Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74935.t1 | XP_013470327.1 | 92.8 | 430 | 31 | 0 | 1 | 430 | 25 | 454 | 5.40E-201 | 710.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74935.t1 | A0A072VRU0 | 92.8 | 430 | 31 | 0 | 1 | 430 | 1 | 430 | 3.9e-201 | 710.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050379 | MS.gene74935 | 0.816297 | 5.95E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene74935 | 0.833037 | 6.71E-56 | -1.69E-46 |
| MS.gene055151 | MS.gene74935 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene05624 | MS.gene74935 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene74935 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene74935 | 0.803614 | 3.20E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene74935 | 0.815826 | 7.58E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene74935 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene74935 | 0.814866 | 1.24E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene74935 | 0.813814 | 2.12E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene74935 | 0.827172 | 1.81E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74935 | MS.gene68740 | PPI |
| MS.gene68141 | MS.gene74935 | PPI |
| MS.gene029288 | MS.gene74935 | PPI |
| MS.gene065021 | MS.gene74935 | PPI |
| MS.gene063094 | MS.gene74935 | PPI |
| MS.gene014205 | MS.gene74935 | PPI |
| MS.gene037275 | MS.gene74935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74935.t1 | MTR_1g112660 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| MS.gene74935.t1 | MTR_1g112660 | 96.744 | 430 | 14 | 0 | 1 | 430 | 25 | 454 | 0.0 | 850 |
| MS.gene74935.t1 | MTR_1g112660 | 97.581 | 372 | 9 | 0 | 59 | 430 | 1 | 372 | 0.0 | 738 |
| MS.gene74935.t1 | MTR_3g118020 | 46.118 | 425 | 167 | 14 | 12 | 420 | 6 | 384 | 4.01e-85 | 265 |
| MS.gene74935.t1 | MTR_3g118020 | 48.688 | 343 | 122 | 12 | 92 | 420 | 5 | 307 | 3.14e-73 | 232 |
| MS.gene74935.t1 | MTR_8g089530 | 28.708 | 209 | 135 | 4 | 232 | 430 | 217 | 421 | 2.18e-14 | 75.1 |
| MS.gene74935.t1 | MTR_2g006000 | 29.082 | 196 | 122 | 5 | 248 | 430 | 233 | 424 | 6.95e-13 | 70.5 |
| MS.gene74935.t1 | MTR_8g089440 | 27.485 | 171 | 107 | 4 | 176 | 332 | 226 | 393 | 4.00e-12 | 68.2 |
| MS.gene74935.t1 | MTR_8g089480 | 27.485 | 171 | 107 | 4 | 176 | 332 | 167 | 334 | 5.90e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74935.t1 | AT2G16900 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.38e-39 | 146 |
| MS.gene74935.t1 | AT2G16900 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.38e-39 | 146 |
| MS.gene74935.t1 | AT2G16900 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.38e-39 | 146 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.69e-39 | 144 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.69e-39 | 144 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.69e-39 | 144 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.69e-39 | 144 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 216 | 398 | 1.11e-38 | 144 |
| MS.gene74935.t1 | AT4G35110 | 39.896 | 193 | 106 | 2 | 238 | 430 | 219 | 401 | 1.23e-38 | 144 |
| MS.gene74935.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.64e-35 | 133 |
| MS.gene74935.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.64e-35 | 133 |
| MS.gene74935.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.64e-35 | 133 |
| MS.gene74935.t1 | AT2G16900 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.64e-35 | 133 |
| MS.gene74935.t1 | AT4G38550 | 34.896 | 192 | 125 | 0 | 235 | 426 | 317 | 508 | 2.37e-34 | 134 |
| MS.gene74935.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 3.39e-34 | 135 |
| MS.gene74935.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 3.39e-34 | 135 |
| MS.gene74935.t1 | AT4G38550 | 35.149 | 202 | 130 | 1 | 228 | 429 | 449 | 649 | 3.99e-34 | 135 |
| MS.gene74935.t1 | AT4G38550 | 34.872 | 195 | 127 | 0 | 235 | 429 | 359 | 553 | 4.02e-34 | 134 |
| MS.gene74935.t1 | AT5G11140 | 36.216 | 185 | 118 | 0 | 246 | 430 | 57 | 241 | 1.17e-33 | 126 |
| MS.gene74935.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 323 | 521 | 8.69e-32 | 127 |
| MS.gene74935.t1 | AT4G38560 | 36.181 | 199 | 125 | 1 | 234 | 430 | 325 | 523 | 9.57e-32 | 127 |
| MS.gene74935.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 486 | 678 | 1.41e-31 | 127 |
| MS.gene74935.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 521 | 713 | 1.66e-31 | 127 |
| MS.gene74935.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 2.01e-31 | 127 |
| MS.gene74935.t1 | AT2G20960 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 2.01e-31 | 127 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.47e-28 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.47e-28 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 225 | 411 | 1.68e-27 | 113 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 1.68e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 334 | 520 | 1.72e-27 | 115 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 317 | 503 | 1.79e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 332 | 518 | 1.86e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.33e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 286 | 472 | 2.40e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 288 | 474 | 2.51e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.89e-27 | 114 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 281 | 467 | 3.43e-27 | 113 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.05e-27 | 113 |
| MS.gene74935.t1 | AT2G20950 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.05e-27 | 113 |
Find 73 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCAAGGTTGATAATT+TGG | 0.133061 | 1.3:-76438591 | MS.gene74935:CDS |
| AAGATAAATGGCGCCAATTT+TGG | 0.217899 | 1.3:+76439694 | None:intergenic |
| CAAGCCACCTAAGAATAAAA+AGG | 0.248587 | 1.3:-76441076 | MS.gene74935:CDS |
| CTGCTTGATTTGTCTGTATC+TGG | 0.275302 | 1.3:+76439290 | None:intergenic |
| AGAATGTCTGGAGCTGATTC+AGG | 0.287049 | 1.3:-76440275 | MS.gene74935:intron |
| TGAGATGAAGTCATCTGATT+TGG | 0.311588 | 1.3:-76438633 | MS.gene74935:CDS |
| CAATCTATCTTTGACAAGTA+TGG | 0.315042 | 1.3:-76439046 | MS.gene74935:CDS |
| GTTGCAATCAACCTCAATAA+TGG | 0.352010 | 1.3:-76438942 | MS.gene74935:CDS |
| ATGTCATCAAAACAGGTTAC+TGG | 0.372121 | 1.3:+76439238 | None:intergenic |
| AGTTTCTGAGACGCGTGTTC+CGG | 0.372391 | 1.3:-76439110 | MS.gene74935:CDS |
| TTTGGATAGCAGATCATTGC+TGG | 0.373557 | 1.3:-76438573 | MS.gene74935:CDS |
| AGCCAACAATTCCTTAACTT+TGG | 0.375480 | 1.3:+76438907 | None:intergenic |
| TGGTAAGGATTAGATGCTTT+AGG | 0.387405 | 1.3:+76440323 | None:intergenic |
| AGTGTTCCAGCCTCCAAAAT+TGG | 0.390259 | 1.3:-76439707 | MS.gene74935:CDS |
| TTGAGGTTGATTGCAACTCT+TGG | 0.403873 | 1.3:+76438948 | None:intergenic |
| CTGTCAAGAACTGGGAGTTC+AGG | 0.405904 | 1.3:+76439728 | None:intergenic |
| TTCTCCAATGTCATCAAAAC+AGG | 0.411746 | 1.3:+76439231 | None:intergenic |
| GCTGGAACACTGTCAAGAAC+TGG | 0.413594 | 1.3:+76439719 | None:intergenic |
| GTCCAAAGTTAAGGAATTGT+TGG | 0.414758 | 1.3:-76438909 | MS.gene74935:CDS |
| ACACAGTTTGGCATAACTCT+TGG | 0.416359 | 1.3:+76441165 | None:intergenic |
| GGTTGGACTTTGTCATTGAC+AGG | 0.416998 | 1.3:+76439340 | None:intergenic |
| CCTTCGCTGCCTCCACGGAC+TGG | 0.417167 | 1.3:+76438789 | None:intergenic |
| TTTGACAAGTATGGCGATAT+AGG | 0.417915 | 1.3:-76439037 | MS.gene74935:CDS |
| CTTTGTTAATTCCATTATTG+AGG | 0.418558 | 1.3:+76438931 | None:intergenic |
| ATTAACAAAGTCCAAAGTTA+AGG | 0.424679 | 1.3:-76438918 | MS.gene74935:CDS |
| AGATTCTCAGAACCATCCTT+TGG | 0.426249 | 1.3:+76439319 | None:intergenic |
| TGCCGCATCAGCAAGATAAA+TGG | 0.426980 | 1.3:+76439682 | None:intergenic |
| TTAGAAGCATATACACAGTT+TGG | 0.434446 | 1.3:+76441153 | None:intergenic |
| GATGGTTCTGAGAATCTTGC+CGG | 0.438726 | 1.3:-76439313 | MS.gene74935:CDS |
| TATAGGAGAAAGCTGCCATT+TGG | 0.447354 | 1.3:-76439020 | MS.gene74935:CDS |
| AATTGCCAGAAAAGAATGTC+TGG | 0.451422 | 1.3:-76440287 | MS.gene74935:CDS |
| GGCTGACTCTGATAGTGAAA+TGG | 0.452176 | 1.3:-76438768 | MS.gene74935:CDS |
| TTCACATGATATCTTCCAAC+CGG | 0.462469 | 1.3:+76439091 | None:intergenic |
| ACTTGTCAAAGATAGATTGC+AGG | 0.471370 | 1.3:+76439050 | None:intergenic |
| GCTATCCAAATTATCAACCT+TGG | 0.473319 | 1.3:+76438586 | None:intergenic |
| AATTGAATTCCTTGATCTTG+TGG | 0.477003 | 1.3:+76441100 | None:intergenic |
| AGAAAGCTGCCATTTGGAAT+CGG | 0.478703 | 1.3:-76439014 | MS.gene74935:CDS |
| GAGGACAGTGATGATGAAGA+GGG | 0.480600 | 1.3:-76439145 | MS.gene74935:CDS |
| CGCCATTTATCTTGCTGATG+CGG | 0.483504 | 1.3:-76439684 | MS.gene74935:CDS |
| TCATTCCATTAACCTTTGAC+AGG | 0.484823 | 1.3:-76439772 | MS.gene74935:CDS |
| ATCAGAATAACAAAAGTGCT+TGG | 0.488484 | 1.3:+76439183 | None:intergenic |
| TCTCAGAACCATCCTTTGGT+TGG | 0.489848 | 1.3:+76439323 | None:intergenic |
| GTCAGCCTTCGCTGCCTCCA+CGG | 0.492054 | 1.3:+76438784 | None:intergenic |
| CCAGTCCGTGGAGGCAGCGA+AGG | 0.500128 | 1.3:-76438789 | MS.gene74935:CDS |
| AATGAGATAGTACCAGCTTC+TGG | 0.501090 | 1.3:-76439611 | MS.gene74935:CDS |
| GGTGTTATAGAAAGTGAGAT+AGG | 0.519458 | 1.3:-76440386 | MS.gene74935:CDS |
| CTGCTCAACTTCGCGTGACG+TGG | 0.519956 | 1.3:-76438865 | MS.gene74935:CDS |
| TTTACATCACACGCATGGTA+AGG | 0.525868 | 1.3:+76440308 | None:intergenic |
| GCATCACAACCGATTCCAAA+TGG | 0.527475 | 1.3:+76439005 | None:intergenic |
| GAAGGTCTAACTACATCAGC+TGG | 0.534751 | 1.3:-76439211 | MS.gene74935:CDS |
| TCAAAGATAGATTGCAGGAT+GGG | 0.535446 | 1.3:+76439055 | None:intergenic |
| TGAGGACAGTGATGATGAAG+AGG | 0.538033 | 1.3:-76439146 | MS.gene74935:CDS |
| TGATGTTCTCCGTGATAATG+AGG | 0.548223 | 1.3:-76439164 | MS.gene74935:CDS |
| AAATTGCATCCACAAGATCA+AGG | 0.554464 | 1.3:-76441109 | MS.gene74935:CDS |
| TTGATTTGTCTGTATCTGGC+CGG | 0.560826 | 1.3:+76439294 | None:intergenic |
| CTGGAACACTGTCAAGAACT+GGG | 0.575472 | 1.3:+76439720 | None:intergenic |
| GTATGTAGTTCACCAGAAGC+TGG | 0.576929 | 1.3:+76439599 | None:intergenic |
| CAGGCTATCTATCAAATCCA+AGG | 0.583999 | 1.3:-76438603 | MS.gene74935:CDS |
| TCTGAGACGCGTGTTCCGGT+TGG | 0.592815 | 1.3:-76439106 | MS.gene74935:CDS |
| GACAAAGTCCAACCAAAGGA+TGG | 0.593512 | 1.3:-76439331 | MS.gene74935:CDS |
| CAGATACAGACAAATCAAGC+AGG | 0.602638 | 1.3:-76439289 | MS.gene74935:CDS |
| GTCAAAGATAGATTGCAGGA+TGG | 0.607166 | 1.3:+76439054 | None:intergenic |
| GGCAATTTACATCACACGCA+TGG | 0.610083 | 1.3:+76440303 | None:intergenic |
| CATTGATGAGCACCAGTCCG+TGG | 0.628033 | 1.3:-76438801 | MS.gene74935:CDS |
| CATCACTGTCCTCATTATCA+CGG | 0.628549 | 1.3:+76439155 | None:intergenic |
| ACTACATACTCTAGATGTCA+AGG | 0.630737 | 1.3:-76439585 | MS.gene74935:intron |
| ATTTGGAATCGGTTGTGATG+CGG | 0.643613 | 1.3:-76439003 | MS.gene74935:CDS |
| GGTCTAACTACATCAGCTGG+TGG | 0.651697 | 1.3:-76439208 | MS.gene74935:CDS |
| GGTTGGAAGATATCATGTGA+AGG | 0.654478 | 1.3:-76439089 | MS.gene74935:CDS |
| TTTGACTCAGAAAGAACGGG+AGG | 0.654627 | 1.3:-76438708 | MS.gene74935:CDS |
| CAATGACAAAGTCCAACCAA+AGG | 0.663967 | 1.3:-76439335 | MS.gene74935:CDS |
| ACTTCATCTCAAGCTCGCTG+AGG | 0.681126 | 1.3:+76438645 | None:intergenic |
| TGATGAGCACCAGTCCGTGG+AGG | 0.694249 | 1.3:-76438798 | MS.gene74935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATATTTAACAAAGA+TGG | - | chr1.3:76440288-76440307 | MS.gene74935:CDS | 10.0% |
| !! | ATATTAAAACAAAAATTGAA+GGG | - | chr1.3:76441060-76441079 | MS.gene74935:intron | 10.0% |
| !! | AGAGATTAAAAATTTATGAT+AGG | + | chr1.3:76439026-76439045 | None:intergenic | 15.0% |
| !! | GATATTAAAACAAAAATTGA+AGG | - | chr1.3:76441059-76441078 | MS.gene74935:intron | 15.0% |
| !! | TAATATAGTTTAGTTATGTA+TGG | - | chr1.3:76438972-76438991 | MS.gene74935:CDS | 15.0% |
| !!! | TTGTCATAATATTTTGATAT+TGG | + | chr1.3:76440086-76440105 | None:intergenic | 15.0% |
| !! | AAAAGAACTAGAATCAAAAA+TGG | - | chr1.3:76441004-76441023 | MS.gene74935:intron | 20.0% |
| !! | AAATTGCAGATAAAAAATGA+AGG | + | chr1.3:76439494-76439513 | None:intergenic | 20.0% |
| !! | AATTGCAGATAAAAAATGAA+GGG | + | chr1.3:76439493-76439512 | None:intergenic | 20.0% |
| !! | AGAACTAATAATTTATCCTT+TGG | - | chr1.3:76439243-76439262 | MS.gene74935:CDS | 20.0% |
| !! | ATATTATGACAAGAAAAAGT+TGG | - | chr1.3:76440094-76440113 | MS.gene74935:intron | 20.0% |
| !! | GATAAACACTTATACTAAAA+GGG | - | chr1.3:76438919-76438938 | MS.gene74935:CDS | 20.0% |
| !! | TGATAAACACTTATACTAAA+AGG | - | chr1.3:76438918-76438937 | MS.gene74935:CDS | 20.0% |
| !! | TTTGTCAACTTACAAATATT+TGG | - | chr1.3:76439863-76439882 | MS.gene74935:intron | 20.0% |
| !!! | ATACTCTTTTTAATATACCT+TGG | - | chr1.3:76438717-76438736 | MS.gene74935:CDS | 20.0% |
| !!! | CATTTTTTATCTGCAATTTA+TGG | - | chr1.3:76439495-76439514 | MS.gene74935:intron | 20.0% |
| !!! | TATTTTCATATAAGCTATCA+TGG | + | chr1.3:76438843-76438862 | None:intergenic | 20.0% |
| ! | AATAACTAAGTGTTCATTCA+TGG | - | chr1.3:76439907-76439926 | MS.gene74935:intron | 25.0% |
| ! | ACTAAACTATATTACCTGTT+TGG | + | chr1.3:76438966-76438985 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTCCAAAGTTA+AGG | - | chr1.3:76440821-76440840 | MS.gene74935:intron | 25.0% |
| ! | CTACAATCTTCTTAAATTGT+AGG | - | chr1.3:76439942-76439961 | MS.gene74935:intron | 25.0% |
| ! | CTATTGATATTAGCACATAT+GGG | - | chr1.3:76438769-76438788 | MS.gene74935:CDS | 25.0% |
| ! | CTTTGTTAATTCCATTATTG+AGG | + | chr1.3:76440811-76440830 | None:intergenic | 25.0% |
| ! | GCAATTATTTCATATCAGTT+AGG | + | chr1.3:76439269-76439288 | None:intergenic | 25.0% |
| ! | TATAATCGATACAACTATAG+AGG | + | chr1.3:76439114-76439133 | None:intergenic | 25.0% |
| ! | TCTATTGATATTAGCACATA+TGG | - | chr1.3:76438768-76438787 | MS.gene74935:CDS | 25.0% |
| ! | TTAACTATATGCTATTGAGA+AGG | + | chr1.3:76440350-76440369 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTGGAAAACAAAA+AGG | + | chr1.3:76439327-76439346 | None:intergenic | 25.0% |
| !!! | AAATTTTGACTCAGAAAGAA+CGG | - | chr1.3:76441027-76441046 | MS.gene74935:intron | 25.0% |
| !!! | AGTTTTTTCTTTATCCAAAC+AGG | - | chr1.3:76438949-76438968 | MS.gene74935:CDS | 25.0% |
| !!! | CTAATAGAATTTTCTGAAGA+GGG | + | chr1.3:76440205-76440224 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAGGCATAAAAAC+AGG | + | chr1.3:76439088-76439107 | None:intergenic | 25.0% |
| !!! | TCTAATAGAATTTTCTGAAG+AGG | + | chr1.3:76440206-76440225 | None:intergenic | 25.0% |
| AAGCCACCTAAGAATAAAAA+GGG | - | chr1.3:76438664-76438683 | MS.gene74935:CDS | 30.0% | |
| AATTGAATTCCTTGATCTTG+TGG | + | chr1.3:76438642-76438661 | None:intergenic | 30.0% | |
| ACACCACTTTCATCTTAATT+AGG | + | chr1.3:76439632-76439651 | None:intergenic | 30.0% | |
| AGTCTAGAAACAGATTGATT+TGG | - | chr1.3:76439670-76439689 | MS.gene74935:CDS | 30.0% | |
| AGTTAACACGACACATAAAT+TGG | + | chr1.3:76439603-76439622 | None:intergenic | 30.0% | |
| ATGTGAAAATGAAGACAACA+AGG | + | chr1.3:76440254-76440273 | None:intergenic | 30.0% | |
| CAATCTATCTTTGACAAGTA+TGG | - | chr1.3:76440693-76440712 | MS.gene74935:intron | 30.0% | |
| TATATACCAGATAACTAACC+TGG | + | chr1.3:76440322-76440341 | None:intergenic | 30.0% | |
| TATTGCCATATTCTTAGCTA+TGG | + | chr1.3:76439891-76439910 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAG+AGG | + | chr1.3:76438743-76438762 | None:intergenic | 30.0% | |
| TCTCCTAATTAAGATGAAAG+TGG | - | chr1.3:76439626-76439645 | MS.gene74935:CDS | 30.0% | |
| TGCAGTTACAAATGAGTATT+TGG | - | chr1.3:76439052-76439071 | MS.gene74935:CDS | 30.0% | |
| TTTGACAGGAAAAAAAAGCT+AGG | - | chr1.3:76439981-76440000 | MS.gene74935:intron | 30.0% | |
| ! | AAAAAGAGTATACATCAAGC+AGG | + | chr1.3:76438708-76438727 | None:intergenic | 30.0% |
| ! | TTAGAAGCATATACACAGTT+TGG | + | chr1.3:76438589-76438608 | None:intergenic | 30.0% |
| ! | TTGTTGTCTTCATTTTCACA+TGG | - | chr1.3:76440253-76440272 | MS.gene74935:intron | 30.0% |
| ! | TTTTTCCTGTCAAAGGTTAA+TGG | + | chr1.3:76439975-76439994 | None:intergenic | 30.0% |
| !! | ATCAGAATAACAAAAGTGCT+TGG | + | chr1.3:76440559-76440578 | None:intergenic | 30.0% |
| !! | CAAATCCAAGGTTGATAATT+TGG | - | chr1.3:76441148-76441167 | MS.gene74935:CDS | 30.0% |
| !!! | AATTTTGACTCAGAAAGAAC+GGG | - | chr1.3:76441028-76441047 | MS.gene74935:intron | 30.0% |
| !!! | CTATAGAGGTGACTTTTTTT+AGG | + | chr1.3:76439100-76439119 | None:intergenic | 30.0% |
| !!! | TAGCTTTTTTTTCCTGTCAA+AGG | + | chr1.3:76439982-76440001 | None:intergenic | 30.0% |
| AAATTGCATCCACAAGATCA+AGG | - | chr1.3:76438630-76438649 | MS.gene74935:CDS | 35.0% | |
| AATTGCCAGAAAAGAATGTC+TGG | - | chr1.3:76439452-76439471 | MS.gene74935:intron | 35.0% | |
| ACTACATACTCTAGATGTCA+AGG | - | chr1.3:76440154-76440173 | MS.gene74935:intron | 35.0% | |
| ACTTGTCAAAGATAGATTGC+AGG | + | chr1.3:76440692-76440711 | None:intergenic | 35.0% | |
| AGCCAACAATTCCTTAACTT+TGG | + | chr1.3:76440835-76440854 | None:intergenic | 35.0% | |
| ATGTCATCAAAACAGGTTAC+TGG | + | chr1.3:76440504-76440523 | None:intergenic | 35.0% | |
| CAAGCCACCTAAGAATAAAA+AGG | - | chr1.3:76438663-76438682 | MS.gene74935:CDS | 35.0% | |
| CACTAGTATGAACTCATTGA+TGG | + | chr1.3:76439837-76439856 | None:intergenic | 35.0% | |
| CCTAAGAATAAAAAGGGATC+TGG | - | chr1.3:76438670-76438689 | MS.gene74935:CDS | 35.0% | |
| GAGTTGAGTGATTTATAGCT+AGG | + | chr1.3:76439291-76439310 | None:intergenic | 35.0% | |
| GCTATCCAAATTATCAACCT+TGG | + | chr1.3:76441156-76441175 | None:intergenic | 35.0% | |
| GTCCAAAGTTAAGGAATTGT+TGG | - | chr1.3:76440830-76440849 | MS.gene74935:intron | 35.0% | |
| GTTGCAATCAACCTCAATAA+TGG | - | chr1.3:76440797-76440816 | MS.gene74935:intron | 35.0% | |
| TCAAAGATAGATTGCAGGAT+GGG | + | chr1.3:76440687-76440706 | None:intergenic | 35.0% | |
| TCATTCCATTAACCTTTGAC+AGG | - | chr1.3:76439967-76439986 | MS.gene74935:intron | 35.0% | |
| TGAGATGAAGTCATCTGATT+TGG | - | chr1.3:76441106-76441125 | MS.gene74935:CDS | 35.0% | |
| TGGTAAGGATTAGATGCTTT+AGG | + | chr1.3:76439419-76439438 | None:intergenic | 35.0% | |
| TTCACATGATATCTTCCAAC+CGG | + | chr1.3:76440651-76440670 | None:intergenic | 35.0% | |
| TTCTCCAATGTCATCAAAAC+AGG | + | chr1.3:76440511-76440530 | None:intergenic | 35.0% | |
| TTTCATATCAGTTAGGCCAA+AGG | + | chr1.3:76439262-76439281 | None:intergenic | 35.0% | |
| TTTGACAAGTATGGCGATAT+AGG | - | chr1.3:76440702-76440721 | MS.gene74935:intron | 35.0% | |
| ! | AAGATAAATGGCGCCAATTT+TGG | + | chr1.3:76440048-76440067 | None:intergenic | 35.0% |
| ! | AGTCAAAACAGAAGCATACA+TGG | + | chr1.3:76439187-76439206 | None:intergenic | 35.0% |
| ! | CCAGATCCCTTTTTATTCTT+AGG | + | chr1.3:76438673-76438692 | None:intergenic | 35.0% |
| ! | CTTTTTATTCTTAGGTGGCT+TGG | + | chr1.3:76438665-76438684 | None:intergenic | 35.0% |
| ! | GATCCCTTTTTATTCTTAGG+TGG | + | chr1.3:76438670-76438689 | None:intergenic | 35.0% |
| ! | GGTGTTATAGAAAGTGAGAT+AGG | - | chr1.3:76439353-76439372 | MS.gene74935:intron | 35.0% |
| ! | TTTTCCAAAGCTTTTCGCAA+AGG | - | chr1.3:76439332-76439351 | MS.gene74935:CDS | 35.0% |
| !! | ATTTTGAGTGCATTCATGGT+AGG | + | chr1.3:76438614-76438633 | None:intergenic | 35.0% |
| !! | CATCTGATTTGGAGAAAAAC+AGG | - | chr1.3:76441117-76441136 | MS.gene74935:CDS | 35.0% |
| !! | CTAGAAACAGATTGATTTGG+AGG | - | chr1.3:76439673-76439692 | MS.gene74935:CDS | 35.0% |
| !! | GGTACTATCTCATTGCTTTT+CGG | + | chr1.3:76440122-76440141 | None:intergenic | 35.0% |
| !! | TGCAATTTTGAGTGCATTCA+TGG | + | chr1.3:76438618-76438637 | None:intergenic | 35.0% |
| !! | TTTTGAGTGCATTCATGGTA+GGG | + | chr1.3:76438613-76438632 | None:intergenic | 35.0% |
| !!! | GTAACCTGTTTTGATGACAT+TGG | - | chr1.3:76440504-76440523 | MS.gene74935:intron | 35.0% |
| !!! | TGTTTTGATGACATTGGAGA+AGG | - | chr1.3:76440510-76440529 | MS.gene74935:intron | 35.0% |
| AAACACCATTTCTGCACTGT+TGG | - | chr1.3:76438999-76439018 | MS.gene74935:CDS | 40.0% | |
| AACACCTTTGCGAAAAGCTT+TGG | + | chr1.3:76439339-76439358 | None:intergenic | 40.0% | |
| AATGAGATAGTACCAGCTTC+TGG | - | chr1.3:76440128-76440147 | MS.gene74935:intron | 40.0% | |
| ACACAGTTTGGCATAACTCT+TGG | + | chr1.3:76438577-76438596 | None:intergenic | 40.0% | |
| AGATTCTCAGAACCATCCTT+TGG | + | chr1.3:76440423-76440442 | None:intergenic | 40.0% | |
| ATACCTTGGCCTCTTTGAAT+TGG | - | chr1.3:76438731-76438750 | MS.gene74935:CDS | 40.0% | |
| CAATGACAAAGTCCAACCAA+AGG | - | chr1.3:76440404-76440423 | MS.gene74935:intron | 40.0% | |
| CAGATACAGACAAATCAAGC+AGG | - | chr1.3:76440450-76440469 | MS.gene74935:intron | 40.0% | |
| CAGGCTATCTATCAAATCCA+AGG | - | chr1.3:76441136-76441155 | MS.gene74935:CDS | 40.0% | |
| CATCACTGTCCTCATTATCA+CGG | + | chr1.3:76440587-76440606 | None:intergenic | 40.0% | |
| GAAGAAAAACACATGCACTC+AGG | - | chr1.3:76439389-76439408 | MS.gene74935:intron | 40.0% | |
| GGTTGGAAGATATCATGTGA+AGG | - | chr1.3:76440650-76440669 | MS.gene74935:intron | 40.0% | |
| GTCAAAGATAGATTGCAGGA+TGG | + | chr1.3:76440688-76440707 | None:intergenic | 40.0% | |
| GTCTCTTGCCATTGTATCTA+TGG | - | chr1.3:76440373-76440392 | MS.gene74935:CDS | 40.0% | |
| TATAGGAGAAAGCTGCCATT+TGG | - | chr1.3:76440719-76440738 | MS.gene74935:intron | 40.0% | |
| TGGAGCCATAGCTAAGAATA+TGG | - | chr1.3:76439883-76439902 | MS.gene74935:intron | 40.0% | |
| TGGAGGCTGAAAATAAACTG+TGG | - | chr1.3:76439690-76439709 | MS.gene74935:CDS | 40.0% | |
| TTTACATCACACGCATGGTA+AGG | + | chr1.3:76439434-76439453 | None:intergenic | 40.0% | |
| TTTGGATAGCAGATCATTGC+TGG | - | chr1.3:76441166-76441185 | MS.gene74935:CDS | 40.0% | |
| ! | ACAGAAGCATACATGGAGAA+AGG | + | chr1.3:76439180-76439199 | None:intergenic | 40.0% |
| ! | AGAAAGCTGCCATTTGGAAT+CGG | - | chr1.3:76440725-76440744 | MS.gene74935:intron | 40.0% |
| ! | ATAAATGGCGCCAATTTTGG+AGG | + | chr1.3:76440045-76440064 | None:intergenic | 40.0% |
| ! | ATTTGGAATCGGTTGTGATG+CGG | - | chr1.3:76440736-76440755 | MS.gene74935:intron | 40.0% |
| ! | TGATGTTCTCCGTGATAATG+AGG | - | chr1.3:76440575-76440594 | MS.gene74935:intron | 40.0% |
| ! | TTGAGGTTGATTGCAACTCT+TGG | + | chr1.3:76440794-76440813 | None:intergenic | 40.0% |
| !! | CTGCTTGATTTGTCTGTATC+TGG | + | chr1.3:76440452-76440471 | None:intergenic | 40.0% |
| !! | TTGATTTGTCTGTATCTGGC+CGG | + | chr1.3:76440448-76440467 | None:intergenic | 40.0% |
| AAGCCAATTCAAAGAGGCCA+AGG | + | chr1.3:76438737-76438756 | None:intergenic | 45.0% | |
| ACAGGCTGCCATAGATACAA+TGG | + | chr1.3:76440384-76440403 | None:intergenic | 45.0% | |
| AGTGTTCCAGCCTCCAAAAT+TGG | - | chr1.3:76440032-76440051 | MS.gene74935:intron | 45.0% | |
| CGCCATTTATCTTGCTGATG+CGG | - | chr1.3:76440055-76440074 | MS.gene74935:intron | 45.0% | |
| CTGGAACACTGTCAAGAACT+GGG | + | chr1.3:76440022-76440041 | None:intergenic | 45.0% | |
| GAAGGTCTAACTACATCAGC+TGG | - | chr1.3:76440528-76440547 | MS.gene74935:intron | 45.0% | |
| GACAAAGTCCAACCAAAGGA+TGG | - | chr1.3:76440408-76440427 | MS.gene74935:intron | 45.0% | |
| GGCAATTTACATCACACGCA+TGG | + | chr1.3:76439439-76439458 | None:intergenic | 45.0% | |
| GGTTGGACTTTGTCATTGAC+AGG | + | chr1.3:76440402-76440421 | None:intergenic | 45.0% | |
| GTATGTAGTTCACCAGAAGC+TGG | + | chr1.3:76440143-76440162 | None:intergenic | 45.0% | |
| TAGGACCAACAGTGCAGAAA+TGG | + | chr1.3:76439007-76439026 | None:intergenic | 45.0% | |
| TCTCAGAACCATCCTTTGGT+TGG | + | chr1.3:76440419-76440438 | None:intergenic | 45.0% | |
| TGCCGCATCAGCAAGATAAA+TGG | + | chr1.3:76440060-76440079 | None:intergenic | 45.0% | |
| TTTGACTCAGAAAGAACGGG+AGG | - | chr1.3:76441031-76441050 | MS.gene74935:intron | 45.0% | |
| ! | AAGAGGGTGTGAGAAAAGAG+GGG | + | chr1.3:76440189-76440208 | None:intergenic | 45.0% |
| ! | AGAATGTCTGGAGCTGATTC+AGG | - | chr1.3:76439464-76439483 | MS.gene74935:intron | 45.0% |
| ! | CAGCTCCAGACATTCTTTTC+TGG | + | chr1.3:76439460-76439479 | None:intergenic | 45.0% |
| ! | GAAGAGGGTGTGAGAAAAGA+GGG | + | chr1.3:76440190-76440209 | None:intergenic | 45.0% |
| ! | GAGGACAGTGATGATGAAGA+GGG | - | chr1.3:76440594-76440613 | MS.gene74935:intron | 45.0% |
| ! | GCATCACAACCGATTCCAAA+TGG | + | chr1.3:76440737-76440756 | None:intergenic | 45.0% |
| ! | GGCTGACTCTGATAGTGAAA+TGG | - | chr1.3:76440971-76440990 | MS.gene74935:intron | 45.0% |
| ! | TCAGAGCCAGGTTAGTTATC+TGG | - | chr1.3:76440313-76440332 | MS.gene74935:CDS | 45.0% |
| ! | TGAAGAGGGTGTGAGAAAAG+AGG | + | chr1.3:76440191-76440210 | None:intergenic | 45.0% |
| ! | TGAGGACAGTGATGATGAAG+AGG | - | chr1.3:76440593-76440612 | MS.gene74935:intron | 45.0% |
| !! | GATGGTTCTGAGAATCTTGC+CGG | - | chr1.3:76440426-76440445 | MS.gene74935:intron | 45.0% |
| !! | TCATATATATATATATATAT+AGG | - | chr1.3:76439210-76439229 | MS.gene74935:CDS | 5.0% |
| ACTTCATCTCAAGCTCGCTG+AGG | + | chr1.3:76441097-76441116 | None:intergenic | 50.0% | |
| CTGTCAAGAACTGGGAGTTC+AGG | + | chr1.3:76440014-76440033 | None:intergenic | 50.0% | |
| GCTGGAACACTGTCAAGAAC+TGG | + | chr1.3:76440023-76440042 | None:intergenic | 50.0% | |
| GGTCTAACTACATCAGCTGG+TGG | - | chr1.3:76440531-76440550 | MS.gene74935:intron | 50.0% | |
| ! | ACAAAGATGGTGTCAGAGCC+AGG | - | chr1.3:76440301-76440320 | MS.gene74935:CDS | 50.0% |
| !! | AGTTTCTGAGACGCGTGTTC+CGG | - | chr1.3:76440629-76440648 | MS.gene74935:intron | 50.0% |
| CATTGATGAGCACCAGTCCG+TGG | - | chr1.3:76440938-76440957 | MS.gene74935:intron | 55.0% | |
| !! | ATGGCGCCAATTTTGGAGGC+TGG | + | chr1.3:76440041-76440060 | None:intergenic | 55.0% |
| CTGCTCAACTTCGCGTGACG+TGG | - | chr1.3:76440874-76440893 | MS.gene74935:intron | 60.0% | |
| TGATGAGCACCAGTCCGTGG+AGG | - | chr1.3:76440941-76440960 | MS.gene74935:intron | 60.0% | |
| ! | TCTGAGACGCGTGTTCCGGT+TGG | - | chr1.3:76440633-76440652 | MS.gene74935:intron | 60.0% |
| GTCAGCCTTCGCTGCCTCCA+CGG | + | chr1.3:76440958-76440977 | None:intergenic | 65.0% | |
| CCAGTCCGTGGAGGCAGCGA+AGG | - | chr1.3:76440950-76440969 | MS.gene74935:intron | 70.0% | |
| CCTTCGCTGCCTCCACGGAC+TGG | + | chr1.3:76440953-76440972 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76438559 | 76441202 | 76438559 | ID=MS.gene74935 |
| chr1.3 | mRNA | 76438559 | 76441202 | 76438559 | ID=MS.gene74935.t1;Parent=MS.gene74935 |
| chr1.3 | exon | 76441070 | 76441202 | 76441070 | ID=MS.gene74935.t1.exon1;Parent=MS.gene74935.t1 |
| chr1.3 | CDS | 76441070 | 76441202 | 76441070 | ID=cds.MS.gene74935.t1;Parent=MS.gene74935.t1 |
| chr1.3 | exon | 76440276 | 76440419 | 76440276 | ID=MS.gene74935.t1.exon2;Parent=MS.gene74935.t1 |
| chr1.3 | CDS | 76440276 | 76440419 | 76440276 | ID=cds.MS.gene74935.t1;Parent=MS.gene74935.t1 |
| chr1.3 | exon | 76439586 | 76439797 | 76439586 | ID=MS.gene74935.t1.exon3;Parent=MS.gene74935.t1 |
| chr1.3 | CDS | 76439586 | 76439797 | 76439586 | ID=cds.MS.gene74935.t1;Parent=MS.gene74935.t1 |
| chr1.3 | exon | 76438559 | 76439362 | 76438559 | ID=MS.gene74935.t1.exon4;Parent=MS.gene74935.t1 |
| chr1.3 | CDS | 76438559 | 76439362 | 76438559 | ID=cds.MS.gene74935.t1;Parent=MS.gene74935.t1 |
| Gene Sequence |
| Protein sequence |
