AlfalfaGEDB | MS.gene62322

M. sativa cultivar XinJiangDaYe / MS.gene62322

KEGG: K14432
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62322.t1	XP_003618910.1	85.8	324	41	4	1	322	1	321	4.30E-126	461.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62322.t1	Q9LES3	54.3	324	119	7	1	322	1	297	9.2e-69	261.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62322.t1	G7KP64	85.8	324	41	4	1	322	1	321	3.1e-126	461.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62322.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene62322	0.814807	1.28E-51	-1.69E-46
MS.gene049711	MS.gene62322	0.803368	3.60E-49	-1.69E-46
MS.gene049807	MS.gene62322	0.817168	3.79E-52	-1.69E-46
MS.gene049808	MS.gene62322	0.81327	2.79E-51	-1.69E-46
MS.gene049824	MS.gene62322	0.816381	5.69E-52	-1.69E-46
MS.gene049825	MS.gene62322	0.820932	5.28E-53	-1.69E-46
MS.gene050807	MS.gene62322	0.821843	3.26E-53	-1.69E-46
MS.gene051719	MS.gene62322	0.809461	1.87E-50	-1.69E-46
MS.gene051720	MS.gene62322	0.807502	4.90E-50	-1.69E-46
MS.gene052516	MS.gene62322	0.820377	7.09E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013906	MS.gene62322	PPI
MS.gene41906	MS.gene62322	PPI
MS.gene55561	MS.gene62322	PPI
MS.gene62322	MS.gene013906	PPI
MS.gene62322	MS.gene068056	PPI
MS.gene62322	MS.gene55561	PPI
MS.gene62322	MS.gene83996	PPI
MS.gene62322	MS.gene41866	PPI
MS.gene62322	MS.gene47208	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62322.t1	MTR_6g026800	93.827	324	15	4	1	322	1	321	0.0	567
MS.gene62322.t1	MTR_7g088090	62.840	331	103	9	1	322	1	320	4.19e-124	358
MS.gene62322.t1	MTR_3g010660	48.810	336	144	8	1	322	1	322	3.53e-91	275
MS.gene62322.t1	MTR_8g043960	50.489	307	135	5	16	322	24	313	7.86e-91	273
MS.gene62322.t1	MTR_4g085910	35.312	337	152	8	16	295	18	345	1.04e-44	157
MS.gene62322.t1	MTR_3g101780	47.097	155	68	5	2	156	14	154	4.18e-30	119
MS.gene62322.t1	MTR_3g101780	65.574	61	20	1	237	297	339	398	2.09e-16	79.7
MS.gene62322.t1	MTR_2g086390	33.893	298	138	12	20	302	12	265	1.58e-29	114
MS.gene62322.t1	MTR_2g086390	33.916	286	134	11	20	294	12	253	2.54e-29	114
MS.gene62322.t1	MTR_2g086340	36.986	292	140	11	17	294	23	284	4.18e-28	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62322.t1	AT3G56850	58.025	324	107	7	1	322	1	297	1.22e-109	321
MS.gene62322.t1	AT2G41070	49.536	323	101	8	1	322	10	271	1.62e-82	251
MS.gene62322.t1	AT2G41070	49.536	323	101	8	1	322	1	262	1.99e-82	250
MS.gene62322.t1	AT2G41070	49.536	323	101	8	1	322	1	262	1.99e-82	250
MS.gene62322.t1	AT2G41070	49.536	323	101	8	1	322	1	262	1.99e-82	250
MS.gene62322.t1	AT2G41070	48.475	295	90	8	1	294	1	234	1.01e-68	215
MS.gene62322.t1	AT3G44460	38.721	297	124	11	15	293	34	290	1.40e-30	118
MS.gene62322.t1	AT1G49720	51.748	143	55	5	9	144	18	153	3.83e-30	118
MS.gene62322.t1	AT1G49720	61.194	67	24	2	235	300	297	362	2.99e-13	70.5
MS.gene62322.t1	AT1G49720	49.660	147	62	4	5	144	12	153	3.90e-30	118

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Find 73 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATCTTGGTAATTTA+GGG	0.238621	6.1:+8518832	MS.gene62322:CDS
AAAGATCCTGACCTAGATAA+AGG	0.429936	6.1:-8518783	None:intergenic
AACATACAGCATAATCAACT+TGG	0.566933	6.1:+8518963	MS.gene62322:CDS
AACCTGAAAAGGCTGTTGAA+TGG	0.537317	6.1:-8519348	None:intergenic
AACTTGGTTTGAGTTCACAA+GGG	0.674938	6.1:+8518979	MS.gene62322:CDS
AAGATATGCAAGGGAAGAAG+AGG	0.548251	6.1:+8519054	MS.gene62322:CDS
ACTTGGTGAGATGACTTTGG+AGG	0.554555	6.1:+8519118	MS.gene62322:CDS
ACTTTACCTTTATCTAGGTC+AGG	0.424724	6.1:+8518777	MS.gene62322:CDS
AGAAAACTGTTGATGAGGTG+TGG	0.606026	6.1:+8519030	MS.gene62322:CDS
AGAGGGGTGTTGATAGGGAT+AGG	0.509576	6.1:+8519072	MS.gene62322:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACAGCATAATCAACT+TGG	+	chr6.1:8518963-8518982	MS.gene62322:CDS	30.0%
ACCTAAATAAAAGGGAAATC+AGG	-	chr6.1:8519526-8519545	None:intergenic	30.0%
AGGCATATCGATAAGTATTA+AGG	-	chr6.1:8520521-8520540	None:intergenic	30.0%
ATATCGCCATCTTCTTTAAT+GGG	+	chr6.1:8519398-8519417	MS.gene62322:CDS	30.0%
CAAAGACTTTACCTTTATCT+AGG	+	chr6.1:8518772-8518791	MS.gene62322:CDS	30.0%
CAGCTTATATGAAAACAGAA+TGG	-	chr6.1:8519649-8519668	None:intergenic	30.0%
GAAAAACAACAGTAGTTAGT+AGG	-	chr6.1:8521167-8521186	None:intergenic	30.0%
GTTTAGAAGAGGAAAATGAA+AGG	+	chr6.1:8520223-8520242	MS.gene62322:CDS	30.0%
GTTTGTTTATTTAGACAGAG+TGG	+	chr6.1:8520600-8520619	MS.gene62322:intron	30.0%
TAGTAAGAAAACTGTTGATG+AGG	+	chr6.1:8519025-8519044	MS.gene62322:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	8518741	8521695	8518741	ID=MS.gene62322
chr6.1	mRNA	8518741	8521695	8518741	ID=MS.gene62322.t1;Parent=MS.gene62322
chr6.1	exon	8518741	8519419	8518741	ID=MS.gene62322.t1.exon1;Parent=MS.gene62322.t1
chr6.1	CDS	8518741	8519419	8518741	ID=cds.MS.gene62322.t1;Parent=MS.gene62322.t1
chr6.1	exon	8519948	8520084	8519948	ID=MS.gene62322.t1.exon2;Parent=MS.gene62322.t1
chr6.1	CDS	8519948	8520084	8519948	ID=cds.MS.gene62322.t1;Parent=MS.gene62322.t1
chr6.1	exon	8520189	8520260	8520189	ID=MS.gene62322.t1.exon3;Parent=MS.gene62322.t1
chr6.1	CDS	8520189	8520260	8520189	ID=cds.MS.gene62322.t1;Parent=MS.gene62322.t1
chr6.1	exon	8521615	8521695	8521615	ID=MS.gene62322.t1.exon4;Parent=MS.gene62322.t1
chr6.1	CDS	8521615	8521695	8521615	ID=cds.MS.gene62322.t1;Parent=MS.gene62322.t1

Gene Sequence

>MS.gene62322

ATGGGGTCACAAGGTGGAACAGTTTCAGAGTCAAAGACTTTACCTTTATCTAGGTCAGGATCTTTGTATAATCTAACACTTGATGAAGTTCAAAACCATCTTGGTAATTTAGGGAAACCACTTGGAAGTATGAATCTTGATGAGTTGCTTAAGAGTGTGTGGAGTGTTGAAGCTGGCGAGGTTTCGGATTTCGGCGGTAGTGATGTTGCTGCTGCTGCTGGTAACATACAGCATAATCAACTTGGTTTGAGTTCACAAGGGAGTTTAACTTTGTCTGGAGATCTTAGTAAGAAAACTGTTGATGAGGTGTGGAAAGATATGCAAGGGAAGAAGAGGGGTGTTGATAGGGATAGGAAATCGCGTGAAAAACAACAGACACTTGGTGAGATGACTTTGGAGGATTTCTTGGTGAAAGCTGGAGTTGTTGGTGAATCTTTTCATAACAATAAGGATGATGGTGGTTTGTTAAGGGTTGATTCGAATGAGGATTCTCGGCATAATGTTTCGCAACATGGTCTTCATTGGATGCAATATCCGGTCCATTCTGTTCAGCAGCAACAACATCAGTATGAAAAGCATATGATGCCGGGTTTTGCGGCAGTTCATGCCATTCAACAGCCTTTTCAGGTTGCCGGGAATCAAGTTTTGGATGCAGCGATATCGCCATCTTCTTTAATGGGTACTACTGTTAGAAAATAAAATAATATCTCATAATTTCTTGATATTGTGCTAGAATATCTTACTTTATTTCCTACTACTAGGATCAAGTTCCTTATTCTTTTCCTGATTTCCCTTTTATTTAGGTTTGAGTCTATGTATCCCTATTTGGATAAACAACTTAATTAAGCGCTTATAGCATAAGCATCTGTGTATAAGCTATTTCAATAAAAAAAGATGAAATAAGGCCATTCTGTTTTCATATAAGCTGTAAGCTGCTTTTATTAGCTATCCTGGAGAGCTTGTTGAAGTATGCTGAAAACAACTTATGCACATGTCATAAGTTATCTTCATAAGTTCTCCAAAACATTCTCACAAATGCTTATGCTAGTTGATAAGCTCAAATTAATGCAATTCAAAGAGTCCCTAAGTTTTTTTTTTTGAAGGAAAAGAGTCCCTTAATCTTTTGTATAAAGCTGCTATGAAGTTAGTATCCAGTTATTATCAATAATATTCTAGGTTCTTAGCAAAACTCCCACACCTTCAACAGGTACATTATCAGATACACAAACACTAGGTCGAAAAAGGGTTGCCTCTGGTATTTTAGTAGAGAAAACTGTCGAGAGGAGGCAAAAGAGGATGATAAAAAATAGGGAATCTGCTGCTCGTTCACGAGCAAGAAGACAGGTTATACTCTTTTCTCTGTGAGGTGTGGTGTTATATATTTGAAGTCCTGTTTGTTTTTTTTGGTTTGACACGAGGAAATACCCATATGCCAATGAAATGTGCAGGCTTATACACAAGAACTGGAACTTAAAGTTTCGCGTTTAGAAGAGGAAAATGAAAGGCTTAGAAGACAGAATGTAAGTTATGCCTTCATGAATATGTATTCTTTTTTTAATATACAGTAATTTTCTTTCTTAATTGCACTTTGTTCTGTGAGCTTTGGTATATAAATCTTTATTTTGCATCAAATTGTTTAATATTTAAAAAAAAAAAAAGTAAAAAGAAAATTTTCTTGGGATGAAGAAAAAGTTATAGCGCTAATTGATACATAATGAGTTTAGTTGCTGCCAATTGATGCATTACAGAAAACTCCACTTTGGCCATGTTGATATTTCCTTAATACTTATCGATATGCCTAATATCTTAGAAAGTTATAGCGCTAGAAGACAATAAAGATTTTATATTTCCTTTGGTTGGTTTGTTTATTTAGACAGAGTGGTTGGATTTCAAGCAATGAGAGTTGGAATGGTAGCATAGAAAAAATCAGAATGCCCTGCACTTTTGGGATTATGTCAGATTAAGCAAAGAAAGCTGTATGATACATGCATACATGTTATACATCTACTCAGATGCTTACCGATTCAATATTCAAAAGTAATTGAAGATAGAGAAATGCTAACAAGTGCCCTTAGGGGTTAAGAGGTTTAAAATGGAAACTTTGTCTTGGAATTTGTGTATTCAGCACATTAAAATATAAAAAAGTAACTTTTTCTACATATAAGTTATCAATTGTTTCCATTTTTTGAATCCTTAACAAGTGCCCTTCAAGTGCCCTAAGGGCACTTGTTAGCAAAAGGGCACTTGTTAGCAAGACCCTTGAAGATATATATCTATAACATGTTACAAACTTGAACTTCATTCATCAAACTGTAAGACCTCGGAACAAGCGGTACATAGCTCTCTGATACTGCTTTACCAATAACATGTCGTCTATGGACCAACCATATGGTATGTGGTGGACTGATTCTTTGAGTATGCTACCTACTAACTACTGTTGTTTTTCTTGTTTGTTGATTTTTCGGGATAATTGGAGACATAATGATACCATTCATGTCTCTACTTAAGAGCATAAAACTTAGGTTTTTGGCTTAACACAACCCTACAAAACCGGTTTGTAAGGTGAAGAATGCCTAAGCTATATAACTCTATTTTAGGCTTTTGGACCGAAGACAACCTCACAAAACTGATTTCAAAGCAATGATTGTCTAAGCTTTATAAGTTTTATTCAAACTATATCACTAATCAAAGTGAGACTTGGGTTTTTTCTTTTCGATAAAATTCTAGGATAGTTAGTTTGTAACTTTTGTTAGAGGAGTTTCTACATCGTTGAAGTAAATACTATGCATGTAAAGAAGTACTTGTACGATAACACCATAAAATATCATTCTAGATAGTTCATCTCTACTCACGGTAACATTTTTGTTGTCACAGGAGATAGAGAAGGAGGTACCAACTGCGCCACCACCCGAGCCTAAAAATCAGCTCCGCAGAACTAATTCAGCATCCTTTTGA

Protein sequence

>MS.gene62322.t1

MGSQGGTVSESKTLPLSRSGSLYNLTLDEVQNHLGNLGKPLGSMNLDELLKSVWSVEAGEVSDFGGSDVAAAAGNIQHNQLGLSSQGSLTLSGDLSKKTVDEVWKDMQGKKRGVDRDRKSREKQQTLGEMTLEDFLVKAGVVGESFHNNKDDGGLLRVDSNEDSRHNVSQHGLHWMQYPVHSVQQQQHQYEKHMMPGFAAVHAIQQPFQVAGNQVLDAAISPSSLMGTLSDTQTLGRKRVASGILVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQNEIEKEVPTAPPPEPKNQLRRTNSASF