Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057248.t1 | XP_003602382.1 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.10E-63 | 249.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057248.t1 | Q94C60 | 80.0 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 5.7e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057248.t1 | G7J900 | 99.1 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 5.1e-63 | 249.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057248 | MS.gene42075 | PPI |
| MS.gene76728 | MS.gene057248 | PPI |
| MS.gene057248 | MS.gene48819 | PPI |
| MS.gene06606 | MS.gene057248 | PPI |
| MS.gene057248 | MS.gene013499 | PPI |
| MS.gene87064 | MS.gene057248 | PPI |
| MS.gene057248 | MS.gene82237 | PPI |
| MS.gene057248 | MS.gene06819 | PPI |
| MS.gene057248 | MS.gene77045 | PPI |
| MS.gene057248 | MS.gene87743 | PPI |
| MS.gene057248 | MS.gene06606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057248.t1 | MTR_3g092730 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| MS.gene057248.t1 | MTR_3g092770 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 7.37e-86 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057248.t1 | AT5G63670 | 80.000 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 2.36e-69 | 203 |
| MS.gene057248.t1 | AT5G08565 | 77.391 | 115 | 26 | 0 | 1 | 115 | 1 | 115 | 4.94e-66 | 195 |
| MS.gene057248.t1 | AT5G08565 | 66.087 | 115 | 39 | 0 | 1 | 115 | 1 | 115 | 1.25e-51 | 159 |
| MS.gene057248.t1 | AT5G63670 | 87.342 | 79 | 10 | 0 | 1 | 79 | 1 | 79 | 1.27e-49 | 153 |
Find 28 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGACAAACCCGTTAAAAT+TGG | 0.240208 | 3.2:-78063821 | None:intergenic |
| GAACGTTTGGGAAGCGTATA+TGG | 0.267594 | 3.2:-78067041 | None:intergenic |
| TTACTTGTTTCACGAACGTT+TGG | 0.361888 | 3.2:-78067054 | None:intergenic |
| TTTCAGGATCATTTCTGTAA+TGG | 0.372050 | 3.2:+78063921 | MS.gene057248:intron |
| AGGACAAACCCGTTAAAATT+GGG | 0.387784 | 3.2:-78063820 | None:intergenic |
| GGTTTGCAGTTTAGGGAGTC+AGG | 0.390331 | 3.2:+78063733 | MS.gene057248:intron |
| AATTCATGTCCAAAGCTTGT+AGG | 0.398605 | 3.2:-78063315 | None:intergenic |
| GCTCAAATTCCTACAAGCTT+TGG | 0.399271 | 3.2:+78063306 | MS.gene057248:CDS |
| TAATGGATCCAACTCGAAGC+TGG | 0.432372 | 3.2:+78063938 | MS.gene057248:CDS |
| GTTGCAGGAAAATTTGTTCC+TGG | 0.441087 | 3.2:+78066324 | MS.gene057248:intron |
| AAGCTTTGGACATGAATTGA+GGG | 0.465856 | 3.2:+78063320 | MS.gene057248:CDS |
| ATACAAACCTGCATATCGTC+TGG | 0.468215 | 3.2:-78066378 | None:intergenic |
| CATACCAACGCGCAACCAAC+GGG | 0.485925 | 3.2:-78063965 | None:intergenic |
| CTCGAAGCTGGGCTGCCCGT+TGG | 0.489483 | 3.2:+78063950 | MS.gene057248:CDS |
| TACTTGTTTCACGAACGTTT+GGG | 0.492974 | 3.2:-78067053 | None:intergenic |
| GGCTCTTCCAGACGATATGC+AGG | 0.493041 | 3.2:+78066371 | MS.gene057248:CDS |
| CAAGCTTTGGACATGAATTG+AGG | 0.494858 | 3.2:+78063319 | MS.gene057248:CDS |
| CCTTGTCAAAACCTACGATC+AGG | 0.523824 | 3.2:+78063359 | MS.gene057248:CDS |
| CGGGCAGCCCAGCTTCGAGT+TGG | 0.556890 | 3.2:-78063946 | None:intergenic |
| AATGGATCCAACTCGAAGCT+GGG | 0.572441 | 3.2:+78063939 | MS.gene057248:CDS |
| ACATACCAACGCGCAACCAA+CGG | 0.585240 | 3.2:-78063966 | None:intergenic |
| GGACAAACCCGTTAAAATTG+GGG | 0.590799 | 3.2:-78063819 | None:intergenic |
| AAGCTTGTAGGAATTTGAGC+AGG | 0.591537 | 3.2:-78063303 | None:intergenic |
| TTACACTCTTGCTGTCTCAG+AGG | 0.600043 | 3.2:+78066350 | MS.gene057248:CDS |
| GCTGCCCGTTGGTTGCGCGT+TGG | 0.609160 | 3.2:+78063961 | MS.gene057248:CDS |
| GGTCAGTAAGACCTGATCGT+AGG | 0.658939 | 3.2:-78063370 | None:intergenic |
| ACAGCAAGAGTGTAAACACC+AGG | 0.664978 | 3.2:-78066342 | None:intergenic |
| GACAAACCCGTTAAAATTGG+GGG | 0.690023 | 3.2:-78063818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATTATAATAATGTAAA+GGG | - | chr3.2:78064053-78064072 | None:intergenic | 10.0% |
| !! | ATAAGTATTATTCAATGTTT+AGG | - | chr3.2:78064537-78064556 | None:intergenic | 15.0% |
| !! | CTATCATTATAATAATGTAA+AGG | - | chr3.2:78064054-78064073 | None:intergenic | 15.0% |
| !! | TTTCAAAATTCAAATTTAAC+TGG | - | chr3.2:78065956-78065975 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTTTGTGTATT+AGG | - | chr3.2:78066890-78066909 | None:intergenic | 15.0% |
| !!! | AATTTGACTTTAGTTTTTTT+TGG | + | chr3.2:78066541-78066560 | MS.gene057248:intron | 15.0% |
| !!! | ATTTGACTTTAGTTTTTTTT+GGG | + | chr3.2:78066542-78066561 | MS.gene057248:intron | 15.0% |
| !!! | TAATACTTATATTTTGTCTA+TGG | + | chr3.2:78064547-78064566 | MS.gene057248:intron | 15.0% |
| !!! | TTTTATTTTCTTTTAAAGTC+TGG | + | chr3.2:78065153-78065172 | MS.gene057248:intron | 15.0% |
| !! | AGAATTGATTATGACATTAT+TGG | + | chr3.2:78063465-78063484 | MS.gene057248:intron | 20.0% |
| !! | CTAACAAAAATTAAGTTATG+TGG | + | chr3.2:78064442-78064461 | MS.gene057248:intron | 20.0% |
| !! | TATAGTACTGTTTAATGTTT+AGG | + | chr3.2:78065024-78065043 | MS.gene057248:intron | 20.0% |
| !!! | ATAAACTAATGATCTAAGAT+AGG | - | chr3.2:78065598-78065617 | None:intergenic | 20.0% |
| !!! | ATTCTGTAAAATTTTGATTC+TGG | - | chr3.2:78063632-78063651 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGTTATAAAGAAA+GGG | + | chr3.2:78066010-78066029 | MS.gene057248:intron | 20.0% |
| !!! | CTTTTATCCATTAATTTAAC+TGG | + | chr3.2:78066587-78066606 | MS.gene057248:intron | 20.0% |
| !!! | CTTTTTTGTTATAAAGAAAG+GGG | + | chr3.2:78066011-78066030 | MS.gene057248:intron | 20.0% |
| !!! | GAAGAGTACAAAATTTAATT+AGG | - | chr3.2:78064583-78064602 | None:intergenic | 20.0% |
| !!! | GTTATACAATGTTTTGATTA+TGG | + | chr3.2:78065791-78065810 | MS.gene057248:intron | 20.0% |
| !!! | TCCTTTTTTGTTATAAAGAA+AGG | + | chr3.2:78066009-78066028 | MS.gene057248:intron | 20.0% |
| !!! | TCTAAAATAGAAAAACTAGA+CGG | - | chr3.2:78066234-78066253 | None:intergenic | 20.0% |
| !!! | TTATTCTTTTTCTTTTGCAA+AGG | + | chr3.2:78066633-78066652 | MS.gene057248:intron | 20.0% |
| !!! | TTTGACTTTAGTTTTTTTTG+GGG | + | chr3.2:78066543-78066562 | MS.gene057248:intron | 20.0% |
| ! | AAACAAAATCTGTGTATGTT+TGG | - | chr3.2:78063684-78063703 | None:intergenic | 25.0% |
| ! | ACACATGTAATACATAGATT+TGG | - | chr3.2:78064892-78064911 | None:intergenic | 25.0% |
| ! | ACACATGTAATCCATAAATT+TGG | - | chr3.2:78064319-78064338 | None:intergenic | 25.0% |
| ! | AGAACAATATGGAAAATTAC+TGG | - | chr3.2:78065527-78065546 | None:intergenic | 25.0% |
| ! | ATTCGTATATGCTTCTTATA+AGG | - | chr3.2:78064722-78064741 | None:intergenic | 25.0% |
| ! | CCCTTTCTTTATAACAAAAA+AGG | - | chr3.2:78066013-78066032 | None:intergenic | 25.0% |
| ! | GAAATCTCTAGTACTTATTA+TGG | + | chr3.2:78065564-78065583 | MS.gene057248:intron | 25.0% |
| ! | GTGATTTCATGTTAGAATTT+GGG | - | chr3.2:78065677-78065696 | None:intergenic | 25.0% |
| ! | TATCCATTAATTTAACTGGT+CGG | + | chr3.2:78066591-78066610 | MS.gene057248:intron | 25.0% |
| ! | TGATGTAAATAGATATGACA+AGG | - | chr3.2:78063843-78063862 | None:intergenic | 25.0% |
| ! | TGTGATTTCATGTTAGAATT+TGG | - | chr3.2:78065678-78065697 | None:intergenic | 25.0% |
| ! | TTTGCCAATAATGTCTAATA+AGG | + | chr3.2:78065707-78065726 | MS.gene057248:intron | 25.0% |
| !! | AAGTTTTTCTTATATGTTGC+AGG | + | chr3.2:78066309-78066328 | MS.gene057248:intron | 25.0% |
| !! | AATTTTGTATTCCTCTTTCT+AGG | - | chr3.2:78064972-78064991 | None:intergenic | 25.0% |
| !! | ACCTACATCTAAAATGTTTA+AGG | - | chr3.2:78065773-78065792 | None:intergenic | 25.0% |
| !! | TCCTTAAACATTTTAGATGT+AGG | + | chr3.2:78065769-78065788 | MS.gene057248:intron | 25.0% |
| !!! | AATGTTTTGATTATGGAAGA+TGG | + | chr3.2:78065798-78065817 | MS.gene057248:intron | 25.0% |
| !!! | AATTATTGTTTTTGAGAGAG+TGG | - | chr3.2:78066525-78066544 | None:intergenic | 25.0% |
| !!! | ACTTTAGAATCAGATACAAA+TGG | + | chr3.2:78064166-78064185 | MS.gene057248:intron | 25.0% |
| !!! | ATATGTTTGTTTCTCCTTTT+AGG | + | chr3.2:78063418-78063437 | MS.gene057248:intron | 25.0% |
| !!! | ATGTTTTGATTATGGAAGAT+GGG | + | chr3.2:78065799-78065818 | MS.gene057248:intron | 25.0% |
| !!! | ATTACCAGTTTTTAATTCAG+AGG | - | chr3.2:78066049-78066068 | None:intergenic | 25.0% |
| !!! | ATTTTGATTCTGGTTAAAAG+TGG | - | chr3.2:78063622-78063641 | None:intergenic | 25.0% |
| !!! | CTTTAGAATCAGATACAAAT+GGG | + | chr3.2:78064167-78064186 | MS.gene057248:intron | 25.0% |
| !!! | GCAAAGGTGTTAAAAATTTA+GGG | + | chr3.2:78066649-78066668 | MS.gene057248:intron | 25.0% |
| !!! | TATGTTTGTTTCTCCTTTTA+GGG | + | chr3.2:78063419-78063438 | MS.gene057248:intron | 25.0% |
| !!! | TCTTCATCAATTTGATTTTC+AGG | + | chr3.2:78063905-78063924 | MS.gene057248:intron | 25.0% |
| !!! | TGCAAAGGTGTTAAAAATTT+AGG | + | chr3.2:78066648-78066667 | MS.gene057248:intron | 25.0% |
| !!! | TTGACTTTAGTTTTTTTTGG+GGG | + | chr3.2:78066544-78066563 | MS.gene057248:intron | 25.0% |
| !!! | TTTCAACCTTTTGGTTAAAA+GGG | + | chr3.2:78064362-78064381 | MS.gene057248:intron | 25.0% |
| !!! | TTTTGATTCTGGTTAAAAGT+GGG | - | chr3.2:78063621-78063640 | None:intergenic | 25.0% |
| AAAGAAAACTGAAAGGCAAT+GGG | - | chr3.2:78064030-78064049 | None:intergenic | 30.0% | |
| AATCAATAATGTCCCCTAAA+AGG | - | chr3.2:78063435-78063454 | None:intergenic | 30.0% | |
| ACTAAGAATAGTGAGAGAAA+GGG | - | chr3.2:78063398-78063417 | None:intergenic | 30.0% | |
| AGTACCTCTGAATTAAAAAC+TGG | + | chr3.2:78066042-78066061 | MS.gene057248:intron | 30.0% | |
| ATTGAAAATCTCAACTCACA+AGG | - | chr3.2:78066716-78066735 | None:intergenic | 30.0% | |
| CACAAATAGAAAAACAGAGA+CGG | - | chr3.2:78065468-78065487 | None:intergenic | 30.0% | |
| CCAATAATGTCTAATAAGGA+AGG | + | chr3.2:78065711-78065730 | MS.gene057248:intron | 30.0% | |
| CCTTCCTTATTAGACATTAT+TGG | - | chr3.2:78065714-78065733 | None:intergenic | 30.0% | |
| CTGGTCGGATATAAAATATT+TGG | + | chr3.2:78066606-78066625 | MS.gene057248:intron | 30.0% | |
| CTTCTTCCATCTGTAAAAAT+GGG | - | chr3.2:78063771-78063790 | None:intergenic | 30.0% | |
| GATAAGATGATACAAGAGAA+AGG | - | chr3.2:78066922-78066941 | None:intergenic | 30.0% | |
| GATAGTAAGTTCAGATTGTT+GGG | + | chr3.2:78065858-78065877 | MS.gene057248:intron | 30.0% | |
| GTAATCCATAAATTTGGTTG+TGG | - | chr3.2:78064313-78064332 | None:intergenic | 30.0% | |
| GTATTACATGTGTTGAGTTA+TGG | + | chr3.2:78064899-78064918 | MS.gene057248:intron | 30.0% | |
| TAAAGGGAAAGAAAACTGAA+AGG | - | chr3.2:78064037-78064056 | None:intergenic | 30.0% | |
| TACTAAGAATAGTGAGAGAA+AGG | - | chr3.2:78063399-78063418 | None:intergenic | 30.0% | |
| TACTTGACCATTTAACCAAA+AGG | + | chr3.2:78064618-78064637 | MS.gene057248:intron | 30.0% | |
| TATAAATAATCCCTGTGTTC+TGG | + | chr3.2:78063712-78063731 | MS.gene057248:intron | 30.0% | |
| TATCCGACCAGTTAAATTAA+TGG | - | chr3.2:78066597-78066616 | None:intergenic | 30.0% | |
| TCTTCTTCCATCTGTAAAAA+TGG | - | chr3.2:78063772-78063791 | None:intergenic | 30.0% | |
| TGATAGTAAGTTCAGATTGT+TGG | + | chr3.2:78065857-78065876 | MS.gene057248:intron | 30.0% | |
| TTGATCAAAACGATTTACGA+CGG | - | chr3.2:78065321-78065340 | None:intergenic | 30.0% | |
| TTTCAGGATCATTTCTGTAA+TGG | + | chr3.2:78063921-78063940 | MS.gene057248:intron | 30.0% | |
| TTTGGTTAAATGGTCAAGTA+AGG | - | chr3.2:78064618-78064637 | None:intergenic | 30.0% | |
| ! | AAGTTATGGATTACATGTGT+TGG | - | chr3.2:78064102-78064121 | None:intergenic | 30.0% |
| ! | AATTTTGCATTCCTCTTTCT+AGG | - | chr3.2:78064400-78064419 | None:intergenic | 30.0% |
| ! | AGGAGTATATAACCATTTAG+TGG | + | chr3.2:78065731-78065750 | MS.gene057248:intron | 30.0% |
| ! | ATTTTCAATAAATGCCCAAG+TGG | + | chr3.2:78066727-78066746 | MS.gene057248:intron | 30.0% |
| ! | GTAATACATAGATTTGGTTG+TGG | - | chr3.2:78064886-78064905 | None:intergenic | 30.0% |
| ! | TAGTATGTTGTTTACACTCA+TGG | - | chr3.2:78064510-78064529 | None:intergenic | 30.0% |
| ! | TGGTAATGTAATTTAGTGAG+TGG | + | chr3.2:78066062-78066081 | MS.gene057248:intron | 30.0% |
| !! | ATGTTTGTTTCTCCTTTTAG+GGG | + | chr3.2:78063420-78063439 | MS.gene057248:intron | 30.0% |
| !! | GTTTCAACCTTTTGGTTAAA+AGG | + | chr3.2:78064361-78064380 | MS.gene057248:intron | 30.0% |
| !! | GTTTCTACCTTTTGGTTAAA+TGG | - | chr3.2:78064628-78064647 | None:intergenic | 30.0% |
| !! | TAATTCAGAGGTACTAATAC+AGG | - | chr3.2:78066037-78066056 | None:intergenic | 30.0% |
| !!! | TAGTTTTGTAAGGTTGAGTT+AGG | + | chr3.2:78065646-78065665 | MS.gene057248:intron | 30.0% |
| !!! | TGACTTTAGTTTTTTTTGGG+GGG | + | chr3.2:78066545-78066564 | MS.gene057248:intron | 30.0% |
| AAATGGGAGACAACATTATG+TGG | + | chr3.2:78064183-78064202 | MS.gene057248:intron | 35.0% | |
| AAGGACAAACCCGTTAAAAT+TGG | - | chr3.2:78063824-78063843 | None:intergenic | 35.0% | |
| AATTCATGTCCAAAGCTTGT+AGG | - | chr3.2:78063318-78063337 | None:intergenic | 35.0% | |
| ACTAGAGATTTCTGCCATTA+AGG | - | chr3.2:78065556-78065575 | None:intergenic | 35.0% | |
| AGAAGCTTCAAAGGTGATTA+GGG | - | chr3.2:78063869-78063888 | None:intergenic | 35.0% | |
| AGACAATCTTAAGACTGCAA+GGG | - | chr3.2:78065493-78065512 | None:intergenic | 35.0% | |
| AGAGAGTGGCATAAAAAAAG+AGG | - | chr3.2:78066511-78066530 | None:intergenic | 35.0% | |
| AGCTTCAAGTGAATCAATTC+CGG | - | chr3.2:78063517-78063536 | None:intergenic | 35.0% | |
| AGGACAAACCCGTTAAAATT+GGG | - | chr3.2:78063823-78063842 | None:intergenic | 35.0% | |
| ATGACATTCAGAAGCTTCAA+AGG | - | chr3.2:78063878-78063897 | None:intergenic | 35.0% | |
| ATTATGGAAGATGGGCATAA+AGG | + | chr3.2:78065807-78065826 | MS.gene057248:intron | 35.0% | |
| ATTGTTCTCATCGTCCTTAA+TGG | + | chr3.2:78065539-78065558 | MS.gene057248:intron | 35.0% | |
| CAATCTGAACTTACTATCAC+AGG | - | chr3.2:78065856-78065875 | None:intergenic | 35.0% | |
| CACAAATGAAAATTCTCTCC+AGG | - | chr3.2:78066112-78066131 | None:intergenic | 35.0% | |
| CTAAAGTAGTGCATCTACTA+TGG | - | chr3.2:78064153-78064172 | None:intergenic | 35.0% | |
| CTCAACCACAACCAAATTTA+TGG | + | chr3.2:78064305-78064324 | MS.gene057248:intron | 35.0% | |
| CTCACAAATAGCCTGAAAAT+GGG | - | chr3.2:78067009-78067028 | None:intergenic | 35.0% | |
| GAAAGAAAACTGAAAGGCAA+TGG | - | chr3.2:78064031-78064050 | None:intergenic | 35.0% | |
| GATTACATGTGTTGGAGTTA+CGG | - | chr3.2:78064663-78064682 | None:intergenic | 35.0% | |
| GCATTCACATCTTCTTGTTA+TGG | + | chr3.2:78064827-78064846 | MS.gene057248:intron | 35.0% | |
| GTAATCCATAACTTCGACTA+TGG | + | chr3.2:78064108-78064127 | MS.gene057248:intron | 35.0% | |
| GTAATCCATAACTTCGATTG+TGG | + | chr3.2:78064677-78064696 | MS.gene057248:intron | 35.0% | |
| GTGATTACCAATTCGTACAA+CGG | - | chr3.2:78064213-78064232 | None:intergenic | 35.0% | |
| TAAGGACGATGAGAACAATA+TGG | - | chr3.2:78065538-78065557 | None:intergenic | 35.0% | |
| TAGTACATTCTATACTCTCG+CGG | + | chr3.2:78065051-78065070 | MS.gene057248:intron | 35.0% | |
| TCAAATGCTGTTGAACGAAT+TGG | + | chr3.2:78064758-78064777 | MS.gene057248:intron | 35.0% | |
| TCTCTCATTCACATCTACTA+TGG | + | chr3.2:78064268-78064287 | MS.gene057248:intron | 35.0% | |
| TGGTTAAAAGGGTTCAAGTA+AGG | + | chr3.2:78064373-78064392 | MS.gene057248:intron | 35.0% | |
| TGTCAGATACAACCACTAAA+TGG | - | chr3.2:78065746-78065765 | None:intergenic | 35.0% | |
| TTATGGAAGATGGGCATAAA+GGG | + | chr3.2:78065808-78065827 | MS.gene057248:intron | 35.0% | |
| TTCAACCATAGTCGAAGTTA+TGG | - | chr3.2:78064116-78064135 | None:intergenic | 35.0% | |
| ! | CTTGAACCCTTTTAACCAAA+AGG | - | chr3.2:78064371-78064390 | None:intergenic | 35.0% |
| ! | GTTCTGTAGTTTCTACCTTT+TGG | - | chr3.2:78064636-78064655 | None:intergenic | 35.0% |
| ! | TAACAATCCGTCAGACTTTT+CGG | + | chr3.2:78065278-78065297 | MS.gene057248:intron | 35.0% |
| !! | AAAAGTCTGACGGATTGTTA+TGG | - | chr3.2:78065278-78065297 | None:intergenic | 35.0% |
| !! | AAGCTTTGGACATGAATTGA+GGG | + | chr3.2:78063320-78063339 | MS.gene057248:CDS | 35.0% |
| !! | AGTTTCAACCTTTTGGTTAG+AGG | + | chr3.2:78064933-78064952 | MS.gene057248:intron | 35.0% |
| !! | CAAGTAGTATTGATTGTCTC+CGG | + | chr3.2:78063495-78063514 | MS.gene057248:intron | 35.0% |
| !! | GTTTCAACCTTTTGGTTAGA+GGG | + | chr3.2:78064934-78064953 | MS.gene057248:intron | 35.0% |
| !! | TTAGGGGACATTATTGATTC+TGG | + | chr3.2:78063436-78063455 | MS.gene057248:intron | 35.0% |
| !! | TTCTGGTTAAAAGTGGGTTA+AGG | - | chr3.2:78063615-78063634 | None:intergenic | 35.0% |
| !!! | GACTTTAGTTTTTTTTGGGG+GGG | + | chr3.2:78066546-78066565 | MS.gene057248:intron | 35.0% |
| AAACTGCAAACCAGAACACA+GGG | - | chr3.2:78063725-78063744 | None:intergenic | 40.0% | |
| AAGCTTGTAGGAATTTGAGC+AGG | - | chr3.2:78063306-78063325 | None:intergenic | 40.0% | |
| AAGGTGAAGCGATTTGTGTT+TGG | - | chr3.2:78063596-78063615 | None:intergenic | 40.0% | |
| AATCTCAACTCACAAGGCAA+CGG | - | chr3.2:78066710-78066729 | None:intergenic | 40.0% | |
| ACCAAAAGGTTGAAACTGCA+AGG | - | chr3.2:78064357-78064376 | None:intergenic | 40.0% | |
| ACTATTGTGTGATTGACACC+TGG | + | chr3.2:78066091-78066110 | MS.gene057248:intron | 40.0% | |
| ACTTGAACCCTCTAACCAAA+AGG | - | chr3.2:78064944-78064963 | None:intergenic | 40.0% | |
| AGAATAGTGAGAGAAAGGGA+AGG | - | chr3.2:78063394-78063413 | None:intergenic | 40.0% | |
| AGACAAACGACCTCAAAAAC+AGG | - | chr3.2:78065384-78065403 | None:intergenic | 40.0% | |
| AGACAATGAGTGAAGAGCAA+GGG | - | chr3.2:78065438-78065457 | None:intergenic | 40.0% | |
| AGCAAAGAGATGGATAGAAG+AGG | + | chr3.2:78065912-78065931 | MS.gene057248:intron | 40.0% | |
| ATACAAACCTGCATATCGTC+TGG | - | chr3.2:78066381-78066400 | None:intergenic | 40.0% | |
| CAGAAGCTTCAAAGGTGATT+AGG | - | chr3.2:78063870-78063889 | None:intergenic | 40.0% | |
| CAGACAATCTTAAGACTGCA+AGG | - | chr3.2:78065494-78065513 | None:intergenic | 40.0% | |
| CCAAAAGGTTGAAACTGCAA+GGG | - | chr3.2:78064356-78064375 | None:intergenic | 40.0% | |
| CCTCACAAATAGCCTGAAAA+TGG | - | chr3.2:78067010-78067029 | None:intergenic | 40.0% | |
| CTCAACCACAATCGAAGTTA+TGG | - | chr3.2:78064685-78064704 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAAGATTGTC+TGG | + | chr3.2:78065492-78065511 | MS.gene057248:intron | 40.0% | |
| GAAGCGATTTGTGTTTGGAT+AGG | - | chr3.2:78063591-78063610 | None:intergenic | 40.0% | |
| GACAAACCCGTTAAAATTGG+GGG | - | chr3.2:78063821-78063840 | None:intergenic | 40.0% | |
| GCCAAACAGTATAACCACTT+GGG | - | chr3.2:78066744-78066763 | None:intergenic | 40.0% | |
| GCTCAAATTCCTACAAGCTT+TGG | + | chr3.2:78063306-78063325 | MS.gene057248:CDS | 40.0% | |
| GGACAAACCCGTTAAAATTG+GGG | - | chr3.2:78063822-78063841 | None:intergenic | 40.0% | |
| GTGGTTATACTGTTTGGCAA+TGG | + | chr3.2:78066746-78066765 | MS.gene057248:intron | 40.0% | |
| TAAACTGCAAACCAGAACAC+AGG | - | chr3.2:78063726-78063745 | None:intergenic | 40.0% | |
| TAGATGTGAATGAGAGACAG+CGG | - | chr3.2:78064265-78064284 | None:intergenic | 40.0% | |
| TCAAGATCGTATTCAGAGCT+TGG | + | chr3.2:78065114-78065133 | MS.gene057248:intron | 40.0% | |
| TCAAGTAAGGTCCTAGAAAG+AGG | + | chr3.2:78064386-78064405 | MS.gene057248:intron | 40.0% | |
| TGCCAAACAGTATAACCACT+TGG | - | chr3.2:78066745-78066764 | None:intergenic | 40.0% | |
| TGGCAATGGCAACTAAGATT+AGG | + | chr3.2:78066760-78066779 | MS.gene057248:intron | 40.0% | |
| TTGGTTAGAGGGTTCAAGTA+AGG | + | chr3.2:78064945-78064964 | MS.gene057248:intron | 40.0% | |
| TTTGTACTCTTCCTCCTTCT+TGG | + | chr3.2:78064591-78064610 | MS.gene057248:intron | 40.0% | |
| ! | AAAACTAGCCTGTAAGGTGA+GGG | - | chr3.2:78065633-78065652 | None:intergenic | 40.0% |
| ! | AATGGATAAAAGCACAGCCT+AGG | - | chr3.2:78066579-78066598 | None:intergenic | 40.0% |
| ! | ACCTCAAAAACAGGTTGAAG+AGG | - | chr3.2:78065375-78065394 | None:intergenic | 40.0% |
| ! | ATGGATAAAAGCACAGCCTA+GGG | - | chr3.2:78066578-78066597 | None:intergenic | 40.0% |
| ! | CCTTACAAAACTAGCCTGTA+AGG | - | chr3.2:78065639-78065658 | None:intergenic | 40.0% |
| ! | GCTTTGCAGTTTCAACCTTT+TGG | + | chr3.2:78064926-78064945 | MS.gene057248:intron | 40.0% |
| ! | GGATTACATGTGTTGAGTTG+TGG | + | chr3.2:78064326-78064345 | MS.gene057248:intron | 40.0% |
| ! | GTTGCAGGAAAATTTGTTCC+TGG | + | chr3.2:78066324-78066343 | MS.gene057248:intron | 40.0% |
| ! | GTTGTGGTTGAGTTGCAATT+TGG | - | chr3.2:78064297-78064316 | None:intergenic | 40.0% |
| ! | TTGCGTATATGCCCATTTTC+AGG | + | chr3.2:78066995-78067014 | MS.gene057248:intron | 40.0% |
| !! | CAAGCTTTGGACATGAATTG+AGG | + | chr3.2:78063319-78063338 | MS.gene057248:CDS | 40.0% |
| !! | CCATTTTCAGGCTATTTGTG+AGG | + | chr3.2:78067007-78067026 | MS.gene057248:intron | 40.0% |
| !! | GAACTGCCCATTTTTACAGA+TGG | + | chr3.2:78063762-78063781 | MS.gene057248:CDS | 40.0% |
| !! | GTGTTCTGGTTTGCAGTTTA+GGG | + | chr3.2:78063726-78063745 | MS.gene057248:intron | 40.0% |
| !! | TGTGTTCTGGTTTGCAGTTT+AGG | + | chr3.2:78063725-78063744 | MS.gene057248:intron | 40.0% |
| !!! | CCTTACAGGCTAGTTTTGTA+AGG | + | chr3.2:78065636-78065655 | MS.gene057248:intron | 40.0% |
| AAACCCGTTAAAATTGGGGG+TGG | - | chr3.2:78063818-78063837 | None:intergenic | 45.0% | |
| AAACGATTTACGACGGCAAG+TGG | - | chr3.2:78065314-78065333 | None:intergenic | 45.0% | |
| AATGGATCCAACTCGAAGCT+GGG | + | chr3.2:78063939-78063958 | MS.gene057248:CDS | 45.0% | |
| ATACGTGCCGAAAAGTCTGA+CGG | - | chr3.2:78065288-78065307 | None:intergenic | 45.0% | |
| ATGGTGAGTGGGAAATTCTC+CGG | - | chr3.2:78065259-78065278 | None:intergenic | 45.0% | |
| CAGACAATGAGTGAAGAGCA+AGG | - | chr3.2:78065439-78065458 | None:intergenic | 45.0% | |
| CCTTGTCAAAACCTACGATC+AGG | + | chr3.2:78063359-78063378 | MS.gene057248:CDS | 45.0% | |
| GAATGCGAGACAACAGTATG+TGG | - | chr3.2:78064813-78064832 | None:intergenic | 45.0% | |
| GCCCAAGTGGTTATACTGTT+TGG | + | chr3.2:78066740-78066759 | MS.gene057248:intron | 45.0% | |
| TCAAGTAAGGTCCAAGAAGG+AGG | - | chr3.2:78064605-78064624 | None:intergenic | 45.0% | |
| TCTACAGTAGACATGTGTGG+CGG | + | chr3.2:78065186-78065205 | MS.gene057248:intron | 45.0% | |
| TCTTGCACACAACTGAGATG+TGG | + | chr3.2:78066280-78066299 | MS.gene057248:intron | 45.0% | |
| TGGAATGCCGTTGTACGAAT+TGG | + | chr3.2:78064203-78064222 | MS.gene057248:intron | 45.0% | |
| TGGTCAAGTAAGGTCCAAGA+AGG | - | chr3.2:78064608-78064627 | None:intergenic | 45.0% | |
| ! | AAACTAGCCTGTAAGGTGAG+GGG | - | chr3.2:78065632-78065651 | None:intergenic | 45.0% |
| ! | ACAGCAAGAGTGTAAACACC+AGG | - | chr3.2:78066345-78066364 | None:intergenic | 45.0% |
| ! | CAAAACTAGCCTGTAAGGTG+AGG | - | chr3.2:78065634-78065653 | None:intergenic | 45.0% |
| ! | CCCTTGCAGTTTCAACCTTT+TGG | + | chr3.2:78064353-78064372 | MS.gene057248:intron | 45.0% |
| ! | GAACGTTTGGGAAGCGTATA+TGG | - | chr3.2:78067044-78067063 | None:intergenic | 45.0% |
| ! | TAATGGATCCAACTCGAAGC+TGG | + | chr3.2:78063938-78063957 | MS.gene057248:CDS | 45.0% |
| ! | TCAGACTTTTCGGCACGTAT+AGG | + | chr3.2:78065288-78065307 | MS.gene057248:intron | 45.0% |
| ! | TGCACCACCCCCAATTTTAA+CGG | + | chr3.2:78063811-78063830 | MS.gene057248:CDS | 45.0% |
| ! | TGGATAAAAGCACAGCCTAG+GGG | - | chr3.2:78066577-78066596 | None:intergenic | 45.0% |
| ! | TTACACTCTTGCTGTCTCAG+AGG | + | chr3.2:78066350-78066369 | MS.gene057248:CDS | 45.0% |
| !! | CCTGATCGTAGGTTTTGACA+AGG | - | chr3.2:78063362-78063381 | None:intergenic | 45.0% |
| !! | CGTTTTGATCAAGAAGCCGT+CGG | + | chr3.2:78065329-78065348 | MS.gene057248:intron | 45.0% |
| !! | GACGGATTGTTATGGTGAGT+GGG | - | chr3.2:78065270-78065289 | None:intergenic | 45.0% |
| !! | GATCGTAGGTTTTGACAAGG+CGG | - | chr3.2:78063359-78063378 | None:intergenic | 45.0% |
| !! | GGGGACATTATTGATTCTGG+AGG | + | chr3.2:78063439-78063458 | MS.gene057248:intron | 45.0% |
| !! | TAGGGAAGCTCTAAACACAC+AGG | + | chr3.2:78066667-78066686 | MS.gene057248:intron | 45.0% |
| !! | TGACGGATTGTTATGGTGAG+TGG | - | chr3.2:78065271-78065290 | None:intergenic | 45.0% |
| !!! | GCCTCTTCAACCTGTTTTTG+AGG | + | chr3.2:78065371-78065390 | MS.gene057248:intron | 45.0% |
| ACATACCAACGCGCAACCAA+CGG | - | chr3.2:78063969-78063988 | None:intergenic | 50.0% | |
| AGTGAAGAGCAAGGGTTTGC+TGG | - | chr3.2:78065430-78065449 | None:intergenic | 50.0% | |
| ATGGGCAGAGAGCAAAGAGA+TGG | + | chr3.2:78065902-78065921 | MS.gene057248:intron | 50.0% | |
| CACAAGATGACCTGAACCGA+CGG | - | chr3.2:78065348-78065367 | None:intergenic | 50.0% | |
| CACATGTCTACTGTAGAGCG+TGG | - | chr3.2:78065183-78065202 | None:intergenic | 50.0% | |
| CGCTCTACAGTAGACATGTG+TGG | + | chr3.2:78065183-78065202 | MS.gene057248:intron | 50.0% | |
| GGTCAGTAAGACCTGATCGT+AGG | - | chr3.2:78063373-78063392 | None:intergenic | 50.0% | |
| GGTTTGCAGTTTAGGGAGTC+AGG | + | chr3.2:78063733-78063752 | MS.gene057248:intron | 50.0% | |
| TGAGCAGAGGAGTGAGAGAT+GGG | + | chr3.2:78065884-78065903 | MS.gene057248:intron | 50.0% | |
| TGGAAGATGGGCATAAAGGG+TGG | + | chr3.2:78065811-78065830 | MS.gene057248:intron | 50.0% | |
| ! | GTCGGTTCAGGTCATCTTGT+GGG | + | chr3.2:78065347-78065366 | MS.gene057248:intron | 50.0% |
| !! | GCACCACCCCCAATTTTAAC+GGG | + | chr3.2:78063812-78063831 | MS.gene057248:CDS | 50.0% |
| AGTGACACCCCTCACCTTAC+AGG | + | chr3.2:78065622-78065641 | MS.gene057248:intron | 55.0% | |
| CATACCAACGCGCAACCAAC+GGG | - | chr3.2:78063968-78063987 | None:intergenic | 55.0% | |
| CTGAGCAGAGGAGTGAGAGA+TGG | + | chr3.2:78065883-78065902 | MS.gene057248:intron | 55.0% | |
| GGCTCTTCCAGACGATATGC+AGG | + | chr3.2:78066371-78066390 | MS.gene057248:CDS | 55.0% | |
| GGTGGCAGATCAGAGCCTTA+TGG | - | chr3.2:78065220-78065239 | None:intergenic | 55.0% | |
| TCCGGCGACGAAACTTCAGA+GGG | - | chr3.2:78065241-78065260 | None:intergenic | 55.0% | |
| ! | TTTGGGGGGGATTTTCCCCT+AGG | + | chr3.2:78066559-78066578 | MS.gene057248:intron | 55.0% |
| !! | ACCCTCTGAAGTTTCGTCGC+CGG | + | chr3.2:78065237-78065256 | MS.gene057248:intron | 55.0% |
| !! | CGTCGGTTCAGGTCATCTTG+TGG | + | chr3.2:78065346-78065365 | MS.gene057248:intron | 55.0% |
| !! | GATCAAGAAGCCGTCGGTTC+AGG | + | chr3.2:78065335-78065354 | MS.gene057248:intron | 55.0% |
| !! | GATTGTTGGGCACTGAGCAG+AGG | + | chr3.2:78065871-78065890 | MS.gene057248:intron | 55.0% |
| CTCCGGCGACGAAACTTCAG+AGG | - | chr3.2:78065242-78065261 | None:intergenic | 60.0% | |
| GGCGACGAAACTTCAGAGGG+TGG | - | chr3.2:78065238-78065257 | None:intergenic | 60.0% | |
| GTGGCGGCTTCGTCACCATA+AGG | + | chr3.2:78065202-78065221 | MS.gene057248:intron | 60.0% | |
| CGGGCAGCCCAGCTTCGAGT+TGG | - | chr3.2:78063949-78063968 | None:intergenic | 70.0% | |
| CTCGAAGCTGGGCTGCCCGT+TGG | + | chr3.2:78063950-78063969 | MS.gene057248:CDS | 70.0% | |
| ! | GCTGCCCGTTGGTTGCGCGT+TGG | + | chr3.2:78063961-78063980 | MS.gene057248:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78063291 | 78067067 | 78063291 | ID=MS.gene057248 |
| chr3.2 | mRNA | 78063291 | 78067067 | 78063291 | ID=MS.gene057248.t1;Parent=MS.gene057248 |
| chr3.2 | exon | 78063291 | 78063380 | 78063291 | ID=MS.gene057248.t1.exon1;Parent=MS.gene057248.t1 |
| chr3.2 | CDS | 78063291 | 78063380 | 78063291 | ID=cds.MS.gene057248.t1;Parent=MS.gene057248.t1 |
| chr3.2 | exon | 78063742 | 78063833 | 78063742 | ID=MS.gene057248.t1.exon2;Parent=MS.gene057248.t1 |
| chr3.2 | CDS | 78063742 | 78063833 | 78063742 | ID=cds.MS.gene057248.t1;Parent=MS.gene057248.t1 |
| chr3.2 | exon | 78063927 | 78063982 | 78063927 | ID=MS.gene057248.t1.exon3;Parent=MS.gene057248.t1 |
| chr3.2 | CDS | 78063927 | 78063982 | 78063927 | ID=cds.MS.gene057248.t1;Parent=MS.gene057248.t1 |
| chr3.2 | exon | 78066331 | 78066392 | 78066331 | ID=MS.gene057248.t1.exon4;Parent=MS.gene057248.t1 |
| chr3.2 | CDS | 78066331 | 78066392 | 78066331 | ID=cds.MS.gene057248.t1;Parent=MS.gene057248.t1 |
| chr3.2 | exon | 78067017 | 78067067 | 78067017 | ID=MS.gene057248.t1.exon5;Parent=MS.gene057248.t1 |
| chr3.2 | CDS | 78067017 | 78067067 | 78067017 | ID=cds.MS.gene057248.t1;Parent=MS.gene057248.t1 |
| Gene Sequence |
| Protein sequence |
