Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013499.t1 | XP_003602382.1 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.10E-63 | 249.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013499.t1 | Q94C60 | 80.0 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 5.7e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013499.t1 | G7J900 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 5.1e-63 | 249.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06606 | MS.gene013499 | PPI |
| MS.gene42075 | MS.gene013499 | PPI |
| MS.gene87743 | MS.gene013499 | PPI |
| MS.gene87064 | MS.gene013499 | PPI |
| MS.gene77045 | MS.gene013499 | PPI |
| MS.gene013499 | MS.gene82237 | PPI |
| MS.gene057248 | MS.gene013499 | PPI |
| MS.gene06819 | MS.gene013499 | PPI |
| MS.gene48819 | MS.gene013499 | PPI |
| MS.gene76728 | MS.gene013499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013499.t1 | MTR_3g092730 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| MS.gene013499.t1 | MTR_3g092770 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013499.t1 | AT5G63670 | 80.000 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 2.36e-69 | 203 |
| MS.gene013499.t1 | AT5G08565 | 77.391 | 115 | 26 | 0 | 1 | 115 | 1 | 115 | 4.94e-66 | 195 |
| MS.gene013499.t1 | AT5G08565 | 66.087 | 115 | 39 | 0 | 1 | 115 | 1 | 115 | 1.25e-51 | 159 |
| MS.gene013499.t1 | AT5G63670 | 87.342 | 79 | 10 | 0 | 1 | 79 | 1 | 79 | 1.27e-49 | 153 |
Find 29 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGACAAACCCGTTAAAAT+TGG | 0.240208 | 3.4:-84787052 | None:intergenic |
| GAACGTTTGGGAAGCGTATA+TGG | 0.267594 | 3.4:-84790272 | None:intergenic |
| TTACTTGTTTCACGAACGTT+TGG | 0.361888 | 3.4:-84790285 | None:intergenic |
| TTTCAGGATCATTTCTGTAA+TGG | 0.372050 | 3.4:+84787152 | MS.gene013499:intron |
| AGGACAAACCCGTTAAAATT+GGG | 0.387784 | 3.4:-84787051 | None:intergenic |
| GGTTTGCAGTTTAGGGAGTC+AGG | 0.390331 | 3.4:+84786964 | MS.gene013499:intron |
| AATTCATGTCCAAAGCTTGT+AGG | 0.398605 | 3.4:-84786546 | None:intergenic |
| GCTCAAATTCCTACAAGCTT+TGG | 0.399271 | 3.4:+84786537 | MS.gene013499:CDS |
| TAATGGATCCAACTCGAAGC+TGG | 0.437009 | 3.4:+84787169 | MS.gene013499:CDS |
| CATACCAACGCGCAACCAAC+GGG | 0.439614 | 3.4:-84787196 | None:intergenic |
| GTTGCAGGAAAATTTGTTCC+TGG | 0.441087 | 3.4:+84789555 | MS.gene013499:intron |
| CTCGAAGCTGGGCCGCCCGT+TGG | 0.457054 | 3.4:+84787181 | MS.gene013499:CDS |
| AAGCTTTGGACATGAATTGA+GGG | 0.465856 | 3.4:+84786551 | MS.gene013499:CDS |
| ATACAAACCTGCATATCGTC+TGG | 0.468215 | 3.4:-84789609 | None:intergenic |
| TACTTGTTTCACGAACGTTT+GGG | 0.492974 | 3.4:-84790284 | None:intergenic |
| GGCTCTTCCAGACGATATGC+AGG | 0.493041 | 3.4:+84789602 | MS.gene013499:CDS |
| CAAGCTTTGGACATGAATTG+AGG | 0.494858 | 3.4:+84786550 | MS.gene013499:CDS |
| CCTTGTCAAAACCTACGATC+AGG | 0.523824 | 3.4:+84786590 | MS.gene013499:CDS |
| GCCGCCCGTTGGTTGCGCGT+TGG | 0.539318 | 3.4:+84787192 | MS.gene013499:CDS |
| CGGGCGGCCCAGCTTCGAGT+TGG | 0.547586 | 3.4:-84787177 | None:intergenic |
| ACATACCAACGCGCAACCAA+CGG | 0.564887 | 3.4:-84787197 | None:intergenic |
| AATGGATCCAACTCGAAGCT+GGG | 0.572441 | 3.4:+84787170 | MS.gene013499:CDS |
| GGACAAACCCGTTAAAATTG+GGG | 0.590799 | 3.4:-84787050 | None:intergenic |
| AAGCTTGTAGGAATTTGAGC+AGG | 0.591537 | 3.4:-84786534 | None:intergenic |
| TTACACTCTTGCTGTCTCAG+AGG | 0.600043 | 3.4:+84789581 | MS.gene013499:CDS |
| ACCAACGCGCAACCAACGGG+CGG | 0.605443 | 3.4:-84787193 | None:intergenic |
| GGTCAGTAAGACCTGATCGT+AGG | 0.658939 | 3.4:-84786601 | None:intergenic |
| ACAGCAAGAGTGTAAACACC+AGG | 0.664978 | 3.4:-84789573 | None:intergenic |
| GACAAACCCGTTAAAATTGG+GGG | 0.690023 | 3.4:-84787049 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATTATAATAATGTAAA+GGG | - | chr3.4:84787284-84787303 | None:intergenic | 10.0% |
| !! | ATAAGTATTATTCAATGTTT+AGG | - | chr3.4:84787768-84787787 | None:intergenic | 15.0% |
| !! | CTATCATTATAATAATGTAA+AGG | - | chr3.4:84787285-84787304 | None:intergenic | 15.0% |
| !! | TTTCAAAATTCAAATTTAAC+TGG | - | chr3.4:84789187-84789206 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTTTGTGTATT+AGG | - | chr3.4:84790121-84790140 | None:intergenic | 15.0% |
| !!! | AATTTGACTTTAGTTTTTTT+TGG | + | chr3.4:84789772-84789791 | MS.gene013499:intron | 15.0% |
| !!! | ATTTGACTTTAGTTTTTTTT+GGG | + | chr3.4:84789773-84789792 | MS.gene013499:intron | 15.0% |
| !!! | TAATACTTATATTTTGTCTA+TGG | + | chr3.4:84787778-84787797 | MS.gene013499:intron | 15.0% |
| !!! | TTTTATTTTCTTTTAAAGTC+TGG | + | chr3.4:84788384-84788403 | MS.gene013499:intron | 15.0% |
| !! | ACCTTTCTTTATAACAAAAA+AGG | - | chr3.4:84789244-84789263 | None:intergenic | 20.0% |
| !! | AGAATTGATTATGACATTAT+TGG | + | chr3.4:84786696-84786715 | MS.gene013499:intron | 20.0% |
| !! | CTAACAAAAATTAAGTTATG+TGG | + | chr3.4:84787673-84787692 | MS.gene013499:intron | 20.0% |
| !! | TATAGTACTGTTTAATGTTT+AGG | + | chr3.4:84788255-84788274 | MS.gene013499:intron | 20.0% |
| !!! | ATAAACTAATGATCTAAGAT+AGG | - | chr3.4:84788829-84788848 | None:intergenic | 20.0% |
| !!! | ATTCTGTAAAATTTTGATTC+TGG | - | chr3.4:84786863-84786882 | None:intergenic | 20.0% |
| !!! | CTTTTATCCATTAATTTAAC+TGG | + | chr3.4:84789818-84789837 | MS.gene013499:intron | 20.0% |
| !!! | GAAGAGTACAAAATTTAATT+AGG | - | chr3.4:84787814-84787833 | None:intergenic | 20.0% |
| !!! | GTTATACAATGTTTTGATTA+TGG | + | chr3.4:84789022-84789041 | MS.gene013499:intron | 20.0% |
| !!! | TCCTTTTTTGTTATAAAGAA+AGG | + | chr3.4:84789240-84789259 | MS.gene013499:intron | 20.0% |
| !!! | TCTAAAATAGAAAAACTAGA+CGG | - | chr3.4:84789465-84789484 | None:intergenic | 20.0% |
| !!! | TTATTCTTTTTCTTTTGCAA+AGG | + | chr3.4:84789864-84789883 | MS.gene013499:intron | 20.0% |
| !!! | TTTGACTTTAGTTTTTTTTG+GGG | + | chr3.4:84789774-84789793 | MS.gene013499:intron | 20.0% |
| ! | AAACAAAATCTGTGTATGTT+TGG | - | chr3.4:84786915-84786934 | None:intergenic | 25.0% |
| ! | ACACATGTAATACATAGATT+TGG | - | chr3.4:84788123-84788142 | None:intergenic | 25.0% |
| ! | ACACATGTAATCCATAAATT+TGG | - | chr3.4:84787550-84787569 | None:intergenic | 25.0% |
| ! | AGAACAATATGGAAAATTAC+TGG | - | chr3.4:84788758-84788777 | None:intergenic | 25.0% |
| ! | ATTCGTATATGCTTCTTATA+AGG | - | chr3.4:84787953-84787972 | None:intergenic | 25.0% |
| ! | GAAATCTCTAGTACTTATTA+TGG | + | chr3.4:84788795-84788814 | MS.gene013499:intron | 25.0% |
| ! | GTGATTTCATGTTAGAATTT+GGG | - | chr3.4:84788908-84788927 | None:intergenic | 25.0% |
| ! | TACTTGATCATTTAACCAAA+AGG | + | chr3.4:84787849-84787868 | MS.gene013499:intron | 25.0% |
| ! | TATCCATTAATTTAACTGGT+CGG | + | chr3.4:84789822-84789841 | MS.gene013499:intron | 25.0% |
| ! | TGATGTAAATAGATATGACA+AGG | - | chr3.4:84787074-84787093 | None:intergenic | 25.0% |
| ! | TGTGATTTCATGTTAGAATT+TGG | - | chr3.4:84788909-84788928 | None:intergenic | 25.0% |
| ! | TTTGCCAATAATGTCTAATA+AGG | + | chr3.4:84788938-84788957 | MS.gene013499:intron | 25.0% |
| ! | TTTGGTTAAATGATCAAGTA+AGG | - | chr3.4:84787849-84787868 | None:intergenic | 25.0% |
| !! | AAGTTTTTCTTATATGTTGC+AGG | + | chr3.4:84789540-84789559 | MS.gene013499:intron | 25.0% |
| !! | ACCTACATCTAAAATGTTTA+AGG | - | chr3.4:84789004-84789023 | None:intergenic | 25.0% |
| !! | TCCTTAAACATTTTAGATGT+AGG | + | chr3.4:84789000-84789019 | MS.gene013499:intron | 25.0% |
| !!! | AATGTTTTGATTATGGAAGA+TGG | + | chr3.4:84789029-84789048 | MS.gene013499:intron | 25.0% |
| !!! | AATTATTGTTTTTGAGAGAG+TGG | - | chr3.4:84789756-84789775 | None:intergenic | 25.0% |
| !!! | ACTTTAGAATCAGATACAAA+TGG | + | chr3.4:84787397-84787416 | MS.gene013499:intron | 25.0% |
| !!! | ATATGTTTGTTTCTCCTTTT+AGG | + | chr3.4:84786649-84786668 | MS.gene013499:intron | 25.0% |
| !!! | ATGTTTTGATTATGGAAGAT+GGG | + | chr3.4:84789030-84789049 | MS.gene013499:intron | 25.0% |
| !!! | ATTACCAGTTTTTAATTCAG+AGG | - | chr3.4:84789280-84789299 | None:intergenic | 25.0% |
| !!! | ATTTTGATTCTGGTTAAAAG+TGG | - | chr3.4:84786853-84786872 | None:intergenic | 25.0% |
| !!! | CTTTAGAATCAGATACAAAT+GGG | + | chr3.4:84787398-84787417 | MS.gene013499:intron | 25.0% |
| !!! | GCAAAGGTGTTAAAAATTTA+GGG | + | chr3.4:84789880-84789899 | MS.gene013499:intron | 25.0% |
| !!! | TATGTTTGTTTCTCCTTTTA+GGG | + | chr3.4:84786650-84786669 | MS.gene013499:intron | 25.0% |
| !!! | TCTTCATCAATTTGATTTTC+AGG | + | chr3.4:84787136-84787155 | MS.gene013499:intron | 25.0% |
| !!! | TGCAAAGGTGTTAAAAATTT+AGG | + | chr3.4:84789879-84789898 | MS.gene013499:intron | 25.0% |
| !!! | TTGACTTTAGTTTTTTTTGG+GGG | + | chr3.4:84789775-84789794 | MS.gene013499:intron | 25.0% |
| !!! | TTTCAACCTTTTGGTTAAAA+GGG | + | chr3.4:84787593-84787612 | MS.gene013499:intron | 25.0% |
| !!! | TTTTGATTCTGGTTAAAAGT+GGG | - | chr3.4:84786852-84786871 | None:intergenic | 25.0% |
| AAAGAAAACTGAAAGGCAAT+GGG | - | chr3.4:84787261-84787280 | None:intergenic | 30.0% | |
| AATCAATAATGTCCCCTAAA+AGG | - | chr3.4:84786666-84786685 | None:intergenic | 30.0% | |
| ACTAAGAATAGTGAGAGAAA+GGG | - | chr3.4:84786629-84786648 | None:intergenic | 30.0% | |
| AGTACCTCTGAATTAAAAAC+TGG | + | chr3.4:84789273-84789292 | MS.gene013499:intron | 30.0% | |
| ATTGAAAATCTCAACTCACA+AGG | - | chr3.4:84789947-84789966 | None:intergenic | 30.0% | |
| CACAAATAGAAAAACAGAGA+CGG | - | chr3.4:84788699-84788718 | None:intergenic | 30.0% | |
| CCAATAATGTCTAATAAGGA+AGG | + | chr3.4:84788942-84788961 | MS.gene013499:intron | 30.0% | |
| CCTTCCTTATTAGACATTAT+TGG | - | chr3.4:84788945-84788964 | None:intergenic | 30.0% | |
| CTGGTCGGATATAAAATATT+TGG | + | chr3.4:84789837-84789856 | MS.gene013499:intron | 30.0% | |
| CTTCTTCCATCTGTAAAAAT+GGG | - | chr3.4:84787002-84787021 | None:intergenic | 30.0% | |
| GATAAGATGATACAAGAGAA+AGG | - | chr3.4:84790153-84790172 | None:intergenic | 30.0% | |
| GATAGTAAGTTCAGATTGTT+GGG | + | chr3.4:84789089-84789108 | MS.gene013499:intron | 30.0% | |
| GTAATCCATAAATTTGGTTG+TGG | - | chr3.4:84787544-84787563 | None:intergenic | 30.0% | |
| GTATTACATGTGTTGAGTTA+TGG | + | chr3.4:84788130-84788149 | MS.gene013499:intron | 30.0% | |
| TAAAGGGAAAGAAAACTGAA+AGG | - | chr3.4:84787268-84787287 | None:intergenic | 30.0% | |
| TACTAAGAATAGTGAGAGAA+AGG | - | chr3.4:84786630-84786649 | None:intergenic | 30.0% | |
| TATAAATAATCCCTGTGTTC+TGG | + | chr3.4:84786943-84786962 | MS.gene013499:intron | 30.0% | |
| TATCCGACCAGTTAAATTAA+TGG | - | chr3.4:84789828-84789847 | None:intergenic | 30.0% | |
| TCTTCTTCCATCTGTAAAAA+TGG | - | chr3.4:84787003-84787022 | None:intergenic | 30.0% | |
| TGATAGTAAGTTCAGATTGT+TGG | + | chr3.4:84789088-84789107 | MS.gene013499:intron | 30.0% | |
| TTGATCAAAACGATTTACGA+CGG | - | chr3.4:84788552-84788571 | None:intergenic | 30.0% | |
| TTTCAGGATCATTTCTGTAA+TGG | + | chr3.4:84787152-84787171 | MS.gene013499:intron | 30.0% | |
| ! | AAGTTATGGATTACATGTGT+TGG | - | chr3.4:84787333-84787352 | None:intergenic | 30.0% |
| ! | AATTTTGCATTCCTCTTTCT+AGG | - | chr3.4:84787631-84787650 | None:intergenic | 30.0% |
| ! | AATTTTGTACTCCTCTTTCT+AGG | - | chr3.4:84788203-84788222 | None:intergenic | 30.0% |
| ! | AGGAGTATATAACCATTTAG+TGG | + | chr3.4:84788962-84788981 | MS.gene013499:intron | 30.0% |
| ! | ATTTTCAATAAATGCCCAAG+TGG | + | chr3.4:84789958-84789977 | MS.gene013499:intron | 30.0% |
| ! | GTAATACATAGATTTGGTTG+TGG | - | chr3.4:84788117-84788136 | None:intergenic | 30.0% |
| ! | TAGTATGTTGTTTACACTCA+TGG | - | chr3.4:84787741-84787760 | None:intergenic | 30.0% |
| ! | TGGTAATGTAATTTAGTGAG+TGG | + | chr3.4:84789293-84789312 | MS.gene013499:intron | 30.0% |
| !! | ATGTTTGTTTCTCCTTTTAG+GGG | + | chr3.4:84786651-84786670 | MS.gene013499:intron | 30.0% |
| !! | GTTTCAACCTTTTGGTTAAA+AGG | + | chr3.4:84787592-84787611 | MS.gene013499:intron | 30.0% |
| !! | TAATTCAGAGGTACTAATAC+AGG | - | chr3.4:84789268-84789287 | None:intergenic | 30.0% |
| !!! | TAGTTTTGTAAGGTTGAGTT+AGG | + | chr3.4:84788877-84788896 | MS.gene013499:intron | 30.0% |
| !!! | TGACTTTAGTTTTTTTTGGG+GGG | + | chr3.4:84789776-84789795 | MS.gene013499:intron | 30.0% |
| AAATGGGAGACAACATTATG+TGG | + | chr3.4:84787414-84787433 | MS.gene013499:intron | 35.0% | |
| AAGGACAAACCCGTTAAAAT+TGG | - | chr3.4:84787055-84787074 | None:intergenic | 35.0% | |
| AATTCATGTCCAAAGCTTGT+AGG | - | chr3.4:84786549-84786568 | None:intergenic | 35.0% | |
| ACTAGAGATTTCTGCCATTA+AGG | - | chr3.4:84788787-84788806 | None:intergenic | 35.0% | |
| AGAAGCTTCAAAGGTGATTA+GGG | - | chr3.4:84787100-84787119 | None:intergenic | 35.0% | |
| AGACAATCTTAAGACTGCAA+GGG | - | chr3.4:84788724-84788743 | None:intergenic | 35.0% | |
| AGAGAGTGGCATAAAAAAAG+AGG | - | chr3.4:84789742-84789761 | None:intergenic | 35.0% | |
| AGCTTCAAGTGAATCAATTC+CGG | - | chr3.4:84786748-84786767 | None:intergenic | 35.0% | |
| AGGACAAACCCGTTAAAATT+GGG | - | chr3.4:84787054-84787073 | None:intergenic | 35.0% | |
| ATGACATTCAGAAGCTTCAA+AGG | - | chr3.4:84787109-84787128 | None:intergenic | 35.0% | |
| ATTATGGAAGATGGGCATAA+AGG | + | chr3.4:84789038-84789057 | MS.gene013499:intron | 35.0% | |
| ATTGTTCTCATCGTCCTTAA+TGG | + | chr3.4:84788770-84788789 | MS.gene013499:intron | 35.0% | |
| CAATCTGAACTTACTATCAC+AGG | - | chr3.4:84789087-84789106 | None:intergenic | 35.0% | |
| CACAAATGAAAATTCTCTCC+AGG | - | chr3.4:84789343-84789362 | None:intergenic | 35.0% | |
| CTAAAGTAGTGCATCTACTA+TGG | - | chr3.4:84787384-84787403 | None:intergenic | 35.0% | |
| CTCAACCACAACCAAATTTA+TGG | + | chr3.4:84787536-84787555 | MS.gene013499:intron | 35.0% | |
| CTCACAAATAGCCTGAAAAT+GGG | - | chr3.4:84790240-84790259 | None:intergenic | 35.0% | |
| GAAAGAAAACTGAAAGGCAA+TGG | - | chr3.4:84787262-84787281 | None:intergenic | 35.0% | |
| GATTACATGTGTTGGAGTTA+TGG | - | chr3.4:84787894-84787913 | None:intergenic | 35.0% | |
| GCATTCACATCTTCTTGTTA+TGG | + | chr3.4:84788058-84788077 | MS.gene013499:intron | 35.0% | |
| GTAATCCATAACTTCGACTA+TGG | + | chr3.4:84787339-84787358 | MS.gene013499:intron | 35.0% | |
| GTAATCCATAACTTCGATTG+TGG | + | chr3.4:84787908-84787927 | MS.gene013499:intron | 35.0% | |
| GTGATTACCAATTCGTACAA+CGG | - | chr3.4:84787444-84787463 | None:intergenic | 35.0% | |
| TAAGGACGATGAGAACAATA+TGG | - | chr3.4:84788769-84788788 | None:intergenic | 35.0% | |
| TAGTACATTCTATACTCTCG+CGG | + | chr3.4:84788282-84788301 | MS.gene013499:intron | 35.0% | |
| TCAAATGCTGTTGAACGAAT+TGG | + | chr3.4:84787989-84788008 | MS.gene013499:intron | 35.0% | |
| TCTCTCATTCACATCTACTA+TGG | + | chr3.4:84787499-84787518 | MS.gene013499:intron | 35.0% | |
| TGGTTAAAAGGGTTCAAGTA+AGG | + | chr3.4:84787604-84787623 | MS.gene013499:intron | 35.0% | |
| TGTCAGATACAACCACTAAA+TGG | - | chr3.4:84788977-84788996 | None:intergenic | 35.0% | |
| TTATGGAAGATGGGCATAAA+GGG | + | chr3.4:84789039-84789058 | MS.gene013499:intron | 35.0% | |
| TTCAACCATAGTCGAAGTTA+TGG | - | chr3.4:84787347-84787366 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGTGATTTGTGTT+TGG | - | chr3.4:84786827-84786846 | None:intergenic | 35.0% |
| ! | CTTGAACCCTTTTAACCAAA+AGG | - | chr3.4:84787602-84787621 | None:intergenic | 35.0% |
| ! | GAAGTGATTTGTGTTTGGAT+AGG | - | chr3.4:84786822-84786841 | None:intergenic | 35.0% |
| ! | GTTCTGTAGTTTCTACCTTT+TGG | - | chr3.4:84787867-84787886 | None:intergenic | 35.0% |
| ! | TAACAATCCGTCAGACTTTT+CGG | + | chr3.4:84788509-84788528 | MS.gene013499:intron | 35.0% |
| !! | AAAAGTCTGACGGATTGTTA+TGG | - | chr3.4:84788509-84788528 | None:intergenic | 35.0% |
| !! | AAGCTTTGGACATGAATTGA+GGG | + | chr3.4:84786551-84786570 | MS.gene013499:CDS | 35.0% |
| !! | AGTTTCAACCTTTTGGTTAG+AGG | + | chr3.4:84788164-84788183 | MS.gene013499:intron | 35.0% |
| !! | CAAGTAGTATTGATTGTCTC+CGG | + | chr3.4:84786726-84786745 | MS.gene013499:intron | 35.0% |
| !! | GTTTCAACCTTTTGGTTAGA+GGG | + | chr3.4:84788165-84788184 | MS.gene013499:intron | 35.0% |
| !! | TTAGGGGACATTATTGATTC+TGG | + | chr3.4:84786667-84786686 | MS.gene013499:intron | 35.0% |
| !! | TTCTGGTTAAAAGTGGGTTA+AGG | - | chr3.4:84786846-84786865 | None:intergenic | 35.0% |
| !!! | GACTTTAGTTTTTTTTGGGG+GGG | + | chr3.4:84789777-84789796 | MS.gene013499:intron | 35.0% |
| AAACTGCAAACCAGAACACA+GGG | - | chr3.4:84786956-84786975 | None:intergenic | 40.0% | |
| AAGCTTGTAGGAATTTGAGC+AGG | - | chr3.4:84786537-84786556 | None:intergenic | 40.0% | |
| ACCAAAAGGTTGAAACTGCA+AGG | - | chr3.4:84787588-84787607 | None:intergenic | 40.0% | |
| ACTATTGTGTGATTGACACC+TGG | + | chr3.4:84789322-84789341 | MS.gene013499:intron | 40.0% | |
| ACTTGAACCCTCTAACCAAA+AGG | - | chr3.4:84788175-84788194 | None:intergenic | 40.0% | |
| AGAATAGTGAGAGAAAGGGA+AGG | - | chr3.4:84786625-84786644 | None:intergenic | 40.0% | |
| AGACAAACGACCTCAAAAAC+AGG | - | chr3.4:84788615-84788634 | None:intergenic | 40.0% | |
| AGACAATGAGTGAAGAGCAA+GGG | - | chr3.4:84788669-84788688 | None:intergenic | 40.0% | |
| AGCAAAGAGATGGATAGAAG+AGG | + | chr3.4:84789143-84789162 | MS.gene013499:intron | 40.0% | |
| ATACAAACCTGCATATCGTC+TGG | - | chr3.4:84789612-84789631 | None:intergenic | 40.0% | |
| CAGAAGCTTCAAAGGTGATT+AGG | - | chr3.4:84787101-84787120 | None:intergenic | 40.0% | |
| CAGACAATCTTAAGACTGCA+AGG | - | chr3.4:84788725-84788744 | None:intergenic | 40.0% | |
| CCAAAAGGTTGAAACTGCAA+GGG | - | chr3.4:84787587-84787606 | None:intergenic | 40.0% | |
| CCTCACAAATAGCCTGAAAA+TGG | - | chr3.4:84790241-84790260 | None:intergenic | 40.0% | |
| CTCAACCACAATCGAAGTTA+TGG | - | chr3.4:84787916-84787935 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAAGATTGTC+TGG | + | chr3.4:84788723-84788742 | MS.gene013499:intron | 40.0% | |
| GACAAACCCGTTAAAATTGG+GGG | - | chr3.4:84787052-84787071 | None:intergenic | 40.0% | |
| GCCAAACAGTATAACCACTT+GGG | - | chr3.4:84789975-84789994 | None:intergenic | 40.0% | |
| GCTCAAATTCCTACAAGCTT+TGG | + | chr3.4:84786537-84786556 | MS.gene013499:CDS | 40.0% | |
| GGACAAACCCGTTAAAATTG+GGG | - | chr3.4:84787053-84787072 | None:intergenic | 40.0% | |
| GTGGTTATACTGTTTGGCAA+TGG | + | chr3.4:84789977-84789996 | MS.gene013499:intron | 40.0% | |
| TAAACTGCAAACCAGAACAC+AGG | - | chr3.4:84786957-84786976 | None:intergenic | 40.0% | |
| TAGATGTGAATGAGAGACAG+CGG | - | chr3.4:84787496-84787515 | None:intergenic | 40.0% | |
| TCAAGATCGTATTCAGAGCT+TGG | + | chr3.4:84788345-84788364 | MS.gene013499:intron | 40.0% | |
| TCAAGTAAGGTCCTAGAAAG+AGG | + | chr3.4:84787617-84787636 | MS.gene013499:intron | 40.0% | |
| TGATCAAGTAAGGTCCAAGA+AGG | - | chr3.4:84787839-84787858 | None:intergenic | 40.0% | |
| TGCCAAACAGTATAACCACT+TGG | - | chr3.4:84789976-84789995 | None:intergenic | 40.0% | |
| TGGCAATGGCAACTAAGATT+AGG | + | chr3.4:84789991-84790010 | MS.gene013499:intron | 40.0% | |
| TTGGTTAGAGGGTTCAAGTA+AGG | + | chr3.4:84788176-84788195 | MS.gene013499:intron | 40.0% | |
| TTTGTACTCTTCCTCCTTCT+TGG | + | chr3.4:84787822-84787841 | MS.gene013499:intron | 40.0% | |
| ! | AAAACTAGCCTGTAAGGTGA+GGG | - | chr3.4:84788864-84788883 | None:intergenic | 40.0% |
| ! | AATGGATAAAAGCACAGCCT+AGG | - | chr3.4:84789810-84789829 | None:intergenic | 40.0% |
| ! | ACCTCAAAAACAGGTTGAAG+AGG | - | chr3.4:84788606-84788625 | None:intergenic | 40.0% |
| ! | ATGGATAAAAGCACAGCCTA+GGG | - | chr3.4:84789809-84789828 | None:intergenic | 40.0% |
| ! | CCTTACAAAACTAGCCTGTA+AGG | - | chr3.4:84788870-84788889 | None:intergenic | 40.0% |
| ! | GCTTTGCAGTTTCAACCTTT+TGG | + | chr3.4:84788157-84788176 | MS.gene013499:intron | 40.0% |
| ! | GGATTACATGTGTTGAGTTG+TGG | + | chr3.4:84787557-84787576 | MS.gene013499:intron | 40.0% |
| ! | GTTGCAGGAAAATTTGTTCC+TGG | + | chr3.4:84789555-84789574 | MS.gene013499:intron | 40.0% |
| ! | GTTGTGGTTGAGTTGCAATT+TGG | - | chr3.4:84787528-84787547 | None:intergenic | 40.0% |
| ! | TTGCGTATATGCCCATTTTC+AGG | + | chr3.4:84790226-84790245 | MS.gene013499:intron | 40.0% |
| !! | CAAGCTTTGGACATGAATTG+AGG | + | chr3.4:84786550-84786569 | MS.gene013499:CDS | 40.0% |
| !! | CCATTTTCAGGCTATTTGTG+AGG | + | chr3.4:84790238-84790257 | MS.gene013499:intron | 40.0% |
| !! | GAACTGCCCATTTTTACAGA+TGG | + | chr3.4:84786993-84787012 | MS.gene013499:CDS | 40.0% |
| !! | GTGTTCTGGTTTGCAGTTTA+GGG | + | chr3.4:84786957-84786976 | MS.gene013499:intron | 40.0% |
| !! | TGTGTTCTGGTTTGCAGTTT+AGG | + | chr3.4:84786956-84786975 | MS.gene013499:intron | 40.0% |
| !!! | CCTTACAGGCTAGTTTTGTA+AGG | + | chr3.4:84788867-84788886 | MS.gene013499:intron | 40.0% |
| AAACCCGTTAAAATTGGGGG+TGG | - | chr3.4:84787049-84787068 | None:intergenic | 45.0% | |
| AAACGATTTACGACGGCAAG+TGG | - | chr3.4:84788545-84788564 | None:intergenic | 45.0% | |
| AATCTCAACTCACAAGGCAG+CGG | - | chr3.4:84789941-84789960 | None:intergenic | 45.0% | |
| AATGGATCCAACTCGAAGCT+GGG | + | chr3.4:84787170-84787189 | MS.gene013499:CDS | 45.0% | |
| ATACGTGCCGAAAAGTCTGA+CGG | - | chr3.4:84788519-84788538 | None:intergenic | 45.0% | |
| ATGGTGAGTGGGAAATTCTC+CGG | - | chr3.4:84788490-84788509 | None:intergenic | 45.0% | |
| CAGACAATGAGTGAAGAGCA+AGG | - | chr3.4:84788670-84788689 | None:intergenic | 45.0% | |
| CCACACATGTCTACTGTAGA+GGG | - | chr3.4:84788417-84788436 | None:intergenic | 45.0% | |
| CCTTGTCAAAACCTACGATC+AGG | + | chr3.4:84786590-84786609 | MS.gene013499:CDS | 45.0% | |
| GAATGCGAGACAACAGTATG+TGG | - | chr3.4:84788044-84788063 | None:intergenic | 45.0% | |
| GCCCAAGTGGTTATACTGTT+TGG | + | chr3.4:84789971-84789990 | MS.gene013499:intron | 45.0% | |
| TCAAGTAAGGTCCAAGAAGG+AGG | - | chr3.4:84787836-84787855 | None:intergenic | 45.0% | |
| TCTACAGTAGACATGTGTGG+CGG | + | chr3.4:84788417-84788436 | MS.gene013499:intron | 45.0% | |
| TCTTGCACACAACTGAGATG+TGG | + | chr3.4:84789511-84789530 | MS.gene013499:intron | 45.0% | |
| TGGAATGCCGTTGTACGAAT+TGG | + | chr3.4:84787434-84787453 | MS.gene013499:intron | 45.0% | |
| ! | AAACTAGCCTGTAAGGTGAG+GGG | - | chr3.4:84788863-84788882 | None:intergenic | 45.0% |
| ! | ACAGCAAGAGTGTAAACACC+AGG | - | chr3.4:84789576-84789595 | None:intergenic | 45.0% |
| ! | CAAAACTAGCCTGTAAGGTG+AGG | - | chr3.4:84788865-84788884 | None:intergenic | 45.0% |
| ! | CCCTTGCAGTTTCAACCTTT+TGG | + | chr3.4:84787584-84787603 | MS.gene013499:intron | 45.0% |
| ! | GAACGTTTGGGAAGCGTATA+TGG | - | chr3.4:84790275-84790294 | None:intergenic | 45.0% |
| ! | TAATGGATCCAACTCGAAGC+TGG | + | chr3.4:84787169-84787188 | MS.gene013499:CDS | 45.0% |
| ! | TCAGACTTTTCGGCACGTAT+AGG | + | chr3.4:84788519-84788538 | MS.gene013499:intron | 45.0% |
| ! | TGCACCACCCCCAATTTTAA+CGG | + | chr3.4:84787042-84787061 | MS.gene013499:CDS | 45.0% |
| ! | TGGATAAAAGCACAGCCTAG+GGG | - | chr3.4:84789808-84789827 | None:intergenic | 45.0% |
| ! | TTACACTCTTGCTGTCTCAG+AGG | + | chr3.4:84789581-84789600 | MS.gene013499:CDS | 45.0% |
| !! | CCTGATCGTAGGTTTTGACA+AGG | - | chr3.4:84786593-84786612 | None:intergenic | 45.0% |
| !! | CGTTTTGATCAAGAAGCCGT+CGG | + | chr3.4:84788560-84788579 | MS.gene013499:intron | 45.0% |
| !! | GACGGATTGTTATGGTGAGT+GGG | - | chr3.4:84788501-84788520 | None:intergenic | 45.0% |
| !! | GATCGTAGGTTTTGACAAGG+CGG | - | chr3.4:84786590-84786609 | None:intergenic | 45.0% |
| !! | GGGGACATTATTGATTCTGG+AGG | + | chr3.4:84786670-84786689 | MS.gene013499:intron | 45.0% |
| !! | TAGGGAAGCTCTAAACACAC+AGG | + | chr3.4:84789898-84789917 | MS.gene013499:intron | 45.0% |
| !! | TGACGGATTGTTATGGTGAG+TGG | - | chr3.4:84788502-84788521 | None:intergenic | 45.0% |
| !!! | GCCTCTTCAACCTGTTTTTG+AGG | + | chr3.4:84788602-84788621 | MS.gene013499:intron | 45.0% |
| ACATACCAACGCGCAACCAA+CGG | - | chr3.4:84787200-84787219 | None:intergenic | 50.0% | |
| AGTGAAGAGCAAGGGTTTGC+TGG | - | chr3.4:84788661-84788680 | None:intergenic | 50.0% | |
| ATGGGCAGAGAGCAAAGAGA+TGG | + | chr3.4:84789133-84789152 | MS.gene013499:intron | 50.0% | |
| CACAAGATGACCTGAACCGA+CGG | - | chr3.4:84788579-84788598 | None:intergenic | 50.0% | |
| CACATGTCTACTGTAGAGGG+TGG | - | chr3.4:84788414-84788433 | None:intergenic | 50.0% | |
| CCCTCTACAGTAGACATGTG+TGG | + | chr3.4:84788414-84788433 | MS.gene013499:intron | 50.0% | |
| GCCACACATGTCTACTGTAG+AGG | - | chr3.4:84788418-84788437 | None:intergenic | 50.0% | |
| GGTCAGTAAGACCTGATCGT+AGG | - | chr3.4:84786604-84786623 | None:intergenic | 50.0% | |
| GGTTTGCAGTTTAGGGAGTC+AGG | + | chr3.4:84786964-84786983 | MS.gene013499:intron | 50.0% | |
| TGAGCAGAGGAGTGAGAGAT+GGG | + | chr3.4:84789115-84789134 | MS.gene013499:intron | 50.0% | |
| TGGAAGATGGGCATAAAGGG+TGG | + | chr3.4:84789042-84789061 | MS.gene013499:intron | 50.0% | |
| ! | GTCGGTTCAGGTCATCTTGT+GGG | + | chr3.4:84788578-84788597 | MS.gene013499:intron | 50.0% |
| !! | GCACCACCCCCAATTTTAAC+GGG | + | chr3.4:84787043-84787062 | MS.gene013499:CDS | 50.0% |
| AGTGACACCCCTCACCTTAC+AGG | + | chr3.4:84788853-84788872 | MS.gene013499:intron | 55.0% | |
| CATACCAACGCGCAACCAAC+GGG | - | chr3.4:84787199-84787218 | None:intergenic | 55.0% | |
| CTGAGCAGAGGAGTGAGAGA+TGG | + | chr3.4:84789114-84789133 | MS.gene013499:intron | 55.0% | |
| GGCTCTTCCAGACGATATGC+AGG | + | chr3.4:84789602-84789621 | MS.gene013499:CDS | 55.0% | |
| GGTGGCAGATCAGAGCCTTA+TGG | - | chr3.4:84788451-84788470 | None:intergenic | 55.0% | |
| TCCGGCGACGAAACTTCAGA+GGG | - | chr3.4:84788472-84788491 | None:intergenic | 55.0% | |
| ! | TTTGGGGGGGATTTTCCCCT+AGG | + | chr3.4:84789790-84789809 | MS.gene013499:intron | 55.0% |
| !! | ACCCTCTGAAGTTTCGTCGC+CGG | + | chr3.4:84788468-84788487 | MS.gene013499:intron | 55.0% |
| !! | CGTCGGTTCAGGTCATCTTG+TGG | + | chr3.4:84788577-84788596 | MS.gene013499:intron | 55.0% |
| !! | GATCAAGAAGCCGTCGGTTC+AGG | + | chr3.4:84788566-84788585 | MS.gene013499:intron | 55.0% |
| !! | GATTGTTGGGCACTGAGCAG+AGG | + | chr3.4:84789102-84789121 | MS.gene013499:intron | 55.0% |
| CTCCGGCGACGAAACTTCAG+AGG | - | chr3.4:84788473-84788492 | None:intergenic | 60.0% | |
| GGCGACGAAACTTCAGAGGG+TGG | - | chr3.4:84788469-84788488 | None:intergenic | 60.0% | |
| GTGGCGGCTTCGTCACCATA+AGG | + | chr3.4:84788433-84788452 | MS.gene013499:intron | 60.0% | |
| ACCAACGCGCAACCAACGGG+CGG | - | chr3.4:84787196-84787215 | None:intergenic | 65.0% | |
| CGGGCGGCCCAGCTTCGAGT+TGG | - | chr3.4:84787180-84787199 | None:intergenic | 75.0% | |
| CTCGAAGCTGGGCCGCCCGT+TGG | + | chr3.4:84787181-84787200 | MS.gene013499:CDS | 75.0% | |
| ! | GCCGCCCGTTGGTTGCGCGT+TGG | + | chr3.4:84787192-84787211 | MS.gene013499:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84786522 | 84790298 | 84786522 | ID=MS.gene013499 |
| chr3.4 | mRNA | 84786522 | 84790298 | 84786522 | ID=MS.gene013499.t1;Parent=MS.gene013499 |
| chr3.4 | exon | 84786522 | 84786611 | 84786522 | ID=MS.gene013499.t1.exon1;Parent=MS.gene013499.t1 |
| chr3.4 | CDS | 84786522 | 84786611 | 84786522 | ID=cds.MS.gene013499.t1;Parent=MS.gene013499.t1 |
| chr3.4 | exon | 84786973 | 84787064 | 84786973 | ID=MS.gene013499.t1.exon2;Parent=MS.gene013499.t1 |
| chr3.4 | CDS | 84786973 | 84787064 | 84786973 | ID=cds.MS.gene013499.t1;Parent=MS.gene013499.t1 |
| chr3.4 | exon | 84787158 | 84787213 | 84787158 | ID=MS.gene013499.t1.exon3;Parent=MS.gene013499.t1 |
| chr3.4 | CDS | 84787158 | 84787213 | 84787158 | ID=cds.MS.gene013499.t1;Parent=MS.gene013499.t1 |
| chr3.4 | exon | 84789562 | 84789623 | 84789562 | ID=MS.gene013499.t1.exon4;Parent=MS.gene013499.t1 |
| chr3.4 | CDS | 84789562 | 84789623 | 84789562 | ID=cds.MS.gene013499.t1;Parent=MS.gene013499.t1 |
| chr3.4 | exon | 84790248 | 84790298 | 84790248 | ID=MS.gene013499.t1.exon5;Parent=MS.gene013499.t1 |
| chr3.4 | CDS | 84790248 | 84790298 | 84790248 | ID=cds.MS.gene013499.t1;Parent=MS.gene013499.t1 |
| Gene Sequence |
| Protein sequence |
