Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47208.t1 | XP_003618910.1 | 85.8 | 324 | 41 | 4 | 1 | 322 | 1 | 321 | 4.30E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47208.t1 | Q9LES3 | 54.3 | 324 | 119 | 7 | 1 | 322 | 1 | 297 | 9.2e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47208.t1 | G7KP64 | 85.8 | 324 | 41 | 4 | 1 | 322 | 1 | 321 | 3.1e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47208.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47208 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene47208 | 0.838311 | 3.10E-57 | -1.69E-46 |
| MS.gene049711 | MS.gene47208 | 0.818192 | 2.23E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene47208 | 0.846944 | 1.58E-59 | -1.69E-46 |
| MS.gene049808 | MS.gene47208 | 0.827074 | 1.91E-54 | -1.69E-46 |
| MS.gene049824 | MS.gene47208 | 0.812284 | 4.58E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene47208 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene47208 | 0.828833 | 7.22E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene47208 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene47208 | 0.805452 | 1.33E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene47208 | 0.807985 | 3.87E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene47208 | 0.837208 | 5.95E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene47208 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene47208 | 0.823224 | 1.55E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene47208 | 0.801013 | 1.10E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene47208 | 0.816848 | 4.48E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene47208 | 0.837595 | 4.74E-57 | -1.69E-46 |
| MS.gene052133 | MS.gene47208 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene47208 | 0.810662 | 1.03E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene47208 | 0.817132 | 3.86E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene47208 | 0.812431 | 4.25E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene47208 | 0.837294 | 5.66E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene47208 | 0.80007 | 1.71E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene47208 | 0.829665 | 4.53E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene47208 | 0.810386 | 1.18E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene47208 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene47208 | 0.824647 | 7.21E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene47208 | 0.83052 | 2.80E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene47208 | 0.816543 | 5.24E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene47208 | 0.819688 | 1.02E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene47208 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene47208 | 0.822097 | 2.84E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene47208 | 0.811784 | 5.89E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene47208 | -0.836016 | 1.20E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene47208 | 0.816788 | 4.62E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene47208 | 0.844945 | 5.52E-59 | -1.69E-46 |
| MS.gene056043 | MS.gene47208 | -0.83586 | 1.31E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene47208 | 0.818948 | 1.50E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene47208 | 0.834527 | 2.85E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene47208 | 0.819594 | 1.07E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene47208 | 0.802784 | 4.76E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene47208 | 0.811921 | 5.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013906 | MS.gene47208 | PPI |
| MS.gene55561 | MS.gene47208 | PPI |
| MS.gene41906 | MS.gene47208 | PPI |
| MS.gene47208 | MS.gene83996 | PPI |
| MS.gene41866 | MS.gene47208 | PPI |
| MS.gene068056 | MS.gene47208 | PPI |
| MS.gene62322 | MS.gene47208 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47208.t1 | MTR_6g026800 | 93.827 | 324 | 15 | 4 | 1 | 322 | 1 | 321 | 0.0 | 567 |
| MS.gene47208.t1 | MTR_7g088090 | 62.840 | 331 | 103 | 9 | 1 | 322 | 1 | 320 | 4.19e-124 | 358 |
| MS.gene47208.t1 | MTR_3g010660 | 48.810 | 336 | 144 | 8 | 1 | 322 | 1 | 322 | 3.53e-91 | 275 |
| MS.gene47208.t1 | MTR_8g043960 | 50.489 | 307 | 135 | 5 | 16 | 322 | 24 | 313 | 7.86e-91 | 273 |
| MS.gene47208.t1 | MTR_4g085910 | 35.312 | 337 | 152 | 8 | 16 | 295 | 18 | 345 | 1.04e-44 | 157 |
| MS.gene47208.t1 | MTR_3g101780 | 47.097 | 155 | 68 | 5 | 2 | 156 | 14 | 154 | 4.18e-30 | 119 |
| MS.gene47208.t1 | MTR_3g101780 | 65.574 | 61 | 20 | 1 | 237 | 297 | 339 | 398 | 2.09e-16 | 79.7 |
| MS.gene47208.t1 | MTR_2g086390 | 33.893 | 298 | 138 | 12 | 20 | 302 | 12 | 265 | 1.58e-29 | 114 |
| MS.gene47208.t1 | MTR_2g086390 | 33.916 | 286 | 134 | 11 | 20 | 294 | 12 | 253 | 2.54e-29 | 114 |
| MS.gene47208.t1 | MTR_2g086340 | 36.986 | 292 | 140 | 11 | 17 | 294 | 23 | 284 | 4.18e-28 | 111 |
| MS.gene47208.t1 | MTR_5g088230 | 44.828 | 145 | 70 | 3 | 1 | 143 | 6 | 142 | 2.52e-24 | 100 |
| MS.gene47208.t1 | MTR_5g088230 | 54.023 | 87 | 39 | 1 | 236 | 322 | 184 | 269 | 1.51e-18 | 84.3 |
| MS.gene47208.t1 | MTR_5g088230 | 44.828 | 145 | 70 | 3 | 1 | 143 | 1 | 137 | 2.59e-24 | 100 |
| MS.gene47208.t1 | MTR_5g088230 | 54.023 | 87 | 39 | 1 | 236 | 322 | 179 | 264 | 1.61e-18 | 84.0 |
| MS.gene47208.t1 | MTR_7g104480 | 38.060 | 134 | 72 | 2 | 22 | 144 | 45 | 178 | 3.06e-19 | 88.2 |
| MS.gene47208.t1 | MTR_5g060990 | 26.599 | 297 | 169 | 8 | 16 | 273 | 12 | 298 | 7.52e-17 | 80.1 |
| MS.gene47208.t1 | MTR_7g015990 | 69.091 | 55 | 14 | 1 | 251 | 302 | 120 | 174 | 1.13e-13 | 68.9 |
| MS.gene47208.t1 | MTR_8g075130 | 59.649 | 57 | 20 | 1 | 245 | 298 | 99 | 155 | 1.49e-12 | 65.5 |
| MS.gene47208.t1 | MTR_5g022780 | 64.912 | 57 | 8 | 1 | 251 | 295 | 166 | 222 | 3.54e-12 | 65.9 |
| MS.gene47208.t1 | MTR_4g094390 | 54.098 | 61 | 27 | 1 | 235 | 295 | 115 | 174 | 9.11e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47208.t1 | AT3G56850 | 58.025 | 324 | 107 | 7 | 1 | 322 | 1 | 297 | 1.22e-109 | 321 |
| MS.gene47208.t1 | AT2G41070 | 49.536 | 323 | 101 | 8 | 1 | 322 | 10 | 271 | 1.62e-82 | 251 |
| MS.gene47208.t1 | AT2G41070 | 49.536 | 323 | 101 | 8 | 1 | 322 | 1 | 262 | 1.99e-82 | 250 |
| MS.gene47208.t1 | AT2G41070 | 49.536 | 323 | 101 | 8 | 1 | 322 | 1 | 262 | 1.99e-82 | 250 |
| MS.gene47208.t1 | AT2G41070 | 49.536 | 323 | 101 | 8 | 1 | 322 | 1 | 262 | 1.99e-82 | 250 |
| MS.gene47208.t1 | AT2G41070 | 48.475 | 295 | 90 | 8 | 1 | 294 | 1 | 234 | 1.01e-68 | 215 |
| MS.gene47208.t1 | AT3G44460 | 38.721 | 297 | 124 | 11 | 15 | 293 | 34 | 290 | 1.40e-30 | 118 |
| MS.gene47208.t1 | AT1G49720 | 51.748 | 143 | 55 | 5 | 9 | 144 | 18 | 153 | 3.83e-30 | 118 |
| MS.gene47208.t1 | AT1G49720 | 61.194 | 67 | 24 | 2 | 235 | 300 | 297 | 362 | 2.99e-13 | 70.5 |
| MS.gene47208.t1 | AT1G49720 | 49.660 | 147 | 62 | 4 | 5 | 144 | 12 | 153 | 3.90e-30 | 118 |
| MS.gene47208.t1 | AT1G49720 | 54.348 | 92 | 32 | 4 | 235 | 317 | 297 | 387 | 6.37e-14 | 72.4 |
| MS.gene47208.t1 | AT1G49720 | 49.660 | 147 | 62 | 4 | 5 | 144 | 12 | 153 | 3.90e-30 | 118 |
| MS.gene47208.t1 | AT1G49720 | 54.348 | 92 | 32 | 4 | 235 | 317 | 297 | 387 | 6.37e-14 | 72.4 |
| MS.gene47208.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 6.08e-28 | 112 |
| MS.gene47208.t1 | AT3G19290 | 47.126 | 87 | 43 | 1 | 212 | 295 | 310 | 396 | 3.33e-13 | 70.1 |
| MS.gene47208.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 7.42e-28 | 112 |
| MS.gene47208.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 8.20e-28 | 112 |
| MS.gene47208.t1 | AT3G19290 | 42.373 | 118 | 55 | 3 | 212 | 317 | 310 | 426 | 4.36e-13 | 70.1 |
| MS.gene47208.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 8.20e-28 | 112 |
| MS.gene47208.t1 | AT3G19290 | 42.373 | 118 | 55 | 3 | 212 | 317 | 310 | 426 | 4.36e-13 | 70.1 |
| MS.gene47208.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 8.29e-28 | 112 |
| MS.gene47208.t1 | AT3G19290 | 42.373 | 118 | 56 | 2 | 212 | 317 | 310 | 427 | 1.76e-13 | 71.2 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 3.35e-21 | 93.6 |
| MS.gene47208.t1 | AT1G45249 | 49.558 | 113 | 42 | 4 | 218 | 322 | 311 | 416 | 1.85e-17 | 82.8 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 4.17e-21 | 93.6 |
| MS.gene47208.t1 | AT1G45249 | 45.161 | 124 | 42 | 5 | 218 | 322 | 311 | 427 | 1.19e-14 | 74.7 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 36 | 192 | 4.20e-21 | 93.6 |
| MS.gene47208.t1 | AT1G45249 | 49.558 | 113 | 42 | 4 | 218 | 322 | 326 | 431 | 2.18e-17 | 82.8 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 36 | 192 | 4.20e-21 | 93.6 |
| MS.gene47208.t1 | AT1G45249 | 49.558 | 113 | 42 | 4 | 218 | 322 | 326 | 431 | 2.18e-17 | 82.8 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 4.92e-21 | 92.8 |
| MS.gene47208.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 4.92e-21 | 92.8 |
| MS.gene47208.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 6.14e-21 | 92.8 |
| MS.gene47208.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 6.14e-21 | 92.8 |
| MS.gene47208.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 6.14e-21 | 92.8 |
| MS.gene47208.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 6.14e-21 | 92.8 |
| MS.gene47208.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.92e-20 | 92.0 |
| MS.gene47208.t1 | AT4G34000 | 55.952 | 84 | 27 | 3 | 216 | 298 | 347 | 421 | 8.61e-18 | 84.0 |
| MS.gene47208.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.92e-20 | 92.0 |
| MS.gene47208.t1 | AT4G34000 | 55.952 | 84 | 27 | 3 | 216 | 298 | 347 | 421 | 8.61e-18 | 84.0 |
| MS.gene47208.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.92e-20 | 92.0 |
| MS.gene47208.t1 | AT4G34000 | 55.952 | 84 | 27 | 3 | 216 | 298 | 347 | 421 | 8.61e-18 | 84.0 |
| MS.gene47208.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 2.09e-20 | 91.7 |
| MS.gene47208.t1 | AT4G34000 | 55.000 | 80 | 27 | 2 | 216 | 295 | 347 | 417 | 7.35e-18 | 84.3 |
| MS.gene47208.t1 | AT2G36270 | 55.556 | 90 | 29 | 2 | 236 | 315 | 342 | 430 | 2.27e-16 | 79.7 |
| MS.gene47208.t1 | AT2G36270 | 33.880 | 183 | 67 | 4 | 16 | 144 | 37 | 219 | 6.82e-16 | 78.6 |
| MS.gene47208.t1 | AT2G36270 | 55.556 | 90 | 29 | 2 | 236 | 315 | 342 | 430 | 2.27e-16 | 79.7 |
| MS.gene47208.t1 | AT2G36270 | 33.880 | 183 | 67 | 4 | 16 | 144 | 37 | 219 | 6.82e-16 | 78.6 |
| MS.gene47208.t1 | AT4G35900 | 50.000 | 94 | 44 | 2 | 229 | 322 | 195 | 285 | 3.12e-16 | 78.2 |
| MS.gene47208.t1 | AT2G36270 | 70.690 | 58 | 16 | 1 | 236 | 293 | 342 | 398 | 5.59e-16 | 78.6 |
| MS.gene47208.t1 | AT2G36270 | 33.880 | 183 | 67 | 4 | 16 | 144 | 37 | 219 | 1.15e-15 | 77.8 |
| MS.gene47208.t1 | AT5G44080 | 31.799 | 239 | 100 | 10 | 98 | 319 | 120 | 312 | 1.03e-15 | 77.0 |
| MS.gene47208.t1 | AT2G17770 | 54.167 | 72 | 32 | 1 | 251 | 322 | 125 | 195 | 1.72e-14 | 71.2 |
| MS.gene47208.t1 | AT5G42910 | 38.636 | 132 | 54 | 3 | 16 | 143 | 20 | 128 | 1.78e-14 | 73.9 |
| MS.gene47208.t1 | AT1G03970 | 28.632 | 234 | 104 | 9 | 98 | 319 | 85 | 267 | 2.32e-12 | 66.6 |
Find 72 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCATCTTGGTAATTT+AGG | 0.046059 | 6.3:-17983742 | MS.gene47208:CDS |
| GATATCGCCATCTTCTTTAA+TGG | 0.187061 | 6.3:-17983176 | MS.gene47208:CDS |
| CACAAACACTAGGTCGAAAA+AGG | 0.215282 | 6.3:-17982615 | MS.gene47208:CDS |
| AAAACCATCTTGGTAATTTA+GGG | 0.238621 | 6.3:-17983741 | MS.gene47208:CDS |
| GCTGGCGAGGTTTCGGATTT+CGG | 0.287074 | 6.3:-17983661 | MS.gene47208:CDS |
| GATGACTTTGGAGGATTTCT+TGG | 0.296873 | 6.3:-17983446 | MS.gene47208:CDS |
| GGAAGAAGAGGGGTGTTGAT+AGG | 0.304171 | 6.3:-17983507 | MS.gene47208:CDS |
| CAAGGGAGTTTAACTTTGTC+TGG | 0.325021 | 6.3:-17983577 | MS.gene47208:CDS |
| TGTTGAAGCTGGCGAGGTTT+CGG | 0.333824 | 6.3:-17983668 | MS.gene47208:CDS |
| GGTTGCCGGGAATCAAGTTT+TGG | 0.343807 | 6.3:-17983206 | MS.gene47208:CDS |
| ATATCGCCATCTTCTTTAAT+GGG | 0.357518 | 6.3:-17983175 | MS.gene47208:intron |
| AGGATGATGGTGGTTTGTTA+AGG | 0.362877 | 6.3:-17983384 | MS.gene47208:CDS |
| CAAAGACTTTACCTTTATCT+AGG | 0.373965 | 6.3:-17983801 | MS.gene47208:CDS |
| TTTCGCAGCATGGTCTTCAT+TGG | 0.378952 | 6.3:-17983330 | MS.gene47208:CDS |
| TGCATCCAAAACTTGATTCC+CGG | 0.395693 | 6.3:+17983201 | None:intergenic |
| GGCTCGGGTGGCGGCGCAGT+TGG | 0.410598 | 6.3:+17981197 | None:intergenic |
| GAGGATTTCTTGGTGAAAGC+TGG | 0.421412 | 6.3:-17983436 | MS.gene47208:CDS |
| GGATGATGGTGGTTTGTTAA+GGG | 0.422756 | 6.3:-17983383 | MS.gene47208:CDS |
| GAAGAAGAGGGGTGTTGATA+GGG | 0.424019 | 6.3:-17983506 | MS.gene47208:CDS |
| ACTTTACCTTTATCTAGGTC+AGG | 0.424724 | 6.3:-17983796 | MS.gene47208:CDS |
| AAAGATCCTGACCTAGATAA+AGG | 0.429936 | 6.3:+17983790 | None:intergenic |
| TGATTCCCGGCAACCTGAAA+AGG | 0.430801 | 6.3:+17983214 | None:intergenic |
| GATGAAGTTCAAAACCATCT+TGG | 0.441683 | 6.3:-17983751 | MS.gene47208:CDS |
| TTGGTGAAAGCTGGAGTTGT+TGG | 0.447659 | 6.3:-17983427 | MS.gene47208:CDS |
| TTTCATAACAATAAGGATGA+TGG | 0.459884 | 6.3:-17983397 | MS.gene47208:CDS |
| GCAGGCTTATACACAAGAAC+TGG | 0.460547 | 6.3:-17982393 | MS.gene47208:intron |
| TTGATTCGAATGAGGATTCT+CGG | 0.469255 | 6.3:-17983360 | MS.gene47208:CDS |
| AGTGATGTTGCTGCTGCTGC+TGG | 0.483550 | 6.3:-17983634 | MS.gene47208:CDS |
| TCTTCATTGGATGCAATATC+CGG | 0.491078 | 6.3:-17983317 | MS.gene47208:CDS |
| CGGCATAATGTTTCGCAGCA+TGG | 0.496970 | 6.3:-17983340 | MS.gene47208:CDS |
| GACACTTGGTGAGATGACTT+TGG | 0.498834 | 6.3:-17983458 | MS.gene47208:CDS |
| GTTTCCCTAAATTACCAAGA+TGG | 0.502080 | 6.3:+17983737 | None:intergenic |
| GTTGCAATGAAGACATCAAA+AGG | 0.505109 | 6.3:+17981142 | None:intergenic |
| CAACTTGGTTTGAGTTCACA+AGG | 0.505242 | 6.3:-17983595 | MS.gene47208:CDS |
| CTGTCGAGAGGAGGCAAAAG+AGG | 0.507973 | 6.3:-17982564 | MS.gene47208:CDS |
| AGAGGGGTGTTGATAGGGAT+AGG | 0.509576 | 6.3:-17983501 | MS.gene47208:CDS |
| GTAGTACCCATTAAAGAAGA+TGG | 0.510152 | 6.3:+17983169 | None:intergenic |
| GCATGAACTGCCGCAAAACC+CGG | 0.510299 | 6.3:+17983247 | None:intergenic |
| GTATGAAAAGCATATGATGC+CGG | 0.511392 | 6.3:-17983266 | MS.gene47208:CDS |
| GTTAAGGGTTGATTCGAATG+AGG | 0.514656 | 6.3:-17983368 | MS.gene47208:CDS |
| GATGTTACAGGAGATAGAGA+AGG | 0.516148 | 6.3:-17981225 | MS.gene47208:intron |
| TAAAGTTTCGCGTTTAGAAG+AGG | 0.534492 | 6.3:-17982366 | MS.gene47208:CDS |
| AACCTGAAAAGGCTGTTGAA+TGG | 0.537317 | 6.3:+17983225 | None:intergenic |
| AGATATGCAAGGGAAGAAGA+GGG | 0.542486 | 6.3:-17983518 | MS.gene47208:CDS |
| AAGATATGCAAGGGAAGAAG+AGG | 0.548251 | 6.3:-17983519 | MS.gene47208:CDS |
| ACTTGGTGAGATGACTTTGG+AGG | 0.554555 | 6.3:-17983455 | MS.gene47208:CDS |
| AACATACAGCATAATCAACT+TGG | 0.566933 | 6.3:-17983610 | MS.gene47208:CDS |
| CATAACAATAAGGATGATGG+TGG | 0.567397 | 6.3:-17983394 | MS.gene47208:CDS |
| TATGAAAAGCATATGATGCC+GGG | 0.578298 | 6.3:-17983265 | MS.gene47208:CDS |
| AAAATAGGGAATCTGCTGCT+CGG | 0.583543 | 6.3:-17982534 | MS.gene47208:CDS |
| GTTGTTGCTGCTGAACAGAA+TGG | 0.584868 | 6.3:+17983293 | None:intergenic |
| GGTAATTTAGGGAAACCACT+TGG | 0.595722 | 6.3:-17983730 | MS.gene47208:CDS |
| TCGGTCACGAGCAAGAAGAC+AGG | 0.598431 | 6.3:-17982515 | MS.gene47208:intron |
| TAGTAAGAAAACTGTTGATG+AGG | 0.605589 | 6.3:-17983548 | MS.gene47208:CDS |
| AGAAAACTGTTGATGAGGTG+TGG | 0.606026 | 6.3:-17983543 | MS.gene47208:CDS |
| GTTACAGGAGATAGAGAAGG+AGG | 0.607821 | 6.3:-17981222 | MS.gene47208:intron |
| AGGTGTGGAAAGATATGCAA+GGG | 0.611551 | 6.3:-17983528 | MS.gene47208:CDS |
| GATATGCAAGGGAAGAAGAG+GGG | 0.613310 | 6.3:-17983517 | MS.gene47208:CDS |
| AGTGTGTGGAGTGTTGAAGC+TGG | 0.616392 | 6.3:-17983679 | MS.gene47208:CDS |
| ATGAGTTGCTTAAGAGTGTG+TGG | 0.618901 | 6.3:-17983693 | MS.gene47208:CDS |
| TAGAGAAAACTGTCGAGAGG+AGG | 0.623550 | 6.3:-17982573 | MS.gene47208:CDS |
| TGCTGCTGAACAGAATGGAC+CGG | 0.626230 | 6.3:+17983298 | None:intergenic |
| TAGTAGAGAAAACTGTCGAG+AGG | 0.627657 | 6.3:-17982576 | MS.gene47208:CDS |
| TTTCTCTACTAAAATACCAG+AGG | 0.634525 | 6.3:+17982588 | None:intergenic |
| GTGGAGTGTTGAAGCTGGCG+AGG | 0.635886 | 6.3:-17983674 | MS.gene47208:CDS |
| TCAAGATTCATACTTCCAAG+TGG | 0.648117 | 6.3:+17983715 | None:intergenic |
| GTTTAGAAGAGGAAAATGAA+AGG | 0.656611 | 6.3:-17982355 | MS.gene47208:CDS |
| TTATCAGATACACAAACACT+AGG | 0.668593 | 6.3:-17982625 | MS.gene47208:CDS |
| AACTTGGTTTGAGTTCACAA+GGG | 0.674938 | 6.3:-17983594 | MS.gene47208:CDS |
| GGCGAGGTTTCGGATTTCGG+CGG | 0.691722 | 6.3:-17983658 | MS.gene47208:CDS |
| AGGATGCTGAATTAGTTCTG+CGG | 0.716972 | 6.3:+17981162 | None:intergenic |
| GAGGTGTGGAAAGATATGCA+AGG | 0.743009 | 6.3:-17983529 | MS.gene47208:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAAAAAATATTCTT+GGG | - | chr6.3:17982794-17982813 | MS.gene47208:intron | 10.0% |
| !! | TATTTGAAAAAAAATATTCT+TGG | - | chr6.3:17982793-17982812 | MS.gene47208:intron | 10.0% |
| !! | CAATAAAAAAAGATGAAATA+AGG | - | chr6.3:17982033-17982052 | MS.gene47208:intron | 15.0% |
| !! | CTTCAAAAAAAAAATACTTA+GGG | + | chr6.3:17982235-17982254 | None:intergenic | 15.0% |
| !! | GTTATTATCAATAATATTCT+AGG | - | chr6.3:17982306-17982325 | MS.gene47208:intron | 15.0% |
| !! | TTATCTTGAATGATATTTAA+TGG | + | chr6.3:17983717-17983736 | None:intergenic | 15.0% |
| !!! | AGAATATTATTGATAATAAC+TGG | + | chr6.3:17982306-17982325 | None:intergenic | 15.0% |
| !! | AAAAGAGGATGATAAAAAAT+AGG | - | chr6.3:17982440-17982459 | MS.gene47208:intron | 20.0% |
| !! | AAAATAGAGTTATATAGCTT+AGG | + | chr6.3:17983475-17983494 | None:intergenic | 20.0% |
| !! | AAAGAGGATGATAAAAAATA+GGG | - | chr6.3:17982441-17982460 | MS.gene47208:intron | 20.0% |
| !! | AAGAAAATACTATGAATGTA+AGG | - | chr6.3:17983672-17983691 | MS.gene47208:CDS | 20.0% |
| !! | CCTTCAAAAAAAAAATACTT+AGG | + | chr6.3:17982236-17982255 | None:intergenic | 20.0% |
| !! | TCAAAATTTATAAGTAGTTG+AGG | - | chr6.3:17983165-17983184 | MS.gene47208:intron | 20.0% |
| !!! | AAGCTATATAACTCTATTTT+AGG | - | chr6.3:17983475-17983494 | MS.gene47208:CDS | 20.0% |
| !!! | AATATCTTACTTTATTTCCT+AGG | - | chr6.3:17981890-17981909 | MS.gene47208:intron | 20.0% |
| !!! | AGCTTTATACAAAAGATTAA+GGG | + | chr6.3:17982267-17982286 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | + | chr6.3:17981974-17981993 | None:intergenic | 20.0% |
| !!! | CCTAAGTATTTTTTTTTTGA+AGG | - | chr6.3:17982233-17982252 | MS.gene47208:intron | 20.0% |
| !!! | TGAATCTTTTCATAACAATA+AGG | - | chr6.3:17981585-17981604 | MS.gene47208:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | + | chr6.3:17981973-17981992 | None:intergenic | 20.0% |
| ! | AAAAGAATGCTTATTCATGA+AGG | + | chr6.3:17982685-17982704 | None:intergenic | 25.0% |
| ! | AGACTCAAACCTAAATAAAA+GGG | + | chr6.3:17981944-17981963 | None:intergenic | 25.0% |
| ! | TAGACTCAAACCTAAATAAA+AGG | + | chr6.3:17981945-17981964 | None:intergenic | 25.0% |
| ! | TATTGAAATAGCTTATACAC+AGG | + | chr6.3:17982018-17982037 | None:intergenic | 25.0% |
| ! | TTTCATAACAATAAGGATGA+TGG | - | chr6.3:17981592-17981611 | MS.gene47208:intron | 25.0% |
| !! | AAAACCATCTTGGTAATTTA+GGG | - | chr6.3:17981248-17981267 | MS.gene47208:intron | 25.0% |
| !! | CAGCTTTATACAAAAGATTA+AGG | + | chr6.3:17982268-17982287 | None:intergenic | 25.0% |
| !! | TACTTAAGAGCATAAAACTT+AGG | - | chr6.3:17983400-17983419 | MS.gene47208:CDS | 25.0% |
| !!! | TGTTGATTTTTCTGGATAAT+TGG | - | chr6.3:17983351-17983370 | MS.gene47208:CDS | 25.0% |
| !!! | TTCTTGTTTGTTGATTTTTC+TGG | - | chr6.3:17983343-17983362 | MS.gene47208:CDS | 25.0% |
| AAATAAGCAAACCAACCAAA+GGG | + | chr6.3:17982994-17983013 | None:intergenic | 30.0% | |
| AACATACAGCATAATCAACT+TGG | - | chr6.3:17981379-17981398 | MS.gene47208:intron | 30.0% | |
| AAGACAACATGTTATTGGTA+AGG | + | chr6.3:17983279-17983298 | None:intergenic | 30.0% | |
| AGATAATTCATCTCTACTCA+CGG | - | chr6.3:17983731-17983750 | MS.gene47208:CDS | 30.0% | |
| AGGCATATCGATAAGTATTA+AGG | + | chr6.3:17982916-17982935 | None:intergenic | 30.0% | |
| ATATCGCCATCTTCTTTAAT+GGG | - | chr6.3:17981814-17981833 | MS.gene47208:intron | 30.0% | |
| CAAAGACTTTACCTTTATCT+AGG | - | chr6.3:17981188-17981207 | MS.gene47208:CDS | 30.0% | |
| CAGCTTATATGAAAACAGAT+TGG | + | chr6.3:17982059-17982078 | None:intergenic | 30.0% | |
| CTATAACTTCCTAAGACATT+AGG | + | chr6.3:17982936-17982955 | None:intergenic | 30.0% | |
| GAAAAACAACAGTAGTTAGT+AGG | + | chr6.3:17983326-17983345 | None:intergenic | 30.0% | |
| GTATTAAGGAAATATCGACA+TGG | + | chr6.3:17982902-17982921 | None:intergenic | 30.0% | |
| GTTTAGAAGAGGAAAATGAA+AGG | - | chr6.3:17982634-17982653 | MS.gene47208:intron | 30.0% | |
| TAAATAAGCAAACCAACCAA+AGG | + | chr6.3:17982995-17983014 | None:intergenic | 30.0% | |
| TACCAATAACATGTTGTCTT+TGG | - | chr6.3:17983279-17983298 | MS.gene47208:CDS | 30.0% | |
| TAGTAAGAAAACTGTTGATG+AGG | - | chr6.3:17981441-17981460 | MS.gene47208:intron | 30.0% | |
| TCAAACCGAAAAAAACAAAC+AGG | + | chr6.3:17982544-17982563 | None:intergenic | 30.0% | |
| TTATCAGATACACAAACACT+AGG | - | chr6.3:17982364-17982383 | MS.gene47208:CDS | 30.0% | |
| TTTCTCTACTAAAATACCAG+AGG | + | chr6.3:17982404-17982423 | None:intergenic | 30.0% | |
| ! | AAGCATTTGTGAGAATGTTT+TGG | + | chr6.3:17982172-17982191 | None:intergenic | 30.0% |
| ! | CAAAACCATCTTGGTAATTT+AGG | - | chr6.3:17981247-17981266 | MS.gene47208:intron | 30.0% |
| ! | GGTAACATTTTTGATGTTAC+AGG | - | chr6.3:17983752-17983771 | MS.gene47208:CDS | 30.0% |
| !! | TAGTTTGTAGCTTTTGTTAG+CGG | - | chr6.3:17983633-17983652 | MS.gene47208:CDS | 30.0% |
| !!! | ACTTTGAAATCAGTTTTGTG+AGG | + | chr6.3:17983519-17983538 | None:intergenic | 30.0% |
| !!! | GAAGTCCTGTTTGTTTTTTT+CGG | - | chr6.3:17982536-17982555 | MS.gene47208:CDS | 30.0% |
| AAAGATCCTGACCTAGATAA+AGG | + | chr6.3:17981202-17981221 | None:intergenic | 35.0% | |
| ACAAACACTAGGTCGAAAAA+GGG | - | chr6.3:17982375-17982394 | MS.gene47208:CDS | 35.0% | |
| ACCTAAATAAAAGGGACATC+AGG | + | chr6.3:17981936-17981955 | None:intergenic | 35.0% | |
| ACTTTACCTTTATCTAGGTC+AGG | - | chr6.3:17981193-17981212 | MS.gene47208:CDS | 35.0% | |
| AGAATAAGGAACTTGATCCT+AGG | + | chr6.3:17981910-17981929 | None:intergenic | 35.0% | |
| ATCGATATGCCTAATGTCTT+AGG | - | chr6.3:17982924-17982943 | MS.gene47208:intron | 35.0% | |
| CATTACAGAAAACTCCACTT+TGG | - | chr6.3:17982876-17982895 | MS.gene47208:intron | 35.0% | |
| CTCTTAAGTAGAGACATGAA+TGG | + | chr6.3:17983390-17983409 | None:intergenic | 35.0% | |
| GATATCGCCATCTTCTTTAA+TGG | - | chr6.3:17981813-17981832 | MS.gene47208:intron | 35.0% | |
| GATGAAGTTCAAAACCATCT+TGG | - | chr6.3:17981238-17981257 | MS.gene47208:intron | 35.0% | |
| GGATTTCAATGAATGAGAGT+TGG | - | chr6.3:17983027-17983046 | MS.gene47208:intron | 35.0% | |
| GTAGTACCCATTAAAGAAGA+TGG | + | chr6.3:17981823-17981842 | None:intergenic | 35.0% | |
| GTCCAAAGACAACATGTTAT+TGG | + | chr6.3:17983284-17983303 | None:intergenic | 35.0% | |
| GTTTCCCTAAATTACCAAGA+TGG | + | chr6.3:17981255-17981274 | None:intergenic | 35.0% | |
| GTTTGCTTATTTAGACAGAG+TGG | - | chr6.3:17983002-17983021 | MS.gene47208:intron | 35.0% | |
| TAAAGTTTCGCGTTTAGAAG+AGG | - | chr6.3:17982623-17982642 | MS.gene47208:CDS | 35.0% | |
| TATAAGCCTGCACATTTCAT+TGG | + | chr6.3:17982587-17982606 | None:intergenic | 35.0% | |
| TATCAATTGCAGCAACTGAA+GGG | + | chr6.3:17982856-17982875 | None:intergenic | 35.0% | |
| TCAAGATTCATACTTCCAAG+TGG | + | chr6.3:17981277-17981296 | None:intergenic | 35.0% | |
| TCAATGAATGAGAGTTGGAA+TGG | - | chr6.3:17983032-17983051 | MS.gene47208:intron | 35.0% | |
| TCTTCATTGGATGCAATATC+CGG | - | chr6.3:17981672-17981691 | MS.gene47208:intron | 35.0% | |
| TGAGTCTATGTATCCCTATT+TGG | - | chr6.3:17981957-17981976 | MS.gene47208:intron | 35.0% | |
| TGCACATTTCATTGGCATAT+GGG | + | chr6.3:17982579-17982598 | None:intergenic | 35.0% | |
| TGTTATTGGTAAGGCAGTAT+CGG | + | chr6.3:17983270-17983289 | None:intergenic | 35.0% | |
| TTCCTCAAACTATAAGACCT+CGG | - | chr6.3:17983224-17983243 | MS.gene47208:CDS | 35.0% | |
| ! | AACTTGGTTTGAGTTCACAA+GGG | - | chr6.3:17981395-17981414 | MS.gene47208:intron | 35.0% |
| ! | AGTTTGTAGCTTTTGTTAGC+GGG | - | chr6.3:17983634-17983653 | MS.gene47208:CDS | 35.0% |
| ! | CATAACAATAAGGATGATGG+TGG | - | chr6.3:17981595-17981614 | MS.gene47208:intron | 35.0% |
| ! | GAGCATAAAACTTAGGTTGT+TGG | - | chr6.3:17983407-17983426 | MS.gene47208:CDS | 35.0% |
| ! | GTATGAAAAGCATATGATGC+CGG | - | chr6.3:17981723-17981742 | MS.gene47208:intron | 35.0% |
| ! | GTTATACTCTTTTCTCTGTG+TGG | - | chr6.3:17982496-17982515 | MS.gene47208:intron | 35.0% |
| ! | TATGAAAAGCATATGATGCC+GGG | - | chr6.3:17981724-17981743 | MS.gene47208:intron | 35.0% |
| ! | TCTGATAATGTACCTGTTGA+AGG | + | chr6.3:17982352-17982371 | None:intergenic | 35.0% |
| ! | TTGATTCGAATGAGGATTCT+CGG | - | chr6.3:17981629-17981648 | MS.gene47208:intron | 35.0% |
| ! | TTTATAACTTGTCCTCCCTT+TGG | - | chr6.3:17982976-17982995 | MS.gene47208:intron | 35.0% |
| !! | TCCTGATGTCCCTTTTATTT+AGG | - | chr6.3:17981932-17981951 | MS.gene47208:intron | 35.0% |
| AAAATAGGGAATCTGCTGCT+CGG | - | chr6.3:17982455-17982474 | MS.gene47208:intron | 40.0% | |
| AAATATCGACATGGCCAAAG+TGG | + | chr6.3:17982893-17982912 | None:intergenic | 40.0% | |
| AACCTGAAAAGGCTGTTGAA+TGG | + | chr6.3:17981767-17981786 | None:intergenic | 40.0% | |
| AAGATATGCAAGGGAAGAAG+AGG | - | chr6.3:17981470-17981489 | MS.gene47208:intron | 40.0% | |
| AGATATGCAAGGGAAGAAGA+GGG | - | chr6.3:17981471-17981490 | MS.gene47208:intron | 40.0% | |
| AGGTGTGGAAAGATATGCAA+GGG | - | chr6.3:17981461-17981480 | MS.gene47208:intron | 40.0% | |
| CACAAACACTAGGTCGAAAA+AGG | - | chr6.3:17982374-17982393 | MS.gene47208:CDS | 40.0% | |
| CATATGCCAATGAAATGTGC+AGG | - | chr6.3:17982578-17982597 | MS.gene47208:CDS | 40.0% | |
| CGTGAAAAACAACAGACACT+TGG | - | chr6.3:17981517-17981536 | MS.gene47208:intron | 40.0% | |
| CTCTAGTCAAAGTGAGACTT+GGG | - | chr6.3:17983579-17983598 | MS.gene47208:CDS | 40.0% | |
| CTGCACATTTCATTGGCATA+TGG | + | chr6.3:17982580-17982599 | None:intergenic | 40.0% | |
| GATGTTACAGGAGATAGAGA+AGG | - | chr6.3:17983764-17983783 | MS.gene47208:CDS | 40.0% | |
| GCACTTTGATCTATGAGCTT+TGG | - | chr6.3:17982736-17982755 | MS.gene47208:intron | 40.0% | |
| GCTTATTTAGACAGAGTGGT+TGG | - | chr6.3:17983006-17983025 | MS.gene47208:intron | 40.0% | |
| GGGACATCAGGAAAAGAATA+AGG | + | chr6.3:17981924-17981943 | None:intergenic | 40.0% | |
| GGTAATTTAGGGAAACCACT+TGG | - | chr6.3:17981259-17981278 | MS.gene47208:intron | 40.0% | |
| GTATCAATTGCAGCAACTGA+AGG | + | chr6.3:17982857-17982876 | None:intergenic | 40.0% | |
| TAATGTACCTGTTGAAGGTG+TGG | + | chr6.3:17982347-17982366 | None:intergenic | 40.0% | |
| TAGTAGAGAAAACTGTCGAG+AGG | - | chr6.3:17982413-17982432 | MS.gene47208:intron | 40.0% | |
| TCTCTAGTCAAAGTGAGACT+TGG | - | chr6.3:17983578-17983597 | MS.gene47208:CDS | 40.0% | |
| TGCATCCAAAACTTGATTCC+CGG | + | chr6.3:17981791-17981810 | None:intergenic | 40.0% | |
| TTAACGCAACCCTACAAAAC+CGG | - | chr6.3:17983431-17983450 | MS.gene47208:CDS | 40.0% | |
| ! | AATGTACCTGTTGAAGGTGT+GGG | + | chr6.3:17982346-17982365 | None:intergenic | 40.0% |
| ! | AGAAAACTGTTGATGAGGTG+TGG | - | chr6.3:17981446-17981465 | MS.gene47208:intron | 40.0% |
| ! | ATGAGTTGCTTAAGAGTGTG+TGG | - | chr6.3:17981296-17981315 | MS.gene47208:intron | 40.0% |
| ! | CAACTTGGTTTGAGTTCACA+AGG | - | chr6.3:17981394-17981413 | MS.gene47208:intron | 40.0% |
| ! | CAAGGGAGTTTAACTTTGTC+TGG | - | chr6.3:17981412-17981431 | MS.gene47208:intron | 40.0% |
| ! | GACATAATCCCAAAAGTGCA+GGG | + | chr6.3:17983080-17983099 | None:intergenic | 40.0% |
| ! | GATGACTTTGGAGGATTTCT+TGG | - | chr6.3:17981543-17981562 | MS.gene47208:intron | 40.0% |
| ! | TGACATAATCCCAAAAGTGC+AGG | + | chr6.3:17983081-17983100 | None:intergenic | 40.0% |
| ! | TTCCGAGGTCTTATAGTTTG+AGG | + | chr6.3:17983229-17983248 | None:intergenic | 40.0% |
| !! | AGGATGATGGTGGTTTGTTA+AGG | - | chr6.3:17981605-17981624 | MS.gene47208:intron | 40.0% |
| !! | AGGATGCTGAATTAGTTCTG+CGG | + | chr6.3:17983830-17983849 | None:intergenic | 40.0% |
| !! | GGATGATGGTGGTTTGTTAA+GGG | - | chr6.3:17981606-17981625 | MS.gene47208:intron | 40.0% |
| !! | GTTAAGGGTTGATTCGAATG+AGG | - | chr6.3:17981621-17981640 | MS.gene47208:intron | 40.0% |
| !!! | GTTTTTTTCGGTTTGACACG+AGG | - | chr6.3:17982548-17982567 | MS.gene47208:CDS | 40.0% |
| !!! | TGCACTTTTGGGATTATGTC+AGG | - | chr6.3:17983080-17983099 | MS.gene47208:intron | 40.0% |
| AAAACTCCCACACCTTCAAC+AGG | - | chr6.3:17982337-17982356 | MS.gene47208:intron | 45.0% | |
| CTATAAGACCTCGGAACAAG+CGG | - | chr6.3:17983233-17983252 | MS.gene47208:CDS | 45.0% | |
| GAGAGTTGGAATGGTAGCAT+AGG | - | chr6.3:17983041-17983060 | MS.gene47208:intron | 45.0% | |
| GAGGATTTCTTGGTGAAAGC+TGG | - | chr6.3:17981553-17981572 | MS.gene47208:intron | 45.0% | |
| GAGGTGTGGAAAGATATGCA+AGG | - | chr6.3:17981460-17981479 | MS.gene47208:intron | 45.0% | |
| GATATGCAAGGGAAGAAGAG+GGG | - | chr6.3:17981472-17981491 | MS.gene47208:intron | 45.0% | |
| GCAGGCTTATACACAAGAAC+TGG | - | chr6.3:17982596-17982615 | MS.gene47208:CDS | 45.0% | |
| GCATTCTTCACCTTACAAGC+CGG | + | chr6.3:17983453-17983472 | None:intergenic | 45.0% | |
| GCTGCTTGTATTAGCTATCC+TGG | - | chr6.3:17982082-17982101 | MS.gene47208:intron | 45.0% | |
| GTTACAGGAGATAGAGAAGG+AGG | - | chr6.3:17983767-17983786 | MS.gene47208:CDS | 45.0% | |
| GTTGTTGCTGCTGAACAGAA+TGG | + | chr6.3:17981699-17981718 | None:intergenic | 45.0% | |
| TAAGCAAACCAACCAAAGGG+AGG | + | chr6.3:17982991-17983010 | None:intergenic | 45.0% | |
| TAGAGAAAACTGTCGAGAGG+AGG | - | chr6.3:17982416-17982435 | MS.gene47208:intron | 45.0% | |
| TTGGTGAAAGCTGGAGTTGT+TGG | - | chr6.3:17981562-17981581 | MS.gene47208:intron | 45.0% | |
| TTTCGCAGCATGGTCTTCAT+TGG | - | chr6.3:17981659-17981678 | MS.gene47208:intron | 45.0% | |
| ! | ACTCTTTTCTCTGTGTGGTG+TGG | - | chr6.3:17982501-17982520 | MS.gene47208:intron | 45.0% |
| ! | ACTTGGTGAGATGACTTTGG+AGG | - | chr6.3:17981534-17981553 | MS.gene47208:intron | 45.0% |
| ! | ATCAGAATGCCCTGCACTTT+TGG | - | chr6.3:17983068-17983087 | MS.gene47208:intron | 45.0% |
| ! | GACACTTGGTGAGATGACTT+TGG | - | chr6.3:17981531-17981550 | MS.gene47208:intron | 45.0% |
| ! | TAACTTGTCCTCCCTTTGGT+TGG | - | chr6.3:17982980-17982999 | MS.gene47208:intron | 45.0% |
| ! | TCAGAATGCCCTGCACTTTT+GGG | - | chr6.3:17983069-17983088 | MS.gene47208:intron | 45.0% |
| ! | TGCCATTCAACAGCCTTTTC+AGG | - | chr6.3:17981762-17981781 | MS.gene47208:intron | 45.0% |
| !! | ACCTTACAAGCCGGTTTTGT+AGG | + | chr6.3:17983444-17983463 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+GGG | + | chr6.3:17983443-17983462 | None:intergenic | 45.0% |
| !! | GAAGAAGAGGGGTGTTGATA+GGG | - | chr6.3:17981483-17981502 | MS.gene47208:intron | 45.0% |
| !! | GTTCTGCGGAGCTGATTTTT+AGG | + | chr6.3:17983816-17983835 | None:intergenic | 45.0% |
| CATACTTCCACAAGCTCTCC+AGG | + | chr6.3:17982103-17982122 | None:intergenic | 50.0% | |
| CGGCATAATGTTTCGCAGCA+TGG | - | chr6.3:17981649-17981668 | MS.gene47208:intron | 50.0% | |
| GTTATGTACCGCTTGTTCCG+AGG | + | chr6.3:17983244-17983263 | None:intergenic | 50.0% | |
| TAGCTATCCTGGAGAGCTTG+TGG | - | chr6.3:17982093-17982112 | MS.gene47208:intron | 50.0% | |
| TGATTCCCGGCAACCTGAAA+AGG | + | chr6.3:17981778-17981797 | None:intergenic | 50.0% | |
| TGCTGCTGAACAGAATGGAC+CGG | + | chr6.3:17981694-17981713 | None:intergenic | 50.0% | |
| TGTTGAAGCTGGCGAGGTTT+CGG | - | chr6.3:17981321-17981340 | MS.gene47208:intron | 50.0% | |
| ! | GCATATGATGCCGGGTTTTG+CGG | - | chr6.3:17981732-17981751 | MS.gene47208:intron | 50.0% |
| ! | GGTTGCCGGGAATCAAGTTT+TGG | - | chr6.3:17981783-17981802 | MS.gene47208:intron | 50.0% |
| !! | AGAGGGGTGTTGATAGGGAT+AGG | - | chr6.3:17981488-17981507 | MS.gene47208:intron | 50.0% |
| !! | AGCTGATTTTTAGGCTCGGG+TGG | + | chr6.3:17983807-17983826 | None:intergenic | 50.0% |
| !! | AGTGTGTGGAGTGTTGAAGC+TGG | - | chr6.3:17981310-17981329 | MS.gene47208:intron | 50.0% |
| !! | CCCTACAAAACCGGCTTGTA+AGG | - | chr6.3:17983440-17983459 | MS.gene47208:CDS | 50.0% |
| !! | CGGAGCTGATTTTTAGGCTC+GGG | + | chr6.3:17983810-17983829 | None:intergenic | 50.0% |
| !! | GCGGAGCTGATTTTTAGGCT+CGG | + | chr6.3:17983811-17983830 | None:intergenic | 50.0% |
| !! | GGAAGAAGAGGGGTGTTGAT+AGG | - | chr6.3:17981482-17981501 | MS.gene47208:intron | 50.0% |
| !! | TGATTTTTAGGCTCGGGTGG+CGG | + | chr6.3:17983804-17983823 | None:intergenic | 50.0% |
| !!! | AACAGCCTTTTCAGGTTGCC+GGG | - | chr6.3:17981770-17981789 | MS.gene47208:intron | 50.0% |
| !!! | CAACAGCCTTTTCAGGTTGC+CGG | - | chr6.3:17981769-17981788 | MS.gene47208:intron | 50.0% |
| AGTGATGTTGCTGCTGCTGC+TGG | - | chr6.3:17981355-17981374 | MS.gene47208:intron | 55.0% | |
| CTGTCGAGAGGAGGCAAAAG+AGG | - | chr6.3:17982425-17982444 | MS.gene47208:intron | 55.0% | |
| GCATGAACTGCCGCAAAACC+CGG | + | chr6.3:17981745-17981764 | None:intergenic | 55.0% | |
| GCTGGCGAGGTTTCGGATTT+CGG | - | chr6.3:17981328-17981347 | MS.gene47208:intron | 55.0% | |
| GGTCGAAAAAGGGTTGCCTC+TGG | - | chr6.3:17982385-17982404 | MS.gene47208:CDS | 55.0% | |
| TCGGTCACGAGCAAGAAGAC+AGG | - | chr6.3:17982474-17982493 | MS.gene47208:intron | 55.0% | |
| GGCGAGGTTTCGGATTTCGG+CGG | - | chr6.3:17981331-17981350 | MS.gene47208:intron | 60.0% | |
| !! | GTGGAGTGTTGAAGCTGGCG+AGG | - | chr6.3:17981315-17981334 | MS.gene47208:intron | 60.0% |
| !! | GGCTCGGGTGGCGGCGCAGT+TGG | + | chr6.3:17983795-17983814 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 17981157 | 17983854 | 17981157 | ID=MS.gene47208 |
| chr6.3 | mRNA | 17981157 | 17983854 | 17981157 | ID=MS.gene47208.t1;Parent=MS.gene47208 |
| chr6.3 | exon | 17983176 | 17983854 | 17983176 | ID=MS.gene47208.t1.exon1;Parent=MS.gene47208.t1 |
| chr6.3 | CDS | 17983176 | 17983854 | 17983176 | ID=cds.MS.gene47208.t1;Parent=MS.gene47208.t1 |
| chr6.3 | exon | 17982516 | 17982652 | 17982516 | ID=MS.gene47208.t1.exon2;Parent=MS.gene47208.t1 |
| chr6.3 | CDS | 17982516 | 17982652 | 17982516 | ID=cds.MS.gene47208.t1;Parent=MS.gene47208.t1 |
| chr6.3 | exon | 17982340 | 17982411 | 17982340 | ID=MS.gene47208.t1.exon3;Parent=MS.gene47208.t1 |
| chr6.3 | CDS | 17982340 | 17982411 | 17982340 | ID=cds.MS.gene47208.t1;Parent=MS.gene47208.t1 |
| chr6.3 | exon | 17981157 | 17981237 | 17981157 | ID=MS.gene47208.t1.exon4;Parent=MS.gene47208.t1 |
| chr6.3 | CDS | 17981157 | 17981237 | 17981157 | ID=cds.MS.gene47208.t1;Parent=MS.gene47208.t1 |
| Gene Sequence |
| Protein sequence |
