00182.t1.exon4;Parent=MS.gene00182.t1 |
| chr2.1 | CDS | 58257768 | 58257848 | 58257768 | ID=cds.MS.gene00182.t1;Parent=MS.gene00182.t1 |
| Gene Sequence |
| Protein sequence |