AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013906.t1 MTR_7g088090 98.438 320 5 0 1 320 1 320 0.0 650
MS.gene013906.t1 MTR_6g026800 61.446 332 105 8 1 320 1 321 1.69e-117 342
MS.gene013906.t1 MTR_8g043960 50.000 310 132 8 15 320 23 313 4.72e-86 261
MS.gene013906.t1 MTR_3g010660 47.962 319 132 8 16 318 20 320 3.56e-85 259
MS.gene013906.t1 MTR_4g085910 36.637 333 149 8 16 292 18 344 3.85e-45 157
MS.gene013906.t1 MTR_5g088230 37.419 310 123 9 16 318 17 262 4.40e-37 134
MS.gene013906.t1 MTR_2g086390 32.886 298 134 10 19 298 11 260 1.60e-30 117
MS.gene013906.t1 MTR_2g086390 32.192 292 133 8 19 293 11 254 7.49e-30 115
MS.gene013906.t1 MTR_2g086340 35.495 293 143 11 17 293 23 285 1.52e-24 101
MS.gene013906.t1 MTR_3g101780 40.000 150 75 3 2 146 14 153 1.92e-23 100
MS.gene013906.t1 MTR_3g101780 67.213 61 19 1 235 295 339 398 7.88e-17 80.9
MS.gene013906.t1 MTR_5g060990 29.870 308 161 10 16 283 12 304 1.50e-22 95.9
MS.gene013906.t1 MTR_5g088230 45.600 125 56 3 16 134 22 140 1.03e-21 92.8
MS.gene013906.t1 MTR_5g088230 57.647 85 35 1 234 318 184 267 3.58e-19 85.9
MS.gene013906.t1 MTR_7g104480 30.319 188 97 5 22 191 45 216 1.98e-15 77.0
MS.gene013906.t1 MTR_7g015990 76.596 47 8 1 249 292 120 166 5.95e-13 67.0
MS.gene013906.t1 MTR_8g075130 62.963 54 17 1 242 292 98 151 2.11e-12 65.1
MS.gene013906.t1 MTR_5g022780 31.004 229 116 9 98 292 1 221 5.73e-12 65.1
MS.gene013906.t1 MTR_4g094390 60.714 56 22 0 236 291 117 172 8.80e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013906.t1 AT3G56850 55.015 329 107 10 1 320 1 297 2.83e-101 300
MS.gene013906.t1 AT2G41070 48.466 326 98 11 1 320 10 271 8.87e-83 251
MS.gene013906.t1 AT2G41070 48.466 326 98 11 1 320 1 262 9.49e-83 251
MS.gene013906.t1 AT2G41070 48.466 326 98 11 1 320 1 262 9.49e-83 251
MS.gene013906.t1 AT2G41070 48.466 326 98 11 1 320 1 262 9.49e-83 251
MS.gene013906.t1 AT2G41070 46.823 299 89 11 1 293 1 235 9.26e-68 212
MS.gene013906.t1 AT1G49720 37.766 188 90 5 16 190 23 196 3.33e-26 107
MS.gene013906.t1 AT1G49720 37.766 188 90 5 16 190 23 196 4.77e-26 107
MS.gene013906.t1 AT1G49720 37.766 188 90 5 16 190 23 196 4.77e-26 107
MS.gene013906.t1 AT3G44460 34.589 292 147 8 16 295 35 294 5.55e-26 105
MS.gene013906.t1 AT3G19290 43.571 140 61 3 16 137 34 173 4.72e-24 101
MS.gene013906.t1 AT3G19290 65.306 49 17 0 244 292 347 395 1.80e-13 70.9
MS.gene013906.t1 AT3G19290 43.571 140 61 3 16 137 34 173 6.84e-24 101
MS.gene013906.t1 AT3G19290 43.571 140 61 3 16 137 34 173 8.82e-24 101
MS.gene013906.t1 AT3G19290 65.306 49 17 0 244 292 347 395 2.62e-13 70.5
MS.gene013906.t1 AT3G19290 43.571 140 61 3 16 137 34 173 9.10e-24 101
MS.gene013906.t1 AT3G19290 65.306 49 17 0 244 292 347 395 2.64e-13 70.5
MS.gene013906.t1 AT3G19290 43.571 140 61 3 16 137 34 173 9.10e-24 101
MS.gene013906.t1 AT3G19290 65.306 49 17 0 244 292 347 395 2.64e-13 70.5
MS.gene013906.t1 AT1G45249 53.153 111 37 5 217 319 327 430 5.68e-20 90.1
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 36 203 5.49e-19 87.4
MS.gene013906.t1 AT1G45249 53.153 111 37 5 217 319 327 430 5.68e-20 90.1
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 36 203 5.49e-19 87.4
MS.gene013906.t1 AT1G45249 53.153 111 37 5 217 319 312 415 5.76e-20 90.1
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 6.18e-19 87.0
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.85e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.85e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.85e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.85e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.96e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 7.96e-19 86.7
MS.gene013906.t1 AT1G45249 37.500 176 83 6 16 172 21 188 8.81e-19 86.7
MS.gene013906.t1 AT1G45249 48.361 122 37 6 217 319 312 426 4.37e-17 81.6
MS.gene013906.t1 AT2G36270 70.149 67 18 2 233 298 341 406 3.42e-18 85.1
MS.gene013906.t1 AT2G36270 31.351 185 64 5 15 137 36 219 8.62e-13 68.9
MS.gene013906.t1 AT2G36270 70.149 67 18 2 233 298 341 406 3.42e-18 85.1
MS.gene013906.t1 AT2G36270 31.351 185 64 5 15 137 36 219 8.62e-13 68.9
MS.gene013906.t1 AT2G36270 70.149 67 18 2 233 298 341 406 3.72e-18 85.1
MS.gene013906.t1 AT2G36270 31.351 185 64 5 15 137 36 219 1.69e-12 68.2
MS.gene013906.t1 AT4G34000 48.113 106 44 3 197 292 312 416 1.72e-17 83.2
MS.gene013906.t1 AT4G34000 32.919 161 69 5 16 137 27 187 3.55e-17 82.0
MS.gene013906.t1 AT4G34000 48.113 106 44 3 197 292 312 416 2.22e-17 82.8
MS.gene013906.t1 AT4G34000 32.919 161 69 5 16 137 27 187 3.82e-17 82.0
MS.gene013906.t1 AT4G34000 48.113 106 44 3 197 292 312 416 2.22e-17 82.8
MS.gene013906.t1 AT4G34000 32.919 161 69 5 16 137 27 187 3.82e-17 82.0
MS.gene013906.t1 AT4G34000 48.113 106 44 3 197 292 312 416 2.22e-17 82.8
MS.gene013906.t1 AT4G34000 32.919 161 69 5 16 137 27 187 3.82e-17 82.0
MS.gene013906.t1 AT4G35900 59.155 71 28 1 250 320 216 285 3.22e-17 80.9
MS.gene013906.t1 AT2G17770 55.556 72 31 1 249 320 125 195 5.97e-15 72.8
MS.gene013906.t1 AT1G03970 31.220 205 83 7 96 297 85 234 2.37e-13 69.3
MS.gene013906.t1 AT5G44080 29.536 237 108 8 96 317 120 312 3.94e-13 69.3
MS.gene013906.t1 AT5G42910 42.991 107 51 5 218 317 264 367 6.97e-11 63.2

Find 82 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCAGCTTGGAAATTT+AGG 0.083769 7.1:+18045635 MS.gene013906:CDS
CAGCATGGTCAACTGGCTTC+TGG 0.131375 7.1:+18045764 MS.gene013906:CDS
ATGAATCCATTGACACTTTC+TGG 0.149546 7.1:+18045794 MS.gene013906:CDS
CAAGGTTCTGGGTTGGATTC+TGG 0.152919 7.1:+18045722 MS.gene013906:CDS
TCTGAAGCTGCTCAAGGTTC+TGG 0.221535 7.1:+18045710 MS.gene013906:CDS
AAAATCAGCTTGGAAATTTA+GGG 0.258433 7.1:+18045636 MS.gene013906:CDS
TTTGTCACCGTCTTCTTTAA+TGG 0.283520 7.1:+18046195 MS.gene013906:CDS
TGTGGTTCAACAGCCTGTTT+TGG 0.318849 7.1:+18046144 MS.gene013906:CDS
AGAAAACTATTGATGAGGTT+TGG 0.366361 7.1:+18045828 MS.gene013906:CDS
GTTCTGCGAAGCTGATGCTT+AGG 0.411723 7.1:-18048190 None:intergenic
GGGTCTGGTGGTGGCATACT+TGG 0.413639 7.1:-18048169 None:intergenic
ATCTAGATTCATGCTTCCTA+AGG 0.414294 7.1:-18045663 None:intergenic
CACAAACTCAAGGTAGGAAA+AGG 0.414409 7.1:+18046233 MS.gene013906:CDS
TCGGTCGCGGGCTAGAAAAC+AGG 0.419550 7.1:+18046333 MS.gene013906:CDS
CTGAAGCTGCTCAAGGTTCT+GGG 0.427919 7.1:+18045711 MS.gene013906:CDS
AGAACAAAAGACTGGAACTT+TGG 0.437900 7.1:+18045571 MS.gene013906:CDS
GTGTATCCTGCATCCAAAAC+AGG 0.438961 7.1:-18046157 None:intergenic
TTACATGCAGCATGGTCAAC+TGG 0.446389 7.1:+18045757 MS.gene013906:CDS
ATGAGTTGCTGAAGAGTTTG+TGG 0.448987 7.1:+18045684 MS.gene013906:CDS
GGGAATCTGCAGCTCGGTCG+CGG 0.454529 7.1:+18046320 MS.gene013906:CDS
AGCATGGTCAACTGGCTTCT+GGG 0.456125 7.1:+18045765 MS.gene013906:CDS
TTTGCAATAAAGTCTTCAAA+GGG 0.467582 7.1:-18048224 None:intergenic
ATACATCCCAGCATGGTCAT+TGG 0.471305 7.1:+18046017 MS.gene013906:CDS
AGCTGCTCAAGGTTCTGGGT+TGG 0.476833 7.1:+18045715 MS.gene013906:CDS
TTCTGCGAAGCTGATGCTTA+GGG 0.478401 7.1:-18048189 None:intergenic
CTGTGGAGAGGAGGCAGAAG+AGG 0.493448 7.1:+18046284 MS.gene013906:CDS
GAGGATTTCTTGATGAAAGC+TGG 0.496759 7.1:+18045920 MS.gene013906:CDS
TGATGCTGATGTTGTTGTTG+TGG 0.499071 7.1:-18046070 None:intergenic
AGTGAGGATAATGCTATGTC+AGG 0.499581 7.1:+18045965 MS.gene013906:CDS
GGAAATTTAGGGAAACCCTT+AGG 0.509333 7.1:+18045647 MS.gene013906:CDS
AGATCACCAGAAAGTGTCAA+TGG 0.510245 7.1:-18045800 None:intergenic
TGTTGTGGTTGCTGCACTGA+AGG 0.512843 7.1:-18046055 None:intergenic
GATGAGGTTCAAAATCAGCT+TGG 0.519734 7.1:+18045626 MS.gene013906:CDS
CATCAGAATAATATGATGAC+TGG 0.520032 7.1:+18046097 MS.gene013906:CDS
ACAGGCTTACACGCAAGAGC+TGG 0.521050 7.1:+18046449 MS.gene013906:intron
GGAATCTGCAGCTCGGTCGC+GGG 0.521215 7.1:+18046321 MS.gene013906:CDS
AAGGGTTGCCTCTGGTGTTG+TGG 0.526242 7.1:+18046252 MS.gene013906:CDS
GGTAGGAAAAGGGTTGCCTC+TGG 0.527641 7.1:+18046244 MS.gene013906:CDS
CGAAGCTGATGCTTAGGGTC+TGG 0.529237 7.1:-18048184 None:intergenic
GTTGTGGTTGCTGCACTGAA+GGG 0.529499 7.1:-18046054 None:intergenic
ACAGAAGAAGAGTGCTACTC+AGG 0.538779 7.1:+18045862 MS.gene013906:CDS
TGGACATCTGAAGCTGCTCA+AGG 0.541485 7.1:+18045704 MS.gene013906:CDS
ACAAACTCAAGGTAGGAAAA+GGG 0.545104 7.1:+18046234 MS.gene013906:CDS
ATGCTGCATGTAACCATCAC+TGG 0.546349 7.1:-18045747 None:intergenic
AGAAGAGTGCTACTCAGGAT+AGG 0.549626 7.1:+18045867 MS.gene013906:CDS
AAAAGACTGGAACTTTGGCT+AGG 0.557530 7.1:+18045576 MS.gene013906:CDS
CAGATACACAAACTCAAGGT+AGG 0.558085 7.1:+18046227 MS.gene013906:CDS
GCAATCCAAGAACAAAAGAC+TGG 0.559028 7.1:+18045563 MS.gene013906:CDS
TGATGCTTAGGGTCTGGTGG+TGG 0.567579 7.1:-18048178 None:intergenic
ATTTAGAAGAAGAGAATGAA+AGG 0.569359 7.1:+18046487 MS.gene013906:CDS
GTACAATCTCACATTTGATG+AGG 0.569368 7.1:+18045610 MS.gene013906:CDS
TCTAGATTCATGCTTCCTAA+GGG 0.569459 7.1:-18045662 None:intergenic
GTTGCTGCACTGAAGGGACT+TGG 0.573952 7.1:-18046048 None:intergenic
TAGTAAGAAAACTATTGATG+AGG 0.581872 7.1:+18045823 MS.gene013906:CDS
ACTGCATCCAATGACCATGC+TGG 0.582214 7.1:-18046024 None:intergenic
TTGGATTCTGGAACCAGTGA+TGG 0.584696 7.1:+18045734 MS.gene013906:CDS
AGGATAATGCTATGTCAGGA+AGG 0.586500 7.1:+18045969 MS.gene013906:CDS
CACTGAATCATTTCCTAGTG+AGG 0.587073 7.1:+18045949 MS.gene013906:CDS
AGCTGATGCTTAGGGTCTGG+TGG 0.587120 7.1:-18048181 None:intergenic
AAAGACTGGAACTTTGGCTA+GGG 0.596011 7.1:+18045577 MS.gene013906:CDS
AGGTTATATGACTGGTCATG+TGG 0.602596 7.1:+18046126 MS.gene013906:CDS
CTGCATCCAATGACCATGCT+GGG 0.608106 7.1:-18046023 None:intergenic
ACTGGAACTTTGGCTAGGGA+AGG 0.612277 7.1:+18045581 MS.gene013906:CDS
TTGAGAAAACTGTGGAGAGG+AGG 0.618222 7.1:+18046275 MS.gene013906:CDS
AAAATAGGGAATCTGCAGCT+CGG 0.624873 7.1:+18046314 MS.gene013906:CDS
TACACTTGGTGAGATGACTC+TGG 0.627462 7.1:+18045898 MS.gene013906:CDS
TTGAAAATGGGATCTCATGG+AGG 0.632717 7.1:+18045539 None:intergenic
GATAGGAGAACAGCTACACT+TGG 0.637974 7.1:+18045884 MS.gene013906:CDS
TCATCAGATACACAAACTCA+AGG 0.638560 7.1:+18046223 MS.gene013906:CDS
GAAGTAGCCATTAAAGAAGA+CGG 0.641922 7.1:-18046202 None:intergenic
TTTCTTGATGAAAGCTGGTG+TGG 0.647086 7.1:+18045925 MS.gene013906:CDS
CTCACTAGGAAATGATTCAG+TGG 0.653229 7.1:-18045948 None:intergenic
TTTCTCAACCACAACACCAG+AGG 0.653421 7.1:-18046260 None:intergenic
TGCAGGATACACTGAAGCAA+TGG 0.653801 7.1:+18046168 MS.gene013906:CDS
GGATAATGCTATGTCAGGAA+GGG 0.659996 7.1:+18045970 MS.gene013906:CDS
GACATAGCATTATCCTCACT+AGG 0.666638 7.1:-18045962 None:intergenic
AGTGATGGTTACATGCAGCA+TGG 0.680149 7.1:+18045749 MS.gene013906:CDS
CAACAAAATACATCCCAGCA+TGG 0.680747 7.1:+18046010 MS.gene013906:CDS
TGGTTGAGAAAACTGTGGAG+AGG 0.682616 7.1:+18046272 MS.gene013906:CDS
TTGCAATAAAGTCTTCAAAG+GGG 0.695239 7.1:-18048223 None:intergenic
ACTTGGTGAGATGACTCTGG+AGG 0.705699 7.1:+18045901 MS.gene013906:CDS
TGTTGTGGTTGAGAAAACTG+TGG 0.749971 7.1:+18046267 MS.gene013906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATATAATAAAAATGATG+TGG + chr7.1:18047724-18047743 MS.gene013906:intron 15.0%
!!! AGTTTTCATTATTTCAAAAT+TGG + chr7.1:18047312-18047331 MS.gene013906:intron 15.0%
!!! ATTTTGTTAAATCATATAGA+AGG + chr7.1:18046992-18047011 MS.gene013906:intron 15.0%
!!! GTTTTCATTATTTCAAAATT+GGG + chr7.1:18047313-18047332 MS.gene013906:intron 15.0%
!! AAAACTTCAAGAAAGAATAA+AGG - chr7.1:18046761-18046780 None:intergenic 20.0%
!! ATTCCTAATTGAATTACTTA+AGG - chr7.1:18048034-18048053 None:intergenic 20.0%
!! CAAAAATATGATTCAATAAC+TGG + chr7.1:18046708-18046727 MS.gene013906:intron 20.0%
!! TATGATTTAACAAAATTGAC+AGG - chr7.1:18046988-18047007 None:intergenic 20.0%
!!! TAAATCATATAGAAGGTTTT+TGG + chr7.1:18046999-18047018 MS.gene013906:intron 20.0%
!!! TATATAGATGTTTTCAGAAA+TGG - chr7.1:18047712-18047731 None:intergenic 20.0%
! AAAATCAGCTTGGAAATTTA+GGG + chr7.1:18045636-18045655 MS.gene013906:CDS 25.0%
! AAACAGATCATAAAGCAAAA+AGG - chr7.1:18047787-18047806 None:intergenic 25.0%
! AAATCAGAGATAAATGATCA+AGG - chr7.1:18047926-18047945 None:intergenic 25.0%
! AACTTAACAATGTATGAAGT+AGG - chr7.1:18047296-18047315 None:intergenic 25.0%
! AAGAAATAGAATGTTTACAC+TGG + chr7.1:18046676-18046695 MS.gene013906:intron 25.0%
! AATAAAGTATAGATGCAAAC+TGG - chr7.1:18046547-18046566 None:intergenic 25.0%
! AATAATAACGCTAACTGAAA+CGG - chr7.1:18046738-18046757 None:intergenic 25.0%
! AATGGTATAATAACTAACCA+GGG - chr7.1:18047198-18047217 None:intergenic 25.0%
! AGAAGAGGATGATTAAAAAT+AGG + chr7.1:18046299-18046318 MS.gene013906:CDS 25.0%
! ATGTCTCAATAAAAGCTAAA+TGG - chr7.1:18047102-18047121 None:intergenic 25.0%
! ATTTAGAAGAAGAGAATGAA+AGG + chr7.1:18046487-18046506 MS.gene013906:CDS 25.0%
! CAAAATAGAGATTCATGTTA+AGG - chr7.1:18046787-18046806 None:intergenic 25.0%
! CAACCTTAAGTAATTCAATT+AGG + chr7.1:18048028-18048047 MS.gene013906:intron 25.0%
! CAGGAAAGGATAAATATTAA+TGG - chr7.1:18047518-18047537 None:intergenic 25.0%
! GAAGAGGATGATTAAAAATA+GGG + chr7.1:18046300-18046319 MS.gene013906:CDS 25.0%
! TAGTAAGAAAACTATTGATG+AGG + chr7.1:18045823-18045842 MS.gene013906:CDS 25.0%
!!! GTAGTCATTGTTTTTGTTAA+TGG + chr7.1:18046386-18046405 MS.gene013906:intron 25.0%
!!! TAGAAAGTACTCTTGTTTAA+TGG + chr7.1:18047410-18047429 MS.gene013906:intron 25.0%
!!! TTTGTTTTGTTGAGAATTTG+TGG + chr7.1:18047635-18047654 MS.gene013906:intron 25.0%
AACTAACAAAAGCTTGTGAT+AGG - chr7.1:18047478-18047497 None:intergenic 30.0%
AGAAAACTATTGATGAGGTT+TGG + chr7.1:18045828-18045847 MS.gene013906:CDS 30.0%
AGGAAATGTTCAAAAATCTG+CGG - chr7.1:18047382-18047401 None:intergenic 30.0%
ATGACATATATTTGTGTGTG+TGG + chr7.1:18046417-18046436 MS.gene013906:intron 30.0%
ATGGTATAATAACTAACCAG+GGG - chr7.1:18047197-18047216 None:intergenic 30.0%
CAAAATCAGCTTGGAAATTT+AGG + chr7.1:18045635-18045654 MS.gene013906:CDS 30.0%
CAATGGTATAATAACTAACC+AGG - chr7.1:18047199-18047218 None:intergenic 30.0%
CATCAGAATAATATGATGAC+TGG + chr7.1:18046097-18046116 MS.gene013906:CDS 30.0%
CGAAAGTTTATGAGATAATC+TGG + chr7.1:18047047-18047066 MS.gene013906:intron 30.0%
CTATACTTTATTCCTTTGTC+TGG + chr7.1:18046555-18046574 MS.gene013906:intron 30.0%
GGTTGAAATGTTAGTTAATG+AGG + chr7.1:18046629-18046648 MS.gene013906:intron 30.0%
TCCAAAACAATATTCAGGAA+AGG - chr7.1:18047532-18047551 None:intergenic 30.0%
! AAATGATGTGGTGATTTTGA+TGG + chr7.1:18047736-18047755 MS.gene013906:intron 30.0%
! ACAAGCTTTTGTTAGTTGAT+TGG + chr7.1:18047481-18047500 MS.gene013906:intron 30.0%
! CTGATCTCTAAAAAGTGATT+TGG + chr7.1:18048069-18048088 MS.gene013906:intron 30.0%
! TCCTTTCCTGAATATTGTTT+TGG + chr7.1:18047528-18047547 MS.gene013906:intron 30.0%
! TGTTTTCAGAAATGGAATGA+AGG - chr7.1:18047704-18047723 None:intergenic 30.0%
! TTTGCTTATTAAGCTTTGTG+TGG + chr7.1:18046803-18046822 MS.gene013906:intron 30.0%
!! CAAGAGTACTTTCTATCAAA+TGG - chr7.1:18047405-18047424 None:intergenic 30.0%
!! TAAAGTAACCTTTGAAGTCA+TGG - chr7.1:18047581-18047600 None:intergenic 30.0%
!!! TGACTTTGTTTTTCTAAAGC+TGG + chr7.1:18047440-18047459 MS.gene013906:intron 30.0%
!!! TTCCTGAATATTGTTTTGGA+GGG + chr7.1:18047532-18047551 MS.gene013906:intron 30.0%
!!! TTTCCTGAATATTGTTTTGG+AGG + chr7.1:18047531-18047550 MS.gene013906:intron 30.0%
!!! TTTTTTCTACCATCTTGTGA+AGG + chr7.1:18046598-18046617 MS.gene013906:intron 30.0%
AACAATGTATGAAGTAGGAC+AGG - chr7.1:18047291-18047310 None:intergenic 35.0%
ACAAACTCAAGGTAGGAAAA+GGG + chr7.1:18046234-18046253 MS.gene013906:CDS 35.0%
AGAACAAAAGACTGGAACTT+TGG + chr7.1:18045571-18045590 MS.gene013906:CDS 35.0%
AGATCAAATGAAAGCTATGC+AGG - chr7.1:18047171-18047190 None:intergenic 35.0%
ATCTAGATTCATGCTTCCTA+AGG - chr7.1:18045666-18045685 None:intergenic 35.0%
ATGAATCCATTGACACTTTC+TGG + chr7.1:18045794-18045813 MS.gene013906:CDS 35.0%
CCAAACAAGCAACATCAAAA+TGG - chr7.1:18046901-18046920 None:intergenic 35.0%
GAAGTAGCCATTAAAGAAGA+CGG - chr7.1:18046205-18046224 None:intergenic 35.0%
GAGTACTTTCTATCAAATGG+AGG - chr7.1:18047402-18047421 None:intergenic 35.0%
GTACAATCTCACATTTGATG+AGG + chr7.1:18045610-18045629 MS.gene013906:CDS 35.0%
TACCCTCCAAAACAATATTC+AGG - chr7.1:18047537-18047556 None:intergenic 35.0%
TAGTGGCAACACAAGAAATT+AGG - chr7.1:18047353-18047372 None:intergenic 35.0%
TAGTTAATGAGGACTTCAAC+TGG + chr7.1:18046640-18046659 MS.gene013906:intron 35.0%
TCATCAGATACACAAACTCA+AGG + chr7.1:18046223-18046242 MS.gene013906:CDS 35.0%
TCTAATGGTATGGGTTTCAA+TGG - chr7.1:18047216-18047235 None:intergenic 35.0%
TCTAGATTCATGCTTCCTAA+GGG - chr7.1:18045665-18045684 None:intergenic 35.0%
TGGTATAATAACTAACCAGG+GGG - chr7.1:18047196-18047215 None:intergenic 35.0%
TTCGTGTAAAGATCCATTTC+CGG - chr7.1:18047031-18047050 None:intergenic 35.0%
TTTGTCACCGTCTTCTTTAA+TGG + chr7.1:18046195-18046214 MS.gene013906:CDS 35.0%
! AAGTTCCAGTCTTTTGTTCT+TGG - chr7.1:18045571-18045590 None:intergenic 35.0%
! TCTATTTCTTAAGCAAGCAC+CGG - chr7.1:18046666-18046685 None:intergenic 35.0%
!! CCATTTTGATGTTGCTTGTT+TGG + chr7.1:18046898-18046917 MS.gene013906:intron 35.0%
!! TTTTGATGGTTAAACCTAGC+TGG + chr7.1:18047750-18047769 MS.gene013906:intron 35.0%
!!! AATATGATGACTGGTTTTGC+AGG + chr7.1:18046106-18046125 MS.gene013906:CDS 35.0%
!!! AGAAGGTTTTTGGCTTTAAC+CGG + chr7.1:18047009-18047028 MS.gene013906:intron 35.0%
!!! TTTTTGGCTTTAACCGGAAA+TGG + chr7.1:18047015-18047034 MS.gene013906:intron 35.0%
AAAAGACTGGAACTTTGGCT+AGG + chr7.1:18045576-18045595 MS.gene013906:CDS 40.0%
AAAATAGGGAATCTGCAGCT+CGG + chr7.1:18046314-18046333 MS.gene013906:CDS 40.0%
AAAGACTGGAACTTTGGCTA+GGG + chr7.1:18045577-18045596 MS.gene013906:CDS 40.0%
AAAGCAGCTCAGCAATCTAA+TGG - chr7.1:18047231-18047250 None:intergenic 40.0%
ACAAATGTCACACCAGACAA+AGG - chr7.1:18046570-18046589 None:intergenic 40.0%
AGCTCAGCAATCTAATGGTA+TGG - chr7.1:18047226-18047245 None:intergenic 40.0%
AGGATAATGCTATGTCAGGA+AGG + chr7.1:18045969-18045988 MS.gene013906:CDS 40.0%
AGTGAGGATAATGCTATGTC+AGG + chr7.1:18045965-18045984 MS.gene013906:CDS 40.0%
ATGAGTTGCTGAAGAGTTTG+TGG + chr7.1:18045684-18045703 MS.gene013906:CDS 40.0%
CAACAAAATACATCCCAGCA+TGG + chr7.1:18046010-18046029 MS.gene013906:CDS 40.0%
CACAAACTCAAGGTAGGAAA+AGG + chr7.1:18046233-18046252 MS.gene013906:CDS 40.0%
CACTGAATCATTTCCTAGTG+AGG + chr7.1:18045949-18045968 MS.gene013906:CDS 40.0%
CAGATACACAAACTCAAGGT+AGG + chr7.1:18046227-18046246 MS.gene013906:CDS 40.0%
CTCACTAGGAAATGATTCAG+TGG - chr7.1:18045951-18045970 None:intergenic 40.0%
CTCTAGTGAATCTTTCATGC+AGG + chr7.1:18048129-18048148 MS.gene013906:intron 40.0%
GACATAGCATTATCCTCACT+AGG - chr7.1:18045965-18045984 None:intergenic 40.0%
GAGGATTTCTTGATGAAAGC+TGG + chr7.1:18045920-18045939 MS.gene013906:CDS 40.0%
GATGAGGTTCAAAATCAGCT+TGG + chr7.1:18045626-18045645 MS.gene013906:CDS 40.0%
GCAATCCAAGAACAAAAGAC+TGG + chr7.1:18045563-18045582 MS.gene013906:CDS 40.0%
GCTCAGCAATCTAATGGTAT+GGG - chr7.1:18047225-18047244 None:intergenic 40.0%
GGAAATTTAGGGAAACCCTT+AGG + chr7.1:18045647-18045666 MS.gene013906:CDS 40.0%
GGATAATGCTATGTCAGGAA+GGG + chr7.1:18045970-18045989 MS.gene013906:CDS 40.0%
GTTGCAGACATAGATAGTTC+TGG - chr7.1:18048012-18048031 None:intergenic 40.0%
TGTTGTGGTTGAGAAAACTG+TGG + chr7.1:18046267-18046286 MS.gene013906:CDS 40.0%
TTGTCTGGTGTGACATTTGT+TGG + chr7.1:18046570-18046589 MS.gene013906:intron 40.0%
TTGTGGTCTAGATGACAAAG+AGG + chr7.1:18047652-18047671 MS.gene013906:intron 40.0%
TTTCATTTGATCTTTCCCCC+TGG + chr7.1:18047178-18047197 MS.gene013906:intron 40.0%
TTTCTTGATGAAAGCTGGTG+TGG + chr7.1:18045925-18045944 MS.gene013906:CDS 40.0%
! AAAATCTGCGGCTCTTTTAG+TGG - chr7.1:18047370-18047389 None:intergenic 40.0%
! AGGTTATATGACTGGTCATG+TGG + chr7.1:18046126-18046145 MS.gene013906:CDS 40.0%
! GGTTTTGCAGGTTATATGAC+TGG + chr7.1:18046118-18046137 MS.gene013906:CDS 40.0%
! TCTTTCCAAACTGACTTCCA+TGG - chr7.1:18046942-18046961 None:intergenic 40.0%
! TGATGCTGATGTTGTTGTTG+TGG - chr7.1:18046073-18046092 None:intergenic 40.0%
! TTTTGCAACCATGCTAACCA+TGG + chr7.1:18046922-18046941 MS.gene013906:intron 40.0%
!! AGATCACCAGAAAGTGTCAA+TGG - chr7.1:18045803-18045822 None:intergenic 40.0%
!! AGTAACCTTTGAAGTCATGG+AGG - chr7.1:18047578-18047597 None:intergenic 40.0%
AGTGATGGTTACATGCAGCA+TGG + chr7.1:18045749-18045768 MS.gene013906:CDS 45.0%
ATACATCCCAGCATGGTCAT+TGG + chr7.1:18046017-18046036 MS.gene013906:CDS 45.0%
ATGCTGCATGTAACCATCAC+TGG - chr7.1:18045750-18045769 None:intergenic 45.0%
CACTCATTGCCTTCACAAGA+TGG - chr7.1:18046610-18046629 None:intergenic 45.0%
CAGTAGTGTGCAGTTTGTCT+TGG + chr7.1:18047809-18047828 MS.gene013906:intron 45.0%
CATCTTGTGAAGGCAATGAG+TGG + chr7.1:18046608-18046627 MS.gene013906:intron 45.0%
GATAGGAGAACAGCTACACT+TGG + chr7.1:18045884-18045903 MS.gene013906:CDS 45.0%
GCTAACCATGGAAGTCAGTT+TGG + chr7.1:18046934-18046953 MS.gene013906:intron 45.0%
GGTTAAACCTAGCTGGACTA+TGG + chr7.1:18047757-18047776 MS.gene013906:intron 45.0%
GTAGGACAGGATTGAACAGA+AGG - chr7.1:18047278-18047297 None:intergenic 45.0%
GTGTATCCTGCATCCAAAAC+AGG - chr7.1:18046160-18046179 None:intergenic 45.0%
TAATGAGGACTTCAACTGGC+CGG + chr7.1:18046644-18046663 MS.gene013906:intron 45.0%
TCTGTCCTCCATGACTTCAA+AGG + chr7.1:18047570-18047589 MS.gene013906:intron 45.0%
TGCAGGATACACTGAAGCAA+TGG + chr7.1:18046168-18046187 MS.gene013906:CDS 45.0%
TGGTTGAGAAAACTGTGGAG+AGG + chr7.1:18046272-18046291 MS.gene013906:CDS 45.0%
TTACATGCAGCATGGTCAAC+TGG + chr7.1:18045757-18045776 MS.gene013906:CDS 45.0%
TTCTGCGAAGCTGATGCTTA+GGG - chr7.1:18048192-18048211 None:intergenic 45.0%
TTGAGAAAACTGTGGAGAGG+AGG + chr7.1:18046275-18046294 MS.gene013906:CDS 45.0%
TTTCTCAACCACAACACCAG+AGG - chr7.1:18046263-18046282 None:intergenic 45.0%
! ACTGACTTCCATGGTTAGCA+TGG - chr7.1:18046933-18046952 None:intergenic 45.0%
! TACACTTGGTGAGATGACTC+TGG + chr7.1:18045898-18045917 MS.gene013906:CDS 45.0%
! TGTGGTTCAACAGCCTGTTT+TGG + chr7.1:18046144-18046163 MS.gene013906:CDS 45.0%
!! ACAGAAGAAGAGTGCTACTC+AGG + chr7.1:18045862-18045881 MS.gene013906:CDS 45.0%
!! AGAAGAGTGCTACTCAGGAT+AGG + chr7.1:18045867-18045886 MS.gene013906:CDS 45.0%
!! TTGGATTCTGGAACCAGTGA+TGG + chr7.1:18045734-18045753 MS.gene013906:CDS 45.0%
ACTGCATCCAATGACCATGC+TGG - chr7.1:18046027-18046046 None:intergenic 50.0%
ACTGGAACTTTGGCTAGGGA+AGG + chr7.1:18045581-18045600 MS.gene013906:CDS 50.0%
AGGTAGTCCATAGTCCAGCT+AGG - chr7.1:18047767-18047786 None:intergenic 50.0%
CTGAAGCTGCTCAAGGTTCT+GGG + chr7.1:18045711-18045730 MS.gene013906:CDS 50.0%
CTGCATCCAATGACCATGCT+GGG - chr7.1:18046026-18046045 None:intergenic 50.0%
GTTCTGCGAAGCTGATGCTT+AGG - chr7.1:18048193-18048212 None:intergenic 50.0%
GTTGTGGTTGCTGCACTGAA+GGG - chr7.1:18046057-18046076 None:intergenic 50.0%
TGTTGTGGTTGCTGCACTGA+AGG - chr7.1:18046058-18046077 None:intergenic 50.0%
! ACTTGGTGAGATGACTCTGG+AGG + chr7.1:18045901-18045920 MS.gene013906:CDS 50.0%
! AGCATGGTCAACTGGCTTCT+GGG + chr7.1:18045765-18045784 MS.gene013906:CDS 50.0%
! TCTGAAGCTGCTCAAGGTTC+TGG + chr7.1:18045710-18045729 MS.gene013906:CDS 50.0%
! TGGACATCTGAAGCTGCTCA+AGG + chr7.1:18045704-18045723 MS.gene013906:CDS 50.0%
! TGTGTGTGGTGTCAACGAAC+AGG + chr7.1:18046431-18046450 MS.gene013906:intron 50.0%
!! CAACAGCCTGTTTTGGATGC+AGG + chr7.1:18046151-18046170 MS.gene013906:CDS 50.0%
!! CAAGGTTCTGGGTTGGATTC+TGG + chr7.1:18045722-18045741 MS.gene013906:CDS 50.0%
ACAGGCTTACACGCAAGAGC+TGG + chr7.1:18046449-18046468 MS.gene013906:intron 55.0%
AGCTGATGCTTAGGGTCTGG+TGG - chr7.1:18048184-18048203 None:intergenic 55.0%
CGAAGCTGATGCTTAGGGTC+TGG - chr7.1:18048187-18048206 None:intergenic 55.0%
GGTAGGAAAAGGGTTGCCTC+TGG + chr7.1:18046244-18046263 MS.gene013906:CDS 55.0%
GTTGCTGCACTGAAGGGACT+TGG - chr7.1:18046051-18046070 None:intergenic 55.0%
TGATGCTTAGGGTCTGGTGG+TGG - chr7.1:18048181-18048200 None:intergenic 55.0%
! AAGGGTTGCCTCTGGTGTTG+TGG + chr7.1:18046252-18046271 MS.gene013906:CDS 55.0%
! CAGCATGGTCAACTGGCTTC+TGG + chr7.1:18045764-18045783 MS.gene013906:CDS 55.0%
!! AGCTGCTCAAGGTTCTGGGT+TGG + chr7.1:18045715-18045734 MS.gene013906:CDS 55.0%
CTGTGGAGAGGAGGCAGAAG+AGG + chr7.1:18046284-18046303 MS.gene013906:CDS 60.0%
!! GGGTCTGGTGGTGGCATACT+TGG - chr7.1:18048172-18048191 None:intergenic 60.0%
!! TCGGTCGCGGGCTAGAAAAC+AGG + chr7.1:18046333-18046352 MS.gene013906:CDS 60.0%
GGAATCTGCAGCTCGGTCGC+GGG + chr7.1:18046321-18046340 MS.gene013906:CDS 65.0%
GGGAATCTGCAGCTCGGTCG+CGG + chr7.1:18046320-18046339 MS.gene013906:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 18045545 18048231 18045545 ID=MS.gene013906
chr7.1 mRNA 18045545 18048231 18045545 ID=MS.gene013906.t1;Parent=MS.gene013906
chr7.1 exon 18045545 18046354 18045545 ID=MS.gene013906.t1.exon1;Parent=MS.gene013906.t1
chr7.1 CDS 18045545 18046354 18045545 ID=cds.MS.gene013906.t1;Parent=MS.gene013906.t1
chr7.1 exon 18046453 18046524 18046453 ID=MS.gene013906.t1.exon2;Parent=MS.gene013906.t1
chr7.1 CDS 18046453 18046524 18046453 ID=cds.MS.gene013906.t1;Parent=MS.gene013906.t1
chr7.1 exon 18048151 18048231 18048151 ID=MS.gene013906.t1.exon3;Parent=MS.gene013906.t1
chr7.1 CDS 18048151 18048231 18048151 ID=cds.MS.gene013906.t1;Parent=MS.gene013906.t1
Gene Sequence

>MS.gene013906

ATGGGATCTCATGGAGGAGCAATCCAAGAACAAAAGACTGGAACTTTGGCTAGGGAAGGATCTTTGTACAATCTCACATTTGATGAGGTTCAAAATCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTAGATGAGTTGCTGAAGAGTTTGTGGACATCTGAAGCTGCTCAAGGTTCTGGGTTGGATTCTGGAACCAGTGATGGTTACATGCAGCATGGTCAACTGGCTTCTGGGTCATCTATGAATCCATTGACACTTTCTGGTGATCTTAGTAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTGCTACTCAGGATAGGAGAACAGCTACACTTGGTGAGATGACTCTGGAGGATTTCTTGATGAAAGCTGGTGTGGCCACTGAATCATTTCCTAGTGAGGATAATGCTATGTCAGGAAGGGTTGATTCTCAACAGCAGCAACAAAATACATCCCAGCATGGTCATTGGATGCAGTACCAAGTCCCTTCAGTGCAGCAACCACAACAACAACATCAGCATCAAAATCATCAGAATAATATGATGACTGGTTTTGCAGGTTATATGACTGGTCATGTGGTTCAACAGCCTGTTTTGGATGCAGGATACACTGAAGCAATGGTGAGTTTGTCACCGTCTTCTTTAATGGCTACTTCATCAGATACACAAACTCAAGGTAGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCGCGGGCTAGAAAACAGGTTATATTTTTTTGTATGATGTTTGTCATTTGTAGTCATTGTTTTTGTTAATGGTTAGAGCAATGACATATATTTGTGTGTGTGGTGTCAACGAACAGGCTTACACGCAAGAGCTGGAGATCAAAGTGTCACATTTAGAAGAAGAGAATGAAAGGCTTAAAAGATTACATGTATGTTTCATTTTCATTGCCAGTTTGCATCTATACTTTATTCCTTTGTCTGGTGTGACATTTGTTGGTTAGTTTTTTTCTACCATCTTGTGAAGGCAATGAGTGGTTGAAATGTTAGTTAATGAGGACTTCAACTGGCCGGTGCTTGCTTAAGAAATAGAATGTTTACACTGGTTGAACTTTCAAAAATATGATTCAATAACTGGTTTACCGTTTCAGTTAGCGTTATTATTCCTTTATTCTTTCTTGAAGTTTTTCACCTTAACATGAATCTCTATTTTGCTTATTAAGCTTTGTGTGGAGTATCTACAAAAATTATTAAACAAATATTTTCAGTGTGAAACAAAATTTCATCATTTGATATTAGTAGCTGCCATTTTGATGTTGCTTGTTTGGCTTTTGCAACCATGCTAACCATGGAAGTCAGTTTGGAAAGAAGCGAATCAAAGTATTTGAGTTTCCTGTCAATTTTGTTAAATCATATAGAAGGTTTTTGGCTTTAACCGGAAATGGATCTTTACACGAAAGTTTATGAGATAATCTGGCTTAGAAATTGCAAATGCATCTATACTAACCATTTAGCTTTTATTGAGACATGTAATTATGATCATACACTACATGAACGACAGATTTTTATGTTTATCCTGCATAGCTTTCATTTGATCTTTCCCCCTGGTTAGTTATTATACCATTGAAACCCATACCATTAGATTGCTGAGCTGCTTTTAGTCTTATCAGACTCTCTGTTTTCCTTCTGTTCAATCCTGTCCTACTTCATACATTGTTAAGTTTTCATTATTTCAAAATTGGGACTTAATCTCTGTGCCTAATTTCTTGTGTTGCCACTAAAAGAGCCGCAGATTTTTGAACATTTCCTCCATTTGATAGAAAGTACTCTTGTTTAATGGTGATTTCTGACTTTGTTTTTCTAAAGCTGGAAATATAATATACCTATCACAAGCTTTTGTTAGTTGATTGGATCTTGACATGCCATTAATATTTATCCTTTCCTGAATATTGTTTTGGAGGGTATTATTATTAACACTCTGTCCTCCATGACTTCAAAGGTTACTTTAATGTTTCAAATCAAGAGTTGTGATGATGACTTTTTTTGTTTTGTTGAGAATTTGTGGTCTAGATGACAAAGAGGCAAACATGAGAATAGAGTTTGAGCTTCCTTCATTCCATTTCTGAAAACATCTATATAATAAAAATGATGTGGTGATTTTGATGGTTAAACCTAGCTGGACTATGGACTACCTTTTTGCTTTATGATCTGTTTAACAGTAGTGTGCAGTTTGTCTTGGTGACAAAATTTCAAGTCAATTCTCTAAGATTTGATGCTAATATAGAAAACATAAACTCACATTGAATAAAATAAGCTATCAGTAGTAATAACCTTGATCATTTATCTCTGATTTATGTCGACTTTTTTAATAGTACTGTTCTAGAATGATTTAAATTTGTAAGATTTAAACTGTGCGCCAGAACTATCTATGTCTGCAACCTTAAGTAATTCAATTAGGAATAACTCAGCTTTTGTGCTGATCTCTAAAAAGTGATTTGGTATGAATCTAGATGATTTATCTCTTCTCATATTAACTCTCTAGTGAATCTTTCATGCAGGAGATAGAGAGAGTATTGCCAAGTATGCCACCACCAGACCCTAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCCTTTGA
Protein sequence

>MS.gene013906.t1

MGSHGGAIQEQKTGTLAREGSLYNLTFDEVQNQLGNLGKPLGSMNLDELLKSLWTSEAAQGSGLDSGTSDGYMQHGQLASGSSMNPLTLSGDLSKKTIDEVWRDMQQKKSATQDRRTATLGEMTLEDFLMKAGVATESFPSEDNAMSGRVDSQQQQQNTSQHGHWMQYQVPSVQQPQQQHQHQNHQNNMMTGFAGYMTGHVVQQPVLDAGYTEAMVSLSPSSLMATSSDTQTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKRLHEIERVLPSMPPPDPKHQLRRTSSAPL