Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41906.t1 | XP_003624832.1 | 95 | 320 | 3 | 1 | 1 | 307 | 1 | 320 | 1.20E-144 | 522.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41906.t1 | Q9LES3 | 52.4 | 328 | 102 | 11 | 1 | 306 | 1 | 296 | 2.0e-60 | 234.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41906.t1 | Q2HUH2 | 95.0 | 320 | 3 | 1 | 1 | 307 | 1 | 320 | 8.3e-145 | 522.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41906.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene41906 | MS.gene83996 | PPI |
MS.gene41906 | MS.gene013906 | PPI |
MS.gene41906 | MS.gene41866 | PPI |
MS.gene41906 | MS.gene068056 | PPI |
MS.gene41906 | MS.gene47208 | PPI |
MS.gene41906 | MS.gene62322 | PPI |
MS.gene41906 | MS.gene55561 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41906.t1 | MTR_7g088090 | 95.000 | 320 | 3 | 1 | 1 | 307 | 1 | 320 | 0.0 | 619 |
MS.gene41906.t1 | MTR_6g026800 | 59.337 | 332 | 99 | 8 | 1 | 307 | 1 | 321 | 8.64e-109 | 319 |
MS.gene41906.t1 | MTR_3g010660 | 46.708 | 319 | 123 | 8 | 16 | 305 | 20 | 320 | 4.38e-79 | 243 |
MS.gene41906.t1 | MTR_8g043960 | 45.806 | 310 | 132 | 7 | 15 | 307 | 23 | 313 | 8.15e-76 | 234 |
MS.gene41906.t1 | MTR_2g086390 | 31.208 | 298 | 126 | 10 | 19 | 285 | 11 | 260 | 1.03e-24 | 101 |
MS.gene41906.t1 | MTR_2g086390 | 30.479 | 292 | 125 | 8 | 19 | 280 | 11 | 254 | 4.59e-24 | 99.4 |
MS.gene41906.t1 | MTR_2g086340 | 33.447 | 293 | 136 | 10 | 17 | 280 | 23 | 285 | 1.78e-19 | 87.4 |
MS.gene41906.t1 | MTR_5g088230 | 47.328 | 131 | 62 | 3 | 181 | 305 | 138 | 267 | 2.31e-19 | 86.3 |
MS.gene41906.t1 | MTR_5g088230 | 39.200 | 125 | 51 | 2 | 16 | 121 | 22 | 140 | 1.48e-15 | 75.5 |
MS.gene41906.t1 | MTR_5g088230 | 47.328 | 131 | 62 | 3 | 181 | 305 | 133 | 262 | 2.69e-19 | 85.9 |
MS.gene41906.t1 | MTR_5g088230 | 39.200 | 125 | 51 | 2 | 16 | 121 | 17 | 135 | 1.44e-15 | 75.5 |
MS.gene41906.t1 | MTR_4g085910 | 40.310 | 129 | 59 | 3 | 16 | 128 | 18 | 144 | 1.14e-18 | 85.9 |
MS.gene41906.t1 | MTR_4g085910 | 63.380 | 71 | 22 | 1 | 209 | 279 | 278 | 344 | 7.59e-17 | 80.5 |
MS.gene41906.t1 | MTR_3g101780 | 37.333 | 150 | 66 | 3 | 2 | 133 | 14 | 153 | 5.42e-18 | 84.3 |
MS.gene41906.t1 | MTR_3g101780 | 67.213 | 61 | 19 | 1 | 222 | 282 | 339 | 398 | 5.76e-17 | 81.3 |
MS.gene41906.t1 | MTR_5g060990 | 28.947 | 304 | 156 | 9 | 16 | 270 | 12 | 304 | 6.59e-18 | 82.8 |
MS.gene41906.t1 | MTR_7g015990 | 76.596 | 47 | 8 | 1 | 236 | 279 | 120 | 166 | 5.50e-13 | 67.0 |
MS.gene41906.t1 | MTR_8g075130 | 62.963 | 54 | 17 | 1 | 229 | 279 | 98 | 151 | 1.80e-12 | 65.1 |
MS.gene41906.t1 | MTR_4g094390 | 60.714 | 56 | 22 | 0 | 223 | 278 | 117 | 172 | 6.83e-12 | 63.9 |
MS.gene41906.t1 | MTR_5g022780 | 64.286 | 56 | 8 | 1 | 236 | 279 | 166 | 221 | 1.17e-11 | 63.9 |
MS.gene41906.t1 | MTR_7g104480 | 28.723 | 188 | 87 | 4 | 22 | 178 | 45 | 216 | 1.63e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41906.t1 | AT3G56850 | 52.888 | 329 | 101 | 10 | 1 | 307 | 1 | 297 | 1.42e-92 | 277 |
MS.gene41906.t1 | AT2G41070 | 46.319 | 326 | 92 | 11 | 1 | 307 | 1 | 262 | 4.24e-74 | 228 |
MS.gene41906.t1 | AT2G41070 | 46.319 | 326 | 92 | 11 | 1 | 307 | 1 | 262 | 4.24e-74 | 228 |
MS.gene41906.t1 | AT2G41070 | 46.319 | 326 | 92 | 11 | 1 | 307 | 1 | 262 | 4.24e-74 | 228 |
MS.gene41906.t1 | AT2G41070 | 46.319 | 326 | 92 | 11 | 1 | 307 | 10 | 271 | 4.84e-74 | 229 |
MS.gene41906.t1 | AT2G41070 | 44.482 | 299 | 83 | 11 | 1 | 280 | 1 | 235 | 5.23e-59 | 189 |
MS.gene41906.t1 | AT1G49720 | 36.170 | 188 | 80 | 5 | 16 | 177 | 23 | 196 | 8.74e-21 | 92.0 |
MS.gene41906.t1 | AT1G49720 | 36.170 | 188 | 80 | 5 | 16 | 177 | 23 | 196 | 1.12e-20 | 91.7 |
MS.gene41906.t1 | AT1G49720 | 36.170 | 188 | 80 | 5 | 16 | 177 | 23 | 196 | 1.12e-20 | 91.7 |
MS.gene41906.t1 | AT3G44460 | 32.877 | 292 | 139 | 8 | 16 | 282 | 35 | 294 | 4.52e-20 | 89.4 |
MS.gene41906.t1 | AT3G19290 | 41.429 | 140 | 51 | 3 | 16 | 124 | 34 | 173 | 5.35e-20 | 90.1 |
MS.gene41906.t1 | AT3G19290 | 51.316 | 76 | 28 | 2 | 204 | 279 | 329 | 395 | 1.38e-13 | 71.2 |
MS.gene41906.t1 | AT3G19290 | 41.429 | 140 | 51 | 3 | 16 | 124 | 34 | 173 | 5.47e-20 | 90.1 |
MS.gene41906.t1 | AT3G19290 | 41.429 | 140 | 51 | 3 | 16 | 124 | 34 | 173 | 6.31e-20 | 89.7 |
MS.gene41906.t1 | AT3G19290 | 51.316 | 76 | 28 | 2 | 204 | 279 | 329 | 395 | 1.63e-13 | 70.9 |
MS.gene41906.t1 | AT3G19290 | 41.429 | 140 | 51 | 3 | 16 | 124 | 34 | 173 | 6.31e-20 | 89.7 |
MS.gene41906.t1 | AT3G19290 | 51.316 | 76 | 28 | 2 | 204 | 279 | 329 | 395 | 1.63e-13 | 70.9 |
MS.gene41906.t1 | AT3G19290 | 41.429 | 140 | 51 | 3 | 16 | 124 | 34 | 173 | 6.35e-20 | 89.7 |
MS.gene41906.t1 | AT3G19290 | 51.316 | 76 | 28 | 2 | 204 | 279 | 329 | 395 | 1.67e-13 | 70.9 |
MS.gene41906.t1 | AT1G45249 | 52.252 | 111 | 38 | 5 | 204 | 306 | 312 | 415 | 1.47e-19 | 88.6 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.20e-13 | 71.2 |
MS.gene41906.t1 | AT1G45249 | 52.252 | 111 | 38 | 5 | 204 | 306 | 327 | 430 | 1.64e-19 | 88.6 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 36 | 203 | 1.13e-13 | 71.6 |
MS.gene41906.t1 | AT1G45249 | 52.252 | 111 | 38 | 5 | 204 | 306 | 327 | 430 | 1.64e-19 | 88.6 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 36 | 203 | 1.13e-13 | 71.6 |
MS.gene41906.t1 | AT2G36270 | 70.149 | 67 | 18 | 2 | 220 | 285 | 341 | 406 | 2.78e-18 | 85.1 |
MS.gene41906.t1 | AT2G36270 | 70.149 | 67 | 18 | 2 | 220 | 285 | 341 | 406 | 2.92e-18 | 85.1 |
MS.gene41906.t1 | AT2G36270 | 70.149 | 67 | 18 | 2 | 220 | 285 | 341 | 406 | 2.92e-18 | 85.1 |
MS.gene41906.t1 | AT4G34000 | 48.113 | 106 | 44 | 3 | 184 | 279 | 312 | 416 | 2.22e-17 | 82.4 |
MS.gene41906.t1 | AT4G35900 | 59.155 | 71 | 28 | 1 | 237 | 307 | 216 | 285 | 2.61e-17 | 80.9 |
MS.gene41906.t1 | AT4G34000 | 48.113 | 106 | 44 | 3 | 184 | 279 | 312 | 416 | 2.67e-17 | 82.4 |
MS.gene41906.t1 | AT4G34000 | 48.113 | 106 | 44 | 3 | 184 | 279 | 312 | 416 | 2.67e-17 | 82.4 |
MS.gene41906.t1 | AT4G34000 | 48.113 | 106 | 44 | 3 | 184 | 279 | 312 | 416 | 2.67e-17 | 82.4 |
MS.gene41906.t1 | AT1G45249 | 47.541 | 122 | 38 | 6 | 204 | 306 | 312 | 426 | 1.19e-16 | 80.5 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.28e-13 | 71.2 |
MS.gene41906.t1 | AT2G17770 | 55.556 | 72 | 31 | 1 | 236 | 307 | 125 | 195 | 4.04e-15 | 72.8 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.64e-13 | 70.9 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.64e-13 | 70.9 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.64e-13 | 70.9 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 1.64e-13 | 70.9 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 2.10e-13 | 70.5 |
MS.gene41906.t1 | AT1G45249 | 34.091 | 176 | 76 | 6 | 16 | 159 | 21 | 188 | 2.10e-13 | 70.5 |
MS.gene41906.t1 | AT1G03970 | 57.576 | 66 | 26 | 1 | 219 | 284 | 171 | 234 | 7.00e-12 | 65.1 |
MS.gene41906.t1 | AT5G42910 | 43.925 | 107 | 50 | 5 | 205 | 304 | 264 | 367 | 2.17e-11 | 64.3 |
MS.gene41906.t1 | AT5G44080 | 47.674 | 86 | 33 | 2 | 231 | 304 | 227 | 312 | 2.49e-11 | 63.9 |
Find 79 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATCAGCTTGGAAATTT+AGG | 0.083769 | 7.4:-20254388 | MS.gene41906:CDS |
CAGCATGGTCAACTGGCTTC+TGG | 0.131375 | 7.4:-20254259 | MS.gene41906:CDS |
ATGAATCCATTGACACTTTC+TGG | 0.149546 | 7.4:-20254229 | MS.gene41906:CDS |
CAAGGTTCTGGGTTGGATTC+TGG | 0.152919 | 7.4:-20254301 | MS.gene41906:CDS |
TCTGAAGCTGCTCAAGGTTC+TGG | 0.221535 | 7.4:-20254313 | MS.gene41906:CDS |
AAAATCAGCTTGGAAATTTA+GGG | 0.258433 | 7.4:-20254387 | MS.gene41906:CDS |
TGTGGTTCAACAGCCTGTTT+TGG | 0.318849 | 7.4:-20253881 | MS.gene41906:CDS |
GTTCTGCGAAGCTGATGCTT+AGG | 0.411723 | 7.4:+20251771 | None:intergenic |
GGGTCTGGTGGTGGCATACT+TGG | 0.413639 | 7.4:+20251792 | None:intergenic |
ATCTAGATTCATGCTTCCTA+AGG | 0.414294 | 7.4:+20254360 | None:intergenic |
CACAAACTCAAGGTCGGAAA+AGG | 0.415817 | 7.4:-20253792 | MS.gene41906:CDS |
TCGGTCGCGGGCTAGAAAAC+AGG | 0.419550 | 7.4:-20253692 | MS.gene41906:intron |
CACCATTGCTTCAGTGTATC+CGG | 0.423926 | 7.4:+20253855 | None:intergenic |
CTGAAGCTGCTCAAGGTTCT+GGG | 0.427919 | 7.4:-20254312 | MS.gene41906:CDS |
AGAACAAAAGACTGGAACTT+TGG | 0.437900 | 7.4:-20254452 | MS.gene41906:CDS |
TTACATGCAGCATGGTCAAC+TGG | 0.446389 | 7.4:-20254266 | MS.gene41906:CDS |
ATGAGTTGCTGAAGAGTTTG+TGG | 0.448987 | 7.4:-20254339 | MS.gene41906:CDS |
GTGTATCCGGCATCCAAAAC+AGG | 0.451089 | 7.4:+20253868 | None:intergenic |
GGGAATCTGCAGCTCGGTCG+CGG | 0.454529 | 7.4:-20253705 | MS.gene41906:CDS |
AGCATGGTCAACTGGCTTCT+GGG | 0.456125 | 7.4:-20254258 | MS.gene41906:CDS |
TTTGCAATAAAGTCTTCAAA+GGG | 0.467582 | 7.4:+20251737 | None:intergenic |
ATACATCCCAGCATGGTCAT+TGG | 0.471305 | 7.4:-20254008 | MS.gene41906:CDS |
AGCTGCTCAAGGTTCTGGGT+TGG | 0.476833 | 7.4:-20254308 | MS.gene41906:CDS |
TTCTGCGAAGCTGATGCTTA+GGG | 0.478401 | 7.4:+20251772 | None:intergenic |
CTGTGGAGAGGAGGCAGAAG+AGG | 0.493448 | 7.4:-20253741 | MS.gene41906:CDS |
ACTTGGTGAGATGACTTTGG+AGG | 0.493788 | 7.4:-20254124 | MS.gene41906:CDS |
TGATGCTGATGTTGTTGTTG+TGG | 0.499071 | 7.4:+20253955 | None:intergenic |
AGTGAGGATAATGCTATGTC+AGG | 0.499581 | 7.4:-20254060 | MS.gene41906:CDS |
GAGGATTTCTTGATGAAAGC+TGG | 0.506897 | 7.4:-20254105 | MS.gene41906:CDS |
GGAAATTTAGGGAAACCCTT+AGG | 0.509333 | 7.4:-20254376 | MS.gene41906:CDS |
AGATCACCAGAAAGTGTCAA+TGG | 0.510245 | 7.4:+20254223 | None:intergenic |
TGTTGTGGTTGCTGCACTGA+AGG | 0.512843 | 7.4:+20253970 | None:intergenic |
GATGAGGTTCAAAATCAGCT+TGG | 0.519734 | 7.4:-20254397 | MS.gene41906:CDS |
CATCAGAATAATATGATGAC+TGG | 0.520032 | 7.4:-20253928 | MS.gene41906:CDS |
GGTCGGAAAAGGGTTGCCTC+TGG | 0.520884 | 7.4:-20253781 | MS.gene41906:CDS |
GGAATCTGCAGCTCGGTCGC+GGG | 0.521215 | 7.4:-20253704 | MS.gene41906:CDS |
AAGGGTTGCCTCTGGTGTTG+TGG | 0.526242 | 7.4:-20253773 | MS.gene41906:CDS |
TACACTTGGTGAGATGACTT+TGG | 0.528431 | 7.4:-20254127 | MS.gene41906:CDS |
CGAAGCTGATGCTTAGGGTC+TGG | 0.529237 | 7.4:+20251777 | None:intergenic |
GTTGTGGTTGCTGCACTGAA+GGG | 0.529499 | 7.4:+20253971 | None:intergenic |
TGGACATCTGAAGCTGCTCA+AGG | 0.541485 | 7.4:-20254319 | MS.gene41906:CDS |
ACAGGCTTACACACAAGAGC+TGG | 0.542704 | 7.4:-20253576 | MS.gene41906:intron |
ATGCTGCATGTAACCATCAC+TGG | 0.546349 | 7.4:+20254276 | None:intergenic |
ACAAACTCAAGGTCGGAAAA+GGG | 0.554545 | 7.4:-20253791 | MS.gene41906:CDS |
AAAAGACTGGAACTTTGGCT+AGG | 0.557530 | 7.4:-20254447 | MS.gene41906:CDS |
GCAATCCAAGAACAAAAGAC+TGG | 0.559028 | 7.4:-20254460 | MS.gene41906:CDS |
TGATGCTTAGGGTCTGGTGG+TGG | 0.567579 | 7.4:+20251783 | None:intergenic |
GTACAATCTCACATTTGATG+AGG | 0.569368 | 7.4:-20254413 | MS.gene41906:CDS |
TCTAGATTCATGCTTCCTAA+GGG | 0.569459 | 7.4:+20254361 | None:intergenic |
AGGTTATATGGCTGGTCATG+TGG | 0.572563 | 7.4:-20253899 | MS.gene41906:CDS |
GTTGCTGCACTGAAGGGACT+TGG | 0.573952 | 7.4:+20253977 | None:intergenic |
TAGTAAGAAAACTATTGATG+AGG | 0.581872 | 7.4:-20254200 | MS.gene41906:intron |
ACTGCATCCAATGACCATGC+TGG | 0.582214 | 7.4:+20254001 | None:intergenic |
TTGGATTCTGGAACCAGTGA+TGG | 0.584696 | 7.4:-20254289 | MS.gene41906:CDS |
ACTTAGAAGAAGAGAATGAA+AGG | 0.584805 | 7.4:-20253538 | MS.gene41906:CDS |
CAGATACACAAACTCAAGGT+CGG | 0.585416 | 7.4:-20253798 | MS.gene41906:CDS |
AGGATAATGCTATGTCAGGA+AGG | 0.586500 | 7.4:-20254056 | MS.gene41906:CDS |
CACTGAATCATTTCCTAGTG+AGG | 0.587073 | 7.4:-20254076 | MS.gene41906:CDS |
AGCTGATGCTTAGGGTCTGG+TGG | 0.587120 | 7.4:+20251780 | None:intergenic |
AAAGACTGGAACTTTGGCTA+GGG | 0.596011 | 7.4:-20254446 | MS.gene41906:CDS |
CTGCATCCAATGACCATGCT+GGG | 0.608106 | 7.4:+20254002 | None:intergenic |
ACTGGAACTTTGGCTAGGGA+AGG | 0.612277 | 7.4:-20254442 | MS.gene41906:CDS |
TTGAGAAAACTGTGGAGAGG+AGG | 0.618222 | 7.4:-20253750 | MS.gene41906:CDS |
GAAGTAGCTATTAAAGAAGA+CGG | 0.621434 | 7.4:+20253823 | None:intergenic |
AAAATAGGGAATCTGCAGCT+CGG | 0.624873 | 7.4:-20253711 | MS.gene41906:CDS |
TTGAAAATGGGATCTCATGG+AGG | 0.632717 | 7.4:-20254484 | None:intergenic |
GATAGGAGAACAGCTACACT+TGG | 0.637974 | 7.4:-20254141 | MS.gene41906:CDS |
TCATCAGATACACAAACTCA+AGG | 0.638560 | 7.4:-20253802 | MS.gene41906:CDS |
TTTCTTGATGAAAGCTGGTG+TGG | 0.647086 | 7.4:-20254100 | MS.gene41906:CDS |
CTCACTAGGAAATGATTCAG+TGG | 0.653229 | 7.4:+20254077 | None:intergenic |
TTTCTCAACCACAACACCAG+AGG | 0.653421 | 7.4:+20253765 | None:intergenic |
GGATAATGCTATGTCAGGAA+GGG | 0.659996 | 7.4:-20254055 | MS.gene41906:CDS |
TGCCGGATACACTGAAGCAA+TGG | 0.661929 | 7.4:-20253857 | MS.gene41906:CDS |
GACATAGCATTATCCTCACT+AGG | 0.666638 | 7.4:+20254063 | None:intergenic |
AGTGATGGTTACATGCAGCA+TGG | 0.680149 | 7.4:-20254274 | MS.gene41906:CDS |
CAACAAAATACATCCCAGCA+TGG | 0.680747 | 7.4:-20254015 | MS.gene41906:CDS |
TGGTTGAGAAAACTGTGGAG+AGG | 0.682616 | 7.4:-20253753 | MS.gene41906:CDS |
TTGCAATAAAGTCTTCAAAG+GGG | 0.695239 | 7.4:+20251738 | None:intergenic |
TGTTGTGGTTGAGAAAACTG+TGG | 0.749971 | 7.4:-20253758 | MS.gene41906:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTATAATAACTAACCA+GGG | + | chr7.4:20253455-20253474 | None:intergenic | 15.0% |
!!! | AGTTTTCATTATTTCAAAAT+TGG | - | chr7.4:20253548-20253567 | MS.gene41906:CDS | 15.0% |
!!! | ATTTTGTTAAATCATATAGA+AGG | - | chr7.4:20253249-20253268 | MS.gene41906:intron | 15.0% |
!!! | GTTTTCATTATTTCAAAATT+GGG | - | chr7.4:20253549-20253568 | MS.gene41906:CDS | 15.0% |
!! | AAAACTTCAAGAAAGAATAA+AGG | + | chr7.4:20252965-20252984 | None:intergenic | 20.0% |
!! | AATAATAATGCTAACTGAAA+AGG | + | chr7.4:20252942-20252961 | None:intergenic | 20.0% |
!! | ATTCCTAATCGAATTAATTA+AGG | + | chr7.4:20254303-20254322 | None:intergenic | 20.0% |
!! | CAAAAATATGATTCAATAAC+TGG | - | chr7.4:20252912-20252931 | MS.gene41906:intron | 20.0% |
!! | CAATATTATAATAACTAACC+AGG | + | chr7.4:20253456-20253475 | None:intergenic | 20.0% |
!! | TATGATTTAACAAAATTGAC+TGG | + | chr7.4:20253245-20253264 | None:intergenic | 20.0% |
!! | TCTATATAATAAAAACGATG+TGG | - | chr7.4:20253960-20253979 | MS.gene41906:CDS | 20.0% |
!!! | TAAATCATATAGAAGGTTTT+TGG | - | chr7.4:20253256-20253275 | MS.gene41906:intron | 20.0% |
!!! | TATATAGATGTTTTCAGAAA+TGG | + | chr7.4:20253948-20253967 | None:intergenic | 20.0% |
! | AAAATCAGCTTGGAAATTTA+GGG | - | chr7.4:20251843-20251862 | MS.gene41906:intron | 25.0% |
! | AAGAAATAGAATGTTTACAC+TGG | - | chr7.4:20252880-20252899 | MS.gene41906:intron | 25.0% |
! | AGAAGAGGATGATTAAAAAT+AGG | - | chr7.4:20252504-20252523 | MS.gene41906:intron | 25.0% |
! | ATATTAGCATTGCAAAACAA+TGG | + | chr7.4:20253128-20253147 | None:intergenic | 25.0% |
! | ATGACATATATTTGTGTGTA+TGG | - | chr7.4:20252622-20252641 | MS.gene41906:intron | 25.0% |
! | ATGTCACAATAAAAGCTAAA+TGG | + | chr7.4:20253359-20253378 | None:intergenic | 25.0% |
! | CAAAATAGAGATTCATGTTA+AGG | + | chr7.4:20252991-20253010 | None:intergenic | 25.0% |
! | CAACCTTAATTAATTCGATT+AGG | - | chr7.4:20254297-20254316 | MS.gene41906:CDS | 25.0% |
! | CAGGAAAGGATAAATATTAA+TGG | + | chr7.4:20253754-20253773 | None:intergenic | 25.0% |
! | GAAGAGGATGATTAAAAATA+GGG | - | chr7.4:20252505-20252524 | MS.gene41906:intron | 25.0% |
! | TAGTAAGAAAACTATTGATG+AGG | - | chr7.4:20252030-20252049 | MS.gene41906:intron | 25.0% |
!!! | TGACTTTGTTTTTCTAAAGT+TGG | - | chr7.4:20253676-20253695 | MS.gene41906:intron | 25.0% |
!!! | TTTGTTTTGTTGAGAATTTG+TGG | - | chr7.4:20253871-20253890 | MS.gene41906:CDS | 25.0% |
AAAGCAGAGATAAATGATCA+AGG | + | chr7.4:20254195-20254214 | None:intergenic | 30.0% | |
AACAATGTATGAAGTAGTAC+AGG | + | chr7.4:20253527-20253546 | None:intergenic | 30.0% | |
AACTAACAAAAGCTTGTGAT+AGG | + | chr7.4:20253714-20253733 | None:intergenic | 30.0% | |
ACTTAGAAGAAGAGAATGAA+AGG | - | chr7.4:20252692-20252711 | MS.gene41906:intron | 30.0% | |
AGAAAACTATTGATGAGGTT+TGG | - | chr7.4:20252035-20252054 | MS.gene41906:intron | 30.0% | |
AGACAGATCATAAAGCAAAA+AGG | + | chr7.4:20254056-20254075 | None:intergenic | 30.0% | |
CAAAATCAGCTTGGAAATTT+AGG | - | chr7.4:20251842-20251861 | MS.gene41906:intron | 30.0% | |
CATCAGAATAATATGATGAC+TGG | - | chr7.4:20252302-20252321 | MS.gene41906:intron | 30.0% | |
CATTTATCTCTGCTTTATGT+AGG | - | chr7.4:20254199-20254218 | MS.gene41906:intron | 30.0% | |
CTATACTTTATTCCTTTGTC+TGG | - | chr7.4:20252759-20252778 | MS.gene41906:intron | 30.0% | |
GAAGTAGCTATTAAAGAAGA+CGG | + | chr7.4:20252410-20252429 | None:intergenic | 30.0% | |
GGTTGAAATGTTAGTTAATG+AGG | - | chr7.4:20252833-20252852 | MS.gene41906:intron | 30.0% | |
TAGTGCCAAAACAAGAAATT+AGG | + | chr7.4:20253589-20253608 | None:intergenic | 30.0% | |
TCCAAAACAATATTCAGGAA+AGG | + | chr7.4:20253768-20253787 | None:intergenic | 30.0% | |
! | AAACGATGTGGTAATTTTGA+TGG | - | chr7.4:20253972-20253991 | MS.gene41906:CDS | 30.0% |
! | ACAAGCTTTTGTTAGTTGAT+TGG | - | chr7.4:20253717-20253736 | MS.gene41906:CDS | 30.0% |
! | TCCTTTCCTGAATATTGTTT+TGG | - | chr7.4:20253764-20253783 | MS.gene41906:CDS | 30.0% |
! | TGTTTTCAGAAATGGAATGA+AGG | + | chr7.4:20253940-20253959 | None:intergenic | 30.0% |
! | TTTGCTTATTAAGCTTTGTG+TGG | - | chr7.4:20253007-20253026 | MS.gene41906:intron | 30.0% |
!! | TAAAGTAACCTTTGAAGTCA+TGG | + | chr7.4:20253817-20253836 | None:intergenic | 30.0% |
!! | TAGAAAGTACTCTGGTTTAA+TGG | - | chr7.4:20253646-20253665 | MS.gene41906:intron | 30.0% |
!!! | TTCCTGAATATTGTTTTGGA+GGG | - | chr7.4:20253768-20253787 | MS.gene41906:CDS | 30.0% |
!!! | TTTCCTGAATATTGTTTTGG+AGG | - | chr7.4:20253767-20253786 | MS.gene41906:CDS | 30.0% |
ACTTCTGCATTGCATCAAAA+TGG | + | chr7.4:20253105-20253124 | None:intergenic | 35.0% | |
AGAACAAAAGACTGGAACTT+TGG | - | chr7.4:20251778-20251797 | MS.gene41906:CDS | 35.0% | |
AGATCAAATGAAAGCTATGC+AGG | + | chr7.4:20253428-20253447 | None:intergenic | 35.0% | |
ATCTAGATTCATGCTTCCTA+AGG | + | chr7.4:20251873-20251892 | None:intergenic | 35.0% | |
ATGAATCCATTGACACTTTC+TGG | - | chr7.4:20252001-20252020 | MS.gene41906:intron | 35.0% | |
CGAAAGTTTATGAGATACTC+TGG | - | chr7.4:20253304-20253323 | MS.gene41906:intron | 35.0% | |
GAGTACTTTCTATCAAATGG+AGG | + | chr7.4:20253638-20253657 | None:intergenic | 35.0% | |
GTACAATCTCACATTTGATG+AGG | - | chr7.4:20251817-20251836 | MS.gene41906:intron | 35.0% | |
GTAGTACAGGATTGAACAAA+AGG | + | chr7.4:20253514-20253533 | None:intergenic | 35.0% | |
TACCCTCCAAAACAATATTC+AGG | + | chr7.4:20253773-20253792 | None:intergenic | 35.0% | |
TAGTTAATGAGGACTTCAAC+TGG | - | chr7.4:20252844-20252863 | MS.gene41906:intron | 35.0% | |
TCATCAGATACACAAACTCA+AGG | - | chr7.4:20252428-20252447 | MS.gene41906:intron | 35.0% | |
TCTAGATTCATGCTTCCTAA+GGG | + | chr7.4:20251872-20251891 | None:intergenic | 35.0% | |
TCTTTCCAAAATGACTTCCA+TGG | + | chr7.4:20253199-20253218 | None:intergenic | 35.0% | |
TTTCATTTGATCTTTCTCCC+TGG | - | chr7.4:20253435-20253454 | MS.gene41906:intron | 35.0% | |
! | AAGTTCCAGTCTTTTGTTCT+TGG | + | chr7.4:20251778-20251797 | None:intergenic | 35.0% |
! | CCAGAGTACTTTCTATCAAA+TGG | + | chr7.4:20253641-20253660 | None:intergenic | 35.0% |
! | CTGATCTCTAGAAAGTGATT+TGG | - | chr7.4:20254338-20254357 | MS.gene41906:CDS | 35.0% |
! | TCTATTTCTTAAGCAAGCAC+CGG | + | chr7.4:20252870-20252889 | None:intergenic | 35.0% |
! | TTACTCTGATGTTGCTTGTT+TGG | - | chr7.4:20253155-20253174 | MS.gene41906:intron | 35.0% |
!! | CCATTTGATAGAAAGTACTC+TGG | - | chr7.4:20253638-20253657 | MS.gene41906:intron | 35.0% |
!! | CTGTGCCTAATTTCTTGTTT+TGG | - | chr7.4:20253581-20253600 | MS.gene41906:intron | 35.0% |
!!! | AATATGATGACTGGTTTTGC+AGG | - | chr7.4:20252311-20252330 | MS.gene41906:intron | 35.0% |
!!! | AGAAGGTTTTTGGCTTTAAC+CGG | - | chr7.4:20253266-20253285 | MS.gene41906:intron | 35.0% |
!!! | TTTTTGGCTTTAACCGGAAA+TGG | - | chr7.4:20253272-20253291 | MS.gene41906:intron | 35.0% |
AAAAGACTGGAACTTTGGCT+AGG | - | chr7.4:20251783-20251802 | MS.gene41906:CDS | 40.0% | |
AAAATAGGGAATCTGCAGCT+CGG | - | chr7.4:20252519-20252538 | MS.gene41906:intron | 40.0% | |
AAACCAGCTCAGCAATCTAA+TGG | + | chr7.4:20253488-20253507 | None:intergenic | 40.0% | |
AAAGACTGGAACTTTGGCTA+GGG | - | chr7.4:20251784-20251803 | MS.gene41906:CDS | 40.0% | |
AACCAGCTCAGCAATCTAAT+GGG | + | chr7.4:20253487-20253506 | None:intergenic | 40.0% | |
AAGCTCAAACTCTATTCTCG+TGG | + | chr7.4:20253917-20253936 | None:intergenic | 40.0% | |
AATGACTTCCATGGTTAGCA+TGG | + | chr7.4:20253190-20253209 | None:intergenic | 40.0% | |
ACAAACTCAAGGTCGGAAAA+GGG | - | chr7.4:20252439-20252458 | MS.gene41906:intron | 40.0% | |
ACAAATGTCACACCAGACAA+AGG | + | chr7.4:20252774-20252793 | None:intergenic | 40.0% | |
AGATAAACCTAGCTGGACTA+TGG | - | chr7.4:20254026-20254045 | MS.gene41906:CDS | 40.0% | |
AGGATAATGCTATGTCAGGA+AGG | - | chr7.4:20252174-20252193 | MS.gene41906:intron | 40.0% | |
AGTGAGGATAATGCTATGTC+AGG | - | chr7.4:20252170-20252189 | MS.gene41906:intron | 40.0% | |
ATGAGTTGCTGAAGAGTTTG+TGG | - | chr7.4:20251891-20251910 | MS.gene41906:intron | 40.0% | |
CAACAAAATACATCCCAGCA+TGG | - | chr7.4:20252215-20252234 | MS.gene41906:intron | 40.0% | |
CACTGAATCATTTCCTAGTG+AGG | - | chr7.4:20252154-20252173 | MS.gene41906:intron | 40.0% | |
CAGATACACAAACTCAAGGT+CGG | - | chr7.4:20252432-20252451 | MS.gene41906:intron | 40.0% | |
CATTAGTGTGCAGTTTGTCT+TGG | - | chr7.4:20254078-20254097 | MS.gene41906:CDS | 40.0% | |
CTCACTAGGAAATGATTCAG+TGG | + | chr7.4:20252156-20252175 | None:intergenic | 40.0% | |
GAAAGTGAGATAAACCTAGC+TGG | - | chr7.4:20254019-20254038 | MS.gene41906:CDS | 40.0% | |
GACATAGCATTATCCTCACT+AGG | + | chr7.4:20252170-20252189 | None:intergenic | 40.0% | |
GAGGATTTCTTGATGAAAGC+TGG | - | chr7.4:20252125-20252144 | MS.gene41906:intron | 40.0% | |
GATGAGGTTCAAAATCAGCT+TGG | - | chr7.4:20251833-20251852 | MS.gene41906:intron | 40.0% | |
GCAATCCAAGAACAAAAGAC+TGG | - | chr7.4:20251770-20251789 | MS.gene41906:CDS | 40.0% | |
GGAAATTTAGGGAAACCCTT+AGG | - | chr7.4:20251854-20251873 | MS.gene41906:intron | 40.0% | |
GGATAATGCTATGTCAGGAA+GGG | - | chr7.4:20252175-20252194 | MS.gene41906:intron | 40.0% | |
GTTGCAGACATAGATAGTTC+TGG | + | chr7.4:20254281-20254300 | None:intergenic | 40.0% | |
TGTTGTGGTTGAGAAAACTG+TGG | - | chr7.4:20252472-20252491 | MS.gene41906:intron | 40.0% | |
TTCGCGTAAAGATCCATTTC+CGG | + | chr7.4:20253288-20253307 | None:intergenic | 40.0% | |
TTCTAGTGAATCCTTCATGC+AGG | - | chr7.4:20254398-20254417 | MS.gene41906:CDS | 40.0% | |
TTTCTTGATGAAAGCTGGTG+TGG | - | chr7.4:20252130-20252149 | MS.gene41906:intron | 40.0% | |
! | GCTAACCATGGAAGTCATTT+TGG | - | chr7.4:20253191-20253210 | MS.gene41906:intron | 40.0% |
! | TACACTTGGTGAGATGACTT+TGG | - | chr7.4:20252103-20252122 | MS.gene41906:intron | 40.0% |
! | TGATGCTGATGTTGTTGTTG+TGG | + | chr7.4:20252278-20252297 | None:intergenic | 40.0% |
! | TGTGTATGGTGTTAACGAAC+AGG | - | chr7.4:20252636-20252655 | MS.gene41906:intron | 40.0% |
! | TTTTGCAACCATGCTAACCA+TGG | - | chr7.4:20253179-20253198 | MS.gene41906:intron | 40.0% |
! | TTTTTCCTGCCATCTTGTGA+AGG | - | chr7.4:20252802-20252821 | MS.gene41906:intron | 40.0% |
!! | AGATCACCAGAAAGTGTCAA+TGG | + | chr7.4:20252010-20252029 | None:intergenic | 40.0% |
!! | AGTAACCTTTGAAGTCATGG+AGG | + | chr7.4:20253814-20253833 | None:intergenic | 40.0% |
!!! | GACTGGTTTTGCAGGTTATA+TGG | - | chr7.4:20252319-20252338 | MS.gene41906:intron | 40.0% |
AGCTCAGCAATCTAATGGGA+TGG | + | chr7.4:20253483-20253502 | None:intergenic | 45.0% | |
AGTGATGGTTACATGCAGCA+TGG | - | chr7.4:20251956-20251975 | MS.gene41906:intron | 45.0% | |
ATACATCCCAGCATGGTCAT+TGG | - | chr7.4:20252222-20252241 | MS.gene41906:intron | 45.0% | |
ATCCCATTAGATTGCTGAGC+TGG | - | chr7.4:20253482-20253501 | MS.gene41906:intron | 45.0% | |
ATGCTGCATGTAACCATCAC+TGG | + | chr7.4:20251957-20251976 | None:intergenic | 45.0% | |
CACAAACTCAAGGTCGGAAA+AGG | - | chr7.4:20252438-20252457 | MS.gene41906:intron | 45.0% | |
CACCATTGCTTCAGTGTATC+CGG | + | chr7.4:20252378-20252397 | None:intergenic | 45.0% | |
CACTCATTGCCTTCACAAGA+TGG | + | chr7.4:20252814-20252833 | None:intergenic | 45.0% | |
CATCTTGTGAAGGCAATGAG+TGG | - | chr7.4:20252812-20252831 | MS.gene41906:intron | 45.0% | |
GATAGGAGAACAGCTACACT+TGG | - | chr7.4:20252089-20252108 | MS.gene41906:intron | 45.0% | |
GCTCAGCAATCTAATGGGAT+GGG | + | chr7.4:20253482-20253501 | None:intergenic | 45.0% | |
TAATGAGGACTTCAACTGGC+CGG | - | chr7.4:20252848-20252867 | MS.gene41906:intron | 45.0% | |
TCTCTCTATCTCCTGCATGA+AGG | + | chr7.4:20254412-20254431 | None:intergenic | 45.0% | |
TCTGTCCTCCATGACTTCAA+AGG | - | chr7.4:20253806-20253825 | MS.gene41906:CDS | 45.0% | |
TGGTTGAGAAAACTGTGGAG+AGG | - | chr7.4:20252477-20252496 | MS.gene41906:intron | 45.0% | |
TTACATGCAGCATGGTCAAC+TGG | - | chr7.4:20251964-20251983 | MS.gene41906:intron | 45.0% | |
TTCTGCGAAGCTGATGCTTA+GGG | + | chr7.4:20254461-20254480 | None:intergenic | 45.0% | |
TTGAGAAAACTGTGGAGAGG+AGG | - | chr7.4:20252480-20252499 | MS.gene41906:intron | 45.0% | |
TTTCTCAACCACAACACCAG+AGG | + | chr7.4:20252468-20252487 | None:intergenic | 45.0% | |
! | ACTTGGTGAGATGACTTTGG+AGG | - | chr7.4:20252106-20252125 | MS.gene41906:intron | 45.0% |
! | AGGTTATATGGCTGGTCATG+TGG | - | chr7.4:20252331-20252350 | MS.gene41906:intron | 45.0% |
! | GGTTTTGCAGGTTATATGGC+TGG | - | chr7.4:20252323-20252342 | MS.gene41906:intron | 45.0% |
! | TGTGGTTCAACAGCCTGTTT+TGG | - | chr7.4:20252349-20252368 | MS.gene41906:intron | 45.0% |
!! | ACAGAAGAAGAGTGCTAGTC+AGG | - | chr7.4:20252067-20252086 | MS.gene41906:intron | 45.0% |
!! | AGAAGAGTGCTAGTCAGGAT+AGG | - | chr7.4:20252072-20252091 | MS.gene41906:intron | 45.0% |
!! | TTGGATTCTGGAACCAGTGA+TGG | - | chr7.4:20251941-20251960 | MS.gene41906:intron | 45.0% |
ACAGGCTTACACACAAGAGC+TGG | - | chr7.4:20252654-20252673 | MS.gene41906:intron | 50.0% | |
ACTGCATCCAATGACCATGC+TGG | + | chr7.4:20252232-20252251 | None:intergenic | 50.0% | |
ACTGGAACTTTGGCTAGGGA+AGG | - | chr7.4:20251788-20251807 | MS.gene41906:CDS | 50.0% | |
AGGTACTCCATAGTCCAGCT+AGG | + | chr7.4:20254036-20254055 | None:intergenic | 50.0% | |
CATTGCCTTCACAAGATGGC+AGG | + | chr7.4:20252810-20252829 | None:intergenic | 50.0% | |
CTGAAGCTGCTCAAGGTTCT+GGG | - | chr7.4:20251918-20251937 | MS.gene41906:intron | 50.0% | |
CTGCATCCAATGACCATGCT+GGG | + | chr7.4:20252231-20252250 | None:intergenic | 50.0% | |
GTGTATCCGGCATCCAAAAC+AGG | + | chr7.4:20252365-20252384 | None:intergenic | 50.0% | |
GTTCTGCGAAGCTGATGCTT+AGG | + | chr7.4:20254462-20254481 | None:intergenic | 50.0% | |
GTTGTGGTTGCTGCACTGAA+GGG | + | chr7.4:20252262-20252281 | None:intergenic | 50.0% | |
TGCCGGATACACTGAAGCAA+TGG | - | chr7.4:20252373-20252392 | MS.gene41906:intron | 50.0% | |
TGTTGTGGTTGCTGCACTGA+AGG | + | chr7.4:20252263-20252282 | None:intergenic | 50.0% | |
! | AGCATGGTCAACTGGCTTCT+GGG | - | chr7.4:20251972-20251991 | MS.gene41906:intron | 50.0% |
! | TCTGAAGCTGCTCAAGGTTC+TGG | - | chr7.4:20251917-20251936 | MS.gene41906:intron | 50.0% |
! | TGGACATCTGAAGCTGCTCA+AGG | - | chr7.4:20251911-20251930 | MS.gene41906:intron | 50.0% |
!! | CAACAGCCTGTTTTGGATGC+CGG | - | chr7.4:20252356-20252375 | MS.gene41906:intron | 50.0% |
!! | CAAGGTTCTGGGTTGGATTC+TGG | - | chr7.4:20251929-20251948 | MS.gene41906:intron | 50.0% |
AGCTGATGCTTAGGGTCTGG+TGG | + | chr7.4:20254453-20254472 | None:intergenic | 55.0% | |
CGAAGCTGATGCTTAGGGTC+TGG | + | chr7.4:20254456-20254475 | None:intergenic | 55.0% | |
GTTGCTGCACTGAAGGGACT+TGG | + | chr7.4:20252256-20252275 | None:intergenic | 55.0% | |
TGATGCTTAGGGTCTGGTGG+TGG | + | chr7.4:20254450-20254469 | None:intergenic | 55.0% | |
! | AAGGGTTGCCTCTGGTGTTG+TGG | - | chr7.4:20252457-20252476 | MS.gene41906:intron | 55.0% |
! | CAGCATGGTCAACTGGCTTC+TGG | - | chr7.4:20251971-20251990 | MS.gene41906:intron | 55.0% |
!! | AGCTGCTCAAGGTTCTGGGT+TGG | - | chr7.4:20251922-20251941 | MS.gene41906:intron | 55.0% |
CTGTGGAGAGGAGGCAGAAG+AGG | - | chr7.4:20252489-20252508 | MS.gene41906:intron | 60.0% | |
GGTCGGAAAAGGGTTGCCTC+TGG | - | chr7.4:20252449-20252468 | MS.gene41906:intron | 60.0% | |
!! | GGGTCTGGTGGTGGCATACT+TGG | + | chr7.4:20254441-20254460 | None:intergenic | 60.0% |
!! | TCGGTCGCGGGCTAGAAAAC+AGG | - | chr7.4:20252538-20252557 | MS.gene41906:intron | 60.0% |
GGAATCTGCAGCTCGGTCGC+GGG | - | chr7.4:20252526-20252545 | MS.gene41906:intron | 65.0% | |
GGGAATCTGCAGCTCGGTCG+CGG | - | chr7.4:20252525-20252544 | MS.gene41906:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 20251752 | 20254500 | 20251752 | ID=MS.gene41906 |
chr7.4 | mRNA | 20251752 | 20254500 | 20251752 | ID=MS.gene41906.t1;Parent=MS.gene41906 |
chr7.4 | exon | 20254201 | 20254500 | 20254201 | ID=MS.gene41906.t1.exon1;Parent=MS.gene41906.t1 |
chr7.4 | CDS | 20254201 | 20254500 | 20254201 | ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1 |
chr7.4 | exon | 20253693 | 20254163 | 20253693 | ID=MS.gene41906.t1.exon2;Parent=MS.gene41906.t1 |
chr7.4 | CDS | 20253693 | 20254163 | 20253693 | ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1 |
chr7.4 | exon | 20253523 | 20253594 | 20253523 | ID=MS.gene41906.t1.exon3;Parent=MS.gene41906.t1 |
chr7.4 | CDS | 20253523 | 20253594 | 20253523 | ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1 |
chr7.4 | exon | 20251752 | 20251832 | 20251752 | ID=MS.gene41906.t1.exon4;Parent=MS.gene41906.t1 |
chr7.4 | CDS | 20251752 | 20251832 | 20251752 | ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1 |
Gene Sequence |
Protein sequence |