Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037275.t1 | XP_013470327.1 | 92.3 | 430 | 33 | 0 | 1 | 430 | 25 | 454 | 3.90E-199 | 704.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037275.t1 | A0A072VRU0 | 92.3 | 430 | 33 | 0 | 1 | 430 | 1 | 430 | 2.8e-199 | 704.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68141 | MS.gene037275 | PPI |
| MS.gene029288 | MS.gene037275 | PPI |
| MS.gene014205 | MS.gene037275 | PPI |
| MS.gene065021 | MS.gene037275 | PPI |
| MS.gene037275 | MS.gene029288 | PPI |
| MS.gene063094 | MS.gene037275 | PPI |
| MS.gene037275 | MS.gene68141 | PPI |
| MS.gene037275 | MS.gene68740 | PPI |
| MS.gene037275 | MS.gene74935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037275.t1 | MTR_1g112660 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 846 |
| MS.gene037275.t1 | MTR_1g112660 | 96.279 | 430 | 16 | 0 | 1 | 430 | 25 | 454 | 0.0 | 845 |
| MS.gene037275.t1 | MTR_1g112660 | 97.043 | 372 | 11 | 0 | 59 | 430 | 1 | 372 | 0.0 | 733 |
| MS.gene037275.t1 | MTR_3g118020 | 45.412 | 425 | 170 | 13 | 12 | 420 | 6 | 384 | 9.00e-85 | 265 |
| MS.gene037275.t1 | MTR_3g118020 | 47.813 | 343 | 125 | 11 | 92 | 420 | 5 | 307 | 5.31e-73 | 231 |
| MS.gene037275.t1 | MTR_8g089530 | 28.708 | 209 | 135 | 4 | 232 | 430 | 217 | 421 | 2.16e-14 | 75.1 |
| MS.gene037275.t1 | MTR_2g006000 | 29.082 | 196 | 122 | 5 | 248 | 430 | 233 | 424 | 7.88e-13 | 70.1 |
| MS.gene037275.t1 | MTR_8g089440 | 28.161 | 174 | 121 | 3 | 160 | 332 | 223 | 393 | 6.58e-12 | 67.8 |
| MS.gene037275.t1 | MTR_8g089480 | 28.161 | 174 | 121 | 3 | 160 | 332 | 164 | 334 | 8.90e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037275.t1 | AT2G16900 | 28.537 | 410 | 227 | 10 | 59 | 430 | 1 | 382 | 9.37e-39 | 144 |
| MS.gene037275.t1 | AT2G16900 | 28.537 | 410 | 227 | 10 | 59 | 430 | 1 | 382 | 9.37e-39 | 144 |
| MS.gene037275.t1 | AT2G16900 | 28.537 | 410 | 227 | 10 | 59 | 430 | 1 | 382 | 9.37e-39 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 1.03e-38 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 1.03e-38 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 1.03e-38 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 1.03e-38 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 216 | 398 | 1.26e-38 | 144 |
| MS.gene037275.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 219 | 401 | 1.28e-38 | 144 |
| MS.gene037275.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.28e-35 | 133 |
| MS.gene037275.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.28e-35 | 133 |
| MS.gene037275.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.28e-35 | 133 |
| MS.gene037275.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.28e-35 | 133 |
| MS.gene037275.t1 | AT4G38550 | 34.896 | 192 | 125 | 0 | 235 | 426 | 317 | 508 | 2.42e-34 | 134 |
| MS.gene037275.t1 | AT4G38550 | 34.896 | 192 | 125 | 0 | 235 | 426 | 359 | 550 | 3.86e-34 | 134 |
| MS.gene037275.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 4.11e-34 | 134 |
| MS.gene037275.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 4.11e-34 | 134 |
| MS.gene037275.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 449 | 649 | 4.48e-34 | 135 |
| MS.gene037275.t1 | AT5G11140 | 36.216 | 185 | 118 | 0 | 246 | 430 | 57 | 241 | 1.01e-33 | 127 |
| MS.gene037275.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 323 | 521 | 7.16e-32 | 127 |
| MS.gene037275.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 325 | 523 | 8.35e-32 | 127 |
| MS.gene037275.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 486 | 678 | 1.16e-31 | 128 |
| MS.gene037275.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 521 | 713 | 1.68e-31 | 127 |
| MS.gene037275.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 1.96e-31 | 127 |
| MS.gene037275.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 1.96e-31 | 127 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.47e-28 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.47e-28 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 225 | 411 | 1.63e-27 | 113 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 1.80e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 317 | 503 | 1.86e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 332 | 518 | 2.05e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 334 | 520 | 2.08e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.12e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 286 | 472 | 2.14e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 288 | 474 | 2.49e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 3.40e-27 | 114 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 281 | 467 | 3.50e-27 | 113 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 3.93e-27 | 113 |
| MS.gene037275.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 3.93e-27 | 113 |
Find 75 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCAAGGTTGATAATT+TGG | 0.133061 | 1.1:-79730192 | MS.gene037275:CDS |
| AAGATAAATGGCGCCAATTT+TGG | 0.217899 | 1.1:+79731295 | None:intergenic |
| CAAGCCACCTAAGAATAAAA+AGG | 0.248587 | 1.1:-79732670 | MS.gene037275:CDS |
| CTGCTTGATTTGTCTGTATC+TGG | 0.279669 | 1.1:+79730891 | None:intergenic |
| AGAATGTCTGGAGCTGATTC+AGG | 0.287049 | 1.1:-79731876 | MS.gene037275:intron |
| TGAGATGAAGTCATCTGATT+TGG | 0.311588 | 1.1:-79730234 | MS.gene037275:CDS |
| CAATCTATCTTTGACAAGTA+TGG | 0.315042 | 1.1:-79730647 | MS.gene037275:CDS |
| GTTGCAATCAACCTCAATAA+TGG | 0.352010 | 1.1:-79730543 | MS.gene037275:CDS |
| AGTGTTCCGGCCTCCAAAAT+TGG | 0.352728 | 1.1:-79731308 | MS.gene037275:CDS |
| ATGTCATCAAAACAGGTTAC+TGG | 0.372121 | 1.1:+79730839 | None:intergenic |
| TTTGGATAGCAGATCATTGC+TGG | 0.373557 | 1.1:-79730174 | MS.gene037275:CDS |
| AGCCAACAATTCCTTAACTT+TGG | 0.375480 | 1.1:+79730508 | None:intergenic |
| TGGTAAGGATTAGATGCTTT+AGG | 0.387405 | 1.1:+79731924 | None:intergenic |
| TTGAGGTTGATTGCAACTCT+TGG | 0.403873 | 1.1:+79730549 | None:intergenic |
| CTGTCAAGAACTGGGAGTTC+AGG | 0.405904 | 1.1:+79731329 | None:intergenic |
| GCCGGAACACTGTCAAGAAC+TGG | 0.406161 | 1.1:+79731320 | None:intergenic |
| TTCTCCAATGTCATCAAAAC+AGG | 0.411746 | 1.1:+79730832 | None:intergenic |
| GTCCAAAGTTAAGGAATTGT+TGG | 0.414758 | 1.1:-79730510 | MS.gene037275:CDS |
| ACACAGTTTGGCATAACTCT+TGG | 0.416359 | 1.1:+79732759 | None:intergenic |
| GGTTGGACTTTGTCATTGAC+AGG | 0.416998 | 1.1:+79730941 | None:intergenic |
| CCTTCGCTGCCTCCACGGAC+TGG | 0.417167 | 1.1:+79730390 | None:intergenic |
| TTTGACAAGTATGGCGATAT+AGG | 0.417915 | 1.1:-79730638 | MS.gene037275:CDS |
| CCCAGTTCTTGACAGTGTTC+CGG | 0.418245 | 1.1:-79731321 | MS.gene037275:CDS |
| CTTTGTTAATTCCATTATTG+AGG | 0.418558 | 1.1:+79730532 | None:intergenic |
| ATTAACAAAGTCCAAAGTTA+AGG | 0.424679 | 1.1:-79730519 | MS.gene037275:CDS |
| TGCCGCATCAGCAAGATAAA+TGG | 0.426980 | 1.1:+79731283 | None:intergenic |
| TTAGAAGCATATACACAGTT+TGG | 0.434446 | 1.1:+79732747 | None:intergenic |
| AGATTCTCAGAAACATCCTT+TGG | 0.438317 | 1.1:+79730920 | None:intergenic |
| TATAGGAGAAAGCTGCCATT+TGG | 0.447354 | 1.1:-79730621 | MS.gene037275:CDS |
| AATTGCCAGAAAAGAATGTC+TGG | 0.451422 | 1.1:-79731888 | MS.gene037275:CDS |
| GGCTGACTCTGATAGTGAAA+TGG | 0.452176 | 1.1:-79730369 | MS.gene037275:CDS |
| GGTTTCTGAGACGCGTGTTC+CGG | 0.453188 | 1.1:-79730711 | MS.gene037275:CDS |
| TTCACATGGTATCTTCCAAC+CGG | 0.459840 | 1.1:+79730692 | None:intergenic |
| ACTTGTCAAAGATAGATTGC+AGG | 0.471370 | 1.1:+79730651 | None:intergenic |
| GCTATCCAAATTATCAACCT+TGG | 0.473319 | 1.1:+79730187 | None:intergenic |
| TCTCAGAAACATCCTTTGGT+TGG | 0.476740 | 1.1:+79730924 | None:intergenic |
| AATTGAATTCCTTGATCTTG+TGG | 0.477003 | 1.1:+79732694 | None:intergenic |
| AGAAAGCTGCCATTTGGAAT+CGG | 0.478703 | 1.1:-79730615 | MS.gene037275:CDS |
| GAGGACAGTGATGATGAAGA+GGG | 0.480600 | 1.1:-79730746 | MS.gene037275:CDS |
| CGCCATTTATCTTGCTGATG+CGG | 0.483504 | 1.1:-79731285 | MS.gene037275:CDS |
| TCATTCCATTAACCTTTGAC+AGG | 0.484823 | 1.1:-79731373 | MS.gene037275:CDS |
| ATCAGAATAACAAAAGTGCT+TGG | 0.488484 | 1.1:+79730784 | None:intergenic |
| GTCAGCCTTCGCTGCCTCCA+CGG | 0.492054 | 1.1:+79730385 | None:intergenic |
| CCAGTCCGTGGAGGCAGCGA+AGG | 0.500128 | 1.1:-79730390 | MS.gene037275:CDS |
| AATGAGATAGTACCAGCTTC+TGG | 0.501090 | 1.1:-79731212 | MS.gene037275:CDS |
| TTGATTTGTCTGTATCTGGC+TGG | 0.507213 | 1.1:+79730895 | None:intergenic |
| GGTGTTATAGAAAGTGAGAT+AGG | 0.519458 | 1.1:-79731987 | MS.gene037275:CDS |
| CTGCTCAACTTCGCGTGACG+TGG | 0.519956 | 1.1:-79730466 | MS.gene037275:CDS |
| TTTACATCACACGCATGGTA+AGG | 0.525868 | 1.1:+79731909 | None:intergenic |
| GCATCACAACCGATTCCAAA+TGG | 0.527475 | 1.1:+79730606 | None:intergenic |
| GAAGGTCTAACTACATCAGC+TGG | 0.534751 | 1.1:-79730812 | MS.gene037275:CDS |
| TCAAAGATAGATTGCAGGAT+GGG | 0.535446 | 1.1:+79730656 | None:intergenic |
| TGAGGACAGTGATGATGAAG+AGG | 0.538033 | 1.1:-79730747 | MS.gene037275:CDS |
| TGATGTTCTCCGTGATAATG+AGG | 0.548223 | 1.1:-79730765 | MS.gene037275:CDS |
| AAATTGCATCCACAAGATCA+AGG | 0.554464 | 1.1:-79732703 | MS.gene037275:CDS |
| GTATGTAGTTCACCAGAAGC+TGG | 0.576929 | 1.1:+79731200 | None:intergenic |
| TCTGAGACGCGTGTTCCGGT+TGG | 0.579971 | 1.1:-79730707 | MS.gene037275:CDS |
| CAGGCTATCTATCAAATCCA+AGG | 0.583999 | 1.1:-79730204 | MS.gene037275:CDS |
| CCGGAACACTGTCAAGAACT+GGG | 0.591723 | 1.1:+79731321 | None:intergenic |
| GTCAAAGATAGATTGCAGGA+TGG | 0.607166 | 1.1:+79730655 | None:intergenic |
| GGCAATTTACATCACACGCA+TGG | 0.610083 | 1.1:+79731904 | None:intergenic |
| CAGATACAGACAAATCAAGC+AGG | 0.612231 | 1.1:-79730890 | MS.gene037275:CDS |
| GAGCAAAGCTTTCCTTCACA+TGG | 0.615016 | 1.1:+79730678 | None:intergenic |
| CATTGATGAGCACCAGTCCG+TGG | 0.628033 | 1.1:-79730402 | MS.gene037275:CDS |
| CATCACTGTCCTCATTATCA+CGG | 0.628549 | 1.1:+79730756 | None:intergenic |
| ACTACATACTCTAGATGTCA+AGG | 0.630737 | 1.1:-79731186 | MS.gene037275:intron |
| ATTTGGAATCGGTTGTGATG+CGG | 0.643613 | 1.1:-79730604 | MS.gene037275:CDS |
| GGTCTAACTACATCAGCTGG+TGG | 0.651697 | 1.1:-79730809 | MS.gene037275:CDS |
| TTTGACTCAGAAAGAACGGG+AGG | 0.654627 | 1.1:-79730309 | MS.gene037275:CDS |
| CAATGACAAAGTCCAACCAA+AGG | 0.663967 | 1.1:-79730936 | MS.gene037275:CDS |
| TGAAGAGGGAAGTGAGTCTG+TGG | 0.676872 | 1.1:-79730732 | MS.gene037275:CDS |
| GGTTGGAAGATACCATGTGA+AGG | 0.677016 | 1.1:-79730690 | MS.gene037275:CDS |
| ACTTCATCTCAAGCTCGCTG+AGG | 0.681126 | 1.1:+79730246 | None:intergenic |
| TGATGAGCACCAGTCCGTGG+AGG | 0.694249 | 1.1:-79730399 | MS.gene037275:CDS |
| ATAGTGAAATGGAATCACTG+AGG | 0.783003 | 1.1:-79730358 | MS.gene037275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATATTTAACAAAGA+TGG | - | chr1.1:79731882-79731901 | MS.gene037275:CDS | 10.0% |
| !! | ATATTAAAACAAAAATTGAA+GGG | - | chr1.1:79732654-79732673 | MS.gene037275:intron | 10.0% |
| !! | AGAGATTAAAAATTTATGAT+AGG | + | chr1.1:79730627-79730646 | None:intergenic | 15.0% |
| !! | GATATTAAAACAAAAATTGA+AGG | - | chr1.1:79732653-79732672 | MS.gene037275:intron | 15.0% |
| !! | TAATATAGTTTAGTTATGTA+TGG | - | chr1.1:79730573-79730592 | MS.gene037275:CDS | 15.0% |
| !!! | TTGTCATAATATTTTGATAT+TGG | + | chr1.1:79731680-79731699 | None:intergenic | 15.0% |
| !! | AAATTGCAGATAAAAAATGA+AGG | + | chr1.1:79731088-79731107 | None:intergenic | 20.0% |
| !! | AATTGCAGATAAAAAATGAA+GGG | + | chr1.1:79731087-79731106 | None:intergenic | 20.0% |
| !! | ATATTATGACAAGAAAAAGT+TGG | - | chr1.1:79731688-79731707 | MS.gene037275:intron | 20.0% |
| !! | TTTGTCAACTTACAAATATT+TGG | - | chr1.1:79731457-79731476 | MS.gene037275:intron | 20.0% |
| !!! | ATACTCTTTTTAATATACCT+TGG | - | chr1.1:79730318-79730337 | MS.gene037275:CDS | 20.0% |
| !!! | CATTTTTTATCTGCAATTTA+TGG | - | chr1.1:79731089-79731108 | MS.gene037275:intron | 20.0% |
| !!! | TATTTTCATATAAGCTATCA+TGG | + | chr1.1:79730444-79730463 | None:intergenic | 20.0% |
| ! | AATAACTAAGTGTTCATTCA+TGG | - | chr1.1:79731501-79731520 | MS.gene037275:intron | 25.0% |
| ! | ACTAAACTATATTACCTGTT+TGG | + | chr1.1:79730567-79730586 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTCCAAAGTTA+AGG | - | chr1.1:79732415-79732434 | MS.gene037275:intron | 25.0% |
| ! | CTACAATCTTCTTAAATTGT+AGG | - | chr1.1:79731536-79731555 | MS.gene037275:intron | 25.0% |
| ! | CTATTGATATTAGCACATAT+GGG | - | chr1.1:79730370-79730389 | MS.gene037275:CDS | 25.0% |
| ! | CTTTGTTAATTCCATTATTG+AGG | + | chr1.1:79732405-79732424 | None:intergenic | 25.0% |
| ! | GAAAGAACTAGAATCAAAAA+TGG | - | chr1.1:79732598-79732617 | MS.gene037275:intron | 25.0% |
| ! | GATAAACACTGATACTAAAA+GGG | - | chr1.1:79730520-79730539 | MS.gene037275:CDS | 25.0% |
| ! | GCAATTATTTCATATCAGTT+AGG | + | chr1.1:79730863-79730882 | None:intergenic | 25.0% |
| ! | TATAATCGATACAACTATAG+AGG | + | chr1.1:79730715-79730734 | None:intergenic | 25.0% |
| ! | TCTATTGATATTAGCACATA+TGG | - | chr1.1:79730369-79730388 | MS.gene037275:CDS | 25.0% |
| ! | TGATAAACACTGATACTAAA+AGG | - | chr1.1:79730519-79730538 | MS.gene037275:CDS | 25.0% |
| ! | TTAACTATATGCTATTGAGA+AGG | + | chr1.1:79731944-79731963 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTGGAAAACAAAA+AGG | + | chr1.1:79730921-79730940 | None:intergenic | 25.0% |
| !!! | AAATTTTGACTCAGAAAGAA+CGG | - | chr1.1:79732621-79732640 | MS.gene037275:intron | 25.0% |
| !!! | AGTTTTTTCTTTATCCAAAC+AGG | - | chr1.1:79730550-79730569 | MS.gene037275:CDS | 25.0% |
| !!! | CTAATAGAATTTTCTGAAGA+GGG | + | chr1.1:79731799-79731818 | None:intergenic | 25.0% |
| !!! | CTATAGAGGTTACTTTTTTT+AGG | + | chr1.1:79730701-79730720 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAGGCATAAAAAC+AGG | + | chr1.1:79730689-79730708 | None:intergenic | 25.0% |
| !!! | GACTTGTTATATATATCTGT+AGG | - | chr1.1:79730804-79730823 | MS.gene037275:CDS | 25.0% |
| !!! | TCTAATAGAATTTTCTGAAG+AGG | + | chr1.1:79731800-79731819 | None:intergenic | 25.0% |
| AAGCCACCTAAGAATAAAAA+GGG | - | chr1.1:79730265-79730284 | MS.gene037275:CDS | 30.0% | |
| AATTGAATTCCTTGATCTTG+TGG | + | chr1.1:79730243-79730262 | None:intergenic | 30.0% | |
| ACACCACTTTCATCTTAATT+AGG | + | chr1.1:79731226-79731245 | None:intergenic | 30.0% | |
| AGTCTAGAAACAGATTGATT+TGG | - | chr1.1:79731264-79731283 | MS.gene037275:CDS | 30.0% | |
| AGTTAACACGACACATAAAT+TGG | + | chr1.1:79731197-79731216 | None:intergenic | 30.0% | |
| ATGTGAAAATGAAGACAACA+AGG | + | chr1.1:79731848-79731867 | None:intergenic | 30.0% | |
| CAATCTATCTTTGACAAGTA+TGG | - | chr1.1:79732287-79732306 | MS.gene037275:intron | 30.0% | |
| TATTGCCATATTCTTAGCTA+TGG | + | chr1.1:79731485-79731504 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAG+AGG | + | chr1.1:79730344-79730363 | None:intergenic | 30.0% | |
| TCTCCTAATTAAGATGAAAG+TGG | - | chr1.1:79731220-79731239 | MS.gene037275:CDS | 30.0% | |
| TGCAGTTACAAATGAGTATT+TGG | - | chr1.1:79730653-79730672 | MS.gene037275:CDS | 30.0% | |
| ! | TTAGAAGCATATACACAGTT+TGG | + | chr1.1:79730190-79730209 | None:intergenic | 30.0% |
| ! | TTGTTGTCTTCATTTTCACA+TGG | - | chr1.1:79731847-79731866 | MS.gene037275:intron | 30.0% |
| ! | TTTTTCCTGTCAAAGGTTAA+TGG | + | chr1.1:79731569-79731588 | None:intergenic | 30.0% |
| !! | ATCAGAATAACAAAAGTGCT+TGG | + | chr1.1:79732153-79732172 | None:intergenic | 30.0% |
| !! | CAAATCCAAGGTTGATAATT+TGG | - | chr1.1:79732742-79732761 | MS.gene037275:CDS | 30.0% |
| !!! | AATTTTGACTCAGAAAGAAC+GGG | - | chr1.1:79732622-79732641 | MS.gene037275:intron | 30.0% |
| AAATTGCATCCACAAGATCA+AGG | - | chr1.1:79730231-79730250 | MS.gene037275:CDS | 35.0% | |
| AATTGCCAGAAAAGAATGTC+TGG | - | chr1.1:79731046-79731065 | MS.gene037275:intron | 35.0% | |
| ACTACATACTCTAGATGTCA+AGG | - | chr1.1:79731748-79731767 | MS.gene037275:intron | 35.0% | |
| ACTTGTCAAAGATAGATTGC+AGG | + | chr1.1:79732286-79732305 | None:intergenic | 35.0% | |
| AGATTCTCAGAAACATCCTT+TGG | + | chr1.1:79732017-79732036 | None:intergenic | 35.0% | |
| AGCCAACAATTCCTTAACTT+TGG | + | chr1.1:79732429-79732448 | None:intergenic | 35.0% | |
| ATAGTGAAATGGAATCACTG+AGG | - | chr1.1:79732576-79732595 | MS.gene037275:intron | 35.0% | |
| ATGTCATCAAAACAGGTTAC+TGG | + | chr1.1:79732098-79732117 | None:intergenic | 35.0% | |
| CAAGCCACCTAAGAATAAAA+AGG | - | chr1.1:79730264-79730283 | MS.gene037275:CDS | 35.0% | |
| CACTAGTATGAACTCATTGA+TGG | + | chr1.1:79731431-79731450 | None:intergenic | 35.0% | |
| CCTAAGAATAAAAAGGGATC+TGG | - | chr1.1:79730271-79730290 | MS.gene037275:CDS | 35.0% | |
| GAGTTGAGTGATTTATAGCT+AGG | + | chr1.1:79730885-79730904 | None:intergenic | 35.0% | |
| GCTATCCAAATTATCAACCT+TGG | + | chr1.1:79732750-79732769 | None:intergenic | 35.0% | |
| GTCCAAAGTTAAGGAATTGT+TGG | - | chr1.1:79732424-79732443 | MS.gene037275:intron | 35.0% | |
| GTTGCAATCAACCTCAATAA+TGG | - | chr1.1:79732391-79732410 | MS.gene037275:intron | 35.0% | |
| TCAAAGATAGATTGCAGGAT+GGG | + | chr1.1:79732281-79732300 | None:intergenic | 35.0% | |
| TCATTCCATTAACCTTTGAC+AGG | - | chr1.1:79731561-79731580 | MS.gene037275:intron | 35.0% | |
| TGAGATGAAGTCATCTGATT+TGG | - | chr1.1:79732700-79732719 | MS.gene037275:CDS | 35.0% | |
| TGGTAAGGATTAGATGCTTT+AGG | + | chr1.1:79731013-79731032 | None:intergenic | 35.0% | |
| TTCTCCAATGTCATCAAAAC+AGG | + | chr1.1:79732105-79732124 | None:intergenic | 35.0% | |
| TTTCATATCAGTTAGGCGAA+AGG | + | chr1.1:79730856-79730875 | None:intergenic | 35.0% | |
| TTTGACAAGTATGGCGATAT+AGG | - | chr1.1:79732296-79732315 | MS.gene037275:intron | 35.0% | |
| TTTGACAGGAAAAAGAAGCT+AGG | - | chr1.1:79731575-79731594 | MS.gene037275:intron | 35.0% | |
| ! | AAAAAGAGTATGCATCAAGC+AGG | + | chr1.1:79730309-79730328 | None:intergenic | 35.0% |
| ! | AAGATAAATGGCGCCAATTT+TGG | + | chr1.1:79731642-79731661 | None:intergenic | 35.0% |
| ! | AGTCAAAACAGAAGCATACA+TGG | + | chr1.1:79730788-79730807 | None:intergenic | 35.0% |
| ! | CCAGATCCCTTTTTATTCTT+AGG | + | chr1.1:79730274-79730293 | None:intergenic | 35.0% |
| ! | CTTTTTATTCTTAGGTGGCT+TGG | + | chr1.1:79730266-79730285 | None:intergenic | 35.0% |
| ! | GATCCCTTTTTATTCTTAGG+TGG | + | chr1.1:79730271-79730290 | None:intergenic | 35.0% |
| ! | GGTGTTATAGAAAGTGAGAT+AGG | - | chr1.1:79730947-79730966 | MS.gene037275:intron | 35.0% |
| ! | TAGCTTCTTTTTCCTGTCAA+AGG | + | chr1.1:79731576-79731595 | None:intergenic | 35.0% |
| ! | TTTAACAAAGATGGTGTCAG+AGG | - | chr1.1:79731891-79731910 | MS.gene037275:CDS | 35.0% |
| ! | TTTTCCAAAGCTTTTCGCAA+AGG | - | chr1.1:79730926-79730945 | MS.gene037275:CDS | 35.0% |
| !! | ATTTTGAGTGCATTCATGGT+AGG | + | chr1.1:79730215-79730234 | None:intergenic | 35.0% |
| !! | CATCTGATTTGGAGAAAAAC+AGG | - | chr1.1:79732711-79732730 | MS.gene037275:CDS | 35.0% |
| !! | CTAGAAACAGATTGATTTGG+AGG | - | chr1.1:79731267-79731286 | MS.gene037275:CDS | 35.0% |
| !! | GGTACTATCTCATTGCTTTT+CGG | + | chr1.1:79731716-79731735 | None:intergenic | 35.0% |
| !! | TGCAATTTTGAGTGCATTCA+TGG | + | chr1.1:79730219-79730238 | None:intergenic | 35.0% |
| !! | TTTTGAGTGCATTCATGGTA+GGG | + | chr1.1:79730214-79730233 | None:intergenic | 35.0% |
| !!! | GTAACCTGTTTTGATGACAT+TGG | - | chr1.1:79732098-79732117 | MS.gene037275:intron | 35.0% |
| !!! | TGTTTTGATGACATTGGAGA+AGG | - | chr1.1:79732104-79732123 | MS.gene037275:intron | 35.0% |
| AAACACCATTTCTGCACTGT+TGG | - | chr1.1:79730600-79730619 | MS.gene037275:CDS | 40.0% | |
| AACACCTTTGCGAAAAGCTT+TGG | + | chr1.1:79730933-79730952 | None:intergenic | 40.0% | |
| AATGAGATAGTACCAGCTTC+TGG | - | chr1.1:79731722-79731741 | MS.gene037275:intron | 40.0% | |
| ACACAGTTTGGCATAACTCT+TGG | + | chr1.1:79730178-79730197 | None:intergenic | 40.0% | |
| ATACCTTGGCCTCTTTGAAT+TGG | - | chr1.1:79730332-79730351 | MS.gene037275:CDS | 40.0% | |
| CAATGACAAAGTCCAACCAA+AGG | - | chr1.1:79731998-79732017 | MS.gene037275:CDS | 40.0% | |
| CAGATACAGACAAATCAAGC+AGG | - | chr1.1:79732044-79732063 | MS.gene037275:intron | 40.0% | |
| CAGGCTATCTATCAAATCCA+AGG | - | chr1.1:79732730-79732749 | MS.gene037275:CDS | 40.0% | |
| CATCACTGTCCTCATTATCA+CGG | + | chr1.1:79732181-79732200 | None:intergenic | 40.0% | |
| GAAGAAAAACACATGCACTC+AGG | - | chr1.1:79730983-79731002 | MS.gene037275:intron | 40.0% | |
| GTCAAAGATAGATTGCAGGA+TGG | + | chr1.1:79732282-79732301 | None:intergenic | 40.0% | |
| GTCTCTTGCCATTGTATCTA+TGG | - | chr1.1:79731967-79731986 | MS.gene037275:CDS | 40.0% | |
| TATAGGAGAAAGCTGCCATT+TGG | - | chr1.1:79732313-79732332 | MS.gene037275:intron | 40.0% | |
| TCTCAGAAACATCCTTTGGT+TGG | + | chr1.1:79732013-79732032 | None:intergenic | 40.0% | |
| TGGAGCCATAGCTAAGAATA+TGG | - | chr1.1:79731477-79731496 | MS.gene037275:intron | 40.0% | |
| TGGAGGCTGAAAATAAACTG+TGG | - | chr1.1:79731284-79731303 | MS.gene037275:CDS | 40.0% | |
| TTCACATGGTATCTTCCAAC+CGG | + | chr1.1:79732245-79732264 | None:intergenic | 40.0% | |
| TTTACATCACACGCATGGTA+AGG | + | chr1.1:79731028-79731047 | None:intergenic | 40.0% | |
| TTTGGATAGCAGATCATTGC+TGG | - | chr1.1:79732760-79732779 | MS.gene037275:CDS | 40.0% | |
| ! | ACAGAAGCATACATGGAGAA+AGG | + | chr1.1:79730781-79730800 | None:intergenic | 40.0% |
| ! | AGAAAGCTGCCATTTGGAAT+CGG | - | chr1.1:79732319-79732338 | MS.gene037275:intron | 40.0% |
| ! | ATAAATGGCGCCAATTTTGG+AGG | + | chr1.1:79731639-79731658 | None:intergenic | 40.0% |
| ! | ATTTGGAATCGGTTGTGATG+CGG | - | chr1.1:79732330-79732349 | MS.gene037275:intron | 40.0% |
| ! | TGATGTTCTCCGTGATAATG+AGG | - | chr1.1:79732169-79732188 | MS.gene037275:intron | 40.0% |
| ! | TTGAGGTTGATTGCAACTCT+TGG | + | chr1.1:79732388-79732407 | None:intergenic | 40.0% |
| !! | CTGCTTGATTTGTCTGTATC+TGG | + | chr1.1:79732046-79732065 | None:intergenic | 40.0% |
| !! | TTGATTTGTCTGTATCTGGC+TGG | + | chr1.1:79732042-79732061 | None:intergenic | 40.0% |
| AAGCCAATTCAAAGAGGCCA+AGG | + | chr1.1:79730338-79730357 | None:intergenic | 45.0% | |
| ACAGGCTGCCATAGATACAA+TGG | + | chr1.1:79731978-79731997 | None:intergenic | 45.0% | |
| CGCCATTTATCTTGCTGATG+CGG | - | chr1.1:79731649-79731668 | MS.gene037275:intron | 45.0% | |
| GAAGGTCTAACTACATCAGC+TGG | - | chr1.1:79732122-79732141 | MS.gene037275:intron | 45.0% | |
| GAGCAAAGCTTTCCTTCACA+TGG | + | chr1.1:79732259-79732278 | None:intergenic | 45.0% | |
| GGCAATTTACATCACACGCA+TGG | + | chr1.1:79731033-79731052 | None:intergenic | 45.0% | |
| GGTTGGAAGATACCATGTGA+AGG | - | chr1.1:79732244-79732263 | MS.gene037275:intron | 45.0% | |
| GGTTGGACTTTGTCATTGAC+AGG | + | chr1.1:79731996-79732015 | None:intergenic | 45.0% | |
| GTATGTAGTTCACCAGAAGC+TGG | + | chr1.1:79731737-79731756 | None:intergenic | 45.0% | |
| TAGGACCAACAGTGCAGAAA+TGG | + | chr1.1:79730608-79730627 | None:intergenic | 45.0% | |
| TGCCGCATCAGCAAGATAAA+TGG | + | chr1.1:79731654-79731673 | None:intergenic | 45.0% | |
| TTTGACTCAGAAAGAACGGG+AGG | - | chr1.1:79732625-79732644 | MS.gene037275:intron | 45.0% | |
| ! | AAGAGGGTGTGAGAAAAGAG+GGG | + | chr1.1:79731783-79731802 | None:intergenic | 45.0% |
| ! | AGAATGTCTGGAGCTGATTC+AGG | - | chr1.1:79731058-79731077 | MS.gene037275:intron | 45.0% |
| ! | CAGCTCCAGACATTCTTTTC+TGG | + | chr1.1:79731054-79731073 | None:intergenic | 45.0% |
| ! | GAAGAGGGTGTGAGAAAAGA+GGG | + | chr1.1:79731784-79731803 | None:intergenic | 45.0% |
| ! | GAGGACAGTGATGATGAAGA+GGG | - | chr1.1:79732188-79732207 | MS.gene037275:intron | 45.0% |
| ! | GCATCACAACCGATTCCAAA+TGG | + | chr1.1:79732331-79732350 | None:intergenic | 45.0% |
| ! | GGCTGACTCTGATAGTGAAA+TGG | - | chr1.1:79732565-79732584 | MS.gene037275:intron | 45.0% |
| ! | TCAGAGGCAGGTTAGTTATC+TGG | - | chr1.1:79731907-79731926 | MS.gene037275:CDS | 45.0% |
| ! | TGAAGAGGGTGTGAGAAAAG+AGG | + | chr1.1:79731785-79731804 | None:intergenic | 45.0% |
| ! | TGAGGACAGTGATGATGAAG+AGG | - | chr1.1:79732187-79732206 | MS.gene037275:intron | 45.0% |
| ACTTCATCTCAAGCTCGCTG+AGG | + | chr1.1:79732691-79732710 | None:intergenic | 50.0% | |
| AGTGTTCCGGCCTCCAAAAT+TGG | - | chr1.1:79731626-79731645 | MS.gene037275:intron | 50.0% | |
| CCCAGTTCTTGACAGTGTTC+CGG | - | chr1.1:79731613-79731632 | MS.gene037275:intron | 50.0% | |
| CCGGAACACTGTCAAGAACT+GGG | + | chr1.1:79731616-79731635 | None:intergenic | 50.0% | |
| CTGTCAAGAACTGGGAGTTC+AGG | + | chr1.1:79731608-79731627 | None:intergenic | 50.0% | |
| GGTCTAACTACATCAGCTGG+TGG | - | chr1.1:79732125-79732144 | MS.gene037275:intron | 50.0% | |
| TGAAGAGGGAAGTGAGTCTG+TGG | - | chr1.1:79732202-79732221 | MS.gene037275:intron | 50.0% | |
| ! | ACAAAGATGGTGTCAGAGGC+AGG | - | chr1.1:79731895-79731914 | MS.gene037275:CDS | 50.0% |
| CATTGATGAGCACCAGTCCG+TGG | - | chr1.1:79732532-79732551 | MS.gene037275:intron | 55.0% | |
| GCCGGAACACTGTCAAGAAC+TGG | + | chr1.1:79731617-79731636 | None:intergenic | 55.0% | |
| !! | ATGGCGCCAATTTTGGAGGC+CGG | + | chr1.1:79731635-79731654 | None:intergenic | 55.0% |
| !! | GGTTTCTGAGACGCGTGTTC+CGG | - | chr1.1:79732223-79732242 | MS.gene037275:intron | 55.0% |
| CTGCTCAACTTCGCGTGACG+TGG | - | chr1.1:79732468-79732487 | MS.gene037275:intron | 60.0% | |
| TGATGAGCACCAGTCCGTGG+AGG | - | chr1.1:79732535-79732554 | MS.gene037275:intron | 60.0% | |
| ! | TCTGAGACGCGTGTTCCGGT+TGG | - | chr1.1:79732227-79732246 | MS.gene037275:intron | 60.0% |
| GTCAGCCTTCGCTGCCTCCA+CGG | + | chr1.1:79732552-79732571 | None:intergenic | 65.0% | |
| CCAGTCCGTGGAGGCAGCGA+AGG | - | chr1.1:79732544-79732563 | MS.gene037275:intron | 70.0% | |
| CCTTCGCTGCCTCCACGGAC+TGG | + | chr1.1:79732547-79732566 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79730160 | 79732796 | 79730160 | ID=MS.gene037275 |
| chr1.1 | mRNA | 79730160 | 79732796 | 79730160 | ID=MS.gene037275.t1;Parent=MS.gene037275 |
| chr1.1 | exon | 79732664 | 79732796 | 79732664 | ID=MS.gene037275.t1.exon1;Parent=MS.gene037275.t1 |
| chr1.1 | CDS | 79732664 | 79732796 | 79732664 | ID=cds.MS.gene037275.t1;Parent=MS.gene037275.t1 |
| chr1.1 | exon | 79731877 | 79732020 | 79731877 | ID=MS.gene037275.t1.exon2;Parent=MS.gene037275.t1 |
| chr1.1 | CDS | 79731877 | 79732020 | 79731877 | ID=cds.MS.gene037275.t1;Parent=MS.gene037275.t1 |
| chr1.1 | exon | 79731187 | 79731398 | 79731187 | ID=MS.gene037275.t1.exon3;Parent=MS.gene037275.t1 |
| chr1.1 | CDS | 79731187 | 79731398 | 79731187 | ID=cds.MS.gene037275.t1;Parent=MS.gene037275.t1 |
| chr1.1 | exon | 79730160 | 79730963 | 79730160 | ID=MS.gene037275.t1.exon4;Parent=MS.gene037275.t1 |
| chr1.1 | CDS | 79730160 | 79730963 | 79730160 | ID=cds.MS.gene037275.t1;Parent=MS.gene037275.t1 |
| Gene Sequence |
| Protein sequence |
