AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068056

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068056.t1 MTR_7g088090 98.442 321 4 1 1 321 1 320 0.0 646
MS.gene068056.t1 MTR_6g026800 60.606 330 112 6 1 321 1 321 4.20e-118 343
MS.gene068056.t1 MTR_8g043960 51.125 311 128 9 15 321 23 313 7.63e-87 263
MS.gene068056.t1 MTR_3g010660 48.910 321 127 10 16 319 20 320 1.26e-85 261
MS.gene068056.t1 MTR_2g086390 33.110 299 133 10 19 299 11 260 5.97e-31 118
MS.gene068056.t1 MTR_2g086390 32.423 293 132 9 19 294 11 254 3.01e-30 116
MS.gene068056.t1 MTR_4g085910 44.186 129 67 2 16 141 18 144 2.35e-26 107
MS.gene068056.t1 MTR_4g085910 63.380 71 22 1 223 293 278 344 7.95e-17 80.9
MS.gene068056.t1 MTR_2g086340 34.899 298 139 11 17 294 23 285 8.10e-26 105
MS.gene068056.t1 MTR_3g101780 39.333 150 76 3 2 146 14 153 4.42e-23 99.4
MS.gene068056.t1 MTR_3g101780 67.213 61 19 1 236 296 339 398 7.84e-17 80.9
MS.gene068056.t1 MTR_5g060990 30.744 309 158 12 16 284 12 304 9.84e-23 96.7
MS.gene068056.t1 MTR_5g088230 45.600 125 56 3 16 134 17 135 5.51e-22 93.6
MS.gene068056.t1 MTR_5g088230 48.092 131 59 3 194 319 136 262 8.29e-20 87.4
MS.gene068056.t1 MTR_5g088230 45.600 125 56 3 16 134 22 140 5.85e-22 93.6
MS.gene068056.t1 MTR_5g088230 48.092 131 59 3 194 319 141 267 9.27e-20 87.4
MS.gene068056.t1 MTR_7g104480 34.328 134 70 3 22 137 45 178 2.44e-15 76.6
MS.gene068056.t1 MTR_7g015990 76.596 47 8 1 250 293 120 166 6.31e-13 67.0
MS.gene068056.t1 MTR_8g075130 62.963 54 17 1 243 293 98 151 2.10e-12 65.1
MS.gene068056.t1 MTR_4g094390 60.714 56 22 0 237 292 117 172 9.49e-12 63.5
MS.gene068056.t1 MTR_5g022780 64.286 56 8 1 250 293 166 221 1.42e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068056.t1 AT3G56850 55.623 329 106 10 1 321 1 297 2.19e-101 300
MS.gene068056.t1 AT2G41070 48.012 327 99 10 1 321 1 262 4.39e-83 252
MS.gene068056.t1 AT2G41070 48.012 327 99 10 1 321 1 262 4.39e-83 252
MS.gene068056.t1 AT2G41070 48.012 327 99 10 1 321 1 262 4.39e-83 252
MS.gene068056.t1 AT2G41070 48.012 327 99 10 1 321 10 271 5.51e-83 252
MS.gene068056.t1 AT2G41070 46.333 300 90 10 1 294 1 235 1.04e-67 212
MS.gene068056.t1 AT3G44460 34.471 293 147 8 16 296 35 294 5.55e-26 105
MS.gene068056.t1 AT3G19290 43.571 140 61 3 16 137 34 173 1.09e-23 100
MS.gene068056.t1 AT3G19290 65.306 49 17 0 245 293 347 395 1.74e-13 71.2
MS.gene068056.t1 AT3G19290 43.571 140 61 3 16 137 34 173 1.47e-23 100
MS.gene068056.t1 AT3G19290 43.571 140 61 3 16 137 34 173 1.80e-23 100
MS.gene068056.t1 AT3G19290 65.306 49 17 0 245 293 347 395 2.73e-13 70.5
MS.gene068056.t1 AT3G19290 43.571 140 61 3 16 137 34 173 1.97e-23 100
MS.gene068056.t1 AT3G19290 65.306 49 17 0 245 293 347 395 2.80e-13 70.5
MS.gene068056.t1 AT3G19290 43.571 140 61 3 16 137 34 173 1.97e-23 100
MS.gene068056.t1 AT3G19290 65.306 49 17 0 245 293 347 395 2.80e-13 70.5
MS.gene068056.t1 AT1G45249 53.153 111 37 5 218 320 327 430 4.91e-20 90.5
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 36 168 6.55e-19 87.0
MS.gene068056.t1 AT1G45249 53.153 111 37 5 218 320 327 430 4.91e-20 90.5
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 36 168 6.55e-19 87.0
MS.gene068056.t1 AT1G45249 53.153 111 37 5 218 320 312 415 5.27e-20 90.1
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 6.97e-19 87.0
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 7.27e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 7.27e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 8.86e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 8.86e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 8.86e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 8.86e-19 86.7
MS.gene068056.t1 AT1G45249 42.553 141 54 6 16 137 21 153 9.48e-19 86.7
MS.gene068056.t1 AT1G45249 48.361 122 37 6 218 320 312 426 3.60e-17 82.0
MS.gene068056.t1 AT2G36270 70.149 67 18 2 234 299 341 406 3.22e-18 85.1
MS.gene068056.t1 AT2G36270 70.149 67 18 2 234 299 341 406 3.41e-18 85.1
MS.gene068056.t1 AT2G36270 70.149 67 18 2 234 299 341 406 3.41e-18 85.1
MS.gene068056.t1 AT4G34000 48.113 106 44 3 198 293 312 416 1.10e-17 83.6
MS.gene068056.t1 AT4G34000 34.132 167 59 5 16 137 27 187 2.64e-17 82.4
MS.gene068056.t1 AT4G34000 48.113 106 44 3 198 293 312 416 1.43e-17 83.6
MS.gene068056.t1 AT4G34000 34.132 167 59 5 16 137 27 187 2.74e-17 82.4
MS.gene068056.t1 AT4G34000 48.113 106 44 3 198 293 312 416 1.43e-17 83.6
MS.gene068056.t1 AT4G34000 34.132 167 59 5 16 137 27 187 2.74e-17 82.4
MS.gene068056.t1 AT4G34000 48.113 106 44 3 198 293 312 416 1.43e-17 83.6
MS.gene068056.t1 AT4G34000 34.132 167 59 5 16 137 27 187 2.74e-17 82.4
MS.gene068056.t1 AT4G35900 56.579 76 32 1 246 321 211 285 3.20e-17 80.9
MS.gene068056.t1 AT2G17770 55.556 72 31 1 250 321 125 195 5.91e-15 72.8
MS.gene068056.t1 AT1G49720 52.632 95 35 4 235 320 298 391 1.06e-14 74.7
MS.gene068056.t1 AT1G49720 52.632 95 35 4 235 320 298 391 1.06e-14 74.7
MS.gene068056.t1 AT1G49720 64.407 59 20 1 235 293 298 355 2.03e-13 70.9
MS.gene068056.t1 AT1G03970 29.665 209 82 6 96 298 85 234 5.34e-12 65.5
MS.gene068056.t1 AT5G44080 47.674 86 33 2 245 318 227 312 3.11e-11 63.9
MS.gene068056.t1 AT5G42910 32.031 128 57 3 15 133 19 125 4.97e-11 63.5
MS.gene068056.t1 AT5G42910 42.991 107 51 5 219 318 264 367 7.50e-11 62.8

Find 82 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCAGCTTGGAAATTT+AGG 0.083769 7.2:+20615172 MS.gene068056:CDS
CAGCATGGTCAACTGGCTTC+TGG 0.131375 7.2:+20615301 MS.gene068056:CDS
ATGAATCCATTGACACTTTC+TGG 0.149546 7.2:+20615331 MS.gene068056:CDS
CAAGGTTCTGGGTTGGATTC+TGG 0.152919 7.2:+20615259 MS.gene068056:CDS
TCTGAAGCTGCTCAAGGTTC+TGG 0.221535 7.2:+20615247 MS.gene068056:CDS
AAAATCAGCTTGGAAATTTA+GGG 0.258433 7.2:+20615173 MS.gene068056:CDS
TTTGTCACCGTCTTCTTTAA+TGG 0.283520 7.2:+20615735 MS.gene068056:CDS
TGTGGTTCAACAGCCTGTTT+TGG 0.318849 7.2:+20615684 MS.gene068056:CDS
AGAAAACTATTGATGAGGTT+TGG 0.366361 7.2:+20615365 MS.gene068056:CDS
ACAGAAGAAGAGTGCTAGTC+AGG 0.399470 7.2:+20615399 MS.gene068056:CDS
GTTCTGCGAAGCTGATGCTT+AGG 0.411723 7.2:-20617759 None:intergenic
GGGTCTGGTGGTGGCATACT+TGG 0.413639 7.2:-20617738 None:intergenic
ATCTAGATTCATGCTTCCTA+AGG 0.414294 7.2:-20615200 None:intergenic
CACAAACTCAAGGTAGGAAA+AGG 0.414409 7.2:+20615773 MS.gene068056:CDS
TCGGTCGCGGGCTAGAAAAC+AGG 0.419550 7.2:+20615873 MS.gene068056:CDS
CTGAAGCTGCTCAAGGTTCT+GGG 0.427919 7.2:+20615248 MS.gene068056:CDS
AGAACAAAAGACTGGAACTT+TGG 0.437900 7.2:+20615108 MS.gene068056:CDS
GTGTATCCTGCATCCAAAAC+AGG 0.438961 7.2:-20615697 None:intergenic
TTACATGCAGCATGGTCAAC+TGG 0.446389 7.2:+20615294 MS.gene068056:CDS
ATGAGTTGCTGAAGAGTTTG+TGG 0.448987 7.2:+20615221 MS.gene068056:CDS
GGGAATCTGCAGCTCGGTCG+CGG 0.454529 7.2:+20615860 MS.gene068056:CDS
AGCATGGTCAACTGGCTTCT+GGG 0.456125 7.2:+20615302 MS.gene068056:CDS
TTTGCAATAAAGTCTTCAAA+GGG 0.467582 7.2:-20617793 None:intergenic
ATACATCCCAGCATGGTCAT+TGG 0.471305 7.2:+20615557 MS.gene068056:CDS
AGCTGCTCAAGGTTCTGGGT+TGG 0.476833 7.2:+20615252 MS.gene068056:CDS
TTCTGCGAAGCTGATGCTTA+GGG 0.478401 7.2:-20617758 None:intergenic
CTGTGGAGAGGAGGCAGAAG+AGG 0.493448 7.2:+20615824 MS.gene068056:CDS
ACTTGGTGAGATGACTTTGG+AGG 0.493788 7.2:+20615438 MS.gene068056:CDS
TGATGCTGATGTTGTTGTTG+TGG 0.499071 7.2:-20615610 None:intergenic
AGTGAGGATAATGCTATGTC+AGG 0.499581 7.2:+20615502 MS.gene068056:CDS
GAGGATTTCTTGATGAAAGC+TGG 0.506897 7.2:+20615457 MS.gene068056:CDS
GGAAATTTAGGGAAACCCTT+AGG 0.509333 7.2:+20615184 MS.gene068056:CDS
AGATCACCAGAAAGTGTCAA+TGG 0.510245 7.2:-20615337 None:intergenic
TGTTGTGGTTGCTGCACTGA+AGG 0.512843 7.2:-20615595 None:intergenic
GATGAGGTTCAAAATCAGCT+TGG 0.519734 7.2:+20615163 MS.gene068056:CDS
CATCAGAATAATATGATGAC+TGG 0.520032 7.2:+20615637 MS.gene068056:CDS
GGAATCTGCAGCTCGGTCGC+GGG 0.521215 7.2:+20615861 MS.gene068056:CDS
AAGGGTTGCCTCTGGTGTTG+TGG 0.526242 7.2:+20615792 MS.gene068056:CDS
GGTAGGAAAAGGGTTGCCTC+TGG 0.527641 7.2:+20615784 MS.gene068056:CDS
TACACTTGGTGAGATGACTT+TGG 0.528431 7.2:+20615435 MS.gene068056:CDS
CGAAGCTGATGCTTAGGGTC+TGG 0.529237 7.2:-20617753 None:intergenic
GTTGTGGTTGCTGCACTGAA+GGG 0.529499 7.2:-20615594 None:intergenic
TGGACATCTGAAGCTGCTCA+AGG 0.541485 7.2:+20615241 MS.gene068056:CDS
ACAGGCTTACACACAAGAGC+TGG 0.542704 7.2:+20615989 MS.gene068056:intron
ACAAACTCAAGGTAGGAAAA+GGG 0.545104 7.2:+20615774 MS.gene068056:CDS
AGAAGAGTGCTAGTCAGGAT+AGG 0.552109 7.2:+20615404 MS.gene068056:CDS
AAAAGACTGGAACTTTGGCT+AGG 0.557530 7.2:+20615113 MS.gene068056:CDS
CAGATACACAAACTCAAGGT+AGG 0.558085 7.2:+20615767 MS.gene068056:CDS
GCAATCCAAGAACAAAAGAC+TGG 0.559028 7.2:+20615100 MS.gene068056:CDS
TGATGCTTAGGGTCTGGTGG+TGG 0.567579 7.2:-20617747 None:intergenic
GTACAATCTCACATTTGATG+AGG 0.569368 7.2:+20615147 MS.gene068056:CDS
TCTAGATTCATGCTTCCTAA+GGG 0.569459 7.2:-20615199 None:intergenic
TTGGATTCTGGAACCACTGA+TGG 0.570371 7.2:+20615271 MS.gene068056:CDS
GTTGCTGCACTGAAGGGACT+TGG 0.573952 7.2:-20615588 None:intergenic
TAGTAAGAAAACTATTGATG+AGG 0.581872 7.2:+20615360 MS.gene068056:CDS
ACTGCATCCAATGACCATGC+TGG 0.582214 7.2:-20615564 None:intergenic
ACTTAGAAGAAGAGAATGAA+AGG 0.584805 7.2:+20616027 MS.gene068056:CDS
AGGATAATGCTATGTCAGGA+AGG 0.586500 7.2:+20615506 MS.gene068056:CDS
CACTGAATCATTTCCTAGTG+AGG 0.587073 7.2:+20615486 MS.gene068056:CDS
AGCTGATGCTTAGGGTCTGG+TGG 0.587120 7.2:-20617750 None:intergenic
AAAGACTGGAACTTTGGCTA+GGG 0.596011 7.2:+20615114 MS.gene068056:CDS
CTGCATCCAATGACCATGCT+GGG 0.608106 7.2:-20615563 None:intergenic
ACTGGAACTTTGGCTAGGGA+AGG 0.612277 7.2:+20615118 MS.gene068056:CDS
TTGAGAAAACTGTGGAGAGG+AGG 0.618222 7.2:+20615815 MS.gene068056:CDS
AAAATAGGGAATCTGCAGCT+CGG 0.624873 7.2:+20615854 MS.gene068056:CDS
TTGAAAATGGGATCTCATGG+AGG 0.632717 7.2:+20615076 None:intergenic
ATGCTGCATGTAACCATCAG+TGG 0.635290 7.2:-20615284 None:intergenic
GATAGGAGAACAGCTACACT+TGG 0.637974 7.2:+20615421 MS.gene068056:CDS
TCATCAGATACACAAACTCA+AGG 0.638560 7.2:+20615763 MS.gene068056:CDS
AGGTTATATGACTAGTCATG+TGG 0.640844 7.2:+20615666 MS.gene068056:CDS
GAAGTAGCCATTAAAGAAGA+CGG 0.641922 7.2:-20615742 None:intergenic
TTTCTTGATGAAAGCTGGTG+TGG 0.647086 7.2:+20615462 MS.gene068056:CDS
CTCACTAGGAAATGATTCAG+TGG 0.653229 7.2:-20615485 None:intergenic
TTTCTCAACCACAACACCAG+AGG 0.653421 7.2:-20615800 None:intergenic
TGCAGGATACACTGAAGCAA+TGG 0.653801 7.2:+20615708 MS.gene068056:CDS
GGATAATGCTATGTCAGGAA+GGG 0.659996 7.2:+20615507 MS.gene068056:CDS
GACATAGCATTATCCTCACT+AGG 0.666638 7.2:-20615499 None:intergenic
TGGTTGAGAAAACTGTGGAG+AGG 0.682616 7.2:+20615812 MS.gene068056:CDS
ACTGATGGTTACATGCAGCA+TGG 0.688917 7.2:+20615286 MS.gene068056:CDS
CAACAAAATACATCCCAGCA+TGG 0.693166 7.2:+20615550 MS.gene068056:CDS
TTGCAATAAAGTCTTCAAAG+GGG 0.695239 7.2:-20617792 None:intergenic
TGTTGTGGTTGAGAAAACTG+TGG 0.749971 7.2:+20615807 MS.gene068056:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATAATAACTAACCA+GGG - chr7.2:20616791-20616810 None:intergenic 15.0%
!! TCTATATAATAAAAATGATG+TGG + chr7.2:20617295-20617314 MS.gene068056:intron 15.0%
!!! AGTTTTCATTATTTCAAAAT+TGG + chr7.2:20616884-20616903 MS.gene068056:intron 15.0%
!!! ATTTTGTTAAATCATATAGA+AGG + chr7.2:20616585-20616604 MS.gene068056:intron 15.0%
!!! GTTTTCATTATTTCAAAATT+GGG + chr7.2:20616885-20616904 MS.gene068056:intron 15.0%
!! AAAACTTCAAGAAAGAATAA+AGG - chr7.2:20616301-20616320 None:intergenic 20.0%
!! ATTCCTAATTGAATTACTTA+AGG - chr7.2:20617605-20617624 None:intergenic 20.0%
!! CAAAAATATGATTCAATAAC+TGG + chr7.2:20616248-20616267 MS.gene068056:intron 20.0%
!! CAATATTATAATAACTAACC+AGG - chr7.2:20616792-20616811 None:intergenic 20.0%
!! TATGATTTAACAAAATTGAC+TGG - chr7.2:20616581-20616600 None:intergenic 20.0%
!!! TAAATCATATAGAAGGTTTT+TGG + chr7.2:20616592-20616611 MS.gene068056:intron 20.0%
!!! TATATAGATGTTTTCAGAAA+TGG - chr7.2:20617283-20617302 None:intergenic 20.0%
!!! TTTTTTTTGTTGAGAATTTG+TGG + chr7.2:20617206-20617225 MS.gene068056:intron 20.0%
! AAAATCAGCTTGGAAATTTA+GGG + chr7.2:20615173-20615192 MS.gene068056:CDS 25.0%
! AAACAGATCATATAGCAAAA+AGG - chr7.2:20617358-20617377 None:intergenic 25.0%
! AAATCAGAGATAAATGATCA+AGG - chr7.2:20617497-20617516 None:intergenic 25.0%
! AAGAAATAGAATGTTTACAC+TGG + chr7.2:20616216-20616235 MS.gene068056:intron 25.0%
! AATAATAACGCTAACTGAAA+CGG - chr7.2:20616278-20616297 None:intergenic 25.0%
! AGAAGAGGATGATTAAAAAT+AGG + chr7.2:20615839-20615858 MS.gene068056:CDS 25.0%
! ATATTAGCATTGCAAAACAA+TGG - chr7.2:20616464-20616483 None:intergenic 25.0%
! ATGACATATATTTGTGTGTA+TGG + chr7.2:20615957-20615976 MS.gene068056:intron 25.0%
! ATGTCACAATAAAAGCTAAA+TGG - chr7.2:20616695-20616714 None:intergenic 25.0%
! CAAAATAGAGATTCATGTTA+AGG - chr7.2:20616327-20616346 None:intergenic 25.0%
! CAACCTTAAGTAATTCAATT+AGG + chr7.2:20617599-20617618 MS.gene068056:intron 25.0%
! CAGGAAAGGATAAATATTAA+TGG - chr7.2:20617090-20617109 None:intergenic 25.0%
! GAAGAGGATGATTAAAAATA+GGG + chr7.2:20615840-20615859 MS.gene068056:CDS 25.0%
! TAGTAAGAAAACTATTGATG+AGG + chr7.2:20615360-20615379 MS.gene068056:CDS 25.0%
!!! TGACTTTGTTTTTCTAAAGT+TGG + chr7.2:20617012-20617031 MS.gene068056:intron 25.0%
AACAATGTATGAAGTAGTAC+AGG - chr7.2:20616863-20616882 None:intergenic 30.0%
ACTTAGAAGAAGAGAATGAA+AGG + chr7.2:20616027-20616046 MS.gene068056:CDS 30.0%
AGAAAACTATTGATGAGGTT+TGG + chr7.2:20615365-20615384 MS.gene068056:CDS 30.0%
CAAAATCAGCTTGGAAATTT+AGG + chr7.2:20615172-20615191 MS.gene068056:CDS 30.0%
CATCAGAATAATATGATGAC+TGG + chr7.2:20615637-20615656 MS.gene068056:CDS 30.0%
CTATACTTTATTCCTTTGTC+TGG + chr7.2:20616095-20616114 MS.gene068056:intron 30.0%
GGTTGAAATGTTAGTTAATG+AGG + chr7.2:20616169-20616188 MS.gene068056:intron 30.0%
TAGTGCCAAAACAAGAAATT+AGG - chr7.2:20616925-20616944 None:intergenic 30.0%
TCCAAAACAATATTCAGGAA+AGG - chr7.2:20617104-20617123 None:intergenic 30.0%
! AAATGATGTGGTGATTTTGA+TGG + chr7.2:20617307-20617326 MS.gene068056:intron 30.0%
! ACAAGCTTTTGTTAGTTGAT+TGG + chr7.2:20617053-20617072 MS.gene068056:intron 30.0%
! CTGATCTCTAAAAAGTGATT+TGG + chr7.2:20617640-20617659 MS.gene068056:intron 30.0%
! TCCTTTCCTGAATATTGTTT+TGG + chr7.2:20617100-20617119 MS.gene068056:intron 30.0%
! TGTTTTCAGAAATGGAATGA+AGG - chr7.2:20617275-20617294 None:intergenic 30.0%
! TTTGCTTATTAAGCTTTGTG+TGG + chr7.2:20616343-20616362 MS.gene068056:intron 30.0%
!! TAAAGTAACCTTTGAAGTCA+TGG - chr7.2:20617153-20617172 None:intergenic 30.0%
!! TAGAAAGTACTCTGGTTTAA+TGG + chr7.2:20616982-20617001 MS.gene068056:intron 30.0%
!!! TTCCTGAATATTGTTTTGGA+GGG + chr7.2:20617104-20617123 MS.gene068056:intron 30.0%
!!! TTTCCTGAATATTGTTTTGG+AGG + chr7.2:20617103-20617122 MS.gene068056:intron 30.0%
AAGCTCAAACTCTATTCTCA+TGG - chr7.2:20617252-20617271 None:intergenic 35.0%
ACAAACTCAAGGTAGGAAAA+GGG + chr7.2:20615774-20615793 MS.gene068056:CDS 35.0%
ACTTCTGCATTGCATCAAAA+TGG - chr7.2:20616441-20616460 None:intergenic 35.0%
AGAACAAAAGACTGGAACTT+TGG + chr7.2:20615108-20615127 MS.gene068056:CDS 35.0%
AGATCAAATGAAAGCTATGC+AGG - chr7.2:20616764-20616783 None:intergenic 35.0%
ATCTAGATTCATGCTTCCTA+AGG - chr7.2:20615203-20615222 None:intergenic 35.0%
ATGAATCCATTGACACTTTC+TGG + chr7.2:20615331-20615350 MS.gene068056:CDS 35.0%
CGAAAGTTTATGAGATACTC+TGG + chr7.2:20616640-20616659 MS.gene068056:intron 35.0%
GAAGTAGCCATTAAAGAAGA+CGG - chr7.2:20615745-20615764 None:intergenic 35.0%
GAGTACTTTCTATCAAATGG+AGG - chr7.2:20616974-20616993 None:intergenic 35.0%
GTACAATCTCACATTTGATG+AGG + chr7.2:20615147-20615166 MS.gene068056:CDS 35.0%
GTAGTACAGGATTGAACAAA+AGG - chr7.2:20616850-20616869 None:intergenic 35.0%
TACCCTCCAAAACAATATTC+AGG - chr7.2:20617109-20617128 None:intergenic 35.0%
TAGTTAATGAGGACTTCAAC+TGG + chr7.2:20616180-20616199 MS.gene068056:intron 35.0%
TCATCAGATACACAAACTCA+AGG + chr7.2:20615763-20615782 MS.gene068056:CDS 35.0%
TCTAGATTCATGCTTCCTAA+GGG - chr7.2:20615202-20615221 None:intergenic 35.0%
TCTTTCCAAAATGACTTCCA+TGG - chr7.2:20616535-20616554 None:intergenic 35.0%
TTTCATTTGATCTTTCTCCC+TGG + chr7.2:20616771-20616790 MS.gene068056:intron 35.0%
TTTGTCACCGTCTTCTTTAA+TGG + chr7.2:20615735-20615754 MS.gene068056:CDS 35.0%
! AAGTTCCAGTCTTTTGTTCT+TGG - chr7.2:20615108-20615127 None:intergenic 35.0%
! AGGTTATATGACTAGTCATG+TGG + chr7.2:20615666-20615685 MS.gene068056:CDS 35.0%
! CCAGAGTACTTTCTATCAAA+TGG - chr7.2:20616977-20616996 None:intergenic 35.0%
! TCTATTTCTTAAGCAAGCAC+CGG - chr7.2:20616206-20616225 None:intergenic 35.0%
! TTACTCTGATGTTGCTTGTT+TGG + chr7.2:20616491-20616510 MS.gene068056:intron 35.0%
!! CCATTTGATAGAAAGTACTC+TGG + chr7.2:20616974-20616993 MS.gene068056:intron 35.0%
!! CTGTGCCTAATTTCTTGTTT+TGG + chr7.2:20616917-20616936 MS.gene068056:intron 35.0%
!! TTTTGATGGTTAAACCTAGC+TGG + chr7.2:20617321-20617340 MS.gene068056:intron 35.0%
!!! AATATGATGACTGGTTTTGC+AGG + chr7.2:20615646-20615665 MS.gene068056:CDS 35.0%
!!! AGAAGGTTTTTGGCTTTAAC+CGG + chr7.2:20616602-20616621 MS.gene068056:intron 35.0%
!!! TTTTTGGCTTTAACCGGAAA+TGG + chr7.2:20616608-20616627 MS.gene068056:intron 35.0%
AAAAGACTGGAACTTTGGCT+AGG + chr7.2:20615113-20615132 MS.gene068056:CDS 40.0%
AAAATAGGGAATCTGCAGCT+CGG + chr7.2:20615854-20615873 MS.gene068056:CDS 40.0%
AAACCAGCTCAGCAATCTAA+TGG - chr7.2:20616824-20616843 None:intergenic 40.0%
AAAGACTGGAACTTTGGCTA+GGG + chr7.2:20615114-20615133 MS.gene068056:CDS 40.0%
AATGACTTCCATGGTTAGCA+TGG - chr7.2:20616526-20616545 None:intergenic 40.0%
ACAAATGTCACACCAGACAA+AGG - chr7.2:20616110-20616129 None:intergenic 40.0%
AGCTCAGCAATCTAATGGTA+TGG - chr7.2:20616819-20616838 None:intergenic 40.0%
AGGATAATGCTATGTCAGGA+AGG + chr7.2:20615506-20615525 MS.gene068056:CDS 40.0%
AGTGAGGATAATGCTATGTC+AGG + chr7.2:20615502-20615521 MS.gene068056:CDS 40.0%
ATACCATTAGATTGCTGAGC+TGG + chr7.2:20616818-20616837 MS.gene068056:intron 40.0%
ATGAGTTGCTGAAGAGTTTG+TGG + chr7.2:20615221-20615240 MS.gene068056:CDS 40.0%
CAACAAAATACATCCCAGCA+TGG + chr7.2:20615550-20615569 MS.gene068056:CDS 40.0%
CACAAACTCAAGGTAGGAAA+AGG + chr7.2:20615773-20615792 MS.gene068056:CDS 40.0%
CACTGAATCATTTCCTAGTG+AGG + chr7.2:20615486-20615505 MS.gene068056:CDS 40.0%
CAGATACACAAACTCAAGGT+AGG + chr7.2:20615767-20615786 MS.gene068056:CDS 40.0%
CTCACTAGGAAATGATTCAG+TGG - chr7.2:20615488-20615507 None:intergenic 40.0%
CTCTAGTGAATCTTTCATGC+AGG + chr7.2:20617698-20617717 MS.gene068056:intron 40.0%
GACATAGCATTATCCTCACT+AGG - chr7.2:20615502-20615521 None:intergenic 40.0%
GAGGATTTCTTGATGAAAGC+TGG + chr7.2:20615457-20615476 MS.gene068056:CDS 40.0%
GATGAGGTTCAAAATCAGCT+TGG + chr7.2:20615163-20615182 MS.gene068056:CDS 40.0%
GCAATCCAAGAACAAAAGAC+TGG + chr7.2:20615100-20615119 MS.gene068056:CDS 40.0%
GCTCAGCAATCTAATGGTAT+GGG - chr7.2:20616818-20616837 None:intergenic 40.0%
GGAAATTTAGGGAAACCCTT+AGG + chr7.2:20615184-20615203 MS.gene068056:CDS 40.0%
GGATAATGCTATGTCAGGAA+GGG + chr7.2:20615507-20615526 MS.gene068056:CDS 40.0%
GTTGCAGACATAGATAGTTC+TGG - chr7.2:20617583-20617602 None:intergenic 40.0%
TGTTGTGGTTGAGAAAACTG+TGG + chr7.2:20615807-20615826 MS.gene068056:CDS 40.0%
TTCGCGTAAAGATCCATTTC+CGG - chr7.2:20616624-20616643 None:intergenic 40.0%
TTTCTTGATGAAAGCTGGTG+TGG + chr7.2:20615462-20615481 MS.gene068056:CDS 40.0%
! GCTAACCATGGAAGTCATTT+TGG + chr7.2:20616527-20616546 MS.gene068056:intron 40.0%
! TACACTTGGTGAGATGACTT+TGG + chr7.2:20615435-20615454 MS.gene068056:CDS 40.0%
! TGATGCTGATGTTGTTGTTG+TGG - chr7.2:20615613-20615632 None:intergenic 40.0%
! TGTGTATGGTGTTAACGAAC+AGG + chr7.2:20615971-20615990 MS.gene068056:intron 40.0%
! TTTTGCAACCATGCTAACCA+TGG + chr7.2:20616515-20616534 MS.gene068056:intron 40.0%
! TTTTTCCTGCCATCTTGTGA+AGG + chr7.2:20616138-20616157 MS.gene068056:intron 40.0%
!! AGATCACCAGAAAGTGTCAA+TGG - chr7.2:20615340-20615359 None:intergenic 40.0%
!! AGTAACCTTTGAAGTCATGG+AGG - chr7.2:20617150-20617169 None:intergenic 40.0%
ACTGATGGTTACATGCAGCA+TGG + chr7.2:20615286-20615305 MS.gene068056:CDS 45.0%
ATACATCCCAGCATGGTCAT+TGG + chr7.2:20615557-20615576 MS.gene068056:CDS 45.0%
ATGCTGCATGTAACCATCAG+TGG - chr7.2:20615287-20615306 None:intergenic 45.0%
CAGTAGTGTGCAGTTTGTCT+TGG + chr7.2:20617380-20617399 MS.gene068056:intron 45.0%
GATAGGAGAACAGCTACACT+TGG + chr7.2:20615421-20615440 MS.gene068056:CDS 45.0%
GGTTAAACCTAGCTGGACTA+TGG + chr7.2:20617328-20617347 MS.gene068056:intron 45.0%
GTGTATCCTGCATCCAAAAC+AGG - chr7.2:20615700-20615719 None:intergenic 45.0%
TAATGAGGACTTCAACTGGC+CGG + chr7.2:20616184-20616203 MS.gene068056:intron 45.0%
TCTGTCCTCCATGACTTCAA+AGG + chr7.2:20617142-20617161 MS.gene068056:intron 45.0%
TGCAGGATACACTGAAGCAA+TGG + chr7.2:20615708-20615727 MS.gene068056:CDS 45.0%
TGCCATCTTGTGAAGGCAAT+GGG + chr7.2:20616145-20616164 MS.gene068056:intron 45.0%
TGGTTGAGAAAACTGTGGAG+AGG + chr7.2:20615812-20615831 MS.gene068056:CDS 45.0%
TTACATGCAGCATGGTCAAC+TGG + chr7.2:20615294-20615313 MS.gene068056:CDS 45.0%
TTCTGCGAAGCTGATGCTTA+GGG - chr7.2:20617761-20617780 None:intergenic 45.0%
TTGAGAAAACTGTGGAGAGG+AGG + chr7.2:20615815-20615834 MS.gene068056:CDS 45.0%
TTTCTCAACCACAACACCAG+AGG - chr7.2:20615803-20615822 None:intergenic 45.0%
! ACTTGGTGAGATGACTTTGG+AGG + chr7.2:20615438-20615457 MS.gene068056:CDS 45.0%
! TGTGGTTCAACAGCCTGTTT+TGG + chr7.2:20615684-20615703 MS.gene068056:CDS 45.0%
!! ACAGAAGAAGAGTGCTAGTC+AGG + chr7.2:20615399-20615418 MS.gene068056:CDS 45.0%
!! AGAAGAGTGCTAGTCAGGAT+AGG + chr7.2:20615404-20615423 MS.gene068056:CDS 45.0%
!! TTGGATTCTGGAACCACTGA+TGG + chr7.2:20615271-20615290 MS.gene068056:CDS 45.0%
ACAGGCTTACACACAAGAGC+TGG + chr7.2:20615989-20616008 MS.gene068056:intron 50.0%
ACTGCATCCAATGACCATGC+TGG - chr7.2:20615567-20615586 None:intergenic 50.0%
ACTGGAACTTTGGCTAGGGA+AGG + chr7.2:20615118-20615137 MS.gene068056:CDS 50.0%
AGGTAGTCCATAGTCCAGCT+AGG - chr7.2:20617338-20617357 None:intergenic 50.0%
CACCCATTGCCTTCACAAGA+TGG - chr7.2:20616150-20616169 None:intergenic 50.0%
CATCTTGTGAAGGCAATGGG+TGG + chr7.2:20616148-20616167 MS.gene068056:intron 50.0%
CATTGCCTTCACAAGATGGC+AGG - chr7.2:20616146-20616165 None:intergenic 50.0%
CTGAAGCTGCTCAAGGTTCT+GGG + chr7.2:20615248-20615267 MS.gene068056:CDS 50.0%
CTGCATCCAATGACCATGCT+GGG - chr7.2:20615566-20615585 None:intergenic 50.0%
CTGCCATCTTGTGAAGGCAA+TGG + chr7.2:20616144-20616163 MS.gene068056:intron 50.0%
GTTCTGCGAAGCTGATGCTT+AGG - chr7.2:20617762-20617781 None:intergenic 50.0%
GTTGTGGTTGCTGCACTGAA+GGG - chr7.2:20615597-20615616 None:intergenic 50.0%
TGTTGTGGTTGCTGCACTGA+AGG - chr7.2:20615598-20615617 None:intergenic 50.0%
! AGCATGGTCAACTGGCTTCT+GGG + chr7.2:20615302-20615321 MS.gene068056:CDS 50.0%
! TCTGAAGCTGCTCAAGGTTC+TGG + chr7.2:20615247-20615266 MS.gene068056:CDS 50.0%
! TGGACATCTGAAGCTGCTCA+AGG + chr7.2:20615241-20615260 MS.gene068056:CDS 50.0%
!! CAACAGCCTGTTTTGGATGC+AGG + chr7.2:20615691-20615710 MS.gene068056:CDS 50.0%
!! CAAGGTTCTGGGTTGGATTC+TGG + chr7.2:20615259-20615278 MS.gene068056:CDS 50.0%
AGCTGATGCTTAGGGTCTGG+TGG - chr7.2:20617753-20617772 None:intergenic 55.0%
CGAAGCTGATGCTTAGGGTC+TGG - chr7.2:20617756-20617775 None:intergenic 55.0%
GGTAGGAAAAGGGTTGCCTC+TGG + chr7.2:20615784-20615803 MS.gene068056:CDS 55.0%
GTTGCTGCACTGAAGGGACT+TGG - chr7.2:20615591-20615610 None:intergenic 55.0%
TGATGCTTAGGGTCTGGTGG+TGG - chr7.2:20617750-20617769 None:intergenic 55.0%
! AAGGGTTGCCTCTGGTGTTG+TGG + chr7.2:20615792-20615811 MS.gene068056:CDS 55.0%
! CAGCATGGTCAACTGGCTTC+TGG + chr7.2:20615301-20615320 MS.gene068056:CDS 55.0%
!! AGCTGCTCAAGGTTCTGGGT+TGG + chr7.2:20615252-20615271 MS.gene068056:CDS 55.0%
CTGTGGAGAGGAGGCAGAAG+AGG + chr7.2:20615824-20615843 MS.gene068056:CDS 60.0%
!! GGGTCTGGTGGTGGCATACT+TGG - chr7.2:20617741-20617760 None:intergenic 60.0%
!! TCGGTCGCGGGCTAGAAAAC+AGG + chr7.2:20615873-20615892 MS.gene068056:CDS 60.0%
GGAATCTGCAGCTCGGTCGC+GGG + chr7.2:20615861-20615880 MS.gene068056:CDS 65.0%
GGGAATCTGCAGCTCGGTCG+CGG + chr7.2:20615860-20615879 MS.gene068056:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 20615082 20617800 20615082 ID=MS.gene068056
chr7.2 mRNA 20615082 20617800 20615082 ID=MS.gene068056.t1;Parent=MS.gene068056
chr7.2 exon 20615082 20615894 20615082 ID=MS.gene068056.t1.exon1;Parent=MS.gene068056.t1
chr7.2 CDS 20615082 20615894 20615082 ID=cds.MS.gene068056.t1;Parent=MS.gene068056.t1
chr7.2 exon 20615993 20616064 20615993 ID=MS.gene068056.t1.exon2;Parent=MS.gene068056.t1
chr7.2 CDS 20615993 20616064 20615993 ID=cds.MS.gene068056.t1;Parent=MS.gene068056.t1
chr7.2 exon 20617720 20617800 20617720 ID=MS.gene068056.t1.exon3;Parent=MS.gene068056.t1
chr7.2 CDS 20617720 20617800 20617720 ID=cds.MS.gene068056.t1;Parent=MS.gene068056.t1
Gene Sequence

>MS.gene068056

ATGGGATCTCATGGAGGAGCAATCCAAGAACAAAAGACTGGAACTTTGGCTAGGGAAGGATCTTTGTACAATCTCACATTTGATGAGGTTCAAAATCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTAGATGAGTTGCTGAAGAGTTTGTGGACATCTGAAGCTGCTCAAGGTTCTGGGTTGGATTCTGGAACCACTGATGGTTACATGCAGCATGGTCAACTGGCTTCTGGGTCATCTATGAATCCATTGACACTTTCTGGTGATCTTAGTAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTGCTAGTCAGGATAGGAGAACAGCTACACTTGGTGAGATGACTTTGGAGGATTTCTTGATGAAAGCTGGTGTGGCCACTGAATCATTTCCTAGTGAGGATAATGCTATGTCAGGAAGGGTTGATTCTCAACAACAACAGCAACAAAATACATCCCAGCATGGTCATTGGATGCAGTACCAAGTCCCTTCAGTGCAGCAACCACAACAACAACATCAGCATCAAAATCATCAGAATAATATGATGACTGGTTTTGCAGGTTATATGACTAGTCATGTGGTTCAACAGCCTGTTTTGGATGCAGGATACACTGAAGCAATGGTGAGTTTGTCACCGTCTTCTTTAATGGCTACTTCATCAGATACACAAACTCAAGGTAGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCGCGGGCTAGAAAACAGGTTATATTTTTTTGTATGATGTTTGTCATTTGTAGTCATTGTTTTTGTTAATAATTAGAGCAATGACATATATTTGTGTGTATGGTGTTAACGAACAGGCTTACACACAAGAGCTGGAGATCAAAGTTTCACACTTAGAAGAAGAGAATGAAAGGCTTAAAAGATTGCATGTATGTTTCATTCTCATTGCTAGTTTGCATCTATACTTTATTCCTTTGTCTGGTGTGACATTTGTTAGTTAGTTTTTTCCTGCCATCTTGTGAAGGCAATGGGTGGTTGAAATGTTAGTTAATGAGGACTTCAACTGGCCGGTGCTTGCTTAAGAAATAGAATGTTTACACTGGTTGAACTTTCAAAAATATGATTCAATAACTGGTTTACCGTTTCAGTTAGCGTTATTATTCCTTTATTCTTTCTTGAAGTTTTTCACCTTAACATGAATCTCTATTTTGCTTATTAAGCTTTGTGTGGAGTATCTACAAAAATTATTAAACAAATATTTTCAGTGTGAAACAAAATTTCATCATTTGATATTAGTAGCTGCCATTTTGATGCAATGCAGAAGTCCATTGTTTTGCAATGCTAATATTATACTGTTACTCTGATGTTGCTTGTTTGGCTTTTGCAACCATGCTAACCATGGAAGTCATTTTGGAAAGAAGCGAATCGAAGTGTTTGAGTTTCCAGTCAATTTTGTTAAATCATATAGAAGGTTTTTGGCTTTAACCGGAAATGGATCTTTACGCGAAAGTTTATGAGATACTCTGGCTTAGAAATTGCAAATGCATTTATACTAACCATTTAGCTTTTATTGTGACATCTAATTATGATCAAACACTACATGAATGACAGATTTTTATGTTTATCCTGCATAGCTTTCATTTGATCTTTCTCCCTGGTTAGTTATTATAATATTGAAACCCATACCATTAGATTGCTGAGCTGGTTTTTTCCTTTTGTTCAATCCTGTACTACTTCATACATTGTTAAGTTTTCATTATTTCAAAATTGGGACTTAATCTCTGTGCCTAATTTCTTGTTTTGGCACTAAAAGAGCTGCTGATTTTTGAACATTTCCTCCATTTGATAGAAAGTACTCTGGTTTAATGGTGATTTCTGACTTTGTTTTTCTAAAGTTGGAAATATAATATATCTATCACAAGCTTTTGTTAGTTGATTGGATCTTGACATGCCATTAATATTTATCCTTTCCTGAATATTGTTTTGGAGGGTATTATTATTAACACTCTGTCCTCCATGACTTCAAAGGTTACTTTAATGTTTCAAATCAAGAATTGTGATGATGACTTTTTTTTTTTGTTGAGAATTTGTGGTCTAGATGACAAAGATGCAGCCATGAGAATAGAGTTTGAGCTTCCTTCATTCCATTTCTGAAAACATCTATATAATAAAAATGATGTGGTGATTTTGATGGTTAAACCTAGCTGGACTATGGACTACCTTTTTGCTATATGATCTGTTTAACAGTAGTGTGCAGTTTGTCTTGGTGACAAAATTTCAAGTCAATTCTATAAGATTTGATGCTAATATAGAAAATATAAACTCACATTGAATAAATTAAGCTATCAGTAGTAATAACCTTGATCATTTATCTCTGATTTATGTCAACTTTTTTAATAGTACTGTTCTAGAATGATTTAAATTTGTAAGATTTAAACTGTGCGCCAGAACTATCTATGTCTGCAACCTTAAGTAATTCAATTAGGAATAACTCAGCTTTTGTGCTGATCTCTAAAAAGTGATTTGGTATGAATCTAGATGATTTATCTCTTCTCATATTAACTCTAGTGAATCTTTCATGCAGGAGATAGAGAGAGTATTGCCAAGTATGCCACCACCAGACCCTAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCCTTTGA
Protein sequence

>MS.gene068056.t1

MGSHGGAIQEQKTGTLAREGSLYNLTFDEVQNQLGNLGKPLGSMNLDELLKSLWTSEAAQGSGLDSGTTDGYMQHGQLASGSSMNPLTLSGDLSKKTIDEVWRDMQQKKSASQDRRTATLGEMTLEDFLMKAGVATESFPSEDNAMSGRVDSQQQQQQNTSQHGHWMQYQVPSVQQPQQQHQHQNHQNNMMTGFAGYMTSHVVQQPVLDAGYTEAMVSLSPSSLMATSSDTQTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKRLHEIERVLPSMPPPDPKHQLRRTSSAPL