Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063094.t1 | XP_003604055.2 | 84.3 | 396 | 42 | 3 | 5 | 393 | 3 | 385 | 7.00E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063094.t1 | G7J8J7 | 84.3 | 396 | 42 | 3 | 5 | 393 | 3 | 385 | 5.1e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene063094 | 0.840148 | 1.04E-57 | -1.69E-46 |
| MS.gene050148 | MS.gene063094 | 0.823372 | 1.44E-53 | -1.69E-46 |
| MS.gene050961 | MS.gene063094 | 0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene051959 | MS.gene063094 | 0.849091 | 4.04E-60 | -1.69E-46 |
| MS.gene051960 | MS.gene063094 | 0.839054 | 1.99E-57 | -1.69E-46 |
| MS.gene052053 | MS.gene063094 | 0.813975 | 1.95E-51 | -1.69E-46 |
| MS.gene052570 | MS.gene063094 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene053601 | MS.gene063094 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene053932 | MS.gene063094 | 0.822608 | 2.16E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene063094 | 0.826515 | 2.60E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene063094 | 0.818729 | 1.68E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene063094 | 0.820111 | 8.15E-53 | -1.69E-46 |
| MS.gene05861 | MS.gene063094 | 0.832292 | 1.03E-55 | -1.69E-46 |
| MS.gene05862 | MS.gene063094 | 0.830001 | 3.76E-55 | -1.69E-46 |
| MS.gene05969 | MS.gene063094 | 0.829882 | 4.01E-55 | -1.69E-46 |
| MS.gene06023 | MS.gene063094 | 0.84629 | 2.38E-59 | -1.69E-46 |
| MS.gene06061 | MS.gene063094 | 0.832449 | 9.39E-56 | -1.69E-46 |
| MS.gene061045 | MS.gene063094 | 0.811112 | 8.24E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene063094 | 0.833199 | 6.12E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063094 | MS.gene029288 | PPI |
| MS.gene063094 | MS.gene68740 | PPI |
| MS.gene063094 | MS.gene014205 | PPI |
| MS.gene063094 | MS.gene68141 | PPI |
| MS.gene063094 | MS.gene74935 | PPI |
| MS.gene063094 | MS.gene037275 | PPI |
| MS.gene063094 | MS.gene065021 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063094.t1 | MTR_3g118020 | 89.899 | 396 | 20 | 5 | 5 | 393 | 3 | 385 | 0.0 | 653 |
| MS.gene063094.t1 | MTR_3g118020 | 91.798 | 317 | 13 | 2 | 77 | 393 | 5 | 308 | 0.0 | 577 |
| MS.gene063094.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 8 | 392 | 12 | 420 | 2.05e-106 | 320 |
| MS.gene063094.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 8 | 392 | 36 | 444 | 4.66e-106 | 320 |
| MS.gene063094.t1 | MTR_1g112660 | 49.333 | 375 | 141 | 13 | 52 | 392 | 3 | 362 | 5.35e-99 | 299 |
| MS.gene063094.t1 | MTR_8g089440 | 29.213 | 178 | 110 | 6 | 160 | 330 | 253 | 421 | 7.00e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 11 | 386 | 1.43e-39 | 145 |
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 11 | 386 | 1.43e-39 | 145 |
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 11 | 386 | 1.43e-39 | 145 |
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 11 | 386 | 1.43e-39 | 145 |
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 26 | 401 | 2.02e-39 | 145 |
| MS.gene063094.t1 | AT4G35110 | 30.732 | 410 | 226 | 13 | 8 | 393 | 23 | 398 | 2.41e-39 | 145 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 7.28e-34 | 130 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 7.28e-34 | 130 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 196 | 356 | 7.28e-34 | 130 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 9.84e-34 | 127 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 9.84e-34 | 127 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 9.84e-34 | 127 |
| MS.gene063094.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 204 | 369 | 107 | 267 | 9.84e-34 | 127 |
| MS.gene063094.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 209 | 392 | 557 | 738 | 2.89e-28 | 117 |
| MS.gene063094.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 209 | 392 | 557 | 738 | 2.89e-28 | 117 |
| MS.gene063094.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 203 | 369 | 416 | 583 | 3.02e-28 | 117 |
| MS.gene063094.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 203 | 369 | 416 | 583 | 3.02e-28 | 117 |
| MS.gene063094.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 203 | 369 | 315 | 482 | 3.68e-28 | 115 |
| MS.gene063094.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 203 | 369 | 453 | 620 | 3.88e-28 | 116 |
| MS.gene063094.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 209 | 392 | 522 | 703 | 3.91e-28 | 117 |
| MS.gene063094.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 203 | 369 | 357 | 524 | 4.49e-28 | 116 |
| MS.gene063094.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 209 | 392 | 487 | 668 | 4.54e-28 | 116 |
| MS.gene063094.t1 | AT4G38560 | 38.889 | 162 | 98 | 1 | 209 | 369 | 330 | 491 | 3.91e-27 | 113 |
| MS.gene063094.t1 | AT4G38560 | 38.889 | 162 | 98 | 1 | 209 | 369 | 332 | 493 | 4.19e-27 | 113 |
| MS.gene063094.t1 | AT5G11140 | 34.270 | 178 | 113 | 3 | 216 | 392 | 57 | 231 | 5.56e-26 | 105 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 332 | 492 | 3.17e-22 | 99.0 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 334 | 494 | 3.25e-22 | 99.0 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 315 | 475 | 3.84e-22 | 98.6 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 317 | 477 | 3.94e-22 | 98.6 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 350 | 519 | 4.14e-22 | 98.6 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 187 | 356 | 4.86e-22 | 97.1 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 187 | 356 | 4.86e-22 | 97.1 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 286 | 446 | 5.47e-22 | 97.8 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 350 | 519 | 5.63e-22 | 98.2 |
| MS.gene063094.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 210 | 369 | 288 | 448 | 6.07e-22 | 97.8 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 306 | 475 | 1.13e-21 | 97.1 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 306 | 475 | 1.13e-21 | 97.1 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 216 | 385 | 1.19e-21 | 96.3 |
| MS.gene063094.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 201 | 369 | 272 | 441 | 1.30e-21 | 96.7 |
Find 83 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAACGATCTCTGATTTC+AGG | 0.204618 | 3.3:+95785344 | None:intergenic |
| TGATAAGGATTGGATGATTT+AGG | 0.249464 | 3.3:+95786802 | None:intergenic |
| GTTTGGTTCCCTTTGTCTTT+TGG | 0.250491 | 3.3:+95786914 | None:intergenic |
| GCCAGAGAAACTAAAATCTT+TGG | 0.259330 | 3.3:+95785880 | None:intergenic |
| CGGAAGAAGATTGTAATTCT+TGG | 0.286432 | 3.3:+95785627 | None:intergenic |
| CCATCCTTAACTTGATCTTT+AGG | 0.299650 | 3.3:+95786013 | None:intergenic |
| CTTGAGCAGCTCATGTCTTC+AGG | 0.305135 | 3.3:-95785317 | MS.gene063094:CDS |
| CTTGACAAGTATGGTGATAT+AGG | 0.315358 | 3.3:-95785716 | MS.gene063094:CDS |
| GATGCCAATTGCAACAATTC+AGG | 0.316155 | 3.3:-95786772 | MS.gene063094:intron |
| TACAATGTCAAAGAAAGTTT+TGG | 0.326292 | 3.3:-95785758 | MS.gene063094:CDS |
| GTTTCATCAGAATTGGTTAC+TGG | 0.334578 | 3.3:+95785917 | None:intergenic |
| AATAATAGAAAGGTTATTAA+TGG | 0.347675 | 3.3:-95786856 | MS.gene063094:CDS |
| TTCACCAGTTTCATCAGAAT+TGG | 0.348026 | 3.3:+95785910 | None:intergenic |
| GATGAGATCATTCCTTCTTC+TGG | 0.358336 | 3.3:-95786174 | MS.gene063094:CDS |
| TTGACAAGTATGGTGATATA+GGG | 0.359918 | 3.3:-95785715 | MS.gene063094:CDS |
| CTTCTTCCTATGATCAATCT+TGG | 0.363222 | 3.3:+95786272 | None:intergenic |
| ACTTGTCAAGTATTGTTTGT+AGG | 0.367480 | 3.3:+95785729 | None:intergenic |
| ATGTGTAATTGAGCAGAAAT+TGG | 0.373749 | 3.3:+95786150 | None:intergenic |
| CAAACAATACTTGACAAGTA+TGG | 0.386291 | 3.3:-95785725 | MS.gene063094:CDS |
| TCTGAATCCCGTGTTTCAAT+TGG | 0.388960 | 3.3:-95785785 | MS.gene063094:CDS |
| GATCTCTGATTTCAGGAATT+CGG | 0.392697 | 3.3:+95785351 | None:intergenic |
| TATAGGGGCAAGCTGTGATT+TGG | 0.401703 | 3.3:-95785699 | MS.gene063094:CDS |
| GACCAAAGTGAGTGAATTGT+TGG | 0.402832 | 3.3:-95785591 | MS.gene063094:CDS |
| GATTAGTCACCATCAGGATA+TGG | 0.405327 | 3.3:-95785483 | MS.gene063094:CDS |
| TGATCTATCTTTGACTTGAT+AGG | 0.411943 | 3.3:+95785269 | None:intergenic |
| GGAACCTGAATTGTTGCAAT+TGG | 0.412011 | 3.3:+95786768 | None:intergenic |
| GTAACCAATTCTGATGAAAC+TGG | 0.417672 | 3.3:-95785914 | MS.gene063094:CDS |
| TGAATTGTTGGATATTGTTA+AGG | 0.426225 | 3.3:-95785579 | MS.gene063094:CDS |
| ATTACACATCCCAGATGTTA+TGG | 0.434766 | 3.3:-95786136 | MS.gene063094:intron |
| GGTGGAACACTTTGAAGAAC+AGG | 0.435930 | 3.3:+95786228 | None:intergenic |
| AGGGACAGTACCATAACATC+TGG | 0.436687 | 3.3:+95786126 | None:intergenic |
| AGCAGCAACATGATGTGGTT+TGG | 0.440038 | 3.3:+95786897 | None:intergenic |
| GGCTAACTATGATCGTGAAA+TGG | 0.440278 | 3.3:-95785450 | MS.gene063094:CDS |
| TCACCATCAGGATATGGAAA+TGG | 0.446433 | 3.3:-95785477 | MS.gene063094:CDS |
| CATGGAGTGTGTATGCTTTG+TGG | 0.449719 | 3.3:-95785651 | MS.gene063094:CDS |
| TTGGCATCACACTTATGATA+AGG | 0.450367 | 3.3:+95786787 | None:intergenic |
| TAGTATCTATTTCTTTGTTG+TGG | 0.469830 | 3.3:+95785843 | None:intergenic |
| TGAATTGATTAGTCACCATC+AGG | 0.473279 | 3.3:-95785489 | MS.gene063094:CDS |
| ATCCAACAATTCACTCACTT+TGG | 0.473716 | 3.3:+95785589 | None:intergenic |
| TCTTTGTTGTGGAGAGGAAG+GGG | 0.483390 | 3.3:+95785854 | None:intergenic |
| TTTGGTCTTACTTATTGAAT+CGG | 0.484588 | 3.3:+95785607 | None:intergenic |
| GCAGCCTAAAGATCAAGTTA+AGG | 0.486423 | 3.3:-95786017 | MS.gene063094:intron |
| GTCAAGTATTGTTTGTAGGA+TGG | 0.493819 | 3.3:+95785733 | None:intergenic |
| GCTTGAGTGCATTGATGGTA+AGG | 0.495066 | 3.3:+95786943 | None:intergenic |
| TTCTTTGTTGTGGAGAGGAA+GGG | 0.496215 | 3.3:+95785853 | None:intergenic |
| TGTGTAATTGAGCAGAAATT+GGG | 0.497868 | 3.3:+95786151 | None:intergenic |
| CTTTGAAGAACAGGAGGTTG+TGG | 0.499804 | 3.3:+95786237 | None:intergenic |
| TCAGGATATGGAAATGGAAA+AGG | 0.500818 | 3.3:-95785471 | MS.gene063094:CDS |
| TTTCTTTGTTGTGGAGAGGA+AGG | 0.502763 | 3.3:+95785852 | None:intergenic |
| GAAATAGATACTAGTAGCGA+AGG | 0.504275 | 3.3:-95785833 | MS.gene063094:CDS |
| AGAACAGCTAGAATCAGAGT+TGG | 0.506724 | 3.3:-95785417 | MS.gene063094:CDS |
| TTTCCATTTCCATATCCTGA+TGG | 0.507099 | 3.3:+95785474 | None:intergenic |
| TAAAACTGAAACAAAGAAAG+AGG | 0.508090 | 3.3:-95785969 | MS.gene063094:CDS |
| GCAGAAATTGGGCCAGAAGA+AGG | 0.508734 | 3.3:+95786162 | None:intergenic |
| CTCATTCCAAGATTGATCAT+AGG | 0.510237 | 3.3:-95786278 | MS.gene063094:CDS |
| AGCAAGCTTGAGTGCATTGA+TGG | 0.510384 | 3.3:+95786938 | None:intergenic |
| ATCACACTTATGATAAGGAT+TGG | 0.522199 | 3.3:+95786792 | None:intergenic |
| AAACCACATCATGTTGCTGC+TGG | 0.525538 | 3.3:-95786895 | MS.gene063094:CDS |
| CAAGATTGATCATAGGAAGA+AGG | 0.551150 | 3.3:-95786271 | MS.gene063094:CDS |
| CTGCTCATCTTCGTGTAGCA+TGG | 0.552976 | 3.3:-95785547 | MS.gene063094:CDS |
| AAGTAATAGCAATAATAGAA+AGG | 0.561570 | 3.3:-95786866 | MS.gene063094:CDS |
| AGAATCAGAGTTGGAAACAT+TGG | 0.561728 | 3.3:-95785408 | MS.gene063094:CDS |
| AATAGAAAGGTTATTAATGG+AGG | 0.564289 | 3.3:-95786853 | MS.gene063094:CDS |
| TGTAATGAGGTCATATTACA+TGG | 0.570115 | 3.3:-95785669 | MS.gene063094:CDS |
| GCTTGCTCCCAAAAGACAAA+GGG | 0.570196 | 3.3:-95786922 | MS.gene063094:CDS |
| AGCTTGCTCCCAAAAGACAA+AGG | 0.578029 | 3.3:-95786923 | MS.gene063094:CDS |
| CTATGATCAATCTTGGAATG+AGG | 0.584964 | 3.3:+95786279 | None:intergenic |
| ATCAATCTTGGAATGAGGAG+TGG | 0.586936 | 3.3:+95786284 | None:intergenic |
| TCTATTTCTTTGTTGTGGAG+AGG | 0.590301 | 3.3:+95785848 | None:intergenic |
| CTTTGACTTGATAGGTAGCG+TGG | 0.591078 | 3.3:+95785277 | None:intergenic |
| GATTGATCATAGGAAGAAGG+TGG | 0.597603 | 3.3:-95786268 | MS.gene063094:CDS |
| CCTAAAGATCAAGTTAAGGA+TGG | 0.613275 | 3.3:-95786013 | MS.gene063094:CDS |
| ATTTGGAATCAGTTGTAATG+AGG | 0.618166 | 3.3:-95785682 | MS.gene063094:CDS |
| TGACAAGTATGGTGATATAG+GGG | 0.624821 | 3.3:-95785714 | MS.gene063094:CDS |
| ATTGGCTCAGAAAGAACAAG+AGG | 0.625513 | 3.3:-95785390 | MS.gene063094:CDS |
| TAGATGATGTCTAGTAGCAA+CGG | 0.628729 | 3.3:-95786988 | None:intergenic |
| AGTTAAGGATGGTGCTACTG+AGG | 0.634421 | 3.3:-95786002 | MS.gene063094:CDS |
| TCTGATGAAACTGGTGAAGG+TGG | 0.634531 | 3.3:-95785905 | MS.gene063094:CDS |
| GTACCAGCAGCAACATGATG+TGG | 0.635041 | 3.3:+95786892 | None:intergenic |
| GGGACAGTACCATAACATCT+GGG | 0.646171 | 3.3:+95786127 | None:intergenic |
| ATTGATCATAGGAAGAAGGT+GGG | 0.646766 | 3.3:-95786267 | MS.gene063094:CDS |
| GGAACACTTTGAAGAACAGG+AGG | 0.650409 | 3.3:+95786231 | None:intergenic |
| AATTCTGATGAAACTGGTGA+AGG | 0.697682 | 3.3:-95785908 | MS.gene063094:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATATATATATATATA+TGG | + | chr3.3:95786182-95786201 | None:intergenic | 0.0% |
| !! | TTAATTTAAATTATAAGTGT+TGG | + | chr3.3:95785665-95785684 | None:intergenic | 10.0% |
| !!! | TTTTTACAAAAATAAATAGA+GGG | - | chr3.3:95785558-95785577 | MS.gene063094:CDS | 10.0% |
| !!! | TTTTTTACAAAAATAAATAG+AGG | - | chr3.3:95785557-95785576 | MS.gene063094:CDS | 10.0% |
| !! | AATAATAGAAAGGTTATTAA+TGG | - | chr3.3:95785385-95785404 | MS.gene063094:CDS | 15.0% |
| !!! | ATATATGGTTTATTATCTTT+TGG | + | chr3.3:95786167-95786186 | None:intergenic | 15.0% |
| !!! | TTTGGTTTTATATTAACAAA+AGG | + | chr3.3:95786149-95786168 | None:intergenic | 15.0% |
| !! | AAGTAATAGCAATAATAGAA+AGG | - | chr3.3:95785375-95785394 | MS.gene063094:CDS | 20.0% |
| !! | ATAAAATAAGATCAAATTGC+AGG | - | chr3.3:95785932-95785951 | MS.gene063094:CDS | 20.0% |
| !!! | TTCTTTGTTTCAGTTTTATT+GGG | + | chr3.3:95786270-95786289 | None:intergenic | 20.0% |
| !!! | TTTAAATTATAAGTGTTGGT+TGG | + | chr3.3:95785661-95785680 | None:intergenic | 20.0% |
| !!! | TTTCTTTGTTTCAGTTTTAT+TGG | + | chr3.3:95786271-95786290 | None:intergenic | 20.0% |
| !!! | TTTTTGTTATGAGAATAATG+TGG | + | chr3.3:95786046-95786065 | None:intergenic | 20.0% |
| ! | AATAGAAAGGTTATTAATGG+AGG | - | chr3.3:95785388-95785407 | MS.gene063094:CDS | 25.0% |
| ! | AATAGAGGGTTTATGAAAAA+TGG | - | chr3.3:95785572-95785591 | MS.gene063094:CDS | 25.0% |
| ! | AATGAAATGGTCAAACAAAA+TGG | + | chr3.3:95785785-95785804 | None:intergenic | 25.0% |
| ! | ATTAACAAAAGGTTGTGTAA+AGG | + | chr3.3:95786138-95786157 | None:intergenic | 25.0% |
| ! | TAAAACTGAAACAAAGAAAG+AGG | - | chr3.3:95786272-95786291 | MS.gene063094:CDS | 25.0% |
| ! | TATTAGATTGAATACGATAG+TGG | + | chr3.3:95785612-95785631 | None:intergenic | 25.0% |
| ! | TGAATTGTTGGATATTGTTA+AGG | - | chr3.3:95786662-95786681 | MS.gene063094:intron | 25.0% |
| ! | TTAACAAAAGGTTGTGTAAA+GGG | + | chr3.3:95786137-95786156 | None:intergenic | 25.0% |
| !! | TACAATGTCAAAGAAAGTTT+TGG | - | chr3.3:95786483-95786502 | MS.gene063094:intron | 25.0% |
| !! | TAGTATCTATTTCTTTGTTG+TGG | + | chr3.3:95786401-95786420 | None:intergenic | 25.0% |
| !! | TGTATTTTCCAATTGAAACA+CGG | + | chr3.3:95786467-95786486 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTCAGTTTTATTG+GGG | + | chr3.3:95786269-95786288 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTACTTATTGAAT+CGG | + | chr3.3:95786637-95786656 | None:intergenic | 25.0% |
| ACCAATCCATTCTAATGAAA+TGG | + | chr3.3:95785798-95785817 | None:intergenic | 30.0% | |
| ACCATTTCATTAGAATGGAT+TGG | - | chr3.3:95785794-95785813 | MS.gene063094:CDS | 30.0% | |
| ATCACACTTATGATAAGGAT+TGG | + | chr3.3:95785452-95785471 | None:intergenic | 30.0% | |
| ATGTGTAATTGAGCAGAAAT+TGG | + | chr3.3:95786094-95786113 | None:intergenic | 30.0% | |
| CAAACAATACTTGACAAGTA+TGG | - | chr3.3:95786516-95786535 | MS.gene063094:intron | 30.0% | |
| GTTTGACCATTTCATTAGAA+TGG | - | chr3.3:95785789-95785808 | MS.gene063094:CDS | 30.0% | |
| TGATAAGGATTGGATGATTT+AGG | + | chr3.3:95785442-95785461 | None:intergenic | 30.0% | |
| TGTAATGAGGTCATATTACA+TGG | - | chr3.3:95786572-95786591 | MS.gene063094:intron | 30.0% | |
| TGTGTAATTGAGCAGAAATT+GGG | + | chr3.3:95786093-95786112 | None:intergenic | 30.0% | |
| TTGACAAGTATGGTGATATA+GGG | - | chr3.3:95786526-95786545 | MS.gene063094:intron | 30.0% | |
| ! | ACTTGTCAAGTATTGTTTGT+AGG | + | chr3.3:95786515-95786534 | None:intergenic | 30.0% |
| ! | ATTTGGAATCAGTTGTAATG+AGG | - | chr3.3:95786559-95786578 | MS.gene063094:intron | 30.0% |
| ! | GTATTTTCCAATTGAAACAC+GGG | + | chr3.3:95786466-95786485 | None:intergenic | 30.0% |
| !! | TGATCTATCTTTGACTTGAT+AGG | + | chr3.3:95786975-95786994 | None:intergenic | 30.0% |
| !!! | TCCAAAGATTTTAGTTTCTC+TGG | - | chr3.3:95786360-95786379 | MS.gene063094:intron | 30.0% |
| !!! | TGAGAATAATGTGGTTTTGT+TGG | + | chr3.3:95786037-95786056 | None:intergenic | 30.0% |
| AATTCTGATGAAACTGGTGA+AGG | - | chr3.3:95786333-95786352 | MS.gene063094:intron | 35.0% | |
| AGAATCAGAGTTGGAAACAT+TGG | - | chr3.3:95786833-95786852 | MS.gene063094:CDS | 35.0% | |
| ATCCAACAATTCACTCACTT+TGG | + | chr3.3:95786655-95786674 | None:intergenic | 35.0% | |
| ATTACACATCCCAGATGTTA+TGG | - | chr3.3:95786105-95786124 | MS.gene063094:intron | 35.0% | |
| ATTGATCATAGGAAGAAGGT+GGG | - | chr3.3:95785974-95785993 | MS.gene063094:CDS | 35.0% | |
| CAAGATTGATCATAGGAAGA+AGG | - | chr3.3:95785970-95785989 | MS.gene063094:CDS | 35.0% | |
| CCTAAAGATCAAGTTAAGGA+TGG | - | chr3.3:95786228-95786247 | MS.gene063094:CDS | 35.0% | |
| CGGAAGAAGATTGTAATTCT+TGG | + | chr3.3:95786617-95786636 | None:intergenic | 35.0% | |
| CGTTTACATGTGTAGTAAGT+AGG | - | chr3.3:95785746-95785765 | MS.gene063094:CDS | 35.0% | |
| CTATGATCAATCTTGGAATG+AGG | + | chr3.3:95785965-95785984 | None:intergenic | 35.0% | |
| CTCATTCCAAGATTGATCAT+AGG | - | chr3.3:95785963-95785982 | MS.gene063094:CDS | 35.0% | |
| CTTCTTCCTATGATCAATCT+TGG | + | chr3.3:95785972-95785991 | None:intergenic | 35.0% | |
| CTTGACAAGTATGGTGATAT+AGG | - | chr3.3:95786525-95786544 | MS.gene063094:intron | 35.0% | |
| GAAATAGATACTAGTAGCGA+AGG | - | chr3.3:95786408-95786427 | MS.gene063094:intron | 35.0% | |
| GATCTCTGATTTCAGGAATT+CGG | + | chr3.3:95786893-95786912 | None:intergenic | 35.0% | |
| GCCAGAGAAACTAAAATCTT+TGG | + | chr3.3:95786364-95786383 | None:intergenic | 35.0% | |
| GTAACCAATTCTGATGAAAC+TGG | - | chr3.3:95786327-95786346 | MS.gene063094:intron | 35.0% | |
| GTTTCATCAGAATTGGTTAC+TGG | + | chr3.3:95786327-95786346 | None:intergenic | 35.0% | |
| TCAGGATATGGAAATGGAAA+AGG | - | chr3.3:95786770-95786789 | MS.gene063094:intron | 35.0% | |
| TGACAAGTATGGTGATATAG+GGG | - | chr3.3:95786527-95786546 | MS.gene063094:intron | 35.0% | |
| TGCAGGAGATAAAAATGTGT+TGG | + | chr3.3:95785834-95785853 | None:intergenic | 35.0% | |
| TTCACCAGTTTCATCAGAAT+TGG | + | chr3.3:95786334-95786353 | None:intergenic | 35.0% | |
| TTGGCATCACACTTATGATA+AGG | + | chr3.3:95785457-95785476 | None:intergenic | 35.0% | |
| TTTCCATTTCCATATCCTGA+TGG | + | chr3.3:95786770-95786789 | None:intergenic | 35.0% | |
| ! | CCATCCTTAACTTGATCTTT+AGG | + | chr3.3:95786231-95786250 | None:intergenic | 35.0% |
| ! | GTCAAGTATTGTTTGTAGGA+TGG | + | chr3.3:95786511-95786530 | None:intergenic | 35.0% |
| ! | TCTATTTCTTTGTTGTGGAG+AGG | + | chr3.3:95786396-95786415 | None:intergenic | 35.0% |
| ! | TGAATTGATTAGTCACCATC+AGG | - | chr3.3:95786752-95786771 | MS.gene063094:intron | 35.0% |
| !! | TTTGGTTCCCTTTGTCTTTT+GGG | + | chr3.3:95785329-95785348 | None:intergenic | 35.0% |
| !!! | GAATAATGTGGTTTTGTTGG+TGG | + | chr3.3:95786034-95786053 | None:intergenic | 35.0% |
| !!! | TTGTTTCAGTTTTATTGGGG+AGG | + | chr3.3:95786266-95786285 | None:intergenic | 35.0% |
| AGAACAGCTAGAATCAGAGT+TGG | - | chr3.3:95786824-95786843 | MS.gene063094:CDS | 40.0% | |
| ATCAATCTTGGAATGAGGAG+TGG | + | chr3.3:95785960-95785979 | None:intergenic | 40.0% | |
| CTCAAACGATCTCTGATTTC+AGG | + | chr3.3:95786900-95786919 | None:intergenic | 40.0% | |
| GACCAAAGTGAGTGAATTGT+TGG | - | chr3.3:95786650-95786669 | MS.gene063094:intron | 40.0% | |
| GATGAGATCATTCCTTCTTC+TGG | - | chr3.3:95786067-95786086 | MS.gene063094:intron | 40.0% | |
| GATGCCAATTGCAACAATTC+AGG | - | chr3.3:95785469-95785488 | MS.gene063094:CDS | 40.0% | |
| GATTGATCATAGGAAGAAGG+TGG | - | chr3.3:95785973-95785992 | MS.gene063094:CDS | 40.0% | |
| GCAGCCTAAAGATCAAGTTA+AGG | - | chr3.3:95786224-95786243 | MS.gene063094:CDS | 40.0% | |
| GGAACCTGAATTGTTGCAAT+TGG | + | chr3.3:95785476-95785495 | None:intergenic | 40.0% | |
| GGCTAACTATGATCGTGAAA+TGG | - | chr3.3:95786791-95786810 | MS.gene063094:CDS | 40.0% | |
| TCACCATCAGGATATGGAAA+TGG | - | chr3.3:95786764-95786783 | MS.gene063094:intron | 40.0% | |
| TCTGAATCCCGTGTTTCAAT+TGG | - | chr3.3:95786456-95786475 | MS.gene063094:intron | 40.0% | |
| TGTAATGACACAATGAGTGC+AGG | + | chr3.3:95785851-95785870 | None:intergenic | 40.0% | |
| ! | ATTGGCTCAGAAAGAACAAG+AGG | - | chr3.3:95786851-95786870 | MS.gene063094:CDS | 40.0% |
| ! | GATTAGTCACCATCAGGATA+TGG | - | chr3.3:95786758-95786777 | MS.gene063094:intron | 40.0% |
| ! | TTCTTTGTTGTGGAGAGGAA+GGG | + | chr3.3:95786391-95786410 | None:intergenic | 40.0% |
| ! | TTTCTTTGTTGTGGAGAGGA+AGG | + | chr3.3:95786392-95786411 | None:intergenic | 40.0% |
| !! | GTTTGGTTCCCTTTGTCTTT+TGG | + | chr3.3:95785330-95785349 | None:intergenic | 40.0% |
| AAACCACATCATGTTGCTGC+TGG | - | chr3.3:95785346-95785365 | MS.gene063094:CDS | 45.0% | |
| AGCAAGCTTGAGTGCATTGA+TGG | + | chr3.3:95785306-95785325 | None:intergenic | 45.0% | |
| AGCAGCAACATGATGTGGTT+TGG | + | chr3.3:95785347-95785366 | None:intergenic | 45.0% | |
| AGGGACAGTACCATAACATC+TGG | + | chr3.3:95786118-95786137 | None:intergenic | 45.0% | |
| CATGGAGTGTGTATGCTTTG+TGG | - | chr3.3:95786590-95786609 | MS.gene063094:intron | 45.0% | |
| CATGTGTAGTAAGTAGGTGC+AGG | - | chr3.3:95785752-95785771 | MS.gene063094:CDS | 45.0% | |
| GCTTGCTCCCAAAAGACAAA+GGG | - | chr3.3:95785319-95785338 | MS.gene063094:CDS | 45.0% | |
| GGGACAGTACCATAACATCT+GGG | + | chr3.3:95786117-95786136 | None:intergenic | 45.0% | |
| TATAGGGGCAAGCTGTGATT+TGG | - | chr3.3:95786542-95786561 | MS.gene063094:intron | 45.0% | |
| TCTGATGAAACTGGTGAAGG+TGG | - | chr3.3:95786336-95786355 | MS.gene063094:intron | 45.0% | |
| ! | AGCTTGCTCCCAAAAGACAA+AGG | - | chr3.3:95785318-95785337 | MS.gene063094:CDS | 45.0% |
| ! | CTTTGAAGAACAGGAGGTTG+TGG | + | chr3.3:95786007-95786026 | None:intergenic | 45.0% |
| ! | GCTTGAGTGCATTGATGGTA+AGG | + | chr3.3:95785301-95785320 | None:intergenic | 45.0% |
| ! | GGAACACTTTGAAGAACAGG+AGG | + | chr3.3:95786013-95786032 | None:intergenic | 45.0% |
| ! | GGTGGAACACTTTGAAGAAC+AGG | + | chr3.3:95786016-95786035 | None:intergenic | 45.0% |
| ! | TCTTTGTTGTGGAGAGGAAG+GGG | + | chr3.3:95786390-95786409 | None:intergenic | 45.0% |
| !! | AGTTAAGGATGGTGCTACTG+AGG | - | chr3.3:95786239-95786258 | MS.gene063094:CDS | 45.0% |
| !! | CTTTGACTTGATAGGTAGCG+TGG | + | chr3.3:95786967-95786986 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3.3:95785498-95785517 | None:intergenic | 50.0% | |
| AGTAAGTAGGTGCAGGTGCA+TGG | - | chr3.3:95785759-95785778 | MS.gene063094:CDS | 50.0% | |
| CTGCTCATCTTCGTGTAGCA+TGG | - | chr3.3:95786694-95786713 | MS.gene063094:intron | 50.0% | |
| CTTGAGCAGCTCATGTCTTC+AGG | - | chr3.3:95786924-95786943 | MS.gene063094:CDS | 50.0% | |
| GCAGAAATTGGGCCAGAAGA+AGG | + | chr3.3:95786082-95786101 | None:intergenic | 50.0% | |
| GTACCAGCAGCAACATGATG+TGG | + | chr3.3:95785352-95785371 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+AGG | + | chr3.3:95785497-95785516 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95785259 | 95787004 | 95785259 | ID=MS.gene063094 |
| chr3.3 | mRNA | 95785259 | 95787004 | 95785259 | ID=MS.gene063094.t1;Parent=MS.gene063094 |
| chr3.3 | exon | 95786773 | 95787004 | 95786773 | ID=MS.gene063094.t1.exon1;Parent=MS.gene063094.t1 |
| chr3.3 | CDS | 95786773 | 95787004 | 95786773 | ID=cds.MS.gene063094.t1;Parent=MS.gene063094.t1 |
| chr3.3 | exon | 95786137 | 95786309 | 95786137 | ID=MS.gene063094.t1.exon2;Parent=MS.gene063094.t1 |
| chr3.3 | CDS | 95786137 | 95786309 | 95786137 | ID=cds.MS.gene063094.t1;Parent=MS.gene063094.t1 |
| chr3.3 | exon | 95785259 | 95786035 | 95785259 | ID=MS.gene063094.t1.exon3;Parent=MS.gene063094.t1 |
| chr3.3 | CDS | 95785259 | 95786035 | 95785259 | ID=cds.MS.gene063094.t1;Parent=MS.gene063094.t1 |
| Gene Sequence |
| Protein sequence |
