Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83996.t1 | XP_003618910.1 | 88.6 | 281 | 14 | 5 | 1 | 279 | 1 | 265 | 2.80E-122 | 448.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83996.t1 | Q9LES3 | 55.8 | 310 | 95 | 8 | 1 | 308 | 1 | 270 | 8.6e-64 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83996.t1 | G7KP64 | 88.6 | 281 | 14 | 5 | 1 | 279 | 1 | 265 | 2.0e-122 | 448.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83996.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene83996 | 0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene83996 | 0.83077 | 2.44E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene83996 | 0.835713 | 1.43E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene83996 | 0.824908 | 6.25E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene83996 | 0.835096 | 2.05E-56 | -1.69E-46 |
| MS.gene049807 | MS.gene83996 | 0.821918 | 3.13E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene83996 | 0.822832 | 1.92E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene83996 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene83996 | 0.849523 | 3.06E-60 | -1.69E-46 |
| MS.gene049825 | MS.gene83996 | 0.844055 | 9.58E-59 | -1.69E-46 |
| MS.gene049850 | MS.gene83996 | 0.839928 | 1.18E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene83996 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene83996 | 0.805587 | 1.24E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene83996 | 0.822868 | 1.88E-53 | -1.69E-46 |
| MS.gene05016 | MS.gene83996 | 0.81581 | 7.64E-52 | -1.69E-46 |
| MS.gene050241 | MS.gene83996 | 0.816945 | 4.26E-52 | -1.69E-46 |
| MS.gene050273 | MS.gene83996 | 0.811907 | 5.53E-51 | -1.69E-46 |
| MS.gene05045 | MS.gene83996 | 0.818033 | 2.42E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene83996 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene83996 | 0.821634 | 3.64E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene83996 | 0.806877 | 6.64E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene83996 | 0.823851 | 1.11E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene83996 | 0.889846 | 1.68E-73 | -1.69E-46 |
| MS.gene050808 | MS.gene83996 | 0.843489 | 1.36E-58 | -1.69E-46 |
| MS.gene051180 | MS.gene83996 | 0.826431 | 2.72E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene83996 | 0.812966 | 3.25E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene83996 | 0.828378 | 9.29E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene83996 | 0.826349 | 2.85E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene83996 | 0.814689 | 1.36E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene83996 | 0.826965 | 2.03E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene83996 | 0.811175 | 7.99E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene83996 | 0.849217 | 3.73E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene83996 | 0.858948 | 5.80E-63 | -1.69E-46 |
| MS.gene052133 | MS.gene83996 | 0.826319 | 2.90E-54 | -1.69E-46 |
| MS.gene052239 | MS.gene83996 | -0.815297 | 9.94E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene83996 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene83996 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene83996 | 0.848004 | 8.08E-60 | -1.69E-46 |
| MS.gene052519 | MS.gene83996 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene83996 | 0.805975 | 1.03E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene83996 | 0.808021 | 3.80E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene83996 | 0.807853 | 4.13E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene83996 | 0.840063 | 1.09E-57 | -1.69E-46 |
| MS.gene052732 | MS.gene83996 | 0.800881 | 1.17E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene83996 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene83996 | 0.819149 | 1.35E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene83996 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene83996 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene83996 | 0.815868 | 7.41E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene83996 | 0.815735 | 7.94E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene83996 | 0.841612 | 4.28E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene83996 | 0.852862 | 3.49E-61 | -1.69E-46 |
| MS.gene053563 | MS.gene83996 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene83996 | 0.85264 | 4.04E-61 | -1.69E-46 |
| MS.gene053597 | MS.gene83996 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene053599 | MS.gene83996 | 0.827636 | 1.40E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene83996 | 0.847875 | 8.76E-60 | -1.69E-46 |
| MS.gene053931 | MS.gene83996 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene83996 | 0.842116 | 3.15E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene83996 | 0.830457 | 2.91E-55 | -1.69E-46 |
| MS.gene055144 | MS.gene83996 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene83996 | 0.80813 | 3.60E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene83996 | 0.848279 | 6.78E-60 | -1.69E-46 |
| MS.gene055466 | MS.gene83996 | 0.856369 | 3.37E-62 | -1.69E-46 |
| MS.gene055468 | MS.gene83996 | 0.848389 | 6.32E-60 | -1.69E-46 |
| MS.gene055469 | MS.gene83996 | 0.818538 | 1.86E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene83996 | 0.854448 | 1.22E-61 | -1.69E-46 |
| MS.gene055537 | MS.gene83996 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene83996 | -0.852081 | 5.83E-61 | -1.69E-46 |
| MS.gene055818 | MS.gene83996 | 0.803795 | 2.94E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene83996 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene83996 | 0.845918 | 3.01E-59 | -1.69E-46 |
| MS.gene056005 | MS.gene83996 | 0.867869 | 9.96E-66 | -1.69E-46 |
| MS.gene056043 | MS.gene83996 | -0.840506 | 8.35E-58 | -1.69E-46 |
| MS.gene056136 | MS.gene83996 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene83996 | 0.844125 | 9.17E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene83996 | 0.835498 | 1.62E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene83996 | 0.830961 | 2.19E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene83996 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene056643 | MS.gene83996 | 0.833369 | 5.55E-56 | -1.69E-46 |
| MS.gene057060 | MS.gene83996 | 0.835474 | 1.64E-56 | -1.69E-46 |
| MS.gene057287 | MS.gene83996 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene83996 | 0.822803 | 1.95E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene83996 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene057694 | MS.gene83996 | 0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene83996 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene058009 | MS.gene83996 | 0.802213 | 6.24E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene83996 | 0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene83996 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene058339 | MS.gene83996 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene83996 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene83996 | 0.837306 | 5.62E-57 | -1.69E-46 |
| MS.gene058852 | MS.gene83996 | 0.839053 | 1.99E-57 | -1.69E-46 |
| MS.gene059375 | MS.gene83996 | 0.815768 | 7.80E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene83996 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene83996 | 0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene83996 | 0.81312 | 3.01E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene83996 | 0.834582 | 2.76E-56 | -1.69E-46 |
| MS.gene059842 | MS.gene83996 | 0.825205 | 5.32E-54 | -1.69E-46 |
| MS.gene059937 | MS.gene83996 | 0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene83996 | 0.824428 | 8.11E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene83996 | 0.816295 | 5.95E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene83996 | 0.834572 | 2.77E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene83996 | 0.867664 | 1.16E-65 | -1.69E-46 |
| MS.gene060603 | MS.gene83996 | 0.817466 | 3.25E-52 | -1.69E-46 |
| MS.gene061176 | MS.gene83996 | 0.822364 | 2.46E-53 | -1.69E-46 |
| MS.gene061177 | MS.gene83996 | 0.822154 | 2.76E-53 | -1.69E-46 |
| MS.gene061178 | MS.gene83996 | 0.822125 | 2.80E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013906 | MS.gene83996 | PPI |
| MS.gene41906 | MS.gene83996 | PPI |
| MS.gene068056 | MS.gene83996 | PPI |
| MS.gene47208 | MS.gene83996 | PPI |
| MS.gene41866 | MS.gene83996 | PPI |
| MS.gene55561 | MS.gene83996 | PPI |
| MS.gene62322 | MS.gene83996 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83996.t1 | MTR_6g026800 | 89.711 | 311 | 14 | 5 | 1 | 309 | 1 | 295 | 0.0 | 504 |
| MS.gene83996.t1 | MTR_7g088090 | 60.759 | 316 | 91 | 10 | 1 | 307 | 1 | 292 | 7.45e-107 | 314 |
| MS.gene83996.t1 | MTR_8g043960 | 49.315 | 292 | 118 | 5 | 16 | 307 | 24 | 285 | 3.89e-80 | 246 |
| MS.gene83996.t1 | MTR_3g010660 | 48.254 | 315 | 136 | 8 | 1 | 308 | 1 | 295 | 7.81e-79 | 243 |
| MS.gene83996.t1 | MTR_4g085910 | 36.686 | 338 | 159 | 10 | 16 | 308 | 18 | 345 | 5.50e-47 | 162 |
| MS.gene83996.t1 | MTR_3g101780 | 47.097 | 155 | 68 | 5 | 2 | 156 | 14 | 154 | 2.06e-30 | 119 |
| MS.gene83996.t1 | MTR_3g101780 | 72.000 | 50 | 14 | 0 | 259 | 308 | 347 | 396 | 3.13e-16 | 79.0 |
| MS.gene83996.t1 | MTR_2g086390 | 33.893 | 298 | 131 | 12 | 20 | 307 | 12 | 253 | 1.45e-28 | 111 |
| MS.gene83996.t1 | MTR_2g086390 | 33.893 | 298 | 131 | 12 | 20 | 307 | 12 | 253 | 1.89e-28 | 111 |
| MS.gene83996.t1 | MTR_2g086340 | 36.066 | 305 | 138 | 12 | 17 | 307 | 23 | 284 | 5.99e-27 | 108 |
| MS.gene83996.t1 | MTR_5g088230 | 44.828 | 145 | 70 | 3 | 1 | 143 | 1 | 137 | 3.36e-24 | 99.4 |
| MS.gene83996.t1 | MTR_5g088230 | 58.333 | 60 | 24 | 1 | 249 | 308 | 179 | 237 | 2.78e-11 | 63.2 |
| MS.gene83996.t1 | MTR_5g088230 | 44.828 | 145 | 70 | 3 | 1 | 143 | 6 | 142 | 3.47e-24 | 99.4 |
| MS.gene83996.t1 | MTR_5g088230 | 58.333 | 60 | 24 | 1 | 249 | 308 | 184 | 242 | 2.57e-11 | 63.5 |
| MS.gene83996.t1 | MTR_7g104480 | 38.060 | 134 | 72 | 2 | 22 | 144 | 45 | 178 | 1.24e-19 | 89.0 |
| MS.gene83996.t1 | MTR_5g060990 | 26.974 | 304 | 172 | 8 | 16 | 286 | 12 | 298 | 8.85e-18 | 82.4 |
| MS.gene83996.t1 | MTR_7g015990 | 77.083 | 48 | 8 | 1 | 264 | 308 | 120 | 167 | 7.57e-14 | 69.3 |
| MS.gene83996.t1 | MTR_8g075130 | 43.689 | 103 | 40 | 3 | 220 | 308 | 54 | 152 | 5.89e-13 | 66.6 |
| MS.gene83996.t1 | MTR_5g022780 | 64.912 | 57 | 8 | 1 | 264 | 308 | 166 | 222 | 1.93e-12 | 66.2 |
| MS.gene83996.t1 | MTR_4g094390 | 53.226 | 62 | 28 | 1 | 247 | 308 | 114 | 174 | 7.03e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83996.t1 | AT3G56850 | 55.161 | 310 | 97 | 8 | 1 | 308 | 1 | 270 | 1.85e-91 | 274 |
| MS.gene83996.t1 | AT2G41070 | 46.753 | 308 | 89 | 9 | 1 | 307 | 1 | 234 | 1.86e-66 | 209 |
| MS.gene83996.t1 | AT2G41070 | 46.753 | 308 | 89 | 9 | 1 | 307 | 1 | 234 | 1.86e-66 | 209 |
| MS.gene83996.t1 | AT2G41070 | 46.753 | 308 | 89 | 9 | 1 | 307 | 1 | 234 | 1.86e-66 | 209 |
| MS.gene83996.t1 | AT2G41070 | 46.753 | 308 | 89 | 9 | 1 | 307 | 10 | 243 | 1.99e-66 | 209 |
| MS.gene83996.t1 | AT2G41070 | 46.753 | 308 | 89 | 9 | 1 | 307 | 1 | 234 | 2.15e-66 | 208 |
| MS.gene83996.t1 | AT1G49720 | 38.395 | 349 | 156 | 15 | 9 | 308 | 18 | 356 | 4.35e-45 | 158 |
| MS.gene83996.t1 | AT1G49720 | 38.109 | 349 | 157 | 15 | 9 | 308 | 18 | 356 | 4.50e-45 | 157 |
| MS.gene83996.t1 | AT1G49720 | 38.109 | 349 | 157 | 15 | 9 | 308 | 18 | 356 | 4.50e-45 | 157 |
| MS.gene83996.t1 | AT3G44460 | 36.893 | 309 | 126 | 10 | 15 | 306 | 34 | 290 | 3.80e-30 | 117 |
| MS.gene83996.t1 | AT3G19290 | 47.183 | 142 | 64 | 2 | 14 | 144 | 32 | 173 | 3.36e-28 | 112 |
| MS.gene83996.t1 | AT3G19290 | 47.183 | 142 | 64 | 2 | 14 | 144 | 32 | 173 | 4.19e-28 | 112 |
| MS.gene83996.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 4.37e-28 | 112 |
| MS.gene83996.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 5.28e-28 | 112 |
| MS.gene83996.t1 | AT3G19290 | 45.775 | 142 | 66 | 2 | 14 | 144 | 32 | 173 | 5.28e-28 | 112 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 2.80e-21 | 93.6 |
| MS.gene83996.t1 | AT1G45249 | 74.000 | 50 | 13 | 0 | 259 | 308 | 332 | 381 | 3.04e-16 | 79.0 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 36 | 192 | 2.86e-21 | 94.0 |
| MS.gene83996.t1 | AT1G45249 | 74.000 | 50 | 13 | 0 | 259 | 308 | 347 | 396 | 3.60e-16 | 79.0 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 36 | 192 | 2.86e-21 | 94.0 |
| MS.gene83996.t1 | AT1G45249 | 74.000 | 50 | 13 | 0 | 259 | 308 | 347 | 396 | 3.60e-16 | 79.0 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 3.71e-21 | 92.8 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 3.71e-21 | 92.8 |
| MS.gene83996.t1 | AT1G45249 | 43.373 | 166 | 65 | 7 | 16 | 161 | 21 | 177 | 3.73e-21 | 93.6 |
| MS.gene83996.t1 | AT1G45249 | 60.656 | 61 | 13 | 1 | 259 | 308 | 332 | 392 | 2.38e-13 | 70.5 |
| MS.gene83996.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 5.57e-21 | 92.8 |
| MS.gene83996.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 5.57e-21 | 92.8 |
| MS.gene83996.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 5.57e-21 | 92.8 |
| MS.gene83996.t1 | AT1G45249 | 46.429 | 140 | 57 | 5 | 16 | 144 | 21 | 153 | 5.57e-21 | 92.8 |
| MS.gene83996.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.24e-20 | 92.0 |
| MS.gene83996.t1 | AT4G34000 | 47.872 | 94 | 47 | 1 | 215 | 308 | 326 | 417 | 1.84e-17 | 82.8 |
| MS.gene83996.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.62e-20 | 91.7 |
| MS.gene83996.t1 | AT4G34000 | 47.872 | 94 | 47 | 1 | 215 | 308 | 326 | 417 | 2.56e-17 | 82.4 |
| MS.gene83996.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.62e-20 | 91.7 |
| MS.gene83996.t1 | AT4G34000 | 47.872 | 94 | 47 | 1 | 215 | 308 | 326 | 417 | 2.56e-17 | 82.4 |
| MS.gene83996.t1 | AT4G34000 | 38.690 | 168 | 63 | 6 | 13 | 144 | 24 | 187 | 1.62e-20 | 91.7 |
| MS.gene83996.t1 | AT4G34000 | 47.872 | 94 | 47 | 1 | 215 | 308 | 326 | 417 | 2.56e-17 | 82.4 |
| MS.gene83996.t1 | AT2G36270 | 70.690 | 58 | 16 | 1 | 249 | 306 | 342 | 398 | 2.95e-16 | 79.3 |
| MS.gene83996.t1 | AT2G36270 | 33.514 | 185 | 65 | 4 | 16 | 144 | 37 | 219 | 6.90e-16 | 78.2 |
| MS.gene83996.t1 | AT2G36270 | 70.690 | 58 | 16 | 1 | 249 | 306 | 342 | 398 | 3.16e-16 | 79.3 |
| MS.gene83996.t1 | AT2G36270 | 33.880 | 183 | 67 | 4 | 16 | 144 | 37 | 219 | 4.02e-16 | 79.0 |
| MS.gene83996.t1 | AT2G36270 | 70.690 | 58 | 16 | 1 | 249 | 306 | 342 | 398 | 3.16e-16 | 79.3 |
| MS.gene83996.t1 | AT2G36270 | 33.880 | 183 | 67 | 4 | 16 | 144 | 37 | 219 | 4.02e-16 | 79.0 |
| MS.gene83996.t1 | AT4G35900 | 58.209 | 67 | 26 | 1 | 242 | 308 | 195 | 259 | 1.48e-14 | 73.2 |
| MS.gene83996.t1 | AT5G42910 | 38.636 | 132 | 54 | 3 | 16 | 143 | 20 | 128 | 2.01e-14 | 73.6 |
| MS.gene83996.t1 | AT5G44080 | 31.019 | 216 | 85 | 9 | 98 | 308 | 120 | 276 | 1.91e-13 | 70.1 |
| MS.gene83996.t1 | AT2G17770 | 71.111 | 45 | 13 | 0 | 264 | 308 | 125 | 169 | 4.38e-13 | 67.4 |
| MS.gene83996.t1 | AT1G03970 | 62.000 | 50 | 19 | 0 | 259 | 308 | 183 | 232 | 5.32e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAAAAGATGAAATA+AGG | - | 43349:11103-11122 | MS.gene83996:CDS | 15.0% |
| !! | GTTATTATCAATAATATTCT+AGG | - | 43349:11375-11394 | MS.gene83996:CDS | 15.0% |
| !!! | AGAATATTATTGATAATAAC+TGG | + | 43349:11375-11394 | MS.gene83996:intergenic | 15.0% |
| !! | AAAAGAGGATGATAAAAAAT+AGG | - | 43349:11509-11528 | MS.gene83996:CDS | 20.0% |
| !! | AAAGAGGATGATAAAAAATA+GGG | - | 43349:11510-11529 | MS.gene83996:CDS | 20.0% |
| !! | CCTTCAAAAAAAAAAACTTA+GGG | + | 43349:11305-11324 | MS.gene83996:intergenic | 20.0% |
| !! | TCCTTCAAAAAAAAAAACTT+AGG | + | 43349:11306-11325 | MS.gene83996:intergenic | 20.0% |
| !!! | AGCTTTATACAAAAGATTAA+GGG | + | 43349:11336-11355 | MS.gene83996:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | + | 43349:11044-11063 | MS.gene83996:intergenic | 20.0% |
| !!! | TGAATCTTTTCATAACAATA+AGG | - | 43349:10649-10668 | MS.gene83996:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | + | 43349:11043-11062 | MS.gene83996:intergenic | 20.0% |
| ! | AGACTCAAACCTAAATAAAA+GGG | + | 43349:11014-11033 | MS.gene83996:intergenic | 25.0% |
| ! | TAGACTCAAACCTAAATAAA+AGG | + | 43349:11015-11034 | MS.gene83996:intergenic | 25.0% |
| ! | TCAAACCAAAAAAAACAAAC+AGG | + | 43349:11613-11632 | MS.gene83996:intergenic | 25.0% |
| ! | TTTCATAACAATAAGGATGA+TGG | - | 43349:10656-10675 | MS.gene83996:intron | 25.0% |
| !! | AAAACCATCTTGGTAATTTA+GGG | - | 43349:10312-10331 | MS.gene83996:intron | 25.0% |
| !! | CAGCTTTATACAAAAGATTA+AGG | + | 43349:11337-11356 | MS.gene83996:intergenic | 25.0% |
| !! | TTACTTTATTTCCTACTACT+AGG | - | 43349:10960-10979 | MS.gene83996:intron | 25.0% |
| !!! | CCCTAAGTTTTTTTTTTTGA+AGG | - | 43349:11302-11321 | MS.gene83996:CDS | 25.0% |
| AACATACAGCATAATCAACT+TGG | - | 43349:10443-10462 | MS.gene83996:CDS | 30.0% | |
| ACCTAAATAAAAGGGAAATC+AGG | + | 43349:11006-11025 | MS.gene83996:intergenic | 30.0% | |
| ATATCGCCATCTTCTTTAAT+GGG | - | 43349:10878-10897 | MS.gene83996:intron | 30.0% | |
| CAAAGACTTTACCTTTATCT+AGG | - | 43349:10252-10271 | MS.gene83996:CDS | 30.0% | |
| CAGCTTATATGAAAACAGAA+TGG | + | 43349:11129-11148 | MS.gene83996:intergenic | 30.0% | |
| GTTTAGAAGAGGAAAATGAA+AGG | - | 43349:11703-11722 | MS.gene83996:CDS | 30.0% | |
| TAGTAAGAAAACTGTTGATG+AGG | - | 43349:10505-10524 | MS.gene83996:CDS | 30.0% | |
| TTATCAGATACACAAACACT+AGG | - | 43349:11433-11452 | MS.gene83996:CDS | 30.0% | |
| TTTCTCTACTAAAATACCAG+AGG | + | 43349:11473-11492 | MS.gene83996:intergenic | 30.0% | |
| ! | AAGCATTTGTGAGAATGTTT+TGG | + | 43349:11242-11261 | MS.gene83996:intergenic | 30.0% |
| ! | CAAAACCATCTTGGTAATTT+AGG | - | 43349:10311-10330 | MS.gene83996:intron | 30.0% |
| !! | TCCTGATTTCCCTTTTATTT+AGG | - | 43349:11002-11021 | MS.gene83996:intron | 30.0% |
| !!! | GAAGTCCTGTTTGTTTTTTT+TGG | - | 43349:11605-11624 | MS.gene83996:CDS | 30.0% |
| AAAGATCCTGACCTAGATAA+AGG | + | 43349:10266-10285 | MS.gene83996:intergenic | 35.0% | |
| ACAAACACTAGGTCGAAAAA+GGG | - | 43349:11444-11463 | MS.gene83996:CDS | 35.0% | |
| ACTTTACCTTTATCTAGGTC+AGG | - | 43349:10257-10276 | MS.gene83996:CDS | 35.0% | |
| GATATCGCCATCTTCTTTAA+TGG | - | 43349:10877-10896 | MS.gene83996:intron | 35.0% | |
| GATGAAGTTCAAAACCATCT+TGG | - | 43349:10302-10321 | MS.gene83996:intron | 35.0% | |
| GGGAAATCAGGAAAAGAATA+AGG | + | 43349:10994-11013 | MS.gene83996:intergenic | 35.0% | |
| GTAGTACCCATTAAAGAAGA+TGG | + | 43349:10887-10906 | MS.gene83996:intergenic | 35.0% | |
| GTTTCCCTAAATTACCAAGA+TGG | + | 43349:10319-10338 | MS.gene83996:intergenic | 35.0% | |
| TAAAGTTTCGCGTTTAGAAG+AGG | - | 43349:11692-11711 | MS.gene83996:CDS | 35.0% | |
| TATAAGCCTGCACATTTCAT+TGG | + | 43349:11656-11675 | MS.gene83996:intergenic | 35.0% | |
| TCAAGATTCATACTTCCAAG+TGG | + | 43349:10341-10360 | MS.gene83996:intergenic | 35.0% | |
| TCTTCATTGGATGCAATATC+CGG | - | 43349:10736-10755 | MS.gene83996:intron | 35.0% | |
| TGAGTCTATGTATCCCTATT+TGG | - | 43349:11027-11046 | MS.gene83996:intron | 35.0% | |
| TGCACATTTCATTGGCATAT+GGG | + | 43349:11648-11667 | MS.gene83996:intergenic | 35.0% | |
| ! | AACTTGGTTTGAGTTCACAA+GGG | - | 43349:10459-10478 | MS.gene83996:CDS | 35.0% |
| ! | CATAACAATAAGGATGATGG+TGG | - | 43349:10659-10678 | MS.gene83996:intron | 35.0% |
| ! | GTATGAAAAGCATATGATGC+CGG | - | 43349:10787-10806 | MS.gene83996:intron | 35.0% |
| ! | GTTATACTCTTTTCTCTGTG+AGG | - | 43349:11565-11584 | MS.gene83996:CDS | 35.0% |
| ! | TATGAAAAGCATATGATGCC+GGG | - | 43349:10788-10807 | MS.gene83996:intron | 35.0% |
| ! | TCTGATAATGTACCTGTTGA+AGG | + | 43349:11421-11440 | MS.gene83996:intergenic | 35.0% |
| ! | TTGATTCGAATGAGGATTCT+CGG | - | 43349:10693-10712 | MS.gene83996:intron | 35.0% |
| !!! | GTTTTTTTTGGTTTGACACG+AGG | - | 43349:11617-11636 | MS.gene83996:CDS | 35.0% |
| AACCTGAAAAGGCTGTTGAA+TGG | + | 43349:10831-10850 | MS.gene83996:intergenic | 40.0% | |
| AAGATATGCAAGGGAAGAAG+AGG | - | 43349:10534-10553 | MS.gene83996:CDS | 40.0% | |
| AGATATGCAAGGGAAGAAGA+GGG | - | 43349:10535-10554 | MS.gene83996:CDS | 40.0% | |
| AGGAACTTGATCCTAGTAGT+AGG | + | 43349:10974-10993 | MS.gene83996:intergenic | 40.0% | |
| AGGTGTGGAAAGATATGCAA+GGG | - | 43349:10525-10544 | MS.gene83996:CDS | 40.0% | |
| CACAAACACTAGGTCGAAAA+AGG | - | 43349:11443-11462 | MS.gene83996:CDS | 40.0% | |
| CATATGCCAATGAAATGTGC+AGG | - | 43349:11647-11666 | MS.gene83996:CDS | 40.0% | |
| CGTGAAAAACAACAGACACT+TGG | - | 43349:10581-10600 | MS.gene83996:intron | 40.0% | |
| CTGCACATTTCATTGGCATA+TGG | + | 43349:11649-11668 | MS.gene83996:intergenic | 40.0% | |
| GGTAATTTAGGGAAACCACT+TGG | - | 43349:10323-10342 | MS.gene83996:intron | 40.0% | |
| TAATGTACCTGTTGAAGGTG+TGG | + | 43349:11416-11435 | MS.gene83996:intergenic | 40.0% | |
| TAGTAGAGAAAACTGTCGAG+AGG | - | 43349:11482-11501 | MS.gene83996:CDS | 40.0% | |
| TGCATCCAAAACTTGATTCC+CGG | + | 43349:10855-10874 | MS.gene83996:intergenic | 40.0% | |
| TTTCGCAACATGGTCTTCAT+TGG | - | 43349:10723-10742 | MS.gene83996:intron | 40.0% | |
| ! | AATGTACCTGTTGAAGGTGT+GGG | + | 43349:11415-11434 | MS.gene83996:intergenic | 40.0% |
| ! | AGAAAACTGTTGATGAGGTG+TGG | - | 43349:10510-10529 | MS.gene83996:CDS | 40.0% |
| ! | ATGAGTTGCTTAAGAGTGTG+TGG | - | 43349:10360-10379 | MS.gene83996:intron | 40.0% |
| ! | CAACTTGGTTTGAGTTCACA+AGG | - | 43349:10458-10477 | MS.gene83996:CDS | 40.0% |
| ! | CAAGGGAGTTTAACTTTGTC+TGG | - | 43349:10476-10495 | MS.gene83996:CDS | 40.0% |
| ! | GATGACTTTGGAGGATTTCT+TGG | - | 43349:10607-10626 | MS.gene83996:intron | 40.0% |
| !! | AGGATGATGGTGGTTTGTTA+AGG | - | 43349:10669-10688 | MS.gene83996:intron | 40.0% |
| !! | GGATGATGGTGGTTTGTTAA+GGG | - | 43349:10670-10689 | MS.gene83996:intron | 40.0% |
| !! | GTTAAGGGTTGATTCGAATG+AGG | - | 43349:10685-10704 | MS.gene83996:intron | 40.0% |
| !!! | GCTGCTTTTATTAGCTATCC+TGG | - | 43349:11152-11171 | MS.gene83996:CDS | 40.0% |
| AAAACTCCCACACCTTCAAC+AGG | - | 43349:11406-11425 | MS.gene83996:CDS | 45.0% | |
| CATACTTCAACAAGCTCTCC+AGG | + | 43349:11173-11192 | MS.gene83996:intergenic | 45.0% | |
| CGGCATAATGTTTCGCAACA+TGG | - | 43349:10713-10732 | MS.gene83996:intron | 45.0% | |
| GAGGATTTCTTGGTGAAAGC+TGG | - | 43349:10617-10636 | MS.gene83996:intron | 45.0% | |
| GAGGTGTGGAAAGATATGCA+AGG | - | 43349:10524-10543 | MS.gene83996:CDS | 45.0% | |
| GATATGCAAGGGAAGAAGAG+GGG | - | 43349:10536-10555 | MS.gene83996:CDS | 45.0% | |
| GCAGGCTTATACACAAGAAC+TGG | - | 43349:11665-11684 | MS.gene83996:CDS | 45.0% | |
| GTTGTTGCTGCTGAACAGAA+TGG | + | 43349:10763-10782 | MS.gene83996:intergenic | 45.0% | |
| TAGAGAAAACTGTCGAGAGG+AGG | - | 43349:11485-11504 | MS.gene83996:CDS | 45.0% | |
| TTGGTGAAAGCTGGAGTTGT+TGG | - | 43349:10626-10645 | MS.gene83996:intron | 45.0% | |
| ! | ACTCTTTTCTCTGTGAGGTG+TGG | - | 43349:11570-11589 | MS.gene83996:CDS | 45.0% |
| ! | ACTTGGTGAGATGACTTTGG+AGG | - | 43349:10598-10617 | MS.gene83996:intron | 45.0% |
| ! | GACACTTGGTGAGATGACTT+TGG | - | 43349:10595-10614 | MS.gene83996:intron | 45.0% |
| ! | TGCCATTCAACAGCCTTTTC+AGG | - | 43349:10826-10845 | MS.gene83996:intron | 45.0% |
| !! | GAAGAAGAGGGGTGTTGATA+GGG | - | 43349:10547-10566 | MS.gene83996:intron | 45.0% |
| TCGTTCACGAGCAAGAAGAC+AGG | - | 43349:11543-11562 | MS.gene83996:CDS | 50.0% | |
| TGATTCCCGGCAACCTGAAA+AGG | + | 43349:10842-10861 | MS.gene83996:intergenic | 50.0% | |
| TGCTGCTGAACAGAATGGAC+CGG | + | 43349:10758-10777 | MS.gene83996:intergenic | 50.0% | |
| TGTTGAAGCTGGCGAGGTTT+CGG | - | 43349:10385-10404 | MS.gene83996:intron | 50.0% | |
| ! | GCATATGATGCCGGGTTTTG+CGG | - | 43349:10796-10815 | MS.gene83996:intron | 50.0% |
| ! | GGTTGCCGGGAATCAAGTTT+TGG | - | 43349:10847-10866 | MS.gene83996:intron | 50.0% |
| !! | AGAGGGGTGTTGATAGGGAT+AGG | - | 43349:10552-10571 | MS.gene83996:intron | 50.0% |
| !! | AGTGTGTGGAGTGTTGAAGC+TGG | - | 43349:10374-10393 | MS.gene83996:intron | 50.0% |
| !! | GGAAGAAGAGGGGTGTTGAT+AGG | - | 43349:10546-10565 | MS.gene83996:intron | 50.0% |
| !!! | AACAGCCTTTTCAGGTTGCC+GGG | - | 43349:10834-10853 | MS.gene83996:intron | 50.0% |
| !!! | CAACAGCCTTTTCAGGTTGC+CGG | - | 43349:10833-10852 | MS.gene83996:intron | 50.0% |
| AGTGATGTTGCTGCTGCTGC+TGG | - | 43349:10419-10438 | MS.gene83996:CDS | 55.0% | |
| CTGTCGAGAGGAGGCAAAAG+AGG | - | 43349:11494-11513 | MS.gene83996:CDS | 55.0% | |
| GCATGAACTGCCGCAAAACC+CGG | + | 43349:10809-10828 | MS.gene83996:intergenic | 55.0% | |
| GCTGGCGAGGTTTCGGATTT+CGG | - | 43349:10392-10411 | MS.gene83996:intron | 55.0% | |
| GGTCGAAAAAGGGTTGCCTC+TGG | - | 43349:11454-11473 | MS.gene83996:CDS | 55.0% | |
| GGCGAGGTTTCGGATTTCGG+CGG | - | 43349:10395-10414 | MS.gene83996:intron | 60.0% | |
| !! | GTGGAGTGTTGAAGCTGGCG+AGG | - | 43349:10379-10398 | MS.gene83996:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43349 | gene | 10221 | 11740 | 10221 | ID=MS.gene83996 |
| 43349 | mRNA | 10221 | 11740 | 10221 | ID=MS.gene83996.t1;Parent=MS.gene83996 |
| 43349 | exon | 11054 | 11740 | 11054 | ID=MS.gene83996.t1.exon1;Parent=MS.gene83996.t1 |
| 43349 | CDS | 11054 | 11740 | 11054 | ID=cds.MS.gene83996.t1;Parent=MS.gene83996.t1 |
| 43349 | exon | 10397 | 10564 | 10397 | ID=MS.gene83996.t1.exon2;Parent=MS.gene83996.t1 |
| 43349 | CDS | 10397 | 10564 | 10397 | ID=cds.MS.gene83996.t1;Parent=MS.gene83996.t1 |
| 43349 | exon | 10221 | 10292 | 10221 | ID=MS.gene83996.t1.exon3;Parent=MS.gene83996.t1 |
| 43349 | CDS | 10221 | 10292 | 10221 | ID=cds.MS.gene83996.t1;Parent=MS.gene83996.t1 |
| Gene Sequence |
| Protein sequence |
