Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029288.t1 | XP_013470327.1 | 92.6 | 430 | 32 | 0 | 1 | 430 | 25 | 454 | 4.60E-200 | 707.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029288.t1 | A0A072VRU0 | 92.6 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 3.3e-200 | 707.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029288 | MS.gene037275 | PPI |
| MS.gene029288 | MS.gene74935 | PPI |
| MS.gene063094 | MS.gene029288 | PPI |
| MS.gene68141 | MS.gene029288 | PPI |
| MS.gene014205 | MS.gene029288 | PPI |
| MS.gene037275 | MS.gene029288 | PPI |
| MS.gene065021 | MS.gene029288 | PPI |
| MS.gene029288 | MS.gene68141 | PPI |
| MS.gene029288 | MS.gene68740 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029288.t1 | MTR_1g112660 | 96.512 | 430 | 15 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| MS.gene029288.t1 | MTR_1g112660 | 96.512 | 430 | 15 | 0 | 1 | 430 | 25 | 454 | 0.0 | 847 |
| MS.gene029288.t1 | MTR_1g112660 | 97.312 | 372 | 10 | 0 | 59 | 430 | 1 | 372 | 0.0 | 735 |
| MS.gene029288.t1 | MTR_3g118020 | 45.412 | 425 | 170 | 13 | 12 | 420 | 6 | 384 | 2.08e-84 | 263 |
| MS.gene029288.t1 | MTR_3g118020 | 47.813 | 343 | 125 | 11 | 92 | 420 | 5 | 307 | 1.43e-72 | 230 |
| MS.gene029288.t1 | MTR_8g089530 | 28.708 | 209 | 135 | 4 | 232 | 430 | 217 | 421 | 2.24e-14 | 75.1 |
| MS.gene029288.t1 | MTR_2g006000 | 29.082 | 196 | 122 | 5 | 248 | 430 | 233 | 424 | 8.02e-13 | 70.1 |
| MS.gene029288.t1 | MTR_8g089440 | 27.485 | 171 | 107 | 4 | 176 | 332 | 226 | 393 | 4.07e-12 | 68.2 |
| MS.gene029288.t1 | MTR_8g089480 | 27.485 | 171 | 107 | 4 | 176 | 332 | 167 | 334 | 5.79e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029288.t1 | AT2G16900 | 29.684 | 411 | 221 | 12 | 59 | 430 | 1 | 382 | 1.15e-39 | 146 |
| MS.gene029288.t1 | AT2G16900 | 29.684 | 411 | 221 | 12 | 59 | 430 | 1 | 382 | 1.15e-39 | 146 |
| MS.gene029288.t1 | AT2G16900 | 29.684 | 411 | 221 | 12 | 59 | 430 | 1 | 382 | 1.15e-39 | 146 |
| MS.gene029288.t1 | AT4G35110 | 30.193 | 414 | 223 | 14 | 57 | 430 | 11 | 398 | 6.66e-38 | 142 |
| MS.gene029288.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.40e-35 | 133 |
| MS.gene029288.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.40e-35 | 133 |
| MS.gene029288.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.40e-35 | 133 |
| MS.gene029288.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.40e-35 | 133 |
| MS.gene029288.t1 | AT4G38550 | 34.896 | 192 | 125 | 0 | 235 | 426 | 317 | 508 | 2.42e-34 | 134 |
| MS.gene029288.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 4.19e-34 | 134 |
| MS.gene029288.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 4.19e-34 | 134 |
| MS.gene029288.t1 | AT4G38550 | 34.896 | 192 | 125 | 0 | 235 | 426 | 359 | 550 | 4.22e-34 | 134 |
| MS.gene029288.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 449 | 649 | 4.52e-34 | 135 |
| MS.gene029288.t1 | AT5G11140 | 36.216 | 185 | 118 | 0 | 246 | 430 | 57 | 241 | 1.13e-33 | 126 |
| MS.gene029288.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 323 | 521 | 7.96e-32 | 127 |
| MS.gene029288.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 325 | 523 | 9.85e-32 | 127 |
| MS.gene029288.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 486 | 678 | 1.32e-31 | 127 |
| MS.gene029288.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 521 | 713 | 1.74e-31 | 127 |
| MS.gene029288.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 1.94e-31 | 127 |
| MS.gene029288.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 1.94e-31 | 127 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.64e-28 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.64e-28 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 225 | 411 | 1.68e-27 | 113 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 332 | 518 | 1.85e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 1.85e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 334 | 520 | 1.92e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 317 | 503 | 1.97e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.08e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 286 | 472 | 2.45e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 288 | 474 | 2.54e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 281 | 467 | 3.43e-27 | 113 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 3.49e-27 | 114 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.28e-27 | 113 |
| MS.gene029288.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.28e-27 | 113 |
Find 75 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCAAGGTTGATAATT+TGG | 0.133061 | 1.4:-86544563 | MS.gene029288:CDS |
| AAGATAAATGGCGCCAATTT+TGG | 0.217899 | 1.4:+86545666 | None:intergenic |
| CAAGCCACCTAAGAATAAAA+AGG | 0.248587 | 1.4:-86547111 | MS.gene029288:CDS |
| CTGCTTGATTTGTCTGTATC+TGG | 0.275302 | 1.4:+86545262 | None:intergenic |
| AGAATGTCTGGAGCTGATTC+AGG | 0.287049 | 1.4:-86546247 | MS.gene029288:intron |
| AGCCAACAATTCTTTAACTT+TGG | 0.290817 | 1.4:+86544879 | None:intergenic |
| TGAGATGAAGTCATCTGATT+TGG | 0.311588 | 1.4:-86544605 | MS.gene029288:CDS |
| CAATCTATCTTTGACAAGTA+TGG | 0.315042 | 1.4:-86545018 | MS.gene029288:CDS |
| GTTGCAATCAACCTCAATAA+TGG | 0.352010 | 1.4:-86544914 | MS.gene029288:CDS |
| AGTGTTCCGGCCTCCAAAAT+TGG | 0.352728 | 1.4:-86545679 | MS.gene029288:CDS |
| ATGTCATCAAAACAGGTTAC+TGG | 0.372121 | 1.4:+86545210 | None:intergenic |
| TTTGGATAGCAGATCATTGC+TGG | 0.373557 | 1.4:-86544545 | MS.gene029288:CDS |
| TGGTAAGGATTAGATGCTTT+AGG | 0.387405 | 1.4:+86546295 | None:intergenic |
| GTCCAAAGTTAAAGAATTGT+TGG | 0.391107 | 1.4:-86544881 | MS.gene029288:CDS |
| TTGAGGTTGATTGCAACTCT+TGG | 0.403873 | 1.4:+86544920 | None:intergenic |
| CTGTCAAGAACTGGGAGTTC+AGG | 0.405904 | 1.4:+86545700 | None:intergenic |
| GCCGGAACACTGTCAAGAAC+TGG | 0.406161 | 1.4:+86545691 | None:intergenic |
| GATGTTTCTGAGAATCTTGC+CGG | 0.411593 | 1.4:-86545285 | MS.gene029288:CDS |
| TTCTCCAATGTCATCAAAAC+AGG | 0.411746 | 1.4:+86545203 | None:intergenic |
| ACACAGTTTGGCATAACTCT+TGG | 0.416359 | 1.4:+86547200 | None:intergenic |
| GGTTGGACTTTGTCATTGAC+AGG | 0.416998 | 1.4:+86545312 | None:intergenic |
| CCTTCGCTGCCTCCACGGAC+TGG | 0.417167 | 1.4:+86544761 | None:intergenic |
| TTTGACAAGTATGGCGATAT+AGG | 0.417915 | 1.4:-86545009 | MS.gene029288:CDS |
| CATCTGATTTGGAGAAGAAC+AGG | 0.418056 | 1.4:-86544594 | MS.gene029288:CDS |
| CCCAGTTCTTGACAGTGTTC+CGG | 0.418245 | 1.4:-86545692 | MS.gene029288:CDS |
| CTTTGTTAATTCCATTATTG+AGG | 0.418558 | 1.4:+86544903 | None:intergenic |
| TGCCGCATCAGCAAGATAAA+TGG | 0.426980 | 1.4:+86545654 | None:intergenic |
| TTAGAAGCATATACACAGTT+TGG | 0.434446 | 1.4:+86547188 | None:intergenic |
| AGATTCTCAGAAACATCCTT+TGG | 0.438317 | 1.4:+86545291 | None:intergenic |
| TATAGGAGAAAGCTGCCATT+TGG | 0.447354 | 1.4:-86544992 | MS.gene029288:CDS |
| AATTGCCAGAAAAGAATGTC+TGG | 0.451422 | 1.4:-86546259 | MS.gene029288:CDS |
| GGCTGACTCTGATAGTGAAA+TGG | 0.452176 | 1.4:-86544740 | MS.gene029288:CDS |
| GGTTTCTGAGACGCGTGTTC+CGG | 0.453188 | 1.4:-86545082 | MS.gene029288:CDS |
| TTCACATGGTATCTTCCAAC+CGG | 0.459840 | 1.4:+86545063 | None:intergenic |
| ACTTGTCAAAGATAGATTGC+AGG | 0.471370 | 1.4:+86545022 | None:intergenic |
| GCTATCCAAATTATCAACCT+TGG | 0.473319 | 1.4:+86544558 | None:intergenic |
| TCTCAGAAACATCCTTTGGT+TGG | 0.476740 | 1.4:+86545295 | None:intergenic |
| AATTGAATTCCTTGATCTTG+TGG | 0.477003 | 1.4:+86547135 | None:intergenic |
| AGAAAGCTGCCATTTGGAAT+CGG | 0.478703 | 1.4:-86544986 | MS.gene029288:CDS |
| GAGGACAGTGATGATGAAGA+GGG | 0.480600 | 1.4:-86545117 | MS.gene029288:CDS |
| CGCCATTTATCTTGCTGATG+CGG | 0.483504 | 1.4:-86545656 | MS.gene029288:CDS |
| TCATTCCATTAACCTTTGAC+AGG | 0.484823 | 1.4:-86545744 | MS.gene029288:CDS |
| ATCAGAATAACAAAAGTGCT+TGG | 0.488484 | 1.4:+86545155 | None:intergenic |
| GTCAGCCTTCGCTGCCTCCA+CGG | 0.492054 | 1.4:+86544756 | None:intergenic |
| CCAGTCCGTGGAGGCAGCGA+AGG | 0.500128 | 1.4:-86544761 | MS.gene029288:CDS |
| AATGAGATAGTACCAGCTTC+TGG | 0.501090 | 1.4:-86545583 | MS.gene029288:CDS |
| GGTGTTATAGAAAGTGAGAT+AGG | 0.519458 | 1.4:-86546358 | MS.gene029288:CDS |
| CTGCTCAACTTCGCGTGACG+TGG | 0.519956 | 1.4:-86544837 | MS.gene029288:CDS |
| TTTACATCACACGCATGGTA+AGG | 0.525868 | 1.4:+86546280 | None:intergenic |
| GCATCACAACCGATTCCAAA+TGG | 0.527475 | 1.4:+86544977 | None:intergenic |
| GAAGGTCTAACTACATCAGC+TGG | 0.534751 | 1.4:-86545183 | MS.gene029288:CDS |
| TCAAAGATAGATTGCAGGAT+GGG | 0.535446 | 1.4:+86545027 | None:intergenic |
| TGAGGACAGTGATGATGAAG+AGG | 0.538033 | 1.4:-86545118 | MS.gene029288:CDS |
| TGATGTTCTCCGTGATAATG+AGG | 0.548223 | 1.4:-86545136 | MS.gene029288:CDS |
| AAATTGCATCCACAAGATCA+AGG | 0.554464 | 1.4:-86547144 | MS.gene029288:CDS |
| TTGATTTGTCTGTATCTGGC+CGG | 0.560826 | 1.4:+86545266 | None:intergenic |
| GTATGTAGTTCACCAGAAGC+TGG | 0.576929 | 1.4:+86545571 | None:intergenic |
| TCTGAGACGCGTGTTCCGGT+TGG | 0.579971 | 1.4:-86545078 | MS.gene029288:CDS |
| CAGGCTATCTATCAAATCCA+AGG | 0.590819 | 1.4:-86544575 | MS.gene029288:CDS |
| CCGGAACACTGTCAAGAACT+GGG | 0.591723 | 1.4:+86545692 | None:intergenic |
| CAGATACAGACAAATCAAGC+AGG | 0.602638 | 1.4:-86545261 | MS.gene029288:CDS |
| GTCAAAGATAGATTGCAGGA+TGG | 0.607166 | 1.4:+86545026 | None:intergenic |
| GGCAATTTACATCACACGCA+TGG | 0.610083 | 1.4:+86546275 | None:intergenic |
| GAGCAAAGCTTTCCTTCACA+TGG | 0.615016 | 1.4:+86545049 | None:intergenic |
| CATTGATGAGCACCAGTCCG+TGG | 0.628033 | 1.4:-86544773 | MS.gene029288:CDS |
| CATCACTGTCCTCATTATCA+CGG | 0.628549 | 1.4:+86545127 | None:intergenic |
| ACTACATACTCTAGATGTCA+AGG | 0.630737 | 1.4:-86545557 | MS.gene029288:intron |
| ATTTGGAATCGGTTGTGATG+CGG | 0.643613 | 1.4:-86544975 | MS.gene029288:CDS |
| GGTCTAACTACATCAGCTGG+TGG | 0.651697 | 1.4:-86545180 | MS.gene029288:CDS |
| TTTGACTCAGAAAGAACGGG+AGG | 0.654627 | 1.4:-86544680 | MS.gene029288:CDS |
| CAATGACAAAGTCCAACCAA+AGG | 0.663967 | 1.4:-86545307 | MS.gene029288:CDS |
| TGAAGAGGGAAGTGAGTCTG+TGG | 0.676872 | 1.4:-86545103 | MS.gene029288:CDS |
| GGTTGGAAGATACCATGTGA+AGG | 0.677016 | 1.4:-86545061 | MS.gene029288:CDS |
| TGATGAGCACCAGTCCGTGG+AGG | 0.694249 | 1.4:-86544770 | MS.gene029288:CDS |
| ATAGTGAAATGGAATCACTG+AGG | 0.783003 | 1.4:-86544729 | MS.gene029288:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr1.4:86545183-86545202 | MS.gene029288:CDS | 0.0% |
| !! | ATAAATATATTTAACAAAGA+TGG | - | chr1.4:86546323-86546342 | MS.gene029288:CDS | 10.0% |
| !! | ATATTAAAACAAAAATTGAA+GGG | - | chr1.4:86547095-86547114 | MS.gene029288:intron | 10.0% |
| !! | AGAGATTAAAAATTTATGAT+AGG | + | chr1.4:86544997-86545016 | None:intergenic | 15.0% |
| !! | GATATTAAAACAAAAATTGA+AGG | - | chr1.4:86547094-86547113 | MS.gene029288:intron | 15.0% |
| !! | TAATATAGTTTAGTTATGTA+TGG | - | chr1.4:86544943-86544962 | MS.gene029288:CDS | 15.0% |
| !!! | TTGTCATAATATTTTGATAT+TGG | + | chr1.4:86546121-86546140 | None:intergenic | 15.0% |
| !! | AAATTGCAGATAAAAAATGA+AGG | + | chr1.4:86545529-86545548 | None:intergenic | 20.0% |
| !! | AATTGCAGATAAAAAATGAA+GGG | + | chr1.4:86545528-86545547 | None:intergenic | 20.0% |
| !! | AGAAGTAATAATTTATCCTT+TGG | - | chr1.4:86545278-86545297 | MS.gene029288:CDS | 20.0% |
| !! | ATATTATGACAAGAAAAAGT+TGG | - | chr1.4:86546129-86546148 | MS.gene029288:intron | 20.0% |
| !! | TTTGTCAACTTACAAATATT+TGG | - | chr1.4:86545898-86545917 | MS.gene029288:intron | 20.0% |
| !!! | ATACTCTTTTTAATATACCT+TGG | - | chr1.4:86544689-86544708 | MS.gene029288:CDS | 20.0% |
| !!! | CATTTTTTATCTGCAATTTA+TGG | - | chr1.4:86545530-86545549 | MS.gene029288:intron | 20.0% |
| !!! | TATTTTCATATAAGCTATCA+TGG | + | chr1.4:86544814-86544833 | None:intergenic | 20.0% |
| ! | AATAACTAAGTGTTCATTCA+TGG | - | chr1.4:86545942-86545961 | MS.gene029288:intron | 25.0% |
| ! | ACTAAACTATATTACCTGTT+TGG | + | chr1.4:86544937-86544956 | None:intergenic | 25.0% |
| ! | CTACAATCTTCTTAAATTGT+AGG | - | chr1.4:86545977-86545996 | MS.gene029288:intron | 25.0% |
| ! | CTATTGATATTAGCACATAT+GGG | - | chr1.4:86544741-86544760 | MS.gene029288:CDS | 25.0% |
| ! | CTTTGTTAATTCCATTATTG+AGG | + | chr1.4:86546846-86546865 | None:intergenic | 25.0% |
| ! | GAAAGAACTAGAATCAAAAA+TGG | - | chr1.4:86547039-86547058 | MS.gene029288:intron | 25.0% |
| ! | GATAAACACTGATACTAAAA+GGG | - | chr1.4:86544890-86544909 | MS.gene029288:CDS | 25.0% |
| ! | GCAATTATTTCATATCAGTT+AGG | + | chr1.4:86545304-86545323 | None:intergenic | 25.0% |
| ! | TATAATCGATACAACTATAG+AGG | + | chr1.4:86545085-86545104 | None:intergenic | 25.0% |
| ! | TCTATTGATATTAGCACATA+TGG | - | chr1.4:86544740-86544759 | MS.gene029288:CDS | 25.0% |
| ! | TGATAAACACTGATACTAAA+AGG | - | chr1.4:86544889-86544908 | MS.gene029288:CDS | 25.0% |
| ! | TTAACTATATGCTATTGAGA+AGG | + | chr1.4:86546385-86546404 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTGGAAAACAAAA+AGG | + | chr1.4:86545362-86545381 | None:intergenic | 25.0% |
| !!! | AAATTTTGACTCAGAAAGAA+CGG | - | chr1.4:86547062-86547081 | MS.gene029288:intron | 25.0% |
| !!! | AGTTTTTTCTTTATCCAAAC+AGG | - | chr1.4:86544920-86544939 | MS.gene029288:CDS | 25.0% |
| !!! | CTAATAGAATTTTCTGAAGA+GGG | + | chr1.4:86546240-86546259 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAGGCATAAAAAC+AGG | + | chr1.4:86545059-86545078 | None:intergenic | 25.0% |
| !!! | TCTAATAGAATTTTCTGAAG+AGG | + | chr1.4:86546241-86546260 | None:intergenic | 25.0% |
| AAGCCACCTAAGAATAAAAA+GGG | - | chr1.4:86544636-86544655 | MS.gene029288:CDS | 30.0% | |
| AATTGAATTCCTTGATCTTG+TGG | + | chr1.4:86544614-86544633 | None:intergenic | 30.0% | |
| ACACCACTTTCATCTTAATT+AGG | + | chr1.4:86545667-86545686 | None:intergenic | 30.0% | |
| AGTCTAGAAACAGATTGATT+TGG | - | chr1.4:86545705-86545724 | MS.gene029288:CDS | 30.0% | |
| AGTTAACACGACACATAAAT+TGG | + | chr1.4:86545638-86545657 | None:intergenic | 30.0% | |
| ATGTGAAAATGAAGACAACA+AGG | + | chr1.4:86546289-86546308 | None:intergenic | 30.0% | |
| CAATCTATCTTTGACAAGTA+TGG | - | chr1.4:86546728-86546747 | MS.gene029288:intron | 30.0% | |
| GTCCAAAGTTAAAGAATTGT+TGG | - | chr1.4:86546865-86546884 | MS.gene029288:intron | 30.0% | |
| TATATACCAGATAACTAACC+TGG | + | chr1.4:86546357-86546376 | None:intergenic | 30.0% | |
| TATTGCCATATTCTTAGCTA+TGG | + | chr1.4:86545926-86545945 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAG+AGG | + | chr1.4:86544715-86544734 | None:intergenic | 30.0% | |
| TCTCCTAATTAAGATGAAAG+TGG | - | chr1.4:86545661-86545680 | MS.gene029288:CDS | 30.0% | |
| TGCAGTTACAAATGAGTATT+TGG | - | chr1.4:86545023-86545042 | MS.gene029288:CDS | 30.0% | |
| ! | AGCCAACAATTCTTTAACTT+TGG | + | chr1.4:86546870-86546889 | None:intergenic | 30.0% |
| ! | TTAGAAGCATATACACAGTT+TGG | + | chr1.4:86544561-86544580 | None:intergenic | 30.0% |
| ! | TTGTTGTCTTCATTTTCACA+TGG | - | chr1.4:86546288-86546307 | MS.gene029288:CDS | 30.0% |
| ! | TTTTTCCTGTCAAAGGTTAA+TGG | + | chr1.4:86546010-86546029 | None:intergenic | 30.0% |
| !! | ATCAGAATAACAAAAGTGCT+TGG | + | chr1.4:86546594-86546613 | None:intergenic | 30.0% |
| !! | CAAATCCAAGGTTGATAATT+TGG | - | chr1.4:86547183-86547202 | MS.gene029288:CDS | 30.0% |
| !!! | AATTTTGACTCAGAAAGAAC+GGG | - | chr1.4:86547063-86547082 | MS.gene029288:intron | 30.0% |
| !!! | CTATAGAGGTGACTTTTTTT+AGG | + | chr1.4:86545071-86545090 | None:intergenic | 30.0% |
| AAATTGCATCCACAAGATCA+AGG | - | chr1.4:86544602-86544621 | MS.gene029288:CDS | 35.0% | |
| AATTGCCAGAAAAGAATGTC+TGG | - | chr1.4:86545487-86545506 | MS.gene029288:intron | 35.0% | |
| ACTACATACTCTAGATGTCA+AGG | - | chr1.4:86546189-86546208 | MS.gene029288:intron | 35.0% | |
| ACTTGTCAAAGATAGATTGC+AGG | + | chr1.4:86546727-86546746 | None:intergenic | 35.0% | |
| AGATTCTCAGAAACATCCTT+TGG | + | chr1.4:86546458-86546477 | None:intergenic | 35.0% | |
| ATAGTGAAATGGAATCACTG+AGG | - | chr1.4:86547017-86547036 | MS.gene029288:intron | 35.0% | |
| ATGTCATCAAAACAGGTTAC+TGG | + | chr1.4:86546539-86546558 | None:intergenic | 35.0% | |
| CAAGCCACCTAAGAATAAAA+AGG | - | chr1.4:86544635-86544654 | MS.gene029288:CDS | 35.0% | |
| CACTAGTATGAACTCATTGA+TGG | + | chr1.4:86545872-86545891 | None:intergenic | 35.0% | |
| CCTAAGAATAAAAAGGGATC+TGG | - | chr1.4:86544642-86544661 | MS.gene029288:CDS | 35.0% | |
| GAGTTGAGTGATTTATAGCT+AGG | + | chr1.4:86545326-86545345 | None:intergenic | 35.0% | |
| GCTATCCAAATTATCAACCT+TGG | + | chr1.4:86547191-86547210 | None:intergenic | 35.0% | |
| GTTGCAATCAACCTCAATAA+TGG | - | chr1.4:86546832-86546851 | MS.gene029288:intron | 35.0% | |
| TCAAAGATAGATTGCAGGAT+GGG | + | chr1.4:86546722-86546741 | None:intergenic | 35.0% | |
| TCATTCCATTAACCTTTGAC+AGG | - | chr1.4:86546002-86546021 | MS.gene029288:intron | 35.0% | |
| TGAGATGAAGTCATCTGATT+TGG | - | chr1.4:86547141-86547160 | MS.gene029288:CDS | 35.0% | |
| TGGTAAGGATTAGATGCTTT+AGG | + | chr1.4:86545454-86545473 | None:intergenic | 35.0% | |
| TTCTCCAATGTCATCAAAAC+AGG | + | chr1.4:86546546-86546565 | None:intergenic | 35.0% | |
| TTTCATATCAGTTAGGCCAA+AGG | + | chr1.4:86545297-86545316 | None:intergenic | 35.0% | |
| TTTGACAAGTATGGCGATAT+AGG | - | chr1.4:86546737-86546756 | MS.gene029288:intron | 35.0% | |
| TTTGACAGGAAAAAGAAGCT+AGG | - | chr1.4:86546016-86546035 | MS.gene029288:intron | 35.0% | |
| ! | AAAAAGAGTATGCATCAAGC+AGG | + | chr1.4:86544680-86544699 | None:intergenic | 35.0% |
| ! | AAGATAAATGGCGCCAATTT+TGG | + | chr1.4:86546083-86546102 | None:intergenic | 35.0% |
| ! | AGTCAAAACAGAAGCATACA+TGG | + | chr1.4:86545158-86545177 | None:intergenic | 35.0% |
| ! | CCAGATCCCTTTTTATTCTT+AGG | + | chr1.4:86544645-86544664 | None:intergenic | 35.0% |
| ! | CTTTTTATTCTTAGGTGGCT+TGG | + | chr1.4:86544637-86544656 | None:intergenic | 35.0% |
| ! | GATCCCTTTTTATTCTTAGG+TGG | + | chr1.4:86544642-86544661 | None:intergenic | 35.0% |
| ! | GGTGTTATAGAAAGTGAGAT+AGG | - | chr1.4:86545388-86545407 | MS.gene029288:intron | 35.0% |
| ! | TAGCTTCTTTTTCCTGTCAA+AGG | + | chr1.4:86546017-86546036 | None:intergenic | 35.0% |
| ! | TTTTCCAAAGCTTTTCGCAA+AGG | - | chr1.4:86545367-86545386 | MS.gene029288:intron | 35.0% |
| !! | ATTTTGAGTGCATTCATGGT+AGG | + | chr1.4:86544586-86544605 | None:intergenic | 35.0% |
| !! | CTAGAAACAGATTGATTTGG+AGG | - | chr1.4:86545708-86545727 | MS.gene029288:CDS | 35.0% |
| !! | GGTACTATCTCATTGCTTTT+CGG | + | chr1.4:86546157-86546176 | None:intergenic | 35.0% |
| !! | TGCAATTTTGAGTGCATTCA+TGG | + | chr1.4:86544590-86544609 | None:intergenic | 35.0% |
| !! | TTTTGAGTGCATTCATGGTA+GGG | + | chr1.4:86544585-86544604 | None:intergenic | 35.0% |
| !!! | GTAACCTGTTTTGATGACAT+TGG | - | chr1.4:86546539-86546558 | MS.gene029288:intron | 35.0% |
| !!! | TGTTTTGATGACATTGGAGA+AGG | - | chr1.4:86546545-86546564 | MS.gene029288:intron | 35.0% |
| AAACACCATTTCTGCACTGT+TGG | - | chr1.4:86544970-86544989 | MS.gene029288:CDS | 40.0% | |
| AACACCTTTGCGAAAAGCTT+TGG | + | chr1.4:86545374-86545393 | None:intergenic | 40.0% | |
| AATGAGATAGTACCAGCTTC+TGG | - | chr1.4:86546163-86546182 | MS.gene029288:intron | 40.0% | |
| ACACAGTTTGGCATAACTCT+TGG | + | chr1.4:86544549-86544568 | None:intergenic | 40.0% | |
| ATACCTTGGCCTCTTTGAAT+TGG | - | chr1.4:86544703-86544722 | MS.gene029288:CDS | 40.0% | |
| CAATGACAAAGTCCAACCAA+AGG | - | chr1.4:86546439-86546458 | MS.gene029288:intron | 40.0% | |
| CAGATACAGACAAATCAAGC+AGG | - | chr1.4:86546485-86546504 | MS.gene029288:intron | 40.0% | |
| CAGGCTATCTATCAAATCCA+AGG | - | chr1.4:86547171-86547190 | MS.gene029288:CDS | 40.0% | |
| CATCACTGTCCTCATTATCA+CGG | + | chr1.4:86546622-86546641 | None:intergenic | 40.0% | |
| GAAGAAAAACACATGCACTC+AGG | - | chr1.4:86545424-86545443 | MS.gene029288:intron | 40.0% | |
| GTCAAAGATAGATTGCAGGA+TGG | + | chr1.4:86546723-86546742 | None:intergenic | 40.0% | |
| GTCTCTTGCCATTGTATCTA+TGG | - | chr1.4:86546408-86546427 | MS.gene029288:intron | 40.0% | |
| TATAGGAGAAAGCTGCCATT+TGG | - | chr1.4:86546754-86546773 | MS.gene029288:intron | 40.0% | |
| TCTCAGAAACATCCTTTGGT+TGG | + | chr1.4:86546454-86546473 | None:intergenic | 40.0% | |
| TGGAGCCATAGCTAAGAATA+TGG | - | chr1.4:86545918-86545937 | MS.gene029288:intron | 40.0% | |
| TGGAGGCTGAAAATAAACTG+TGG | - | chr1.4:86545725-86545744 | MS.gene029288:CDS | 40.0% | |
| TTCACATGGTATCTTCCAAC+CGG | + | chr1.4:86546686-86546705 | None:intergenic | 40.0% | |
| TTTACATCACACGCATGGTA+AGG | + | chr1.4:86545469-86545488 | None:intergenic | 40.0% | |
| TTTGGATAGCAGATCATTGC+TGG | - | chr1.4:86547201-86547220 | MS.gene029288:CDS | 40.0% | |
| ! | ACAGAAGCATACATGGAGAA+AGG | + | chr1.4:86545151-86545170 | None:intergenic | 40.0% |
| ! | AGAAAGCTGCCATTTGGAAT+CGG | - | chr1.4:86546760-86546779 | MS.gene029288:intron | 40.0% |
| ! | ATAAATGGCGCCAATTTTGG+AGG | + | chr1.4:86546080-86546099 | None:intergenic | 40.0% |
| ! | ATTTGGAATCGGTTGTGATG+CGG | - | chr1.4:86546771-86546790 | MS.gene029288:intron | 40.0% |
| ! | GATGTTTCTGAGAATCTTGC+CGG | - | chr1.4:86546461-86546480 | MS.gene029288:intron | 40.0% |
| ! | TGATGTTCTCCGTGATAATG+AGG | - | chr1.4:86546610-86546629 | MS.gene029288:intron | 40.0% |
| ! | TTGAGGTTGATTGCAACTCT+TGG | + | chr1.4:86546829-86546848 | None:intergenic | 40.0% |
| !! | CATCTGATTTGGAGAAGAAC+AGG | - | chr1.4:86547152-86547171 | MS.gene029288:CDS | 40.0% |
| !! | CTGCTTGATTTGTCTGTATC+TGG | + | chr1.4:86546487-86546506 | None:intergenic | 40.0% |
| !! | TTGATTTGTCTGTATCTGGC+CGG | + | chr1.4:86546483-86546502 | None:intergenic | 40.0% |
| AAGCCAATTCAAAGAGGCCA+AGG | + | chr1.4:86544709-86544728 | None:intergenic | 45.0% | |
| ACAGGCTGCCATAGATACAA+TGG | + | chr1.4:86546419-86546438 | None:intergenic | 45.0% | |
| CGCCATTTATCTTGCTGATG+CGG | - | chr1.4:86546090-86546109 | MS.gene029288:intron | 45.0% | |
| GAAGGTCTAACTACATCAGC+TGG | - | chr1.4:86546563-86546582 | MS.gene029288:intron | 45.0% | |
| GAGCAAAGCTTTCCTTCACA+TGG | + | chr1.4:86546700-86546719 | None:intergenic | 45.0% | |
| GGCAATTTACATCACACGCA+TGG | + | chr1.4:86545474-86545493 | None:intergenic | 45.0% | |
| GGTTGGAAGATACCATGTGA+AGG | - | chr1.4:86546685-86546704 | MS.gene029288:intron | 45.0% | |
| GGTTGGACTTTGTCATTGAC+AGG | + | chr1.4:86546437-86546456 | None:intergenic | 45.0% | |
| GTATGTAGTTCACCAGAAGC+TGG | + | chr1.4:86546178-86546197 | None:intergenic | 45.0% | |
| TAGGACCAACAGTGCAGAAA+TGG | + | chr1.4:86544978-86544997 | None:intergenic | 45.0% | |
| TGCCGCATCAGCAAGATAAA+TGG | + | chr1.4:86546095-86546114 | None:intergenic | 45.0% | |
| TTTGACTCAGAAAGAACGGG+AGG | - | chr1.4:86547066-86547085 | MS.gene029288:intron | 45.0% | |
| ! | AAGAGGGTGTGAGAAAAGAG+GGG | + | chr1.4:86546224-86546243 | None:intergenic | 45.0% |
| ! | AGAATGTCTGGAGCTGATTC+AGG | - | chr1.4:86545499-86545518 | MS.gene029288:intron | 45.0% |
| ! | CAGCTCCAGACATTCTTTTC+TGG | + | chr1.4:86545495-86545514 | None:intergenic | 45.0% |
| ! | GAAGAGGGTGTGAGAAAAGA+GGG | + | chr1.4:86546225-86546244 | None:intergenic | 45.0% |
| ! | GAGGACAGTGATGATGAAGA+GGG | - | chr1.4:86546629-86546648 | MS.gene029288:intron | 45.0% |
| ! | GCATCACAACCGATTCCAAA+TGG | + | chr1.4:86546772-86546791 | None:intergenic | 45.0% |
| ! | GGCTGACTCTGATAGTGAAA+TGG | - | chr1.4:86547006-86547025 | MS.gene029288:intron | 45.0% |
| ! | TCAGAGCCAGGTTAGTTATC+TGG | - | chr1.4:86546348-86546367 | MS.gene029288:CDS | 45.0% |
| ! | TGAAGAGGGTGTGAGAAAAG+AGG | + | chr1.4:86546226-86546245 | None:intergenic | 45.0% |
| ! | TGAGGACAGTGATGATGAAG+AGG | - | chr1.4:86546628-86546647 | MS.gene029288:intron | 45.0% |
| AGTGTTCCGGCCTCCAAAAT+TGG | - | chr1.4:86546067-86546086 | MS.gene029288:intron | 50.0% | |
| CCCAGTTCTTGACAGTGTTC+CGG | - | chr1.4:86546054-86546073 | MS.gene029288:intron | 50.0% | |
| CCGGAACACTGTCAAGAACT+GGG | + | chr1.4:86546057-86546076 | None:intergenic | 50.0% | |
| CTGTCAAGAACTGGGAGTTC+AGG | + | chr1.4:86546049-86546068 | None:intergenic | 50.0% | |
| GGTCTAACTACATCAGCTGG+TGG | - | chr1.4:86546566-86546585 | MS.gene029288:intron | 50.0% | |
| TGAAGAGGGAAGTGAGTCTG+TGG | - | chr1.4:86546643-86546662 | MS.gene029288:intron | 50.0% | |
| ! | ACAAAGATGGTGTCAGAGCC+AGG | - | chr1.4:86546336-86546355 | MS.gene029288:CDS | 50.0% |
| CATTGATGAGCACCAGTCCG+TGG | - | chr1.4:86546973-86546992 | MS.gene029288:intron | 55.0% | |
| GCCGGAACACTGTCAAGAAC+TGG | + | chr1.4:86546058-86546077 | None:intergenic | 55.0% | |
| !! | ATGGCGCCAATTTTGGAGGC+CGG | + | chr1.4:86546076-86546095 | None:intergenic | 55.0% |
| !! | GGTTTCTGAGACGCGTGTTC+CGG | - | chr1.4:86546664-86546683 | MS.gene029288:intron | 55.0% |
| CTGCTCAACTTCGCGTGACG+TGG | - | chr1.4:86546909-86546928 | MS.gene029288:intron | 60.0% | |
| TGATGAGCACCAGTCCGTGG+AGG | - | chr1.4:86546976-86546995 | MS.gene029288:intron | 60.0% | |
| ! | TCTGAGACGCGTGTTCCGGT+TGG | - | chr1.4:86546668-86546687 | MS.gene029288:intron | 60.0% |
| GTCAGCCTTCGCTGCCTCCA+CGG | + | chr1.4:86546993-86547012 | None:intergenic | 65.0% | |
| CCAGTCCGTGGAGGCAGCGA+AGG | - | chr1.4:86546985-86547004 | MS.gene029288:intron | 70.0% | |
| CCTTCGCTGCCTCCACGGAC+TGG | + | chr1.4:86546988-86547007 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86544531 | 86547237 | 86544531 | ID=MS.gene029288 |
| chr1.4 | mRNA | 86544531 | 86547237 | 86544531 | ID=MS.gene029288.t1;Parent=MS.gene029288 |
| chr1.4 | exon | 86547105 | 86547237 | 86547105 | ID=MS.gene029288.t1.exon1;Parent=MS.gene029288.t1 |
| chr1.4 | CDS | 86547105 | 86547237 | 86547105 | ID=cds.MS.gene029288.t1;Parent=MS.gene029288.t1 |
| chr1.4 | exon | 86546248 | 86546391 | 86546248 | ID=MS.gene029288.t1.exon2;Parent=MS.gene029288.t1 |
| chr1.4 | CDS | 86546248 | 86546391 | 86546248 | ID=cds.MS.gene029288.t1;Parent=MS.gene029288.t1 |
| chr1.4 | exon | 86545558 | 86545769 | 86545558 | ID=MS.gene029288.t1.exon3;Parent=MS.gene029288.t1 |
| chr1.4 | CDS | 86545558 | 86545769 | 86545558 | ID=cds.MS.gene029288.t1;Parent=MS.gene029288.t1 |
| chr1.4 | exon | 86544531 | 86545334 | 86544531 | ID=MS.gene029288.t1.exon4;Parent=MS.gene029288.t1 |
| chr1.4 | CDS | 86544531 | 86545334 | 86544531 | ID=cds.MS.gene029288.t1;Parent=MS.gene029288.t1 |
| Gene Sequence |
| Protein sequence |
