Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014205.t1 | XP_003604055.2 | 80.8 | 396 | 56 | 3 | 5 | 393 | 3 | 385 | 4.30E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014205.t1 | G7J8J7 | 80.8 | 396 | 56 | 3 | 5 | 393 | 3 | 385 | 3.1e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014205 | MS.gene037275 | PPI |
| MS.gene014205 | MS.gene065021 | PPI |
| MS.gene014205 | MS.gene029288 | PPI |
| MS.gene063094 | MS.gene014205 | PPI |
| MS.gene014205 | MS.gene68141 | PPI |
| MS.gene014205 | MS.gene68740 | PPI |
| MS.gene014205 | MS.gene74935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014205.t1 | MTR_3g118020 | 89.899 | 396 | 20 | 5 | 5 | 393 | 3 | 385 | 0.0 | 650 |
| MS.gene014205.t1 | MTR_3g118020 | 91.798 | 317 | 13 | 2 | 77 | 393 | 5 | 308 | 0.0 | 575 |
| MS.gene014205.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 8 | 392 | 12 | 420 | 1.92e-106 | 320 |
| MS.gene014205.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 8 | 392 | 36 | 444 | 3.88e-106 | 320 |
| MS.gene014205.t1 | MTR_1g112660 | 49.333 | 375 | 141 | 13 | 52 | 392 | 3 | 362 | 4.96e-99 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 11 | 386 | 3.66e-39 | 144 |
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 11 | 386 | 3.66e-39 | 144 |
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 11 | 386 | 3.66e-39 | 144 |
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 11 | 386 | 3.66e-39 | 144 |
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 23 | 398 | 5.44e-39 | 144 |
| MS.gene014205.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 8 | 393 | 26 | 401 | 5.93e-39 | 144 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 8.74e-34 | 129 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 8.74e-34 | 129 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 8.74e-34 | 129 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 1.72e-33 | 127 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 1.72e-33 | 127 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 1.72e-33 | 127 |
| MS.gene014205.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 1.72e-33 | 127 |
| MS.gene014205.t1 | AT2G20960 | 31.892 | 185 | 122 | 3 | 209 | 392 | 557 | 738 | 2.83e-27 | 114 |
| MS.gene014205.t1 | AT2G20960 | 31.892 | 185 | 122 | 3 | 209 | 392 | 557 | 738 | 2.83e-27 | 114 |
| MS.gene014205.t1 | AT4G38550 | 32.738 | 168 | 112 | 1 | 203 | 369 | 416 | 583 | 3.07e-27 | 114 |
| MS.gene014205.t1 | AT4G38550 | 32.738 | 168 | 112 | 1 | 203 | 369 | 416 | 583 | 3.07e-27 | 114 |
| MS.gene014205.t1 | AT2G20960 | 31.892 | 185 | 122 | 3 | 209 | 392 | 522 | 703 | 3.44e-27 | 114 |
| MS.gene014205.t1 | AT4G38550 | 32.738 | 168 | 112 | 1 | 203 | 369 | 453 | 620 | 3.79e-27 | 114 |
| MS.gene014205.t1 | AT4G38550 | 32.738 | 168 | 112 | 1 | 203 | 369 | 315 | 482 | 4.11e-27 | 113 |
| MS.gene014205.t1 | AT2G20960 | 31.892 | 185 | 122 | 3 | 209 | 392 | 487 | 668 | 4.40e-27 | 113 |
| MS.gene014205.t1 | AT4G38550 | 32.738 | 168 | 112 | 1 | 203 | 369 | 357 | 524 | 4.42e-27 | 113 |
| MS.gene014205.t1 | AT4G38560 | 38.272 | 162 | 99 | 1 | 209 | 369 | 330 | 491 | 4.17e-26 | 110 |
| MS.gene014205.t1 | AT4G38560 | 38.272 | 162 | 99 | 1 | 209 | 369 | 332 | 493 | 4.55e-26 | 110 |
| MS.gene014205.t1 | AT5G11140 | 34.270 | 178 | 113 | 3 | 216 | 392 | 57 | 231 | 1.40e-25 | 104 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 332 | 492 | 2.64e-21 | 95.9 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 334 | 494 | 2.74e-21 | 95.9 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 315 | 475 | 3.28e-21 | 95.9 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 317 | 477 | 3.53e-21 | 95.5 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 350 | 519 | 4.00e-21 | 95.5 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 288 | 448 | 4.82e-21 | 95.1 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 286 | 446 | 4.86e-21 | 95.1 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 196 | 356 | 5.05e-21 | 94.4 |
| MS.gene014205.t1 | AT2G20950 | 33.540 | 161 | 106 | 1 | 210 | 369 | 196 | 356 | 5.05e-21 | 94.4 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 350 | 519 | 5.79e-21 | 95.1 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 306 | 475 | 1.13e-20 | 94.0 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 306 | 475 | 1.13e-20 | 94.0 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 272 | 441 | 1.23e-20 | 94.0 |
| MS.gene014205.t1 | AT2G20950 | 32.941 | 170 | 113 | 1 | 201 | 369 | 216 | 385 | 1.48e-20 | 93.2 |
Find 83 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAACGATCTCTGATTTC+AGG | 0.204618 | 3.4:+100094884 | None:intergenic |
| TGATAAGGATTGGATGATTT+AGG | 0.249464 | 3.4:+100096326 | None:intergenic |
| GTTTGGTTCCCTTTGTCTTT+TGG | 0.250491 | 3.4:+100096438 | None:intergenic |
| CTTGACAAGTATGGTGATAT+TGG | 0.252220 | 3.4:-100095256 | MS.gene014205:CDS |
| GCCAGAGAAACTAAAATCTT+TGG | 0.259330 | 3.4:+100095420 | None:intergenic |
| CGGAAGAAGATTGTAATTCT+TGG | 0.286432 | 3.4:+100095167 | None:intergenic |
| CCATCCTTAACTTGATCTTT+AGG | 0.299650 | 3.4:+100095553 | None:intergenic |
| CTTGAGCAGCTCATGTCTTC+AGG | 0.305135 | 3.4:-100094857 | MS.gene014205:CDS |
| GATGCCAATTGCAACAATTC+AGG | 0.316155 | 3.4:-100096296 | MS.gene014205:intron |
| TACAATGTCAAAGAAAGTTT+TGG | 0.326292 | 3.4:-100095298 | MS.gene014205:CDS |
| GTTTCATCAGAATTGGTTAC+TGG | 0.334578 | 3.4:+100095457 | None:intergenic |
| TTGACAAGTATGGTGATATT+GGG | 0.341155 | 3.4:-100095255 | MS.gene014205:CDS |
| AATAATAGAAAGGTTATTAA+TGG | 0.347675 | 3.4:-100096380 | MS.gene014205:CDS |
| TTCACCAGTTTCATCAGAAT+TGG | 0.348026 | 3.4:+100095450 | None:intergenic |
| GATGAGATCATTCCTTCTTC+TGG | 0.358336 | 3.4:-100095710 | MS.gene014205:CDS |
| CTTCTTCCTATGATCAATCT+TGG | 0.363222 | 3.4:+100095808 | None:intergenic |
| ACTTGTCAAGTATTGTTTGT+AGG | 0.367480 | 3.4:+100095269 | None:intergenic |
| ATGTGTAATTGAGCAGAAAT+TGG | 0.373749 | 3.4:+100095686 | None:intergenic |
| CAAACAATACTTGACAAGTA+TGG | 0.386291 | 3.4:-100095265 | MS.gene014205:CDS |
| TCTGAATCCCGTGTTTCAAT+TGG | 0.388960 | 3.4:-100095325 | MS.gene014205:CDS |
| GATCTCTGATTTCAGGAATT+CGG | 0.392697 | 3.4:+100094891 | None:intergenic |
| TATTGGGGCAAGCTGTGATT+TGG | 0.400285 | 3.4:-100095239 | MS.gene014205:CDS |
| GACCAAAGTGAGTGAATTGT+TGG | 0.402832 | 3.4:-100095131 | MS.gene014205:CDS |
| GATTAGTCACCATCAGGATA+TGG | 0.405327 | 3.4:-100095023 | MS.gene014205:CDS |
| TGATCTATCTTTGACTTGAT+AGG | 0.411943 | 3.4:+100094809 | None:intergenic |
| GGAACCTGAATTGTTGCAAT+TGG | 0.412011 | 3.4:+100096292 | None:intergenic |
| GGCTAACTATGATCTTGAAA+TGG | 0.413633 | 3.4:-100094990 | MS.gene014205:CDS |
| GTAACCAATTCTGATGAAAC+TGG | 0.417672 | 3.4:-100095454 | MS.gene014205:CDS |
| TGAATTGTTGGATATTGTTA+AGG | 0.426225 | 3.4:-100095119 | MS.gene014205:CDS |
| ATTACACATCCCAGATGTTA+TGG | 0.434766 | 3.4:-100095672 | MS.gene014205:intron |
| GGTGGAACACTTTGAAGAAC+AGG | 0.435930 | 3.4:+100095764 | None:intergenic |
| AGGGACAGTACCATAACATC+TGG | 0.436687 | 3.4:+100095662 | None:intergenic |
| AGCAGCAACATGATGTGGTT+TGG | 0.440038 | 3.4:+100096421 | None:intergenic |
| TCACCATCAGGATATGGAAA+TGG | 0.446433 | 3.4:-100095017 | MS.gene014205:CDS |
| CATGGAGTGTGTATGCTTTG+TGG | 0.449719 | 3.4:-100095191 | MS.gene014205:CDS |
| TTGGCATCACACTTATGATA+AGG | 0.450367 | 3.4:+100096311 | None:intergenic |
| TAGTATCTATTTCTTTGTTG+TGG | 0.469830 | 3.4:+100095383 | None:intergenic |
| TGAATTGATTAGTCACCATC+AGG | 0.473279 | 3.4:-100095029 | MS.gene014205:CDS |
| ATCCAACAATTCACTCACTT+TGG | 0.473716 | 3.4:+100095129 | None:intergenic |
| TCTTTGTTGTGGAGAGGAAG+GGG | 0.483390 | 3.4:+100095394 | None:intergenic |
| TTTGGTCTTACTTATTGAAT+CGG | 0.484588 | 3.4:+100095147 | None:intergenic |
| GCAGCCTAAAGATCAAGTTA+AGG | 0.486423 | 3.4:-100095557 | MS.gene014205:intron |
| GTCAAGTATTGTTTGTAGGA+TGG | 0.493819 | 3.4:+100095273 | None:intergenic |
| GCTTGAGTGCATTGATGGTA+AGG | 0.495066 | 3.4:+100096467 | None:intergenic |
| TTCTTTGTTGTGGAGAGGAA+GGG | 0.496215 | 3.4:+100095393 | None:intergenic |
| TGTGTAATTGAGCAGAAATT+GGG | 0.497868 | 3.4:+100095687 | None:intergenic |
| CTTTGAAGAACAGGAGGTTG+TGG | 0.499804 | 3.4:+100095773 | None:intergenic |
| TCAGGATATGGAAATGGAAA+AGG | 0.500818 | 3.4:-100095011 | MS.gene014205:CDS |
| TTTCTTTGTTGTGGAGAGGA+AGG | 0.502763 | 3.4:+100095392 | None:intergenic |
| GAAATAGATACTAGTAGCGA+AGG | 0.504275 | 3.4:-100095373 | MS.gene014205:CDS |
| AGAACAGCTAGAATCAGAGT+TGG | 0.506724 | 3.4:-100094957 | MS.gene014205:CDS |
| TTTCCATTTCCATATCCTGA+TGG | 0.507099 | 3.4:+100095014 | None:intergenic |
| TAAAACTGAAACAAAGAAAG+AGG | 0.508090 | 3.4:-100095509 | MS.gene014205:CDS |
| GCAGAAATTGGGCCAGAAGA+AGG | 0.508734 | 3.4:+100095698 | None:intergenic |
| CTCATTCCAAGATTGATCAT+AGG | 0.510237 | 3.4:-100095814 | MS.gene014205:CDS |
| AGCAAGCTTGAGTGCATTGA+TGG | 0.510384 | 3.4:+100096462 | None:intergenic |
| ATCACACTTATGATAAGGAT+TGG | 0.522199 | 3.4:+100096316 | None:intergenic |
| AAACCACATCATGTTGCTGC+TGG | 0.525538 | 3.4:-100096419 | MS.gene014205:CDS |
| CAAGATTGATCATAGGAAGA+AGG | 0.551150 | 3.4:-100095807 | MS.gene014205:CDS |
| CTGCTCATCTTCGTGTAGCA+TGG | 0.552976 | 3.4:-100095087 | MS.gene014205:CDS |
| AAGTAATAGCAATAATAGAA+AGG | 0.561570 | 3.4:-100096390 | MS.gene014205:CDS |
| AGAATCAGAGTTGGAAACAT+TGG | 0.561728 | 3.4:-100094948 | MS.gene014205:CDS |
| AATAGAAAGGTTATTAATGG+AGG | 0.564289 | 3.4:-100096377 | MS.gene014205:CDS |
| TGTAATGAGGTCATATTACA+TGG | 0.570115 | 3.4:-100095209 | MS.gene014205:CDS |
| GCTTGCTCCCAAAAGACAAA+GGG | 0.570196 | 3.4:-100096446 | MS.gene014205:CDS |
| AGCTTGCTCCCAAAAGACAA+AGG | 0.578029 | 3.4:-100096447 | MS.gene014205:CDS |
| CTATGATCAATCTTGGAATG+AGG | 0.584964 | 3.4:+100095815 | None:intergenic |
| TCTATTTCTTTGTTGTGGAG+AGG | 0.590301 | 3.4:+100095388 | None:intergenic |
| CTTTGACTTGATAGGTAGCG+TGG | 0.591078 | 3.4:+100094817 | None:intergenic |
| GATTGATCATAGGAAGAAGG+TGG | 0.597603 | 3.4:-100095804 | MS.gene014205:CDS |
| CCTAAAGATCAAGTTAAGGA+TGG | 0.613275 | 3.4:-100095553 | MS.gene014205:CDS |
| TGACAAGTATGGTGATATTG+GGG | 0.617782 | 3.4:-100095254 | MS.gene014205:CDS |
| ATTTGGAATCAGTTGTAATG+AGG | 0.618166 | 3.4:-100095222 | MS.gene014205:CDS |
| ATCAATCTTGGAATGAGGAG+TGG | 0.623309 | 3.4:+100095820 | None:intergenic |
| ATTGGCTCAGAAAGAACAAG+AGG | 0.625513 | 3.4:-100094930 | MS.gene014205:CDS |
| TAGATGATGTCTAGTAGCAA+CGG | 0.628729 | 3.4:-100096512 | None:intergenic |
| AGTTAAGGATGGTGCTACTG+AGG | 0.634421 | 3.4:-100095542 | MS.gene014205:CDS |
| TCTGATGAAACTGGTGAAGG+TGG | 0.634531 | 3.4:-100095445 | MS.gene014205:CDS |
| GTACCAGCAGCAACATGATG+TGG | 0.635041 | 3.4:+100096416 | None:intergenic |
| GGGACAGTACCATAACATCT+GGG | 0.646171 | 3.4:+100095663 | None:intergenic |
| ATTGATCATAGGAAGAAGGT+GGG | 0.646766 | 3.4:-100095803 | MS.gene014205:CDS |
| GGAACACTTTGAAGAACAGG+AGG | 0.650409 | 3.4:+100095767 | None:intergenic |
| AATTCTGATGAAACTGGTGA+AGG | 0.697682 | 3.4:-100095448 | MS.gene014205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTGTTTAAATATATATATA+TGG | + | chr3.4:100095710-100095729 | None:intergenic | 10.0% |
| !! | TTAATTTAAATTATAAGTGT+TGG | + | chr3.4:100095191-100095210 | None:intergenic | 10.0% |
| !!! | TTTTTACAAAAATAAATAGA+GGG | - | chr3.4:100095084-100095103 | MS.gene014205:CDS | 10.0% |
| !!! | TTTTTTACAAAAATAAATAG+AGG | - | chr3.4:100095083-100095102 | MS.gene014205:CDS | 10.0% |
| !! | AATAATAGAAAGGTTATTAA+TGG | - | chr3.4:100094925-100094944 | MS.gene014205:CDS | 15.0% |
| !!! | ATATATGGTTTATTATCTTT+TGG | + | chr3.4:100095695-100095714 | None:intergenic | 15.0% |
| !!! | TTTGGTTTTATATTAACAAA+AGG | + | chr3.4:100095677-100095696 | None:intergenic | 15.0% |
| !! | AAGTAATAGCAATAATAGAA+AGG | - | chr3.4:100094915-100094934 | MS.gene014205:CDS | 20.0% |
| !! | ATAAAATAAGATCAAATTGC+AGG | - | chr3.4:100095460-100095479 | MS.gene014205:CDS | 20.0% |
| !!! | TTCTTTGTTTCAGTTTTATT+GGG | + | chr3.4:100095794-100095813 | None:intergenic | 20.0% |
| !!! | TTTAAATTATAAGTGTTGGT+TGG | + | chr3.4:100095187-100095206 | None:intergenic | 20.0% |
| !!! | TTTCTTTGTTTCAGTTTTAT+TGG | + | chr3.4:100095795-100095814 | None:intergenic | 20.0% |
| !!! | TTTTTGTTATGAGAATAATG+TGG | + | chr3.4:100095574-100095593 | None:intergenic | 20.0% |
| ! | AATAGAAAGGTTATTAATGG+AGG | - | chr3.4:100094928-100094947 | MS.gene014205:CDS | 25.0% |
| ! | AATAGAGGGTTTATGAAAAA+TGG | - | chr3.4:100095098-100095117 | MS.gene014205:CDS | 25.0% |
| ! | AATGAAATGGTCAAACAAAA+TGG | + | chr3.4:100095311-100095330 | None:intergenic | 25.0% |
| ! | ATTAACAAAAGGTTGTGTAA+AGG | + | chr3.4:100095666-100095685 | None:intergenic | 25.0% |
| ! | TAAAACTGAAACAAAGAAAG+AGG | - | chr3.4:100095796-100095815 | MS.gene014205:CDS | 25.0% |
| ! | TATTAGATTGAATACGATAG+TGG | + | chr3.4:100095138-100095157 | None:intergenic | 25.0% |
| ! | TGAATTGTTGGATATTGTTA+AGG | - | chr3.4:100096186-100096205 | MS.gene014205:intron | 25.0% |
| ! | TTAACAAAAGGTTGTGTAAA+GGG | + | chr3.4:100095665-100095684 | None:intergenic | 25.0% |
| !! | TACAATGTCAAAGAAAGTTT+TGG | - | chr3.4:100096007-100096026 | MS.gene014205:intron | 25.0% |
| !! | TAGTATCTATTTCTTTGTTG+TGG | + | chr3.4:100095925-100095944 | None:intergenic | 25.0% |
| !! | TGTATTTTCCAATTGAAACA+CGG | + | chr3.4:100095991-100096010 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTCAGTTTTATTG+GGG | + | chr3.4:100095793-100095812 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTACTTATTGAAT+CGG | + | chr3.4:100096161-100096180 | None:intergenic | 25.0% |
| ACCAATCCATTCTAATGAAA+TGG | + | chr3.4:100095324-100095343 | None:intergenic | 30.0% | |
| ACCATTTCATTAGAATGGAT+TGG | - | chr3.4:100095320-100095339 | MS.gene014205:CDS | 30.0% | |
| ATCACACTTATGATAAGGAT+TGG | + | chr3.4:100094992-100095011 | None:intergenic | 30.0% | |
| ATGTGTAATTGAGCAGAAAT+TGG | + | chr3.4:100095622-100095641 | None:intergenic | 30.0% | |
| CAAACAATACTTGACAAGTA+TGG | - | chr3.4:100096040-100096059 | MS.gene014205:intron | 30.0% | |
| GTTTGACCATTTCATTAGAA+TGG | - | chr3.4:100095315-100095334 | MS.gene014205:CDS | 30.0% | |
| TGATAAGGATTGGATGATTT+AGG | + | chr3.4:100094982-100095001 | None:intergenic | 30.0% | |
| TGTAATGAGGTCATATTACA+TGG | - | chr3.4:100096096-100096115 | MS.gene014205:intron | 30.0% | |
| TGTGTAATTGAGCAGAAATT+GGG | + | chr3.4:100095621-100095640 | None:intergenic | 30.0% | |
| TTGACAAGTATGGTGATATT+GGG | - | chr3.4:100096050-100096069 | MS.gene014205:intron | 30.0% | |
| ! | ACTTGTCAAGTATTGTTTGT+AGG | + | chr3.4:100096039-100096058 | None:intergenic | 30.0% |
| ! | ATTTGGAATCAGTTGTAATG+AGG | - | chr3.4:100096083-100096102 | MS.gene014205:intron | 30.0% |
| ! | GTATTTTCCAATTGAAACAC+GGG | + | chr3.4:100095990-100096009 | None:intergenic | 30.0% |
| !! | TGATCTATCTTTGACTTGAT+AGG | + | chr3.4:100096499-100096518 | None:intergenic | 30.0% |
| !!! | TCCAAAGATTTTAGTTTCTC+TGG | - | chr3.4:100095884-100095903 | MS.gene014205:intron | 30.0% |
| !!! | TGAGAATAATGTGGTTTTGT+TGG | + | chr3.4:100095565-100095584 | None:intergenic | 30.0% |
| AATTCTGATGAAACTGGTGA+AGG | - | chr3.4:100095857-100095876 | MS.gene014205:intron | 35.0% | |
| AGAATCAGAGTTGGAAACAT+TGG | - | chr3.4:100096357-100096376 | MS.gene014205:CDS | 35.0% | |
| ATCCAACAATTCACTCACTT+TGG | + | chr3.4:100096179-100096198 | None:intergenic | 35.0% | |
| ATTACACATCCCAGATGTTA+TGG | - | chr3.4:100095633-100095652 | MS.gene014205:intron | 35.0% | |
| ATTGATCATAGGAAGAAGGT+GGG | - | chr3.4:100095502-100095521 | MS.gene014205:CDS | 35.0% | |
| CAAGATTGATCATAGGAAGA+AGG | - | chr3.4:100095498-100095517 | MS.gene014205:CDS | 35.0% | |
| CCTAAAGATCAAGTTAAGGA+TGG | - | chr3.4:100095752-100095771 | MS.gene014205:CDS | 35.0% | |
| CGGAAGAAGATTGTAATTCT+TGG | + | chr3.4:100096141-100096160 | None:intergenic | 35.0% | |
| CGTTTACATGTGTAGTAAGT+AGG | - | chr3.4:100095272-100095291 | MS.gene014205:CDS | 35.0% | |
| CTATGATCAATCTTGGAATG+AGG | + | chr3.4:100095493-100095512 | None:intergenic | 35.0% | |
| CTCATTCCAAGATTGATCAT+AGG | - | chr3.4:100095491-100095510 | MS.gene014205:CDS | 35.0% | |
| CTTCTTCCTATGATCAATCT+TGG | + | chr3.4:100095500-100095519 | None:intergenic | 35.0% | |
| CTTGACAAGTATGGTGATAT+TGG | - | chr3.4:100096049-100096068 | MS.gene014205:intron | 35.0% | |
| GAAATAGATACTAGTAGCGA+AGG | - | chr3.4:100095932-100095951 | MS.gene014205:intron | 35.0% | |
| GATCTCTGATTTCAGGAATT+CGG | + | chr3.4:100096417-100096436 | None:intergenic | 35.0% | |
| GCCAGAGAAACTAAAATCTT+TGG | + | chr3.4:100095888-100095907 | None:intergenic | 35.0% | |
| GGCTAACTATGATCTTGAAA+TGG | - | chr3.4:100096315-100096334 | MS.gene014205:CDS | 35.0% | |
| GTAACCAATTCTGATGAAAC+TGG | - | chr3.4:100095851-100095870 | MS.gene014205:intron | 35.0% | |
| GTTTCATCAGAATTGGTTAC+TGG | + | chr3.4:100095851-100095870 | None:intergenic | 35.0% | |
| TCAGGATATGGAAATGGAAA+AGG | - | chr3.4:100096294-100096313 | MS.gene014205:intron | 35.0% | |
| TGACAAGTATGGTGATATTG+GGG | - | chr3.4:100096051-100096070 | MS.gene014205:intron | 35.0% | |
| TGCAGGAGATAAAAATGTGT+TGG | + | chr3.4:100095360-100095379 | None:intergenic | 35.0% | |
| TTCACCAGTTTCATCAGAAT+TGG | + | chr3.4:100095858-100095877 | None:intergenic | 35.0% | |
| TTGGCATCACACTTATGATA+AGG | + | chr3.4:100094997-100095016 | None:intergenic | 35.0% | |
| TTTCCATTTCCATATCCTGA+TGG | + | chr3.4:100096294-100096313 | None:intergenic | 35.0% | |
| ! | CCATCCTTAACTTGATCTTT+AGG | + | chr3.4:100095755-100095774 | None:intergenic | 35.0% |
| ! | GTCAAGTATTGTTTGTAGGA+TGG | + | chr3.4:100096035-100096054 | None:intergenic | 35.0% |
| ! | TCTATTTCTTTGTTGTGGAG+AGG | + | chr3.4:100095920-100095939 | None:intergenic | 35.0% |
| ! | TGAATTGATTAGTCACCATC+AGG | - | chr3.4:100096276-100096295 | MS.gene014205:intron | 35.0% |
| !! | TTTGGTTCCCTTTGTCTTTT+GGG | + | chr3.4:100094869-100094888 | None:intergenic | 35.0% |
| !!! | GAATAATGTGGTTTTGTTGG+TGG | + | chr3.4:100095562-100095581 | None:intergenic | 35.0% |
| !!! | TTGTTTCAGTTTTATTGGGG+AGG | + | chr3.4:100095790-100095809 | None:intergenic | 35.0% |
| AGAACAGCTAGAATCAGAGT+TGG | - | chr3.4:100096348-100096367 | MS.gene014205:CDS | 40.0% | |
| ATCAATCTTGGAATGAGGAG+TGG | + | chr3.4:100095488-100095507 | None:intergenic | 40.0% | |
| CTCAAACGATCTCTGATTTC+AGG | + | chr3.4:100096424-100096443 | None:intergenic | 40.0% | |
| GACCAAAGTGAGTGAATTGT+TGG | - | chr3.4:100096174-100096193 | MS.gene014205:intron | 40.0% | |
| GATGAGATCATTCCTTCTTC+TGG | - | chr3.4:100095595-100095614 | MS.gene014205:intron | 40.0% | |
| GATGCCAATTGCAACAATTC+AGG | - | chr3.4:100095009-100095028 | MS.gene014205:CDS | 40.0% | |
| GATTGATCATAGGAAGAAGG+TGG | - | chr3.4:100095501-100095520 | MS.gene014205:CDS | 40.0% | |
| GCAGCCTAAAGATCAAGTTA+AGG | - | chr3.4:100095748-100095767 | MS.gene014205:CDS | 40.0% | |
| GGAACCTGAATTGTTGCAAT+TGG | + | chr3.4:100095016-100095035 | None:intergenic | 40.0% | |
| TCACCATCAGGATATGGAAA+TGG | - | chr3.4:100096288-100096307 | MS.gene014205:intron | 40.0% | |
| TCTGAATCCCGTGTTTCAAT+TGG | - | chr3.4:100095980-100095999 | MS.gene014205:intron | 40.0% | |
| TGTAATGACACAATGAGTGC+AGG | + | chr3.4:100095377-100095396 | None:intergenic | 40.0% | |
| ! | ATTGGCTCAGAAAGAACAAG+AGG | - | chr3.4:100096375-100096394 | MS.gene014205:CDS | 40.0% |
| ! | GATTAGTCACCATCAGGATA+TGG | - | chr3.4:100096282-100096301 | MS.gene014205:intron | 40.0% |
| ! | TTCTTTGTTGTGGAGAGGAA+GGG | + | chr3.4:100095915-100095934 | None:intergenic | 40.0% |
| ! | TTTCTTTGTTGTGGAGAGGA+AGG | + | chr3.4:100095916-100095935 | None:intergenic | 40.0% |
| !! | GTTTGGTTCCCTTTGTCTTT+TGG | + | chr3.4:100094870-100094889 | None:intergenic | 40.0% |
| AAACCACATCATGTTGCTGC+TGG | - | chr3.4:100094886-100094905 | MS.gene014205:CDS | 45.0% | |
| AGCAAGCTTGAGTGCATTGA+TGG | + | chr3.4:100094846-100094865 | None:intergenic | 45.0% | |
| AGCAGCAACATGATGTGGTT+TGG | + | chr3.4:100094887-100094906 | None:intergenic | 45.0% | |
| AGGGACAGTACCATAACATC+TGG | + | chr3.4:100095646-100095665 | None:intergenic | 45.0% | |
| CATGGAGTGTGTATGCTTTG+TGG | - | chr3.4:100096114-100096133 | MS.gene014205:intron | 45.0% | |
| CATGTGTAGTAAGTAGGTGC+AGG | - | chr3.4:100095278-100095297 | MS.gene014205:CDS | 45.0% | |
| GCTTGCTCCCAAAAGACAAA+GGG | - | chr3.4:100094859-100094878 | MS.gene014205:CDS | 45.0% | |
| GGGACAGTACCATAACATCT+GGG | + | chr3.4:100095645-100095664 | None:intergenic | 45.0% | |
| TATTGGGGCAAGCTGTGATT+TGG | - | chr3.4:100096066-100096085 | MS.gene014205:intron | 45.0% | |
| TCTGATGAAACTGGTGAAGG+TGG | - | chr3.4:100095860-100095879 | MS.gene014205:intron | 45.0% | |
| ! | AGCTTGCTCCCAAAAGACAA+AGG | - | chr3.4:100094858-100094877 | MS.gene014205:CDS | 45.0% |
| ! | CTTTGAAGAACAGGAGGTTG+TGG | + | chr3.4:100095535-100095554 | None:intergenic | 45.0% |
| ! | GCTTGAGTGCATTGATGGTA+AGG | + | chr3.4:100094841-100094860 | None:intergenic | 45.0% |
| ! | GGAACACTTTGAAGAACAGG+AGG | + | chr3.4:100095541-100095560 | None:intergenic | 45.0% |
| ! | GGTGGAACACTTTGAAGAAC+AGG | + | chr3.4:100095544-100095563 | None:intergenic | 45.0% |
| ! | TCTTTGTTGTGGAGAGGAAG+GGG | + | chr3.4:100095914-100095933 | None:intergenic | 45.0% |
| !! | AGTTAAGGATGGTGCTACTG+AGG | - | chr3.4:100095763-100095782 | MS.gene014205:CDS | 45.0% |
| !! | CTTTGACTTGATAGGTAGCG+TGG | + | chr3.4:100096491-100096510 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3.4:100095038-100095057 | None:intergenic | 50.0% | |
| AGTAAGTAGGTGCAGGTGCA+TGG | - | chr3.4:100095285-100095304 | MS.gene014205:CDS | 50.0% | |
| CTGCTCATCTTCGTGTAGCA+TGG | - | chr3.4:100096218-100096237 | MS.gene014205:intron | 50.0% | |
| CTTGAGCAGCTCATGTCTTC+AGG | - | chr3.4:100096448-100096467 | MS.gene014205:CDS | 50.0% | |
| GCAGAAATTGGGCCAGAAGA+AGG | + | chr3.4:100095610-100095629 | None:intergenic | 50.0% | |
| GTACCAGCAGCAACATGATG+TGG | + | chr3.4:100094892-100094911 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+AGG | + | chr3.4:100095037-100095056 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 100094799 | 100096528 | 100094799 | ID=MS.gene014205 |
| chr3.4 | mRNA | 100094799 | 100096528 | 100094799 | ID=MS.gene014205.t1;Parent=MS.gene014205 |
| chr3.4 | exon | 100096297 | 100096528 | 100096297 | ID=MS.gene014205.t1.exon1;Parent=MS.gene014205.t1 |
| chr3.4 | CDS | 100096297 | 100096528 | 100096297 | ID=cds.MS.gene014205.t1;Parent=MS.gene014205.t1 |
| chr3.4 | exon | 100095673 | 100095845 | 100095673 | ID=MS.gene014205.t1.exon2;Parent=MS.gene014205.t1 |
| chr3.4 | CDS | 100095673 | 100095845 | 100095673 | ID=cds.MS.gene014205.t1;Parent=MS.gene014205.t1 |
| chr3.4 | exon | 100094799 | 100095575 | 100094799 | ID=MS.gene014205.t1.exon3;Parent=MS.gene014205.t1 |
| chr3.4 | CDS | 100094799 | 100095575 | 100094799 | ID=cds.MS.gene014205.t1;Parent=MS.gene014205.t1 |
| Gene Sequence |
| Protein sequence |
