AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41906.t1 MTR_7g088090 95.000 320 3 1 1 307 1 320 0.0 619
MS.gene41906.t1 MTR_6g026800 59.337 332 99 8 1 307 1 321 8.64e-109 319
MS.gene41906.t1 MTR_3g010660 46.708 319 123 8 16 305 20 320 4.38e-79 243
MS.gene41906.t1 MTR_8g043960 45.806 310 132 7 15 307 23 313 8.15e-76 234
MS.gene41906.t1 MTR_2g086390 31.208 298 126 10 19 285 11 260 1.03e-24 101
MS.gene41906.t1 MTR_2g086390 30.479 292 125 8 19 280 11 254 4.59e-24 99.4
MS.gene41906.t1 MTR_2g086340 33.447 293 136 10 17 280 23 285 1.78e-19 87.4
MS.gene41906.t1 MTR_5g088230 47.328 131 62 3 181 305 138 267 2.31e-19 86.3
MS.gene41906.t1 MTR_5g088230 39.200 125 51 2 16 121 22 140 1.48e-15 75.5
MS.gene41906.t1 MTR_5g088230 47.328 131 62 3 181 305 133 262 2.69e-19 85.9
MS.gene41906.t1 MTR_5g088230 39.200 125 51 2 16 121 17 135 1.44e-15 75.5
MS.gene41906.t1 MTR_4g085910 40.310 129 59 3 16 128 18 144 1.14e-18 85.9
MS.gene41906.t1 MTR_4g085910 63.380 71 22 1 209 279 278 344 7.59e-17 80.5
MS.gene41906.t1 MTR_3g101780 37.333 150 66 3 2 133 14 153 5.42e-18 84.3
MS.gene41906.t1 MTR_3g101780 67.213 61 19 1 222 282 339 398 5.76e-17 81.3
MS.gene41906.t1 MTR_5g060990 28.947 304 156 9 16 270 12 304 6.59e-18 82.8
MS.gene41906.t1 MTR_7g015990 76.596 47 8 1 236 279 120 166 5.50e-13 67.0
MS.gene41906.t1 MTR_8g075130 62.963 54 17 1 229 279 98 151 1.80e-12 65.1
MS.gene41906.t1 MTR_4g094390 60.714 56 22 0 223 278 117 172 6.83e-12 63.9
MS.gene41906.t1 MTR_5g022780 64.286 56 8 1 236 279 166 221 1.17e-11 63.9
MS.gene41906.t1 MTR_7g104480 28.723 188 87 4 22 178 45 216 1.63e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41906.t1 AT3G56850 52.888 329 101 10 1 307 1 297 1.42e-92 277
MS.gene41906.t1 AT2G41070 46.319 326 92 11 1 307 1 262 4.24e-74 228
MS.gene41906.t1 AT2G41070 46.319 326 92 11 1 307 1 262 4.24e-74 228
MS.gene41906.t1 AT2G41070 46.319 326 92 11 1 307 1 262 4.24e-74 228
MS.gene41906.t1 AT2G41070 46.319 326 92 11 1 307 10 271 4.84e-74 229
MS.gene41906.t1 AT2G41070 44.482 299 83 11 1 280 1 235 5.23e-59 189
MS.gene41906.t1 AT1G49720 36.170 188 80 5 16 177 23 196 8.74e-21 92.0
MS.gene41906.t1 AT1G49720 36.170 188 80 5 16 177 23 196 1.12e-20 91.7
MS.gene41906.t1 AT1G49720 36.170 188 80 5 16 177 23 196 1.12e-20 91.7
MS.gene41906.t1 AT3G44460 32.877 292 139 8 16 282 35 294 4.52e-20 89.4
MS.gene41906.t1 AT3G19290 41.429 140 51 3 16 124 34 173 5.35e-20 90.1
MS.gene41906.t1 AT3G19290 51.316 76 28 2 204 279 329 395 1.38e-13 71.2
MS.gene41906.t1 AT3G19290 41.429 140 51 3 16 124 34 173 5.47e-20 90.1
MS.gene41906.t1 AT3G19290 41.429 140 51 3 16 124 34 173 6.31e-20 89.7
MS.gene41906.t1 AT3G19290 51.316 76 28 2 204 279 329 395 1.63e-13 70.9
MS.gene41906.t1 AT3G19290 41.429 140 51 3 16 124 34 173 6.31e-20 89.7
MS.gene41906.t1 AT3G19290 51.316 76 28 2 204 279 329 395 1.63e-13 70.9
MS.gene41906.t1 AT3G19290 41.429 140 51 3 16 124 34 173 6.35e-20 89.7
MS.gene41906.t1 AT3G19290 51.316 76 28 2 204 279 329 395 1.67e-13 70.9
MS.gene41906.t1 AT1G45249 52.252 111 38 5 204 306 312 415 1.47e-19 88.6
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.20e-13 71.2
MS.gene41906.t1 AT1G45249 52.252 111 38 5 204 306 327 430 1.64e-19 88.6
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 36 203 1.13e-13 71.6
MS.gene41906.t1 AT1G45249 52.252 111 38 5 204 306 327 430 1.64e-19 88.6
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 36 203 1.13e-13 71.6
MS.gene41906.t1 AT2G36270 70.149 67 18 2 220 285 341 406 2.78e-18 85.1
MS.gene41906.t1 AT2G36270 70.149 67 18 2 220 285 341 406 2.92e-18 85.1
MS.gene41906.t1 AT2G36270 70.149 67 18 2 220 285 341 406 2.92e-18 85.1
MS.gene41906.t1 AT4G34000 48.113 106 44 3 184 279 312 416 2.22e-17 82.4
MS.gene41906.t1 AT4G35900 59.155 71 28 1 237 307 216 285 2.61e-17 80.9
MS.gene41906.t1 AT4G34000 48.113 106 44 3 184 279 312 416 2.67e-17 82.4
MS.gene41906.t1 AT4G34000 48.113 106 44 3 184 279 312 416 2.67e-17 82.4
MS.gene41906.t1 AT4G34000 48.113 106 44 3 184 279 312 416 2.67e-17 82.4
MS.gene41906.t1 AT1G45249 47.541 122 38 6 204 306 312 426 1.19e-16 80.5
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.28e-13 71.2
MS.gene41906.t1 AT2G17770 55.556 72 31 1 236 307 125 195 4.04e-15 72.8
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.64e-13 70.9
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.64e-13 70.9
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.64e-13 70.9
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 1.64e-13 70.9
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 2.10e-13 70.5
MS.gene41906.t1 AT1G45249 34.091 176 76 6 16 159 21 188 2.10e-13 70.5
MS.gene41906.t1 AT1G03970 57.576 66 26 1 219 284 171 234 7.00e-12 65.1
MS.gene41906.t1 AT5G42910 43.925 107 50 5 205 304 264 367 2.17e-11 64.3
MS.gene41906.t1 AT5G44080 47.674 86 33 2 231 304 227 312 2.49e-11 63.9

Find 79 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCAGCTTGGAAATTT+AGG 0.083769 7.4:-20254388 MS.gene41906:CDS
CAGCATGGTCAACTGGCTTC+TGG 0.131375 7.4:-20254259 MS.gene41906:CDS
ATGAATCCATTGACACTTTC+TGG 0.149546 7.4:-20254229 MS.gene41906:CDS
CAAGGTTCTGGGTTGGATTC+TGG 0.152919 7.4:-20254301 MS.gene41906:CDS
TCTGAAGCTGCTCAAGGTTC+TGG 0.221535 7.4:-20254313 MS.gene41906:CDS
AAAATCAGCTTGGAAATTTA+GGG 0.258433 7.4:-20254387 MS.gene41906:CDS
TGTGGTTCAACAGCCTGTTT+TGG 0.318849 7.4:-20253881 MS.gene41906:CDS
GTTCTGCGAAGCTGATGCTT+AGG 0.411723 7.4:+20251771 None:intergenic
GGGTCTGGTGGTGGCATACT+TGG 0.413639 7.4:+20251792 None:intergenic
ATCTAGATTCATGCTTCCTA+AGG 0.414294 7.4:+20254360 None:intergenic
CACAAACTCAAGGTCGGAAA+AGG 0.415817 7.4:-20253792 MS.gene41906:CDS
TCGGTCGCGGGCTAGAAAAC+AGG 0.419550 7.4:-20253692 MS.gene41906:intron
CACCATTGCTTCAGTGTATC+CGG 0.423926 7.4:+20253855 None:intergenic
CTGAAGCTGCTCAAGGTTCT+GGG 0.427919 7.4:-20254312 MS.gene41906:CDS
AGAACAAAAGACTGGAACTT+TGG 0.437900 7.4:-20254452 MS.gene41906:CDS
TTACATGCAGCATGGTCAAC+TGG 0.446389 7.4:-20254266 MS.gene41906:CDS
ATGAGTTGCTGAAGAGTTTG+TGG 0.448987 7.4:-20254339 MS.gene41906:CDS
GTGTATCCGGCATCCAAAAC+AGG 0.451089 7.4:+20253868 None:intergenic
GGGAATCTGCAGCTCGGTCG+CGG 0.454529 7.4:-20253705 MS.gene41906:CDS
AGCATGGTCAACTGGCTTCT+GGG 0.456125 7.4:-20254258 MS.gene41906:CDS
TTTGCAATAAAGTCTTCAAA+GGG 0.467582 7.4:+20251737 None:intergenic
ATACATCCCAGCATGGTCAT+TGG 0.471305 7.4:-20254008 MS.gene41906:CDS
AGCTGCTCAAGGTTCTGGGT+TGG 0.476833 7.4:-20254308 MS.gene41906:CDS
TTCTGCGAAGCTGATGCTTA+GGG 0.478401 7.4:+20251772 None:intergenic
CTGTGGAGAGGAGGCAGAAG+AGG 0.493448 7.4:-20253741 MS.gene41906:CDS
ACTTGGTGAGATGACTTTGG+AGG 0.493788 7.4:-20254124 MS.gene41906:CDS
TGATGCTGATGTTGTTGTTG+TGG 0.499071 7.4:+20253955 None:intergenic
AGTGAGGATAATGCTATGTC+AGG 0.499581 7.4:-20254060 MS.gene41906:CDS
GAGGATTTCTTGATGAAAGC+TGG 0.506897 7.4:-20254105 MS.gene41906:CDS
GGAAATTTAGGGAAACCCTT+AGG 0.509333 7.4:-20254376 MS.gene41906:CDS
AGATCACCAGAAAGTGTCAA+TGG 0.510245 7.4:+20254223 None:intergenic
TGTTGTGGTTGCTGCACTGA+AGG 0.512843 7.4:+20253970 None:intergenic
GATGAGGTTCAAAATCAGCT+TGG 0.519734 7.4:-20254397 MS.gene41906:CDS
CATCAGAATAATATGATGAC+TGG 0.520032 7.4:-20253928 MS.gene41906:CDS
GGTCGGAAAAGGGTTGCCTC+TGG 0.520884 7.4:-20253781 MS.gene41906:CDS
GGAATCTGCAGCTCGGTCGC+GGG 0.521215 7.4:-20253704 MS.gene41906:CDS
AAGGGTTGCCTCTGGTGTTG+TGG 0.526242 7.4:-20253773 MS.gene41906:CDS
TACACTTGGTGAGATGACTT+TGG 0.528431 7.4:-20254127 MS.gene41906:CDS
CGAAGCTGATGCTTAGGGTC+TGG 0.529237 7.4:+20251777 None:intergenic
GTTGTGGTTGCTGCACTGAA+GGG 0.529499 7.4:+20253971 None:intergenic
TGGACATCTGAAGCTGCTCA+AGG 0.541485 7.4:-20254319 MS.gene41906:CDS
ACAGGCTTACACACAAGAGC+TGG 0.542704 7.4:-20253576 MS.gene41906:intron
ATGCTGCATGTAACCATCAC+TGG 0.546349 7.4:+20254276 None:intergenic
ACAAACTCAAGGTCGGAAAA+GGG 0.554545 7.4:-20253791 MS.gene41906:CDS
AAAAGACTGGAACTTTGGCT+AGG 0.557530 7.4:-20254447 MS.gene41906:CDS
GCAATCCAAGAACAAAAGAC+TGG 0.559028 7.4:-20254460 MS.gene41906:CDS
TGATGCTTAGGGTCTGGTGG+TGG 0.567579 7.4:+20251783 None:intergenic
GTACAATCTCACATTTGATG+AGG 0.569368 7.4:-20254413 MS.gene41906:CDS
TCTAGATTCATGCTTCCTAA+GGG 0.569459 7.4:+20254361 None:intergenic
AGGTTATATGGCTGGTCATG+TGG 0.572563 7.4:-20253899 MS.gene41906:CDS
GTTGCTGCACTGAAGGGACT+TGG 0.573952 7.4:+20253977 None:intergenic
TAGTAAGAAAACTATTGATG+AGG 0.581872 7.4:-20254200 MS.gene41906:intron
ACTGCATCCAATGACCATGC+TGG 0.582214 7.4:+20254001 None:intergenic
TTGGATTCTGGAACCAGTGA+TGG 0.584696 7.4:-20254289 MS.gene41906:CDS
ACTTAGAAGAAGAGAATGAA+AGG 0.584805 7.4:-20253538 MS.gene41906:CDS
CAGATACACAAACTCAAGGT+CGG 0.585416 7.4:-20253798 MS.gene41906:CDS
AGGATAATGCTATGTCAGGA+AGG 0.586500 7.4:-20254056 MS.gene41906:CDS
CACTGAATCATTTCCTAGTG+AGG 0.587073 7.4:-20254076 MS.gene41906:CDS
AGCTGATGCTTAGGGTCTGG+TGG 0.587120 7.4:+20251780 None:intergenic
AAAGACTGGAACTTTGGCTA+GGG 0.596011 7.4:-20254446 MS.gene41906:CDS
CTGCATCCAATGACCATGCT+GGG 0.608106 7.4:+20254002 None:intergenic
ACTGGAACTTTGGCTAGGGA+AGG 0.612277 7.4:-20254442 MS.gene41906:CDS
TTGAGAAAACTGTGGAGAGG+AGG 0.618222 7.4:-20253750 MS.gene41906:CDS
GAAGTAGCTATTAAAGAAGA+CGG 0.621434 7.4:+20253823 None:intergenic
AAAATAGGGAATCTGCAGCT+CGG 0.624873 7.4:-20253711 MS.gene41906:CDS
TTGAAAATGGGATCTCATGG+AGG 0.632717 7.4:-20254484 None:intergenic
GATAGGAGAACAGCTACACT+TGG 0.637974 7.4:-20254141 MS.gene41906:CDS
TCATCAGATACACAAACTCA+AGG 0.638560 7.4:-20253802 MS.gene41906:CDS
TTTCTTGATGAAAGCTGGTG+TGG 0.647086 7.4:-20254100 MS.gene41906:CDS
CTCACTAGGAAATGATTCAG+TGG 0.653229 7.4:+20254077 None:intergenic
TTTCTCAACCACAACACCAG+AGG 0.653421 7.4:+20253765 None:intergenic
GGATAATGCTATGTCAGGAA+GGG 0.659996 7.4:-20254055 MS.gene41906:CDS
TGCCGGATACACTGAAGCAA+TGG 0.661929 7.4:-20253857 MS.gene41906:CDS
GACATAGCATTATCCTCACT+AGG 0.666638 7.4:+20254063 None:intergenic
AGTGATGGTTACATGCAGCA+TGG 0.680149 7.4:-20254274 MS.gene41906:CDS
CAACAAAATACATCCCAGCA+TGG 0.680747 7.4:-20254015 MS.gene41906:CDS
TGGTTGAGAAAACTGTGGAG+AGG 0.682616 7.4:-20253753 MS.gene41906:CDS
TTGCAATAAAGTCTTCAAAG+GGG 0.695239 7.4:+20251738 None:intergenic
TGTTGTGGTTGAGAAAACTG+TGG 0.749971 7.4:-20253758 MS.gene41906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATAATAACTAACCA+GGG + chr7.4:20253455-20253474 None:intergenic 15.0%
!!! AGTTTTCATTATTTCAAAAT+TGG - chr7.4:20253548-20253567 MS.gene41906:CDS 15.0%
!!! ATTTTGTTAAATCATATAGA+AGG - chr7.4:20253249-20253268 MS.gene41906:intron 15.0%
!!! GTTTTCATTATTTCAAAATT+GGG - chr7.4:20253549-20253568 MS.gene41906:CDS 15.0%
!! AAAACTTCAAGAAAGAATAA+AGG + chr7.4:20252965-20252984 None:intergenic 20.0%
!! AATAATAATGCTAACTGAAA+AGG + chr7.4:20252942-20252961 None:intergenic 20.0%
!! ATTCCTAATCGAATTAATTA+AGG + chr7.4:20254303-20254322 None:intergenic 20.0%
!! CAAAAATATGATTCAATAAC+TGG - chr7.4:20252912-20252931 MS.gene41906:intron 20.0%
!! CAATATTATAATAACTAACC+AGG + chr7.4:20253456-20253475 None:intergenic 20.0%
!! TATGATTTAACAAAATTGAC+TGG + chr7.4:20253245-20253264 None:intergenic 20.0%
!! TCTATATAATAAAAACGATG+TGG - chr7.4:20253960-20253979 MS.gene41906:CDS 20.0%
!!! TAAATCATATAGAAGGTTTT+TGG - chr7.4:20253256-20253275 MS.gene41906:intron 20.0%
!!! TATATAGATGTTTTCAGAAA+TGG + chr7.4:20253948-20253967 None:intergenic 20.0%
! AAAATCAGCTTGGAAATTTA+GGG - chr7.4:20251843-20251862 MS.gene41906:intron 25.0%
! AAGAAATAGAATGTTTACAC+TGG - chr7.4:20252880-20252899 MS.gene41906:intron 25.0%
! AGAAGAGGATGATTAAAAAT+AGG - chr7.4:20252504-20252523 MS.gene41906:intron 25.0%
! ATATTAGCATTGCAAAACAA+TGG + chr7.4:20253128-20253147 None:intergenic 25.0%
! ATGACATATATTTGTGTGTA+TGG - chr7.4:20252622-20252641 MS.gene41906:intron 25.0%
! ATGTCACAATAAAAGCTAAA+TGG + chr7.4:20253359-20253378 None:intergenic 25.0%
! CAAAATAGAGATTCATGTTA+AGG + chr7.4:20252991-20253010 None:intergenic 25.0%
! CAACCTTAATTAATTCGATT+AGG - chr7.4:20254297-20254316 MS.gene41906:CDS 25.0%
! CAGGAAAGGATAAATATTAA+TGG + chr7.4:20253754-20253773 None:intergenic 25.0%
! GAAGAGGATGATTAAAAATA+GGG - chr7.4:20252505-20252524 MS.gene41906:intron 25.0%
! TAGTAAGAAAACTATTGATG+AGG - chr7.4:20252030-20252049 MS.gene41906:intron 25.0%
!!! TGACTTTGTTTTTCTAAAGT+TGG - chr7.4:20253676-20253695 MS.gene41906:intron 25.0%
!!! TTTGTTTTGTTGAGAATTTG+TGG - chr7.4:20253871-20253890 MS.gene41906:CDS 25.0%
AAAGCAGAGATAAATGATCA+AGG + chr7.4:20254195-20254214 None:intergenic 30.0%
AACAATGTATGAAGTAGTAC+AGG + chr7.4:20253527-20253546 None:intergenic 30.0%
AACTAACAAAAGCTTGTGAT+AGG + chr7.4:20253714-20253733 None:intergenic 30.0%
ACTTAGAAGAAGAGAATGAA+AGG - chr7.4:20252692-20252711 MS.gene41906:intron 30.0%
AGAAAACTATTGATGAGGTT+TGG - chr7.4:20252035-20252054 MS.gene41906:intron 30.0%
AGACAGATCATAAAGCAAAA+AGG + chr7.4:20254056-20254075 None:intergenic 30.0%
CAAAATCAGCTTGGAAATTT+AGG - chr7.4:20251842-20251861 MS.gene41906:intron 30.0%
CATCAGAATAATATGATGAC+TGG - chr7.4:20252302-20252321 MS.gene41906:intron 30.0%
CATTTATCTCTGCTTTATGT+AGG - chr7.4:20254199-20254218 MS.gene41906:intron 30.0%
CTATACTTTATTCCTTTGTC+TGG - chr7.4:20252759-20252778 MS.gene41906:intron 30.0%
GAAGTAGCTATTAAAGAAGA+CGG + chr7.4:20252410-20252429 None:intergenic 30.0%
GGTTGAAATGTTAGTTAATG+AGG - chr7.4:20252833-20252852 MS.gene41906:intron 30.0%
TAGTGCCAAAACAAGAAATT+AGG + chr7.4:20253589-20253608 None:intergenic 30.0%
TCCAAAACAATATTCAGGAA+AGG + chr7.4:20253768-20253787 None:intergenic 30.0%
! AAACGATGTGGTAATTTTGA+TGG - chr7.4:20253972-20253991 MS.gene41906:CDS 30.0%
! ACAAGCTTTTGTTAGTTGAT+TGG - chr7.4:20253717-20253736 MS.gene41906:CDS 30.0%
! TCCTTTCCTGAATATTGTTT+TGG - chr7.4:20253764-20253783 MS.gene41906:CDS 30.0%
! TGTTTTCAGAAATGGAATGA+AGG + chr7.4:20253940-20253959 None:intergenic 30.0%
! TTTGCTTATTAAGCTTTGTG+TGG - chr7.4:20253007-20253026 MS.gene41906:intron 30.0%
!! TAAAGTAACCTTTGAAGTCA+TGG + chr7.4:20253817-20253836 None:intergenic 30.0%
!! TAGAAAGTACTCTGGTTTAA+TGG - chr7.4:20253646-20253665 MS.gene41906:intron 30.0%
!!! TTCCTGAATATTGTTTTGGA+GGG - chr7.4:20253768-20253787 MS.gene41906:CDS 30.0%
!!! TTTCCTGAATATTGTTTTGG+AGG - chr7.4:20253767-20253786 MS.gene41906:CDS 30.0%
ACTTCTGCATTGCATCAAAA+TGG + chr7.4:20253105-20253124 None:intergenic 35.0%
AGAACAAAAGACTGGAACTT+TGG - chr7.4:20251778-20251797 MS.gene41906:CDS 35.0%
AGATCAAATGAAAGCTATGC+AGG + chr7.4:20253428-20253447 None:intergenic 35.0%
ATCTAGATTCATGCTTCCTA+AGG + chr7.4:20251873-20251892 None:intergenic 35.0%
ATGAATCCATTGACACTTTC+TGG - chr7.4:20252001-20252020 MS.gene41906:intron 35.0%
CGAAAGTTTATGAGATACTC+TGG - chr7.4:20253304-20253323 MS.gene41906:intron 35.0%
GAGTACTTTCTATCAAATGG+AGG + chr7.4:20253638-20253657 None:intergenic 35.0%
GTACAATCTCACATTTGATG+AGG - chr7.4:20251817-20251836 MS.gene41906:intron 35.0%
GTAGTACAGGATTGAACAAA+AGG + chr7.4:20253514-20253533 None:intergenic 35.0%
TACCCTCCAAAACAATATTC+AGG + chr7.4:20253773-20253792 None:intergenic 35.0%
TAGTTAATGAGGACTTCAAC+TGG - chr7.4:20252844-20252863 MS.gene41906:intron 35.0%
TCATCAGATACACAAACTCA+AGG - chr7.4:20252428-20252447 MS.gene41906:intron 35.0%
TCTAGATTCATGCTTCCTAA+GGG + chr7.4:20251872-20251891 None:intergenic 35.0%
TCTTTCCAAAATGACTTCCA+TGG + chr7.4:20253199-20253218 None:intergenic 35.0%
TTTCATTTGATCTTTCTCCC+TGG - chr7.4:20253435-20253454 MS.gene41906:intron 35.0%
! AAGTTCCAGTCTTTTGTTCT+TGG + chr7.4:20251778-20251797 None:intergenic 35.0%
! CCAGAGTACTTTCTATCAAA+TGG + chr7.4:20253641-20253660 None:intergenic 35.0%
! CTGATCTCTAGAAAGTGATT+TGG - chr7.4:20254338-20254357 MS.gene41906:CDS 35.0%
! TCTATTTCTTAAGCAAGCAC+CGG + chr7.4:20252870-20252889 None:intergenic 35.0%
! TTACTCTGATGTTGCTTGTT+TGG - chr7.4:20253155-20253174 MS.gene41906:intron 35.0%
!! CCATTTGATAGAAAGTACTC+TGG - chr7.4:20253638-20253657 MS.gene41906:intron 35.0%
!! CTGTGCCTAATTTCTTGTTT+TGG - chr7.4:20253581-20253600 MS.gene41906:intron 35.0%
!!! AATATGATGACTGGTTTTGC+AGG - chr7.4:20252311-20252330 MS.gene41906:intron 35.0%
!!! AGAAGGTTTTTGGCTTTAAC+CGG - chr7.4:20253266-20253285 MS.gene41906:intron 35.0%
!!! TTTTTGGCTTTAACCGGAAA+TGG - chr7.4:20253272-20253291 MS.gene41906:intron 35.0%
AAAAGACTGGAACTTTGGCT+AGG - chr7.4:20251783-20251802 MS.gene41906:CDS 40.0%
AAAATAGGGAATCTGCAGCT+CGG - chr7.4:20252519-20252538 MS.gene41906:intron 40.0%
AAACCAGCTCAGCAATCTAA+TGG + chr7.4:20253488-20253507 None:intergenic 40.0%
AAAGACTGGAACTTTGGCTA+GGG - chr7.4:20251784-20251803 MS.gene41906:CDS 40.0%
AACCAGCTCAGCAATCTAAT+GGG + chr7.4:20253487-20253506 None:intergenic 40.0%
AAGCTCAAACTCTATTCTCG+TGG + chr7.4:20253917-20253936 None:intergenic 40.0%
AATGACTTCCATGGTTAGCA+TGG + chr7.4:20253190-20253209 None:intergenic 40.0%
ACAAACTCAAGGTCGGAAAA+GGG - chr7.4:20252439-20252458 MS.gene41906:intron 40.0%
ACAAATGTCACACCAGACAA+AGG + chr7.4:20252774-20252793 None:intergenic 40.0%
AGATAAACCTAGCTGGACTA+TGG - chr7.4:20254026-20254045 MS.gene41906:CDS 40.0%
AGGATAATGCTATGTCAGGA+AGG - chr7.4:20252174-20252193 MS.gene41906:intron 40.0%
AGTGAGGATAATGCTATGTC+AGG - chr7.4:20252170-20252189 MS.gene41906:intron 40.0%
ATGAGTTGCTGAAGAGTTTG+TGG - chr7.4:20251891-20251910 MS.gene41906:intron 40.0%
CAACAAAATACATCCCAGCA+TGG - chr7.4:20252215-20252234 MS.gene41906:intron 40.0%
CACTGAATCATTTCCTAGTG+AGG - chr7.4:20252154-20252173 MS.gene41906:intron 40.0%
CAGATACACAAACTCAAGGT+CGG - chr7.4:20252432-20252451 MS.gene41906:intron 40.0%
CATTAGTGTGCAGTTTGTCT+TGG - chr7.4:20254078-20254097 MS.gene41906:CDS 40.0%
CTCACTAGGAAATGATTCAG+TGG + chr7.4:20252156-20252175 None:intergenic 40.0%
GAAAGTGAGATAAACCTAGC+TGG - chr7.4:20254019-20254038 MS.gene41906:CDS 40.0%
GACATAGCATTATCCTCACT+AGG + chr7.4:20252170-20252189 None:intergenic 40.0%
GAGGATTTCTTGATGAAAGC+TGG - chr7.4:20252125-20252144 MS.gene41906:intron 40.0%
GATGAGGTTCAAAATCAGCT+TGG - chr7.4:20251833-20251852 MS.gene41906:intron 40.0%
GCAATCCAAGAACAAAAGAC+TGG - chr7.4:20251770-20251789 MS.gene41906:CDS 40.0%
GGAAATTTAGGGAAACCCTT+AGG - chr7.4:20251854-20251873 MS.gene41906:intron 40.0%
GGATAATGCTATGTCAGGAA+GGG - chr7.4:20252175-20252194 MS.gene41906:intron 40.0%
GTTGCAGACATAGATAGTTC+TGG + chr7.4:20254281-20254300 None:intergenic 40.0%
TGTTGTGGTTGAGAAAACTG+TGG - chr7.4:20252472-20252491 MS.gene41906:intron 40.0%
TTCGCGTAAAGATCCATTTC+CGG + chr7.4:20253288-20253307 None:intergenic 40.0%
TTCTAGTGAATCCTTCATGC+AGG - chr7.4:20254398-20254417 MS.gene41906:CDS 40.0%
TTTCTTGATGAAAGCTGGTG+TGG - chr7.4:20252130-20252149 MS.gene41906:intron 40.0%
! GCTAACCATGGAAGTCATTT+TGG - chr7.4:20253191-20253210 MS.gene41906:intron 40.0%
! TACACTTGGTGAGATGACTT+TGG - chr7.4:20252103-20252122 MS.gene41906:intron 40.0%
! TGATGCTGATGTTGTTGTTG+TGG + chr7.4:20252278-20252297 None:intergenic 40.0%
! TGTGTATGGTGTTAACGAAC+AGG - chr7.4:20252636-20252655 MS.gene41906:intron 40.0%
! TTTTGCAACCATGCTAACCA+TGG - chr7.4:20253179-20253198 MS.gene41906:intron 40.0%
! TTTTTCCTGCCATCTTGTGA+AGG - chr7.4:20252802-20252821 MS.gene41906:intron 40.0%
!! AGATCACCAGAAAGTGTCAA+TGG + chr7.4:20252010-20252029 None:intergenic 40.0%
!! AGTAACCTTTGAAGTCATGG+AGG + chr7.4:20253814-20253833 None:intergenic 40.0%
!!! GACTGGTTTTGCAGGTTATA+TGG - chr7.4:20252319-20252338 MS.gene41906:intron 40.0%
AGCTCAGCAATCTAATGGGA+TGG + chr7.4:20253483-20253502 None:intergenic 45.0%
AGTGATGGTTACATGCAGCA+TGG - chr7.4:20251956-20251975 MS.gene41906:intron 45.0%
ATACATCCCAGCATGGTCAT+TGG - chr7.4:20252222-20252241 MS.gene41906:intron 45.0%
ATCCCATTAGATTGCTGAGC+TGG - chr7.4:20253482-20253501 MS.gene41906:intron 45.0%
ATGCTGCATGTAACCATCAC+TGG + chr7.4:20251957-20251976 None:intergenic 45.0%
CACAAACTCAAGGTCGGAAA+AGG - chr7.4:20252438-20252457 MS.gene41906:intron 45.0%
CACCATTGCTTCAGTGTATC+CGG + chr7.4:20252378-20252397 None:intergenic 45.0%
CACTCATTGCCTTCACAAGA+TGG + chr7.4:20252814-20252833 None:intergenic 45.0%
CATCTTGTGAAGGCAATGAG+TGG - chr7.4:20252812-20252831 MS.gene41906:intron 45.0%
GATAGGAGAACAGCTACACT+TGG - chr7.4:20252089-20252108 MS.gene41906:intron 45.0%
GCTCAGCAATCTAATGGGAT+GGG + chr7.4:20253482-20253501 None:intergenic 45.0%
TAATGAGGACTTCAACTGGC+CGG - chr7.4:20252848-20252867 MS.gene41906:intron 45.0%
TCTCTCTATCTCCTGCATGA+AGG + chr7.4:20254412-20254431 None:intergenic 45.0%
TCTGTCCTCCATGACTTCAA+AGG - chr7.4:20253806-20253825 MS.gene41906:CDS 45.0%
TGGTTGAGAAAACTGTGGAG+AGG - chr7.4:20252477-20252496 MS.gene41906:intron 45.0%
TTACATGCAGCATGGTCAAC+TGG - chr7.4:20251964-20251983 MS.gene41906:intron 45.0%
TTCTGCGAAGCTGATGCTTA+GGG + chr7.4:20254461-20254480 None:intergenic 45.0%
TTGAGAAAACTGTGGAGAGG+AGG - chr7.4:20252480-20252499 MS.gene41906:intron 45.0%
TTTCTCAACCACAACACCAG+AGG + chr7.4:20252468-20252487 None:intergenic 45.0%
! ACTTGGTGAGATGACTTTGG+AGG - chr7.4:20252106-20252125 MS.gene41906:intron 45.0%
! AGGTTATATGGCTGGTCATG+TGG - chr7.4:20252331-20252350 MS.gene41906:intron 45.0%
! GGTTTTGCAGGTTATATGGC+TGG - chr7.4:20252323-20252342 MS.gene41906:intron 45.0%
! TGTGGTTCAACAGCCTGTTT+TGG - chr7.4:20252349-20252368 MS.gene41906:intron 45.0%
!! ACAGAAGAAGAGTGCTAGTC+AGG - chr7.4:20252067-20252086 MS.gene41906:intron 45.0%
!! AGAAGAGTGCTAGTCAGGAT+AGG - chr7.4:20252072-20252091 MS.gene41906:intron 45.0%
!! TTGGATTCTGGAACCAGTGA+TGG - chr7.4:20251941-20251960 MS.gene41906:intron 45.0%
ACAGGCTTACACACAAGAGC+TGG - chr7.4:20252654-20252673 MS.gene41906:intron 50.0%
ACTGCATCCAATGACCATGC+TGG + chr7.4:20252232-20252251 None:intergenic 50.0%
ACTGGAACTTTGGCTAGGGA+AGG - chr7.4:20251788-20251807 MS.gene41906:CDS 50.0%
AGGTACTCCATAGTCCAGCT+AGG + chr7.4:20254036-20254055 None:intergenic 50.0%
CATTGCCTTCACAAGATGGC+AGG + chr7.4:20252810-20252829 None:intergenic 50.0%
CTGAAGCTGCTCAAGGTTCT+GGG - chr7.4:20251918-20251937 MS.gene41906:intron 50.0%
CTGCATCCAATGACCATGCT+GGG + chr7.4:20252231-20252250 None:intergenic 50.0%
GTGTATCCGGCATCCAAAAC+AGG + chr7.4:20252365-20252384 None:intergenic 50.0%
GTTCTGCGAAGCTGATGCTT+AGG + chr7.4:20254462-20254481 None:intergenic 50.0%
GTTGTGGTTGCTGCACTGAA+GGG + chr7.4:20252262-20252281 None:intergenic 50.0%
TGCCGGATACACTGAAGCAA+TGG - chr7.4:20252373-20252392 MS.gene41906:intron 50.0%
TGTTGTGGTTGCTGCACTGA+AGG + chr7.4:20252263-20252282 None:intergenic 50.0%
! AGCATGGTCAACTGGCTTCT+GGG - chr7.4:20251972-20251991 MS.gene41906:intron 50.0%
! TCTGAAGCTGCTCAAGGTTC+TGG - chr7.4:20251917-20251936 MS.gene41906:intron 50.0%
! TGGACATCTGAAGCTGCTCA+AGG - chr7.4:20251911-20251930 MS.gene41906:intron 50.0%
!! CAACAGCCTGTTTTGGATGC+CGG - chr7.4:20252356-20252375 MS.gene41906:intron 50.0%
!! CAAGGTTCTGGGTTGGATTC+TGG - chr7.4:20251929-20251948 MS.gene41906:intron 50.0%
AGCTGATGCTTAGGGTCTGG+TGG + chr7.4:20254453-20254472 None:intergenic 55.0%
CGAAGCTGATGCTTAGGGTC+TGG + chr7.4:20254456-20254475 None:intergenic 55.0%
GTTGCTGCACTGAAGGGACT+TGG + chr7.4:20252256-20252275 None:intergenic 55.0%
TGATGCTTAGGGTCTGGTGG+TGG + chr7.4:20254450-20254469 None:intergenic 55.0%
! AAGGGTTGCCTCTGGTGTTG+TGG - chr7.4:20252457-20252476 MS.gene41906:intron 55.0%
! CAGCATGGTCAACTGGCTTC+TGG - chr7.4:20251971-20251990 MS.gene41906:intron 55.0%
!! AGCTGCTCAAGGTTCTGGGT+TGG - chr7.4:20251922-20251941 MS.gene41906:intron 55.0%
CTGTGGAGAGGAGGCAGAAG+AGG - chr7.4:20252489-20252508 MS.gene41906:intron 60.0%
GGTCGGAAAAGGGTTGCCTC+TGG - chr7.4:20252449-20252468 MS.gene41906:intron 60.0%
!! GGGTCTGGTGGTGGCATACT+TGG + chr7.4:20254441-20254460 None:intergenic 60.0%
!! TCGGTCGCGGGCTAGAAAAC+AGG - chr7.4:20252538-20252557 MS.gene41906:intron 60.0%
GGAATCTGCAGCTCGGTCGC+GGG - chr7.4:20252526-20252545 MS.gene41906:intron 65.0%
GGGAATCTGCAGCTCGGTCG+CGG - chr7.4:20252525-20252544 MS.gene41906:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 20251752 20254500 20251752 ID=MS.gene41906
chr7.4 mRNA 20251752 20254500 20251752 ID=MS.gene41906.t1;Parent=MS.gene41906
chr7.4 exon 20254201 20254500 20254201 ID=MS.gene41906.t1.exon1;Parent=MS.gene41906.t1
chr7.4 CDS 20254201 20254500 20254201 ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1
chr7.4 exon 20253693 20254163 20253693 ID=MS.gene41906.t1.exon2;Parent=MS.gene41906.t1
chr7.4 CDS 20253693 20254163 20253693 ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1
chr7.4 exon 20253523 20253594 20253523 ID=MS.gene41906.t1.exon3;Parent=MS.gene41906.t1
chr7.4 CDS 20253523 20253594 20253523 ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1
chr7.4 exon 20251752 20251832 20251752 ID=MS.gene41906.t1.exon4;Parent=MS.gene41906.t1
chr7.4 CDS 20251752 20251832 20251752 ID=cds.MS.gene41906.t1;Parent=MS.gene41906.t1
Gene Sequence

>MS.gene41906

ATGGGATCTCATGGAGGAGCAATCCAAGAACAAAAGACTGGAACTTTGGCTAGGGAAGGATCTTTGTACAATCTCACATTTGATGAGGTTCAAAATCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTAGATGAGTTGCTGAAGAGTTTGTGGACATCTGAAGCTGCTCAAGGTTCTGGGTTGGATTCTGGAACCAGTGATGGTTACATGCAGCATGGTCAACTGGCTTCTGGGTCATCTATGAATCCATTGACACTTTCTGGTGATCTTAGTAAGAAAACTATTGATGAGGTTTGGAGATATGCAACAGAAGAAGAGTGCTAGTCAGGATAGGAGAACAGCTACACTTGGTGAGATGACTTTGGAGGATTTCTTGATGAAAGCTGGTGTGGCCACTGAATCATTTCCTAGTGAGGATAATGCTATGTCAGGAAGGGTTGATTCTCAACAGCAGCAACAAAATACATCCCAGCATGGTCATTGGATGCAGTACCAAGTCCCTTCAGTGCAGCAACCACAACAACAACATCAGCATCAAAATCATCAGAATAATATGATGACTGGTTTTGCAGGTTATATGGCTGGTCATGTGGTTCAACAGCCTGTTTTGGATGCCGGATACACTGAAGCAATGGTGAGTTTGTCACCGTCTTCTTTAATAGCTACTTCATCAGATACACAAACTCAAGGTCGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCGCGGGCTAGAAAACAGGTTAAATTTTTTTGTATGATGTTTGTCATTTGTAGTCATTGTTTTTGTTAATAATTAGAGCAATGACATATATTTGTGTGTATGGTGTTAACGAACAGGCTTACACACAAGAGCTGGAGATCAAAGTTTCACACTTAGAAGAAGAGAATGAAAGGCTTAAAAGATTGCATGTATGTTTCATTCTCATTGCAGTTTGCATCTATACTTTATTCCTTTGTCTGGTGTGACATTTGTTAGTTAGTTTTTTCCTGCCATCTTGTGAAGGCAATGAGTGGTTGAAATGTTAGTTAATGAGGACTTCAACTGGCCGGTGCTTGCTTAAGAAATAGAATGTTTACACTGGTTGAACTTTCAAAAATATGATTCAATAACTGGTTTACCTTTTCAGTTAGCATTATTATTCCTTTATTCTTTCTTGAAGTTTTTCACCTTAACATGAATCTCTATTTTGCTTATTAAGCTTTGTGTGGAGTATCTACAAAAGTTATTAAACAAATATTTTCAGTGCGAAACAAAATTTCATCATTTGATATTAGTAGCTGCCATTTTGATGCAATGCAGAAGTCCATTGTTTTGCAATGCTAATATTATACTGTTACTCTGATGTTGCTTGTTTGGCTTTTGCAACCATGCTAACCATGGAAGTCATTTTGGAAAGAAGCGAATCGAAATATTTGAGTTTCCAGTCAATTTTGTTAAATCATATAGAAGGTTTTTGGCTTTAACCGGAAATGGATCTTTACGCGAAAGTTTATGAGATACTCTGGCTTAGAAATTGCAAATGCATTTATACTAACCATTTAGCTTTTATTGTGACATCTAATTATGATCAAACACTACATGAATGACAGATTTTTATGTTTATCCTGCATAGCTTTCATTTGATCTTTCTCCCTGGTTAGTTATTATAATATTGAAACCCATCCCATTAGATTGCTGAGCTGGTTTTTTCCTTTTGTTCAATCCTGTACTACTTCATACATTGTTAAGTTTTCATTATTTCAAAATTGGGACTTAATCTCTGTGCCTAATTTCTTGTTTTGGCACTAAAAGAGCTGCTGATTTTTGAACATTTCCTCCATTTGATAGAAAGTACTCTGGTTTAATGGTAATTTCTGACTTTGTTTTTCTAAAGTTGGAAATATAATATACCTATCACAAGCTTTTGTTAGTTGATTGGATCTTGACATGCCATTAATATTTATCCTTTCCTGAATATTGTTTTGGAGGGTATTATTATTAACACTCTGTCCTCCATGACTTCAAAGGTTACTTTAATGTTTCAAATCAAGAGTTGTGATGATGACTTTTTTTGTTTTGTTGAGAATTTGTGGTCTAGATGACAAAGATGCAACCACGAGAATAGAGTTTGAGCTTCCTTCATTCCATTTCTGAAAACATCTATATAATAAAAACGATGTGGTAATTTTGATGGTTAAAGTAGATGCACTTTGACTAAGAAAGTGAGATAAACCTAGCTGGACTATGGAGTACCTTTTTGCTTTATGATCTGTCTAACATTAGTGTGCAGTTTGTCTTGGTGACAAAATTTCAAGTCAATTCTATAAGATTTGATGCTAATATAGAAAATATAAACTCACAATGAATAAAATAAGCTATCAGTAGTAATAACCTTGATCATTTATCTCTGCTTTATGTAGGCTTTTTGAATAGTACTGTTCTAGAATGATTTAACTTTGTAAGATTTAAACTGTGCGCCAGAACTATCTATGTCTGCAACCTTAATTAATTCGATTAGGAATAACTCAGCTTTTGTGCTGATCTCTAGAAAGTGATTTGGTATGAATCTAGATGATTTATCTCTTCTCATATTAACTTTCTAGTGAATCCTTCATGCAGGAGATAGAGAGAGTATTGCCAAGTATGCCACCACCAGACCCTAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCCTTTGA

Protein sequence

>MS.gene41906.t1

MGSHGGAIQEQKTGTLAREGSLYNLTFDEVQNQLGNLGKPLGSMNLDELLKSLWTSEAAQGSGLDSGTSDGYMQHGQLASGSSMNPLTLSGDLSKKTIDEDRRTATLGEMTLEDFLMKAGVATESFPSEDNAMSGRVDSQQQQQNTSQHGHWMQYQVPSVQQPQQQHQHQNHQNNMMTGFAGYMAGHVVQQPVLDAGYTEAMVSLSPSSLIATSSDTQTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKRLHEIERVLPSMPPPDPKHQLRRTSSAPL