Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06606.t1 | XP_003602382.1 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.10E-63 | 249.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06606.t1 | Q94C60 | 80.0 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 5.7e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06606.t1 | G7J900 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 5.1e-63 | 249.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76728 | MS.gene06606 | PPI |
| MS.gene06606 | MS.gene013499 | PPI |
| MS.gene06606 | MS.gene057248 | PPI |
| MS.gene06606 | MS.gene82237 | PPI |
| MS.gene06606 | MS.gene06819 | PPI |
| MS.gene06606 | MS.gene77045 | PPI |
| MS.gene06606 | MS.gene48819 | PPI |
| MS.gene06606 | MS.gene87743 | PPI |
| MS.gene87064 | MS.gene06606 | PPI |
| MS.gene06606 | MS.gene42075 | PPI |
| MS.gene057248 | MS.gene06606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06606.t1 | MTR_3g092730 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| MS.gene06606.t1 | MTR_3g092770 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06606.t1 | AT5G63670 | 80.000 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 2.36e-69 | 203 |
| MS.gene06606.t1 | AT5G08565 | 77.391 | 115 | 26 | 0 | 1 | 115 | 1 | 115 | 4.94e-66 | 195 |
| MS.gene06606.t1 | AT5G08565 | 66.087 | 115 | 39 | 0 | 1 | 115 | 1 | 115 | 1.25e-51 | 159 |
| MS.gene06606.t1 | AT5G63670 | 87.342 | 79 | 10 | 0 | 1 | 79 | 1 | 79 | 1.27e-49 | 153 |
Find 29 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACGTTTGGGAAGCGTATA+TGG | 0.267594 | 3.3:-77441917 | None:intergenic |
| AAGGACATACCCGTTAAAAT+TGG | 0.291144 | 3.3:-77438694 | None:intergenic |
| TTACTTGTTTCACGAACGTT+TGG | 0.361888 | 3.3:-77441930 | None:intergenic |
| TTTCAGGATCATTTCTGTAA+TGG | 0.372050 | 3.3:+77438794 | MS.gene06606:intron |
| GGTTTGCAGTTTAGGGAGTC+AGG | 0.390331 | 3.3:+77438606 | MS.gene06606:intron |
| AGGACATACCCGTTAAAATT+GGG | 0.394605 | 3.3:-77438693 | None:intergenic |
| AATTCATGTCCAAAGCTTGT+AGG | 0.398605 | 3.3:-77438188 | None:intergenic |
| GCTCAAATTCCTACAAGCTT+TGG | 0.399271 | 3.3:+77438179 | MS.gene06606:CDS |
| TAATGGATCCAACTCGAAGC+TGG | 0.437009 | 3.3:+77438811 | MS.gene06606:CDS |
| CATACCAACGCGCAACCAAC+GGG | 0.439614 | 3.3:-77438838 | None:intergenic |
| GTTGCAGGAAAATTTGTTCC+TGG | 0.441087 | 3.3:+77441200 | MS.gene06606:intron |
| CTCGAAGCTGGGCCGCCCGT+TGG | 0.457054 | 3.3:+77438823 | MS.gene06606:CDS |
| AAGCTTTGGACATGAATTGA+GGG | 0.465856 | 3.3:+77438193 | MS.gene06606:CDS |
| ATACAAACCTGCATATCGTC+TGG | 0.468215 | 3.3:-77441254 | None:intergenic |
| TACTTGTTTCACGAACGTTT+GGG | 0.492974 | 3.3:-77441929 | None:intergenic |
| GGCTCTTCCAGACGATATGC+AGG | 0.493041 | 3.3:+77441247 | MS.gene06606:CDS |
| CAAGCTTTGGACATGAATTG+AGG | 0.494858 | 3.3:+77438192 | MS.gene06606:CDS |
| CCTTGTCAAAACCTACGATC+AGG | 0.523824 | 3.3:+77438232 | MS.gene06606:CDS |
| GCCGCCCGTTGGTTGCGCGT+TGG | 0.539318 | 3.3:+77438834 | MS.gene06606:CDS |
| CGGGCGGCCCAGCTTCGAGT+TGG | 0.547586 | 3.3:-77438819 | None:intergenic |
| ACATACCAACGCGCAACCAA+CGG | 0.564887 | 3.3:-77438839 | None:intergenic |
| AATGGATCCAACTCGAAGCT+GGG | 0.572441 | 3.3:+77438812 | MS.gene06606:CDS |
| AAGCTTGTAGGAATTTGAGC+AGG | 0.591537 | 3.3:-77438176 | None:intergenic |
| GGACATACCCGTTAAAATTG+GGG | 0.597620 | 3.3:-77438692 | None:intergenic |
| TTACACTCTTGCTGTCTCAG+AGG | 0.600043 | 3.3:+77441226 | MS.gene06606:CDS |
| ACCAACGCGCAACCAACGGG+CGG | 0.605443 | 3.3:-77438835 | None:intergenic |
| GGTCAGTAAGACCTGATCGT+AGG | 0.658939 | 3.3:-77438243 | None:intergenic |
| ACAGCAAGAGTGTAAACACC+AGG | 0.664978 | 3.3:-77441218 | None:intergenic |
| GACATACCCGTTAAAATTGG+GGG | 0.696844 | 3.3:-77438691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCAATATAATAATGTAAA+GGG | - | chr3.3:77438926-77438945 | None:intergenic | 10.0% |
| !!! | AAAATTATTTTTTGTGTATT+AGG | - | chr3.3:77441766-77441785 | None:intergenic | 10.0% |
| !! | ATAAGTATTATTCAATGTTT+AGG | - | chr3.3:77439411-77439430 | None:intergenic | 15.0% |
| !! | CTATCAATATAATAATGTAA+AGG | - | chr3.3:77438927-77438946 | None:intergenic | 15.0% |
| !! | TTTCAAAATTCAAATTTAAC+TGG | - | chr3.3:77440832-77440851 | None:intergenic | 15.0% |
| !!! | AATTTGACTTTAGTTTTTTT+TGG | + | chr3.3:77441417-77441436 | MS.gene06606:intron | 15.0% |
| !!! | AGAAAATAAAAAGTATAACT+AGG | - | chr3.3:77440018-77440037 | None:intergenic | 15.0% |
| !!! | ATTTGACTTTAGTTTTTTTT+GGG | + | chr3.3:77441418-77441437 | MS.gene06606:intron | 15.0% |
| !!! | GAAAATAAAAAGTATAACTA+GGG | - | chr3.3:77440017-77440036 | None:intergenic | 15.0% |
| !!! | TAATACTTATATTTTGTCTA+TGG | + | chr3.3:77439421-77439440 | MS.gene06606:intron | 15.0% |
| !!! | TTTTATTTTCTTTTAAAGTC+TGG | + | chr3.3:77440027-77440046 | MS.gene06606:intron | 15.0% |
| !! | AAAATCTCTAGTACTTATTA+TGG | + | chr3.3:77440438-77440457 | MS.gene06606:intron | 20.0% |
| !! | ACCTTTCTTTATAACAAAAA+AGG | - | chr3.3:77440889-77440908 | None:intergenic | 20.0% |
| !! | AGAATTGATTATGACATTAT+TGG | + | chr3.3:77438338-77438357 | MS.gene06606:intron | 20.0% |
| !! | CTAACAAAAATTAAGTTATG+TGG | + | chr3.3:77439316-77439335 | MS.gene06606:intron | 20.0% |
| !!! | ATAAACTAATGATCTAAGAT+AGG | - | chr3.3:77440474-77440493 | None:intergenic | 20.0% |
| !!! | ATTCTGTAAAATTTTGATTC+TGG | - | chr3.3:77438505-77438524 | None:intergenic | 20.0% |
| !!! | CTTTTATCCATTAATTTAAC+TGG | + | chr3.3:77441463-77441482 | MS.gene06606:intron | 20.0% |
| !!! | GAAGAGTACAAAATTTAATT+AGG | - | chr3.3:77439457-77439476 | None:intergenic | 20.0% |
| !!! | GTTATACAATGTTTTGATTA+TGG | + | chr3.3:77440667-77440686 | MS.gene06606:intron | 20.0% |
| !!! | TAAAGTACTGTTTAATGTTT+AGG | + | chr3.3:77439898-77439917 | MS.gene06606:intron | 20.0% |
| !!! | TCCTTTTTTGTTATAAAGAA+AGG | + | chr3.3:77440885-77440904 | MS.gene06606:intron | 20.0% |
| !!! | TTATTCTTTTTCTTTTGCAA+AGG | + | chr3.3:77441509-77441528 | MS.gene06606:intron | 20.0% |
| !!! | TTTGACTTTAGTTTTTTTTG+GGG | + | chr3.3:77441419-77441438 | MS.gene06606:intron | 20.0% |
| ! | AAACAAAATCTGTGTATGTT+TGG | - | chr3.3:77438557-77438576 | None:intergenic | 25.0% |
| ! | ACACATGTAATACATAGATT+TGG | - | chr3.3:77439766-77439785 | None:intergenic | 25.0% |
| ! | ACACATGTAATCCATAAATT+TGG | - | chr3.3:77439192-77439211 | None:intergenic | 25.0% |
| ! | AGAACAATATGGAAAATTAC+TGG | - | chr3.3:77440401-77440420 | None:intergenic | 25.0% |
| ! | CACTATTCTTAGTATATGTT+TGG | + | chr3.3:77438278-77438297 | MS.gene06606:intron | 25.0% |
| ! | GTGATTTCATGTTAGAATTT+GGG | - | chr3.3:77440553-77440572 | None:intergenic | 25.0% |
| ! | TATCCATTAATTTAACTGGT+CGG | + | chr3.3:77441467-77441486 | MS.gene06606:intron | 25.0% |
| ! | TCTAAAAGAGAAAAACTAGA+CGG | - | chr3.3:77441110-77441129 | None:intergenic | 25.0% |
| ! | TGATGTAAATAGATATGACA+AGG | - | chr3.3:77438716-77438735 | None:intergenic | 25.0% |
| ! | TGTGATTTCATGTTAGAATT+TGG | - | chr3.3:77440554-77440573 | None:intergenic | 25.0% |
| ! | TTTGCCAATAATGTCTAATA+AGG | + | chr3.3:77440583-77440602 | MS.gene06606:intron | 25.0% |
| !! | AAGTTTTTCTTATATGTTGC+AGG | + | chr3.3:77441185-77441204 | MS.gene06606:intron | 25.0% |
| !! | AATTTTGTATTCCTCTTTCT+AGG | - | chr3.3:77439846-77439865 | None:intergenic | 25.0% |
| !! | ACCTACATCTAAAATGTTTA+AGG | - | chr3.3:77440649-77440668 | None:intergenic | 25.0% |
| !! | TCCTTAAACATTTTAGATGT+AGG | + | chr3.3:77440645-77440664 | MS.gene06606:intron | 25.0% |
| !!! | AATGTTTTGATTATGGAAGA+TGG | + | chr3.3:77440674-77440693 | MS.gene06606:intron | 25.0% |
| !!! | AATTATTGTTTTTGAGAGAG+TGG | - | chr3.3:77441401-77441420 | None:intergenic | 25.0% |
| !!! | ATGTTTTGATTATGGAAGAT+GGG | + | chr3.3:77440675-77440694 | MS.gene06606:intron | 25.0% |
| !!! | ATTACCAGTTTTTAATTCAG+AGG | - | chr3.3:77440925-77440944 | None:intergenic | 25.0% |
| !!! | ATTTTGATTCTGGTTAAAAG+TGG | - | chr3.3:77438495-77438514 | None:intergenic | 25.0% |
| !!! | GCAAAGGTGTTAAAAATTTA+GGG | + | chr3.3:77441525-77441544 | MS.gene06606:intron | 25.0% |
| !!! | TCTTCATCAATTTGATTTTC+AGG | + | chr3.3:77438778-77438797 | MS.gene06606:intron | 25.0% |
| !!! | TGCAAAGGTGTTAAAAATTT+AGG | + | chr3.3:77441524-77441543 | MS.gene06606:intron | 25.0% |
| !!! | TTGACTTTAGTTTTTTTTGG+GGG | + | chr3.3:77441420-77441439 | MS.gene06606:intron | 25.0% |
| !!! | TTTCAACCTTTTGGTTAAAA+GGG | + | chr3.3:77439235-77439254 | MS.gene06606:intron | 25.0% |
| !!! | TTTTGATTCTGGTTAAAAGT+GGG | - | chr3.3:77438494-77438513 | None:intergenic | 25.0% |
| AATCAATAATGTCCCCTAAA+AGG | - | chr3.3:77438308-77438327 | None:intergenic | 30.0% | |
| ACTAAGAATAGTGAGAGAAA+GGG | - | chr3.3:77438271-77438290 | None:intergenic | 30.0% | |
| AGTACCTCTGAATTAAAAAC+TGG | + | chr3.3:77440918-77440937 | MS.gene06606:intron | 30.0% | |
| ATTCGTATATGCTTCTTATG+AGG | - | chr3.3:77439596-77439615 | None:intergenic | 30.0% | |
| ATTGAAAATCTCAACTCACA+AGG | - | chr3.3:77441592-77441611 | None:intergenic | 30.0% | |
| CACAAATAGAAAAACAGAGA+CGG | - | chr3.3:77440342-77440361 | None:intergenic | 30.0% | |
| CCAATAATGTCTAATAAGGA+AGG | + | chr3.3:77440587-77440606 | MS.gene06606:intron | 30.0% | |
| CCTTCCTTATTAGACATTAT+TGG | - | chr3.3:77440590-77440609 | None:intergenic | 30.0% | |
| CTGGTCGGATATAAAATATT+TGG | + | chr3.3:77441482-77441501 | MS.gene06606:intron | 30.0% | |
| CTTCTTCCATCTGTAAAAAT+GGG | - | chr3.3:77438644-77438663 | None:intergenic | 30.0% | |
| GATAGTAAGTTCAGATTGTT+GGG | + | chr3.3:77440734-77440753 | MS.gene06606:intron | 30.0% | |
| GTAATCCATAAATTTGGTTG+TGG | - | chr3.3:77439186-77439205 | None:intergenic | 30.0% | |
| GTATTACATGTGTTGAGTTA+TGG | + | chr3.3:77439773-77439792 | MS.gene06606:intron | 30.0% | |
| TACTAAGAATAGTGAGAGAA+AGG | - | chr3.3:77438272-77438291 | None:intergenic | 30.0% | |
| TACTTGACCATTTAACCAAA+AGG | + | chr3.3:77439492-77439511 | MS.gene06606:intron | 30.0% | |
| TATAAATAATCCCTGTGTTC+TGG | + | chr3.3:77438585-77438604 | MS.gene06606:intron | 30.0% | |
| TATCCGACCAGTTAAATTAA+TGG | - | chr3.3:77441473-77441492 | None:intergenic | 30.0% | |
| TCTTCTTCCATCTGTAAAAA+TGG | - | chr3.3:77438645-77438664 | None:intergenic | 30.0% | |
| TGATAGTAAGTTCAGATTGT+TGG | + | chr3.3:77440733-77440752 | MS.gene06606:intron | 30.0% | |
| TTGATCAAAACGATTTACGA+CGG | - | chr3.3:77440195-77440214 | None:intergenic | 30.0% | |
| TTTCAGGATCATTTCTGTAA+TGG | + | chr3.3:77438794-77438813 | MS.gene06606:intron | 30.0% | |
| TTTGGTTAAATGGTCAAGTA+AGG | - | chr3.3:77439492-77439511 | None:intergenic | 30.0% | |
| ! | AAGTTATGGATTACATGTGT+TGG | - | chr3.3:77438975-77438994 | None:intergenic | 30.0% |
| ! | AATTTTGCATTCCTCTTTCT+AGG | - | chr3.3:77439273-77439292 | None:intergenic | 30.0% |
| ! | ACTAGAGATTTTTGCCATTA+AGG | - | chr3.3:77440430-77440449 | None:intergenic | 30.0% |
| ! | AGGAGTATATAACCATTTAG+TGG | + | chr3.3:77440607-77440626 | MS.gene06606:intron | 30.0% |
| ! | ATTTTCAATAAATGCCCAAG+TGG | + | chr3.3:77441603-77441622 | MS.gene06606:intron | 30.0% |
| ! | GTAATACATAGATTTGGTTG+TGG | - | chr3.3:77439760-77439779 | None:intergenic | 30.0% |
| ! | TAGTATGTTGTTTACACTCA+TGG | - | chr3.3:77439384-77439403 | None:intergenic | 30.0% |
| ! | TGGTAATGTAATTTAGTGAG+TGG | + | chr3.3:77440938-77440957 | MS.gene06606:intron | 30.0% |
| !! | ACTTTAGAATCAGATACGAA+TGG | + | chr3.3:77439039-77439058 | MS.gene06606:intron | 30.0% |
| !! | CTTTAGAATCAGATACGAAT+GGG | + | chr3.3:77439040-77439059 | MS.gene06606:intron | 30.0% |
| !! | GTTTCAACCTTTTGGTTAAA+AGG | + | chr3.3:77439234-77439253 | MS.gene06606:intron | 30.0% |
| !! | GTTTCTACCTTTTGGTTAAA+TGG | - | chr3.3:77439502-77439521 | None:intergenic | 30.0% |
| !! | TAATTCAGAGGTACTAATAC+AGG | - | chr3.3:77440913-77440932 | None:intergenic | 30.0% |
| !!! | ATATGTTTGGTTCTCCTTTT+AGG | + | chr3.3:77438291-77438310 | MS.gene06606:intron | 30.0% |
| !!! | TAGTTTTGTAAGGTTGAGTT+AGG | + | chr3.3:77440522-77440541 | MS.gene06606:intron | 30.0% |
| !!! | TATGTTTGGTTCTCCTTTTA+GGG | + | chr3.3:77438292-77438311 | MS.gene06606:intron | 30.0% |
| !!! | TGACTTTAGTTTTTTTTGGG+GGG | + | chr3.3:77441421-77441440 | MS.gene06606:intron | 30.0% |
| AAAGAGAACTGAAAGGCAAT+GGG | - | chr3.3:77438903-77438922 | None:intergenic | 35.0% | |
| AAGGACATACCCGTTAAAAT+TGG | - | chr3.3:77438697-77438716 | None:intergenic | 35.0% | |
| AATTCATGTCCAAAGCTTGT+AGG | - | chr3.3:77438191-77438210 | None:intergenic | 35.0% | |
| AGAAGCTTCAAAGGTGATTA+GGG | - | chr3.3:77438742-77438761 | None:intergenic | 35.0% | |
| AGACAATCTTAAGACTGCAT+GGG | - | chr3.3:77440367-77440386 | None:intergenic | 35.0% | |
| AGAGAGTGGCATAAAAAAAG+AGG | - | chr3.3:77441387-77441406 | None:intergenic | 35.0% | |
| AGCTTCAAGTGAATCAATTC+CGG | - | chr3.3:77438390-77438409 | None:intergenic | 35.0% | |
| AGGACATACCCGTTAAAATT+GGG | - | chr3.3:77438696-77438715 | None:intergenic | 35.0% | |
| ATGACATTCAGAAGCTTCAA+AGG | - | chr3.3:77438751-77438770 | None:intergenic | 35.0% | |
| ATTATGGAAGATGGGCATAA+AGG | + | chr3.3:77440683-77440702 | MS.gene06606:intron | 35.0% | |
| ATTGTTCTCATCGTCCTTAA+TGG | + | chr3.3:77440413-77440432 | MS.gene06606:intron | 35.0% | |
| CAATCTGAACTTACTATCAC+AGG | - | chr3.3:77440732-77440751 | None:intergenic | 35.0% | |
| CAGAAATGAAAATTCTCTCC+AGG | - | chr3.3:77440988-77441007 | None:intergenic | 35.0% | |
| CTAAAGTAGTGCATCTACTA+TGG | - | chr3.3:77439026-77439045 | None:intergenic | 35.0% | |
| CTCAACCACAACCAAATTTA+TGG | + | chr3.3:77439178-77439197 | MS.gene06606:intron | 35.0% | |
| CTCACAAATAGCCTGAAAAT+GGG | - | chr3.3:77441885-77441904 | None:intergenic | 35.0% | |
| GATAGGATGATACAAGAGAA+AGG | - | chr3.3:77441798-77441817 | None:intergenic | 35.0% | |
| GATTACATGTGTTGGAGTTA+TGG | - | chr3.3:77439537-77439556 | None:intergenic | 35.0% | |
| GCATTCACATCTTCTTGTTA+TGG | + | chr3.3:77439701-77439720 | MS.gene06606:intron | 35.0% | |
| GCCAAACATTATAACCACTT+GGG | - | chr3.3:77441620-77441639 | None:intergenic | 35.0% | |
| GTAATCCATAACTTCGATTG+TGG | + | chr3.3:77439551-77439570 | MS.gene06606:intron | 35.0% | |
| GTGATTACCAATTCGTACAA+CGG | - | chr3.3:77439086-77439105 | None:intergenic | 35.0% | |
| GTGGTTATAATGTTTGGCAA+TGG | + | chr3.3:77441622-77441641 | MS.gene06606:intron | 35.0% | |
| TAAAGGGAAAGAGAACTGAA+AGG | - | chr3.3:77438910-77438929 | None:intergenic | 35.0% | |
| TAAGGACGATGAGAACAATA+TGG | - | chr3.3:77440412-77440431 | None:intergenic | 35.0% | |
| TAGTACATTCTATACTCTCG+CGG | + | chr3.3:77439925-77439944 | MS.gene06606:intron | 35.0% | |
| TCAAATGCTGTTGAACGAAT+TGG | + | chr3.3:77439632-77439651 | MS.gene06606:intron | 35.0% | |
| TCAAGATCGTATTCAAAGCT+TGG | + | chr3.3:77439988-77440007 | MS.gene06606:intron | 35.0% | |
| TCTCTCATTCACATCTACTA+TGG | + | chr3.3:77439141-77439160 | MS.gene06606:intron | 35.0% | |
| TGCCAAACATTATAACCACT+TGG | - | chr3.3:77441621-77441640 | None:intergenic | 35.0% | |
| TGGTTAAAAGGGTTCAAGTA+AGG | + | chr3.3:77439246-77439265 | MS.gene06606:intron | 35.0% | |
| TGTCAGATACAACCACTAAA+TGG | - | chr3.3:77440622-77440641 | None:intergenic | 35.0% | |
| TTATGGAAGATGGGCATAAA+GGG | + | chr3.3:77440684-77440703 | MS.gene06606:intron | 35.0% | |
| TTCAGTGTAAACTGTTCGAT+AGG | - | chr3.3:77441815-77441834 | None:intergenic | 35.0% | |
| ! | AAGGTGAAGTGATTTGTGTT+TGG | - | chr3.3:77438469-77438488 | None:intergenic | 35.0% |
| ! | ACCTCAAAAACAGGTTGAAA+AGG | - | chr3.3:77440249-77440268 | None:intergenic | 35.0% |
| ! | CTTGAACCCTTTTAACCAAA+AGG | - | chr3.3:77439244-77439263 | None:intergenic | 35.0% |
| ! | GTTCTGTAGTTTCTACCTTT+TGG | - | chr3.3:77439510-77439529 | None:intergenic | 35.0% |
| ! | TAACAATCCGTCAGACTTTT+CGG | + | chr3.3:77440152-77440171 | MS.gene06606:intron | 35.0% |
| !! | AAAAGTCTGACGGATTGTTA+TGG | - | chr3.3:77440152-77440171 | None:intergenic | 35.0% |
| !! | AAGCTTTGGACATGAATTGA+GGG | + | chr3.3:77438193-77438212 | MS.gene06606:CDS | 35.0% |
| !! | AGTTTCAACCTTTTGGTTAG+AGG | + | chr3.3:77439807-77439826 | MS.gene06606:intron | 35.0% |
| !! | CAAGTAGTATTGATTGTCTC+CGG | + | chr3.3:77438368-77438387 | MS.gene06606:intron | 35.0% |
| !! | GTTTCAACCTTTTGGTTAGA+GGG | + | chr3.3:77439808-77439827 | MS.gene06606:intron | 35.0% |
| !! | TTAGGGGACATTATTGATTC+TGG | + | chr3.3:77438309-77438328 | MS.gene06606:intron | 35.0% |
| !! | TTCTGGTTAAAAGTGGGTTA+AGG | - | chr3.3:77438488-77438507 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTCTCCTTTTAG+GGG | + | chr3.3:77438293-77438312 | MS.gene06606:intron | 35.0% |
| !!! | GACTTTAGTTTTTTTTGGGG+GGG | + | chr3.3:77441422-77441441 | MS.gene06606:intron | 35.0% |
| AAACTGCAAACCAGAACACA+GGG | - | chr3.3:77438598-77438617 | None:intergenic | 40.0% | |
| AAGCTTGTAGGAATTTGAGC+AGG | - | chr3.3:77438179-77438198 | None:intergenic | 40.0% | |
| AATCTCAACTCACAAGGCAA+CGG | - | chr3.3:77441586-77441605 | None:intergenic | 40.0% | |
| ACCAAAAGGTTGAAACTGCA+AGG | - | chr3.3:77439230-77439249 | None:intergenic | 40.0% | |
| ACTATTGTGTGATTGACACC+TGG | + | chr3.3:77440967-77440986 | MS.gene06606:intron | 40.0% | |
| ACTTGAACCCTCTAACCAAA+AGG | - | chr3.3:77439818-77439837 | None:intergenic | 40.0% | |
| AGAATAGTGAGAGAAAGGGA+AGG | - | chr3.3:77438267-77438286 | None:intergenic | 40.0% | |
| AGACAAACGACCTCAAAAAC+AGG | - | chr3.3:77440258-77440277 | None:intergenic | 40.0% | |
| AGACAATGAGTGAAGAGCAA+GGG | - | chr3.3:77440312-77440331 | None:intergenic | 40.0% | |
| AGCAAAGAGATGGATAGAAG+AGG | + | chr3.3:77440788-77440807 | MS.gene06606:intron | 40.0% | |
| ATACAAACCTGCATATCGTC+TGG | - | chr3.3:77441257-77441276 | None:intergenic | 40.0% | |
| CAGAAGCTTCAAAGGTGATT+AGG | - | chr3.3:77438743-77438762 | None:intergenic | 40.0% | |
| CAGACAATCTTAAGACTGCA+TGG | - | chr3.3:77440368-77440387 | None:intergenic | 40.0% | |
| CATGCAGTCTTAAGATTGTC+TGG | + | chr3.3:77440366-77440385 | MS.gene06606:intron | 40.0% | |
| CCAAAAGGTTGAAACTGCAA+GGG | - | chr3.3:77439229-77439248 | None:intergenic | 40.0% | |
| CCTCACAAATAGCCTGAAAA+TGG | - | chr3.3:77441886-77441905 | None:intergenic | 40.0% | |
| CTCAACCACAATCGAAGTTA+TGG | - | chr3.3:77439559-77439578 | None:intergenic | 40.0% | |
| GAAAGAGAACTGAAAGGCAA+TGG | - | chr3.3:77438904-77438923 | None:intergenic | 40.0% | |
| GAATGGGAGACAACATTATG+TGG | + | chr3.3:77439056-77439075 | MS.gene06606:intron | 40.0% | |
| GACATACCCGTTAAAATTGG+GGG | - | chr3.3:77438694-77438713 | None:intergenic | 40.0% | |
| GCCCAAGTGGTTATAATGTT+TGG | + | chr3.3:77441616-77441635 | MS.gene06606:intron | 40.0% | |
| GCTCAAATTCCTACAAGCTT+TGG | + | chr3.3:77438179-77438198 | MS.gene06606:CDS | 40.0% | |
| GGACATACCCGTTAAAATTG+GGG | - | chr3.3:77438695-77438714 | None:intergenic | 40.0% | |
| GTAATCCATAACTTCGACTG+TGG | + | chr3.3:77438981-77439000 | MS.gene06606:intron | 40.0% | |
| TAAACTGCAAACCAGAACAC+AGG | - | chr3.3:77438599-77438618 | None:intergenic | 40.0% | |
| TAGATGTGAATGAGAGACAG+CGG | - | chr3.3:77439138-77439157 | None:intergenic | 40.0% | |
| TCAAGTAAGGTCCTAGAAAG+AGG | + | chr3.3:77439259-77439278 | MS.gene06606:intron | 40.0% | |
| TGGCAATGGCAACTAAGATT+AGG | + | chr3.3:77441636-77441655 | MS.gene06606:intron | 40.0% | |
| TTCAACCACAGTCGAAGTTA+TGG | - | chr3.3:77438989-77439008 | None:intergenic | 40.0% | |
| TTGGTTAGAGGGTTCAAGTA+AGG | + | chr3.3:77439819-77439838 | MS.gene06606:intron | 40.0% | |
| TTTGTACTCTTCCTCCTTCT+TGG | + | chr3.3:77439465-77439484 | MS.gene06606:intron | 40.0% | |
| ! | AAAACTAGCCTGTAAGGTGA+GGG | - | chr3.3:77440509-77440528 | None:intergenic | 40.0% |
| ! | AATGGATAAAAGCACAGCCT+AGG | - | chr3.3:77441455-77441474 | None:intergenic | 40.0% |
| ! | ATGGATAAAAGCACAGCCTA+GGG | - | chr3.3:77441454-77441473 | None:intergenic | 40.0% |
| ! | CCTTACAAAACTAGCCTGTA+AGG | - | chr3.3:77440515-77440534 | None:intergenic | 40.0% |
| ! | GCTTTGCAGTTTCAACCTTT+TGG | + | chr3.3:77439800-77439819 | MS.gene06606:intron | 40.0% |
| ! | GGATTACATGTGTTGAGTTG+TGG | + | chr3.3:77439199-77439218 | MS.gene06606:intron | 40.0% |
| ! | GTTGCAGGAAAATTTGTTCC+TGG | + | chr3.3:77441200-77441219 | MS.gene06606:intron | 40.0% |
| ! | GTTGTGGTTGAGTTGCAATT+TGG | - | chr3.3:77439170-77439189 | None:intergenic | 40.0% |
| ! | TTGCGTATATGCCCATTTTC+AGG | + | chr3.3:77441871-77441890 | MS.gene06606:intron | 40.0% |
| !! | CAAGCTTTGGACATGAATTG+AGG | + | chr3.3:77438192-77438211 | MS.gene06606:CDS | 40.0% |
| !! | CCATTTTCAGGCTATTTGTG+AGG | + | chr3.3:77441883-77441902 | MS.gene06606:intron | 40.0% |
| !! | GAACTGCCCATTTTTACAGA+TGG | + | chr3.3:77438635-77438654 | MS.gene06606:CDS | 40.0% |
| !! | GTGTTCTGGTTTGCAGTTTA+GGG | + | chr3.3:77438599-77438618 | MS.gene06606:intron | 40.0% |
| !! | TGTGTTCTGGTTTGCAGTTT+AGG | + | chr3.3:77438598-77438617 | MS.gene06606:intron | 40.0% |
| !!! | CCTTACAGGCTAGTTTTGTA+AGG | + | chr3.3:77440512-77440531 | MS.gene06606:intron | 40.0% |
| !!! | GCCTTTTCAACCTGTTTTTG+AGG | + | chr3.3:77440245-77440264 | MS.gene06606:intron | 40.0% |
| AAACGATTTACGACGGCAAG+TGG | - | chr3.3:77440188-77440207 | None:intergenic | 45.0% | |
| AATGGATCCAACTCGAAGCT+GGG | + | chr3.3:77438812-77438831 | MS.gene06606:CDS | 45.0% | |
| ATACCCGTTAAAATTGGGGG+TGG | - | chr3.3:77438691-77438710 | None:intergenic | 45.0% | |
| ATACGTGCCGAAAAGTCTGA+CGG | - | chr3.3:77440162-77440181 | None:intergenic | 45.0% | |
| CAGACAATGAGTGAAGAGCA+AGG | - | chr3.3:77440313-77440332 | None:intergenic | 45.0% | |
| CCTTGTCAAAACCTACGATC+AGG | + | chr3.3:77438232-77438251 | MS.gene06606:CDS | 45.0% | |
| GAATGCGAGACAACAGTATG+TGG | - | chr3.3:77439687-77439706 | None:intergenic | 45.0% | |
| TCAAGTAAGGTCCAAGAAGG+AGG | - | chr3.3:77439479-77439498 | None:intergenic | 45.0% | |
| TCTTGCACACAACTGAGATG+TGG | + | chr3.3:77441156-77441175 | MS.gene06606:intron | 45.0% | |
| TGGAATGCCGTTGTACGAAT+TGG | + | chr3.3:77439076-77439095 | MS.gene06606:intron | 45.0% | |
| TGGTCAAGTAAGGTCCAAGA+AGG | - | chr3.3:77439482-77439501 | None:intergenic | 45.0% | |
| ! | AAACTAGCCTGTAAGGTGAG+GGG | - | chr3.3:77440508-77440527 | None:intergenic | 45.0% |
| ! | ACAGCAAGAGTGTAAACACC+AGG | - | chr3.3:77441221-77441240 | None:intergenic | 45.0% |
| ! | CAAAACTAGCCTGTAAGGTG+AGG | - | chr3.3:77440510-77440529 | None:intergenic | 45.0% |
| ! | CCCTTGCAGTTTCAACCTTT+TGG | + | chr3.3:77439226-77439245 | MS.gene06606:intron | 45.0% |
| ! | GAACGTTTGGGAAGCGTATA+TGG | - | chr3.3:77441920-77441939 | None:intergenic | 45.0% |
| ! | TAATGGATCCAACTCGAAGC+TGG | + | chr3.3:77438811-77438830 | MS.gene06606:CDS | 45.0% |
| ! | TCAGACTTTTCGGCACGTAT+AGG | + | chr3.3:77440162-77440181 | MS.gene06606:intron | 45.0% |
| ! | TGCACCACCCCCAATTTTAA+CGG | + | chr3.3:77438684-77438703 | MS.gene06606:CDS | 45.0% |
| ! | TGGATAAAAGCACAGCCTAG+GGG | - | chr3.3:77441453-77441472 | None:intergenic | 45.0% |
| ! | TTACACTCTTGCTGTCTCAG+AGG | + | chr3.3:77441226-77441245 | MS.gene06606:CDS | 45.0% |
| !! | CCTGATCGTAGGTTTTGACA+AGG | - | chr3.3:77438235-77438254 | None:intergenic | 45.0% |
| !! | CGTTTTGATCAAGAAGCCGT+CGG | + | chr3.3:77440203-77440222 | MS.gene06606:intron | 45.0% |
| !! | GACGGATTGTTATGGTGAGT+GGG | - | chr3.3:77440144-77440163 | None:intergenic | 45.0% |
| !! | GATCGTAGGTTTTGACAAGG+CGG | - | chr3.3:77438232-77438251 | None:intergenic | 45.0% |
| !! | GGGGACATTATTGATTCTGG+AGG | + | chr3.3:77438312-77438331 | MS.gene06606:intron | 45.0% |
| !! | TAGGGAAGCTCTAAACACAC+AGG | + | chr3.3:77441543-77441562 | MS.gene06606:intron | 45.0% |
| !! | TGACGGATTGTTATGGTGAG+TGG | - | chr3.3:77440145-77440164 | None:intergenic | 45.0% |
| ACATACCAACGCGCAACCAA+CGG | - | chr3.3:77438842-77438861 | None:intergenic | 50.0% | |
| AGTGAAGAGCAAGGGTTTGC+TGG | - | chr3.3:77440304-77440323 | None:intergenic | 50.0% | |
| ATGGGCAGAGAGCAAAGAGA+TGG | + | chr3.3:77440778-77440797 | MS.gene06606:intron | 50.0% | |
| ATGGTGAGTGGGAACTTCTC+CGG | - | chr3.3:77440133-77440152 | None:intergenic | 50.0% | |
| CACAAGATGACCTGAACCGA+CGG | - | chr3.3:77440222-77440241 | None:intergenic | 50.0% | |
| CCACACGTGTCTACTGTAGA+GGG | - | chr3.3:77440060-77440079 | None:intergenic | 50.0% | |
| GGTCAGTAAGACCTGATCGT+AGG | - | chr3.3:77438246-77438265 | None:intergenic | 50.0% | |
| GGTTTGCAGTTTAGGGAGTC+AGG | + | chr3.3:77438606-77438625 | MS.gene06606:intron | 50.0% | |
| TCTACAGTAGACACGTGTGG+CGG | + | chr3.3:77440060-77440079 | MS.gene06606:intron | 50.0% | |
| TGAGCAGAGGAGTGAGAGAT+GGG | + | chr3.3:77440760-77440779 | MS.gene06606:intron | 50.0% | |
| TGGAAGATGGGCATAAAGGG+TGG | + | chr3.3:77440687-77440706 | MS.gene06606:intron | 50.0% | |
| ! | GTCGGTTCAGGTCATCTTGT+GGG | + | chr3.3:77440221-77440240 | MS.gene06606:intron | 50.0% |
| !! | GCACCACCCCCAATTTTAAC+GGG | + | chr3.3:77438685-77438704 | MS.gene06606:CDS | 50.0% |
| AGTGACACCCCTCACCTTAC+AGG | + | chr3.3:77440498-77440517 | MS.gene06606:intron | 55.0% | |
| CACGTGTCTACTGTAGAGGG+TGG | - | chr3.3:77440057-77440076 | None:intergenic | 55.0% | |
| CATACCAACGCGCAACCAAC+GGG | - | chr3.3:77438841-77438860 | None:intergenic | 55.0% | |
| CCCTCTACAGTAGACACGTG+TGG | + | chr3.3:77440057-77440076 | MS.gene06606:intron | 55.0% | |
| CTGAGCAGAGGAGTGAGAGA+TGG | + | chr3.3:77440759-77440778 | MS.gene06606:intron | 55.0% | |
| GCCACACGTGTCTACTGTAG+AGG | - | chr3.3:77440061-77440080 | None:intergenic | 55.0% | |
| GGCTCTTCCAGACGATATGC+AGG | + | chr3.3:77441247-77441266 | MS.gene06606:CDS | 55.0% | |
| GGTGGCAGATCAGAGCCTTA+TGG | - | chr3.3:77440094-77440113 | None:intergenic | 55.0% | |
| TCCGGCGACGAAACTTCAGA+GGG | - | chr3.3:77440115-77440134 | None:intergenic | 55.0% | |
| ! | TTTGGGGGGGATTTTCCCCT+AGG | + | chr3.3:77441435-77441454 | MS.gene06606:intron | 55.0% |
| !! | ACCCTCTGAAGTTTCGTCGC+CGG | + | chr3.3:77440111-77440130 | MS.gene06606:intron | 55.0% |
| !! | CGTCGGTTCAGGTCATCTTG+TGG | + | chr3.3:77440220-77440239 | MS.gene06606:intron | 55.0% |
| !! | GATCAAGAAGCCGTCGGTTC+AGG | + | chr3.3:77440209-77440228 | MS.gene06606:intron | 55.0% |
| !! | GATTGTTGGGCACTGAGCAG+AGG | + | chr3.3:77440747-77440766 | MS.gene06606:intron | 55.0% |
| CTCCGGCGACGAAACTTCAG+AGG | - | chr3.3:77440116-77440135 | None:intergenic | 60.0% | |
| GGCGACGAAACTTCAGAGGG+TGG | - | chr3.3:77440112-77440131 | None:intergenic | 60.0% | |
| GTGGCGGCTTCGTCACCATA+AGG | + | chr3.3:77440076-77440095 | MS.gene06606:intron | 60.0% | |
| ACCAACGCGCAACCAACGGG+CGG | - | chr3.3:77438838-77438857 | None:intergenic | 65.0% | |
| CGGGCGGCCCAGCTTCGAGT+TGG | - | chr3.3:77438822-77438841 | None:intergenic | 75.0% | |
| CTCGAAGCTGGGCCGCCCGT+TGG | + | chr3.3:77438823-77438842 | MS.gene06606:CDS | 75.0% | |
| ! | GCCGCCCGTTGGTTGCGCGT+TGG | + | chr3.3:77438834-77438853 | MS.gene06606:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77438164 | 77441943 | 77438164 | ID=MS.gene06606 |
| chr3.3 | mRNA | 77438164 | 77441943 | 77438164 | ID=MS.gene06606.t1;Parent=MS.gene06606 |
| chr3.3 | exon | 77438164 | 77438253 | 77438164 | ID=MS.gene06606.t1.exon1;Parent=MS.gene06606.t1 |
| chr3.3 | CDS | 77438164 | 77438253 | 77438164 | ID=cds.MS.gene06606.t1;Parent=MS.gene06606.t1 |
| chr3.3 | exon | 77438615 | 77438706 | 77438615 | ID=MS.gene06606.t1.exon2;Parent=MS.gene06606.t1 |
| chr3.3 | CDS | 77438615 | 77438706 | 77438615 | ID=cds.MS.gene06606.t1;Parent=MS.gene06606.t1 |
| chr3.3 | exon | 77438800 | 77438855 | 77438800 | ID=MS.gene06606.t1.exon3;Parent=MS.gene06606.t1 |
| chr3.3 | CDS | 77438800 | 77438855 | 77438800 | ID=cds.MS.gene06606.t1;Parent=MS.gene06606.t1 |
| chr3.3 | exon | 77441207 | 77441268 | 77441207 | ID=MS.gene06606.t1.exon4;Parent=MS.gene06606.t1 |
| chr3.3 | CDS | 77441207 | 77441268 | 77441207 | ID=cds.MS.gene06606.t1;Parent=MS.gene06606.t1 |
| chr3.3 | exon | 77441893 | 77441943 | 77441893 | ID=MS.gene06606.t1.exon5;Parent=MS.gene06606.t1 |
| chr3.3 | CDS | 77441893 | 77441943 | 77441893 | ID=cds.MS.gene06606.t1;Parent=MS.gene06606.t1 |
| Gene Sequence |
| Protein sequence |
