AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065021


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065021.t1 MTR_1g112660 95.815 454 19 0 1 454 1 454 0.0 887
MS.gene065021.t1 MTR_1g112660 96.279 430 16 0 25 454 1 430 0.0 845
MS.gene065021.t1 MTR_1g112660 97.043 372 11 0 83 454 1 372 0.0 732
MS.gene065021.t1 MTR_3g118020 45.412 425 170 13 36 444 6 384 2.39e-84 264
MS.gene065021.t1 MTR_3g118020 47.813 343 125 11 116 444 5 307 1.18e-72 231
MS.gene065021.t1 MTR_8g089530 28.708 209 135 4 256 454 217 421 2.79e-14 74.7
MS.gene065021.t1 MTR_2g006000 29.082 196 122 5 272 454 233 424 1.18e-12 69.7
MS.gene065021.t1 MTR_8g089440 28.161 174 121 3 184 356 223 393 7.28e-12 67.8
MS.gene065021.t1 MTR_8g089480 28.161 174 121 3 184 356 164 334 9.02e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065021.t1 AT2G16900 28.537 410 227 10 83 454 1 382 1.84e-38 144
MS.gene065021.t1 AT2G16900 28.537 410 227 10 83 454 1 382 1.84e-38 144
MS.gene065021.t1 AT2G16900 28.537 410 227 10 83 454 1 382 1.84e-38 144
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 204 386 2.81e-38 143
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 204 386 2.81e-38 143
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 204 386 2.81e-38 143
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 204 386 2.81e-38 143
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 219 401 3.02e-38 143
MS.gene065021.t1 AT4G35110 39.896 193 106 2 262 454 216 398 4.07e-38 143
MS.gene065021.t1 AT2G16900 37.864 206 114 3 253 454 98 293 3.46e-35 132
MS.gene065021.t1 AT2G16900 37.864 206 114 3 253 454 98 293 3.46e-35 132
MS.gene065021.t1 AT2G16900 37.864 206 114 3 253 454 98 293 3.46e-35 132
MS.gene065021.t1 AT2G16900 37.864 206 114 3 253 454 98 293 3.46e-35 132
MS.gene065021.t1 AT4G38550 34.896 192 125 0 259 450 317 508 9.17e-34 133
MS.gene065021.t1 AT4G38550 35.176 199 128 1 252 450 412 609 1.42e-33 134
MS.gene065021.t1 AT4G38550 35.176 199 128 1 252 450 412 609 1.42e-33 134
MS.gene065021.t1 AT4G38550 35.149 202 130 1 252 453 449 649 1.47e-33 134
MS.gene065021.t1 AT4G38550 34.896 192 125 0 259 450 359 550 1.55e-33 133
MS.gene065021.t1 AT5G11140 36.216 185 118 0 270 454 57 241 1.76e-33 126
MS.gene065021.t1 AT4G38560 36.181 199 125 1 258 454 323 521 1.21e-31 127
MS.gene065021.t1 AT4G38560 36.181 199 125 1 258 454 325 523 1.39e-31 127
MS.gene065021.t1 AT2G20960 34.197 193 127 0 262 454 486 678 2.56e-31 127
MS.gene065021.t1 AT2G20960 34.197 193 127 0 262 454 521 713 3.52e-31 127
MS.gene065021.t1 AT2G20960 34.197 193 127 0 262 454 556 748 3.54e-31 127
MS.gene065021.t1 AT2G20960 34.197 193 127 0 262 454 556 748 3.54e-31 127
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 196 382 1.44e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 196 382 1.44e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 225 411 3.64e-27 113
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 332 518 4.49e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 317 503 4.74e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 315 501 4.95e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 334 520 5.05e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 288 474 5.54e-27 113
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 359 545 5.55e-27 114
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 286 472 5.61e-27 113
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 281 467 6.30e-27 113
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 359 545 7.49e-27 113
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 315 501 9.60e-27 112
MS.gene065021.t1 AT2G20950 35.829 187 120 0 264 450 315 501 9.60e-27 112

Find 82 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATCCAAGGTTGATAATT+TGG 0.133061 1.2:-83376620 MS.gene065021:CDS
AAGATAAATGGCGCCAATTT+TGG 0.217899 1.2:+83377723 None:intergenic
CAAGCCACCTAAGAATAAAA+AGG 0.248587 1.2:-83379143 MS.gene065021:CDS
CTGCTTGATTTGTCTGTATC+TGG 0.279669 1.2:+83377319 None:intergenic
AGAATGTCTGGAGCTGATTC+AGG 0.287049 1.2:-83378304 MS.gene065021:intron
TGAGATGAAGTCATCTGATT+TGG 0.311588 1.2:-83376662 MS.gene065021:CDS
CAATCTATCTTTGACAAGTA+TGG 0.315042 1.2:-83377075 MS.gene065021:CDS
GTTGCAATCAACCTCAATAA+TGG 0.352010 1.2:-83376971 MS.gene065021:CDS
AGTGTTCCGGCCTCCAAAAT+TGG 0.352728 1.2:-83377736 MS.gene065021:CDS
ATGTCATCAAAACAGGTTAC+TGG 0.372121 1.2:+83377267 None:intergenic
TTTGGATAGCAGATCATTGC+TGG 0.373557 1.2:-83376602 MS.gene065021:CDS
AGCCAACAATTCCTTAACTT+TGG 0.375480 1.2:+83376936 None:intergenic
TGGTAAGGATTAGATGCTTT+AGG 0.387405 1.2:+83378352 None:intergenic
TTGAGGTTGATTGCAACTCT+TGG 0.403873 1.2:+83376977 None:intergenic
CTGTCAAGAACTGGGAGTTC+AGG 0.405904 1.2:+83377757 None:intergenic
GCCGGAACACTGTCAAGAAC+TGG 0.406161 1.2:+83377748 None:intergenic
TTCTCCAATGTCATCAAAAC+AGG 0.411746 1.2:+83377260 None:intergenic
GTCCAAAGTTAAGGAATTGT+TGG 0.414758 1.2:-83376938 MS.gene065021:CDS
ACACAGTTTGGCATAACTCT+TGG 0.416359 1.2:+83379232 None:intergenic
GGTTGGACTTTGTCATTGAC+AGG 0.416998 1.2:+83377369 None:intergenic
CCTTCGCTGCCTCCACGGAC+TGG 0.417167 1.2:+83376818 None:intergenic
TTTGACAAGTATGGCGATAT+AGG 0.417915 1.2:-83377066 MS.gene065021:CDS
CCCAGTTCTTGACAGTGTTC+CGG 0.418245 1.2:-83377749 MS.gene065021:CDS
CTTTGTTAATTCCATTATTG+AGG 0.418558 1.2:+83376960 None:intergenic
ATTAACAAAGTCCAAAGTTA+AGG 0.424679 1.2:-83376947 MS.gene065021:CDS
TGCCGCATCAGCAAGATAAA+TGG 0.426980 1.2:+83377711 None:intergenic
TTAGAAGCATATACACAGTT+TGG 0.434446 1.2:+83379220 None:intergenic
AGATTCTCAGAAACATCCTT+TGG 0.438317 1.2:+83377348 None:intergenic
TATAGGAGAAAGCTGCCATT+TGG 0.447354 1.2:-83377049 MS.gene065021:CDS
AATTGCCAGAAAAGAATGTC+TGG 0.451422 1.2:-83378316 MS.gene065021:CDS
GGCTGACTCTGATAGTGAAA+TGG 0.452176 1.2:-83376797 MS.gene065021:CDS
GGTTTCTGAGACGCGTGTTC+CGG 0.453188 1.2:-83377139 MS.gene065021:CDS
TTCACATGGTATCTTCCAAC+CGG 0.459840 1.2:+83377120 None:intergenic
TGGATGTAACAGTTACCCTT+AGG 0.467251 1.2:-83379312 MS.gene065021:intron
ACTTGTCAAAGATAGATTGC+AGG 0.471370 1.2:+83377079 None:intergenic
GCTATCCAAATTATCAACCT+TGG 0.473319 1.2:+83376615 None:intergenic
TCTCAGAAACATCCTTTGGT+TGG 0.476740 1.2:+83377352 None:intergenic
AATTGAATTCCTTGATCTTG+TGG 0.477003 1.2:+83379167 None:intergenic
AGAAAGCTGCCATTTGGAAT+CGG 0.478703 1.2:-83377043 MS.gene065021:CDS
GAGGACAGTGATGATGAAGA+GGG 0.480600 1.2:-83377174 MS.gene065021:CDS
CGCCATTTATCTTGCTGATG+CGG 0.483504 1.2:-83377713 MS.gene065021:CDS
CTTAGGTTGGTTTGTAGCAA+AGG 0.483917 1.2:-83379295 MS.gene065021:CDS
TCATTCCATTAACCTTTGAC+AGG 0.484823 1.2:-83377801 MS.gene065021:CDS
ATCAGAATAACAAAAGTGCT+TGG 0.488484 1.2:+83377212 None:intergenic
GTCAGCCTTCGCTGCCTCCA+CGG 0.492054 1.2:+83376813 None:intergenic
CCAGTCCGTGGAGGCAGCGA+AGG 0.500128 1.2:-83376818 MS.gene065021:CDS
AATGAGATAGTACCAGCTTC+TGG 0.501090 1.2:-83377640 MS.gene065021:CDS
TTGATTTGTCTGTATCTGGC+TGG 0.507213 1.2:+83377323 None:intergenic
GGTGTTATAGAAAGTGAGAT+AGG 0.519458 1.2:-83378415 MS.gene065021:CDS
CTGCTCAACTTCGCGTGACG+TGG 0.519956 1.2:-83376894 MS.gene065021:CDS
CTTTGCTACAAACCAACCTA+AGG 0.520047 1.2:+83379296 None:intergenic
GTTTGTAGCAAAGGTGAGGA+AGG 0.521953 1.2:-83379286 MS.gene065021:CDS
TTTACATCACACGCATGGTA+AGG 0.525868 1.2:+83378337 None:intergenic
GCATCACAACCGATTCCAAA+TGG 0.527475 1.2:+83377034 None:intergenic
GAAGGTCTAACTACATCAGC+TGG 0.534751 1.2:-83377240 MS.gene065021:CDS
TCAAAGATAGATTGCAGGAT+GGG 0.535446 1.2:+83377084 None:intergenic
TGAGGACAGTGATGATGAAG+AGG 0.538033 1.2:-83377175 MS.gene065021:CDS
TGTAACAGTTACCCTTAGGT+TGG 0.543413 1.2:-83379308 MS.gene065021:intron
TGATGTTCTCCGTGATAATG+AGG 0.548223 1.2:-83377193 MS.gene065021:CDS
AAATTGCATCCACAAGATCA+AGG 0.554464 1.2:-83379176 MS.gene065021:CDS
GTATGTAGTTCACCAGAAGC+TGG 0.576929 1.2:+83377628 None:intergenic
AGGTGAGACTTGTATAGAGA+TGG 0.579664 1.2:-83379266 MS.gene065021:CDS
TCTGAGACGCGTGTTCCGGT+TGG 0.579971 1.2:-83377135 MS.gene065021:CDS
CAGGCTATCTATCAAATCCA+AGG 0.583999 1.2:-83376632 MS.gene065021:CDS
GTTGGTTTGTAGCAAAGGTG+AGG 0.590459 1.2:-83379290 MS.gene065021:CDS
CCGGAACACTGTCAAGAACT+GGG 0.591723 1.2:+83377749 None:intergenic
GTCAAAGATAGATTGCAGGA+TGG 0.607166 1.2:+83377083 None:intergenic
GGCAATTTACATCACACGCA+TGG 0.610083 1.2:+83378332 None:intergenic
CAGATACAGACAAATCAAGC+AGG 0.612231 1.2:-83377318 MS.gene065021:CDS
GAGCAAAGCTTTCCTTCACA+TGG 0.615016 1.2:+83377106 None:intergenic
CATTGATGAGCACCAGTCCG+TGG 0.628033 1.2:-83376830 MS.gene065021:CDS
CATCACTGTCCTCATTATCA+CGG 0.628549 1.2:+83377184 None:intergenic
ACTACATACTCTAGATGTCA+AGG 0.630737 1.2:-83377614 MS.gene065021:intron
ATTTGGAATCGGTTGTGATG+CGG 0.643613 1.2:-83377032 MS.gene065021:CDS
GGTCTAACTACATCAGCTGG+TGG 0.651697 1.2:-83377237 MS.gene065021:CDS
TTTGCTACAAACCAACCTAA+GGG 0.653462 1.2:+83379297 None:intergenic
TTTGACTCAGAAAGAACGGG+AGG 0.654627 1.2:-83376737 MS.gene065021:CDS
CAATGACAAAGTCCAACCAA+AGG 0.663967 1.2:-83377364 MS.gene065021:CDS
TGAAGAGGGAAGTGAGTCTG+TGG 0.676872 1.2:-83377160 MS.gene065021:CDS
GGTTGGAAGATACCATGTGA+AGG 0.677016 1.2:-83377118 MS.gene065021:CDS
TGATGAGCACCAGTCCGTGG+AGG 0.694249 1.2:-83376827 MS.gene065021:CDS
ATAGTGAAATGGAATCACTG+AGG 0.783003 1.2:-83376786 MS.gene065021:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATATTTAACAAAGA+TGG - chr1.2:83378880-83378899 MS.gene065021:intron 10.0%
!! ATATATTTATATATATCTGT+AGG - chr1.2:83377802-83377821 MS.gene065021:CDS 10.0%
!! ATATTAAAACAAAAATTGAA+GGG - chr1.2:83379652-83379671 MS.gene065021:intron 10.0%
!! AGAGATTAAAAATTTATGAT+AGG + chr1.2:83377580-83377599 None:intergenic 15.0%
!! GATATTAAAACAAAAATTGA+AGG - chr1.2:83379651-83379670 MS.gene065021:intron 15.0%
!! TAATATAGTTTAGTTATGTA+TGG - chr1.2:83377526-83377545 MS.gene065021:intron 15.0%
!!! ATAATTTTTTTATGAGTTGA+TGG - chr1.2:83376749-83376768 MS.gene065021:CDS 15.0%
!!! ATTTGAGTTTTTTTGTTTAT+TGG - chr1.2:83377023-83377042 MS.gene065021:CDS 15.0%
!!! TTGTCATAATATTTTGATAT+TGG + chr1.2:83378678-83378697 None:intergenic 15.0%
!!! TTTTTGTTTTATTCAGATTT+GGG - chr1.2:83376939-83376958 MS.gene065021:CDS 15.0%
!!! TTTTTTGTTTTATTCAGATT+TGG - chr1.2:83376938-83376957 MS.gene065021:CDS 15.0%
!! AAATTGCAGATAAAAAATGA+AGG + chr1.2:83378086-83378105 None:intergenic 20.0%
!! AATTGCAGATAAAAAATGAA+GGG + chr1.2:83378085-83378104 None:intergenic 20.0%
!! AGAAGTAATAATTTATCCTT+TGG - chr1.2:83377835-83377854 MS.gene065021:intron 20.0%
!! ATATTATGACAAGAAAAAGT+TGG - chr1.2:83378686-83378705 MS.gene065021:intron 20.0%
!! TTTGTCAACTTACAAATATT+TGG - chr1.2:83378455-83378474 MS.gene065021:intron 20.0%
!!! AGTTTTTTTGTTTATTGGAT+TGG - chr1.2:83377028-83377047 MS.gene065021:CDS 20.0%
!!! ATACTCTTTTTAATATACCT+TGG - chr1.2:83377271-83377290 MS.gene065021:CDS 20.0%
!!! CAAACATTAATTTTATGACA+TGG - chr1.2:83376649-83376668 MS.gene065021:CDS 20.0%
!!! CATTTTTTATCTGCAATTTA+TGG - chr1.2:83378087-83378106 MS.gene065021:intron 20.0%
!!! TATTTTCATATAAGCTATCA+TGG + chr1.2:83377397-83377416 None:intergenic 20.0%
! AATAACTAAGTGTTCATTCA+TGG - chr1.2:83378499-83378518 MS.gene065021:intron 25.0%
! ACTAAACTATATTACCTGTT+TGG + chr1.2:83377520-83377539 None:intergenic 25.0%
! ATTAACAAAGTCCAAAGTTA+AGG - chr1.2:83379413-83379432 MS.gene065021:intron 25.0%
! CTACAATCTTCTTAAATTGT+AGG - chr1.2:83378534-83378553 MS.gene065021:intron 25.0%
! CTATTGATATTAGCACATAT+GGG - chr1.2:83377323-83377342 MS.gene065021:CDS 25.0%
! CTTTGTTAATTCCATTATTG+AGG + chr1.2:83379403-83379422 None:intergenic 25.0%
! GAAAGAACTAGAATCAAAAA+TGG - chr1.2:83379596-83379615 MS.gene065021:intron 25.0%
! GCAATTATTTCATATCAGTT+AGG + chr1.2:83377861-83377880 None:intergenic 25.0%
! TATAATCGATACAACTATAG+AGG + chr1.2:83377668-83377687 None:intergenic 25.0%
! TCTATTGATATTAGCACATA+TGG - chr1.2:83377322-83377341 MS.gene065021:CDS 25.0%
! TTAACTATATGCTATTGAGA+AGG + chr1.2:83378942-83378961 None:intergenic 25.0%
!! AAAAACTAATTAAGCCCTTT+TGG + chr1.2:83377490-83377509 None:intergenic 25.0%
!!! AAAAGCTTTGGAAAACAAAA+AGG + chr1.2:83377919-83377938 None:intergenic 25.0%
!!! AAATTTTGACTCAGAAAGAA+CGG - chr1.2:83379619-83379638 MS.gene065021:intron 25.0%
!!! AGTTTTTTCTTTATCCAAAC+AGG - chr1.2:83377503-83377522 MS.gene065021:intron 25.0%
!!! CTAATAGAATTTTCTGAAGA+GGG + chr1.2:83378797-83378816 None:intergenic 25.0%
!!! CTTTTTTTAGGCATAAAAAC+AGG + chr1.2:83377642-83377661 None:intergenic 25.0%
!!! TCTAATAGAATTTTCTGAAG+AGG + chr1.2:83378798-83378817 None:intergenic 25.0%
AAGCCACCTAAGAATAAAAA+GGG - chr1.2:83377218-83377237 MS.gene065021:CDS 30.0%
AATTGAATTCCTTGATCTTG+TGG + chr1.2:83377196-83377215 None:intergenic 30.0%
ACACCACTTTCATCTTAATT+AGG + chr1.2:83378224-83378243 None:intergenic 30.0%
AGTCTAGAAACAGATTGATT+TGG - chr1.2:83378262-83378281 MS.gene065021:intron 30.0%
AGTTAACACGACACATAAAT+TGG + chr1.2:83378195-83378214 None:intergenic 30.0%
ATGTGAAAATGAAGACAACA+AGG + chr1.2:83378846-83378865 None:intergenic 30.0%
CAATCTATCTTTGACAAGTA+TGG - chr1.2:83379285-83379304 MS.gene065021:CDS 30.0%
GATAAACACTGATACCAAAA+GGG - chr1.2:83377473-83377492 MS.gene065021:intron 30.0%
TATTGCCATATTCTTAGCTA+TGG + chr1.2:83378483-83378502 None:intergenic 30.0%
TCAAATAAGCCAATTCAAAG+AGG + chr1.2:83377297-83377316 None:intergenic 30.0%
TCTCCTAATTAAGATGAAAG+TGG - chr1.2:83378218-83378237 MS.gene065021:intron 30.0%
TGATAAACACTGATACCAAA+AGG - chr1.2:83377472-83377491 MS.gene065021:intron 30.0%
TGCAGTTACAAATGAGTATT+TGG - chr1.2:83377606-83377625 MS.gene065021:intron 30.0%
! TTAGAAGCATATACACAGTT+TGG + chr1.2:83377143-83377162 None:intergenic 30.0%
! TTGTTGTCTTCATTTTCACA+TGG - chr1.2:83378845-83378864 MS.gene065021:intron 30.0%
! TTTTTCCTGTCAAAGGTTAA+TGG + chr1.2:83378567-83378586 None:intergenic 30.0%
! TTTTTGTATCACCTTTTGCT+GGG - chr1.2:83376897-83376916 MS.gene065021:CDS 30.0%
!! ATCAGAATAACAAAAGTGCT+TGG + chr1.2:83379151-83379170 None:intergenic 30.0%
!! CAAATCCAAGGTTGATAATT+TGG - chr1.2:83379740-83379759 MS.gene065021:intron 30.0%
!! TTGTTTTATTCAGATTTGGG+TGG - chr1.2:83376942-83376961 MS.gene065021:CDS 30.0%
!!! AATTTTGACTCAGAAAGAAC+GGG - chr1.2:83379620-83379639 MS.gene065021:intron 30.0%
!!! CTATAGAGGTGACTTTTTTT+AGG + chr1.2:83377654-83377673 None:intergenic 30.0%
!!! TTTTTTGTATCACCTTTTGC+TGG - chr1.2:83376896-83376915 MS.gene065021:CDS 30.0%
AAATTGCATCCACAAGATCA+AGG - chr1.2:83377184-83377203 MS.gene065021:CDS 35.0%
AATTGCCAGAAAAGAATGTC+TGG - chr1.2:83378044-83378063 MS.gene065021:intron 35.0%
ACTACATACTCTAGATGTCA+AGG - chr1.2:83378746-83378765 MS.gene065021:intron 35.0%
ACTTGTCAAAGATAGATTGC+AGG + chr1.2:83379284-83379303 None:intergenic 35.0%
AGATTCTCAGAAACATCCTT+TGG + chr1.2:83379015-83379034 None:intergenic 35.0%
AGCCAACAATTCCTTAACTT+TGG + chr1.2:83379427-83379446 None:intergenic 35.0%
ATAGTGAAATGGAATCACTG+AGG - chr1.2:83379574-83379593 MS.gene065021:intron 35.0%
ATGTCATCAAAACAGGTTAC+TGG + chr1.2:83379096-83379115 None:intergenic 35.0%
CAAGCCACCTAAGAATAAAA+AGG - chr1.2:83377217-83377236 MS.gene065021:CDS 35.0%
CACTAGTATGAACTGATTGA+TGG + chr1.2:83378429-83378448 None:intergenic 35.0%
CCTAAGAATAAAAAGGGATC+TGG - chr1.2:83377224-83377243 MS.gene065021:CDS 35.0%
GAGTTGAGTGATTTATAGCT+AGG + chr1.2:83377883-83377902 None:intergenic 35.0%
GCTATCCAAATTATCAACCT+TGG + chr1.2:83379748-83379767 None:intergenic 35.0%
GTCCAAAGTTAAGGAATTGT+TGG - chr1.2:83379422-83379441 MS.gene065021:intron 35.0%
GTTGCAATCAACCTCAATAA+TGG - chr1.2:83379389-83379408 MS.gene065021:intron 35.0%
TCAAAGATAGATTGCAGGAT+GGG + chr1.2:83379279-83379298 None:intergenic 35.0%
TCATTCCATTAACCTTTGAC+AGG - chr1.2:83378559-83378578 MS.gene065021:intron 35.0%
TGAGATGAAGTCATCTGATT+TGG - chr1.2:83379698-83379717 MS.gene065021:intron 35.0%
TGGTAAGGATTAGATGCTTT+AGG + chr1.2:83378011-83378030 None:intergenic 35.0%
TTCTCCAATGTCATCAAAAC+AGG + chr1.2:83379103-83379122 None:intergenic 35.0%
TTTCATATCAGTTAGGCCAA+AGG + chr1.2:83377854-83377873 None:intergenic 35.0%
TTTGACAAGTATGGCGATAT+AGG - chr1.2:83379294-83379313 MS.gene065021:CDS 35.0%
TTTGACAGGAAAAAGAAGCT+AGG - chr1.2:83378573-83378592 MS.gene065021:intron 35.0%
TTTGCTACAAACCAACCTAA+GGG + chr1.2:83377066-83377085 None:intergenic 35.0%
! AAAAAGAGTATGCATCAAGC+AGG + chr1.2:83377262-83377281 None:intergenic 35.0%
! AAGATAAATGGCGCCAATTT+TGG + chr1.2:83378640-83378659 None:intergenic 35.0%
! AGTCAAAACAGAAGCATACA+TGG + chr1.2:83377741-83377760 None:intergenic 35.0%
! CCAGATCCCTTTTTATTCTT+AGG + chr1.2:83377227-83377246 None:intergenic 35.0%
! CTTTTTATTCTTAGGTGGCT+TGG + chr1.2:83377219-83377238 None:intergenic 35.0%
! CTTTTTGTAAACCCAGCAAA+AGG + chr1.2:83376911-83376930 None:intergenic 35.0%
! GATCCCTTTTTATTCTTAGG+TGG + chr1.2:83377224-83377243 None:intergenic 35.0%
! GGTGTTATAGAAAGTGAGAT+AGG - chr1.2:83377945-83377964 MS.gene065021:intron 35.0%
! TAGCTTCTTTTTCCTGTCAA+AGG + chr1.2:83378574-83378593 None:intergenic 35.0%
! TTTAACAAAGATGGTGTCAG+AGG - chr1.2:83378889-83378908 MS.gene065021:intron 35.0%
! TTTTCCAAAGCTTTTCGCAA+AGG - chr1.2:83377924-83377943 MS.gene065021:intron 35.0%
!! ATTTTGAGTGCATTCATGGT+AGG + chr1.2:83377168-83377187 None:intergenic 35.0%
!! CATCTGATTTGGAGAAAAAC+AGG - chr1.2:83379709-83379728 MS.gene065021:intron 35.0%
!! CTAGAAACAGATTGATTTGG+AGG - chr1.2:83378265-83378284 MS.gene065021:intron 35.0%
!! GGTACTATCTCATTGCTTTT+CGG + chr1.2:83378714-83378733 None:intergenic 35.0%
!! TGCAATTTTGAGTGCATTCA+TGG + chr1.2:83377172-83377191 None:intergenic 35.0%
!! TTTTGAGTGCATTCATGGTA+GGG + chr1.2:83377167-83377186 None:intergenic 35.0%
!!! GTAACCTGTTTTGATGACAT+TGG - chr1.2:83379096-83379115 MS.gene065021:intron 35.0%
!!! TGTTTTGATGACATTGGAGA+AGG - chr1.2:83379102-83379121 MS.gene065021:intron 35.0%
AAACACCATTTCTGCACTGT+TGG - chr1.2:83377553-83377572 MS.gene065021:intron 40.0%
AACACCTTTGCGAAAAGCTT+TGG + chr1.2:83377931-83377950 None:intergenic 40.0%
AATGAGATAGTACCAGCTTC+TGG - chr1.2:83378720-83378739 MS.gene065021:intron 40.0%
ACACAGTTTGGCATAACTCT+TGG + chr1.2:83377131-83377150 None:intergenic 40.0%
AGGTGAGACTTGTATAGAGA+TGG - chr1.2:83377094-83377113 MS.gene065021:CDS 40.0%
ATACCTTGGCCTCTTTGAAT+TGG - chr1.2:83377285-83377304 MS.gene065021:CDS 40.0%
CAATGACAAAGTCCAACCAA+AGG - chr1.2:83378996-83379015 MS.gene065021:intron 40.0%
CAGATACAGACAAATCAAGC+AGG - chr1.2:83379042-83379061 MS.gene065021:intron 40.0%
CAGGCTATCTATCAAATCCA+AGG - chr1.2:83379728-83379747 MS.gene065021:intron 40.0%
CATCACTGTCCTCATTATCA+CGG + chr1.2:83379179-83379198 None:intergenic 40.0%
CTTTGCTACAAACCAACCTA+AGG + chr1.2:83377067-83377086 None:intergenic 40.0%
GAAGAAAAACACATGCACTC+AGG - chr1.2:83377981-83378000 MS.gene065021:intron 40.0%
GTCAAAGATAGATTGCAGGA+TGG + chr1.2:83379280-83379299 None:intergenic 40.0%
GTCTCTTGCCATTGTATCTA+TGG - chr1.2:83378965-83378984 MS.gene065021:intron 40.0%
TATAGGAGAAAGCTGCCATT+TGG - chr1.2:83379311-83379330 MS.gene065021:intron 40.0%
TCTCAGAAACATCCTTTGGT+TGG + chr1.2:83379011-83379030 None:intergenic 40.0%
TGGAGCCATAGCTAAGAATA+TGG - chr1.2:83378475-83378494 MS.gene065021:intron 40.0%
TGGAGGCTGAAAATAAACTG+TGG - chr1.2:83378282-83378301 MS.gene065021:intron 40.0%
TGGATGTAACAGTTACCCTT+AGG - chr1.2:83377048-83377067 MS.gene065021:CDS 40.0%
TGTAACAGTTACCCTTAGGT+TGG - chr1.2:83377052-83377071 MS.gene065021:CDS 40.0%
TTCACATGGTATCTTCCAAC+CGG + chr1.2:83379243-83379262 None:intergenic 40.0%
TTTACATCACACGCATGGTA+AGG + chr1.2:83378026-83378045 None:intergenic 40.0%
TTTGGATAGCAGATCATTGC+TGG - chr1.2:83379758-83379777 MS.gene065021:intron 40.0%
! ACAGAAGCATACATGGAGAA+AGG + chr1.2:83377734-83377753 None:intergenic 40.0%
! AGAAAGCTGCCATTTGGAAT+CGG - chr1.2:83379317-83379336 MS.gene065021:intron 40.0%
! ATAAATGGCGCCAATTTTGG+AGG + chr1.2:83378637-83378656 None:intergenic 40.0%
! ATTTGGAATCGGTTGTGATG+CGG - chr1.2:83379328-83379347 MS.gene065021:intron 40.0%
! TGATGTTCTCCGTGATAATG+AGG - chr1.2:83379167-83379186 MS.gene065021:CDS 40.0%
! TTGAGGTTGATTGCAACTCT+TGG + chr1.2:83379386-83379405 None:intergenic 40.0%
!! CTGCTTGATTTGTCTGTATC+TGG + chr1.2:83379044-83379063 None:intergenic 40.0%
!! CTTAGGTTGGTTTGTAGCAA+AGG - chr1.2:83377065-83377084 MS.gene065021:CDS 40.0%
!! TATGAGTTGATGGAGTCCAA+TGG - chr1.2:83376759-83376778 MS.gene065021:CDS 40.0%
!! TTGATTTGTCTGTATCTGGC+TGG + chr1.2:83379040-83379059 None:intergenic 40.0%
AAGCCAATTCAAAGAGGCCA+AGG + chr1.2:83377291-83377310 None:intergenic 45.0%
ACAGGCTGCCATAGATACAA+TGG + chr1.2:83378976-83378995 None:intergenic 45.0%
CACCTGTATCATCACACCAT+TGG + chr1.2:83376778-83376797 None:intergenic 45.0%
CGCCATTTATCTTGCTGATG+CGG - chr1.2:83378647-83378666 MS.gene065021:intron 45.0%
GAAGGTCTAACTACATCAGC+TGG - chr1.2:83379120-83379139 MS.gene065021:intron 45.0%
GAGCAAAGCTTTCCTTCACA+TGG + chr1.2:83379257-83379276 None:intergenic 45.0%
GGCAATTTACATCACACGCA+TGG + chr1.2:83378031-83378050 None:intergenic 45.0%
GGTGTGATGATACAGGTGAT+TGG - chr1.2:83376780-83376799 MS.gene065021:CDS 45.0%
GGTTGGAAGATACCATGTGA+AGG - chr1.2:83379242-83379261 MS.gene065021:CDS 45.0%
GGTTGGACTTTGTCATTGAC+AGG + chr1.2:83378994-83379013 None:intergenic 45.0%
GTATGTAGTTCACCAGAAGC+TGG + chr1.2:83378735-83378754 None:intergenic 45.0%
GTCCAATGGTGTGATGATAC+AGG - chr1.2:83376773-83376792 MS.gene065021:CDS 45.0%
GTTTGTAGCAAAGGTGAGGA+AGG - chr1.2:83377074-83377093 MS.gene065021:CDS 45.0%
TAGGACCAACAGTGCAGAAA+TGG + chr1.2:83377561-83377580 None:intergenic 45.0%
TGCCGCATCAGCAAGATAAA+TGG + chr1.2:83378652-83378671 None:intergenic 45.0%
TTTGACTCAGAAAGAACGGG+AGG - chr1.2:83379623-83379642 MS.gene065021:intron 45.0%
! AAGAGGGTGTGAGAAAAGAG+GGG + chr1.2:83378781-83378800 None:intergenic 45.0%
! AGAATGTCTGGAGCTGATTC+AGG - chr1.2:83378056-83378075 MS.gene065021:intron 45.0%
! CAGCTCCAGACATTCTTTTC+TGG + chr1.2:83378052-83378071 None:intergenic 45.0%
! GAAGAGGGTGTGAGAAAAGA+GGG + chr1.2:83378782-83378801 None:intergenic 45.0%
! GAGGACAGTGATGATGAAGA+GGG - chr1.2:83379186-83379205 MS.gene065021:CDS 45.0%
! GCATCACAACCGATTCCAAA+TGG + chr1.2:83379329-83379348 None:intergenic 45.0%
! GGCTGACTCTGATAGTGAAA+TGG - chr1.2:83379563-83379582 MS.gene065021:intron 45.0%
! TCAGAGGCAGGTTAGTTATC+TGG - chr1.2:83378905-83378924 MS.gene065021:intron 45.0%
! TGAAGAGGGTGTGAGAAAAG+AGG + chr1.2:83378783-83378802 None:intergenic 45.0%
! TGAGGACAGTGATGATGAAG+AGG - chr1.2:83379185-83379204 MS.gene065021:CDS 45.0%
!! GTTGGTTTGTAGCAAAGGTG+AGG - chr1.2:83377070-83377089 MS.gene065021:CDS 45.0%
AGTGTTCCGGCCTCCAAAAT+TGG - chr1.2:83378624-83378643 MS.gene065021:intron 50.0%
CCCAGTTCTTGACAGTGTTC+CGG - chr1.2:83378611-83378630 MS.gene065021:intron 50.0%
CCGGAACACTGTCAAGAACT+GGG + chr1.2:83378614-83378633 None:intergenic 50.0%
CTGTCAAGAACTGGGAGTTC+AGG + chr1.2:83378606-83378625 None:intergenic 50.0%
GGTCTAACTACATCAGCTGG+TGG - chr1.2:83379123-83379142 MS.gene065021:intron 50.0%
TGAAGAGGGAAGTGAGTCTG+TGG - chr1.2:83379200-83379219 MS.gene065021:CDS 50.0%
! ACAAAGATGGTGTCAGAGGC+AGG - chr1.2:83378893-83378912 MS.gene065021:intron 50.0%
CATTGATGAGCACCAGTCCG+TGG - chr1.2:83379530-83379549 MS.gene065021:intron 55.0%
GCCGGAACACTGTCAAGAAC+TGG + chr1.2:83378615-83378634 None:intergenic 55.0%
!! ATGGCGCCAATTTTGGAGGC+CGG + chr1.2:83378633-83378652 None:intergenic 55.0%
!! GGTTTCTGAGACGCGTGTTC+CGG - chr1.2:83379221-83379240 MS.gene065021:CDS 55.0%
CTGCTCAACTTCGCGTGACG+TGG - chr1.2:83379466-83379485 MS.gene065021:intron 60.0%
TGATGAGCACCAGTCCGTGG+AGG - chr1.2:83379533-83379552 MS.gene065021:intron 60.0%
! TCTGAGACGCGTGTTCCGGT+TGG - chr1.2:83379225-83379244 MS.gene065021:CDS 60.0%
GTCAGCCTTCGCTGCCTCCA+CGG + chr1.2:83379550-83379569 None:intergenic 65.0%
CCAGTCCGTGGAGGCAGCGA+AGG - chr1.2:83379542-83379561 MS.gene065021:intron 70.0%
CCTTCGCTGCCTCCACGGAC+TGG + chr1.2:83379545-83379564 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 83376588 83379794 83376588 ID=MS.gene065021
chr1.2 mRNA 83376588 83379794 83376588 ID=MS.gene065021.t1;Parent=MS.gene065021
chr1.2 exon 83379776 83379794 83379776 ID=MS.gene065021.t1.exon1;Parent=MS.gene065021.t1
chr1.2 CDS 83379776 83379794 83379776 ID=cds.MS.gene065021.t1;Parent=MS.gene065021.t1
chr1.2 exon 83379137 83379322 83379137 ID=MS.gene065021.t1.exon2;Parent=MS.gene065021.t1
chr1.2 CDS 83379137 83379322 83379137 ID=cds.MS.gene065021.t1;Parent=MS.gene065021.t1
chr1.2 exon 83378305 83378448 83378305 ID=MS.gene065021.t1.exon3;Parent=MS.gene065021.t1
chr1.2 CDS 83378305 83378448 83378305 ID=cds.MS.gene065021.t1;Parent=MS.gene065021.t1
chr1.2 exon 83377615 83377826 83377615 ID=MS.gene065021.t1.exon4;Parent=MS.gene065021.t1
chr1.2 CDS 83377615 83377826 83377615 ID=cds.MS.gene065021.t1;Parent=MS.gene065021.t1
chr1.2 exon 83376588 83377391 83376588 ID=MS.gene065021.t1.exon5;Parent=MS.gene065021.t1
chr1.2 CDS 83376588 83377391 83376588 ID=cds.MS.gene065021.t1;Parent=MS.gene065021.t1
Gene Sequence

>MS.gene065021

ATGGGCGTCTCTATTTGCTGTATGTCTTTGTTTTATGTTTTTTTATTTTGTTTTAGATAATCAAACATTAATTTTATGACATGGAAATGCTGTTTTATTTGTGTTTTTTCGATTTTTTTTGAGCTGTTTTTCGATAAGAAAAGAAATATGCATTCAAAAAAATAATTTTTTTATGAGTTGATGGAGTCCAATGGTGTGATGATACAGGTGATTGGACTCTGCTATTTTTTATTTTTTTTATTCTCATGCATTGAATACTGTATAAAAGATGAATTGAAAGTTTGATTTTTTTATTTATGTTCTTGTAGTTTTTTGTATCACCTTTTGCTGGGTTTACAAAAAGTTTATTTTTTTTTGTTTTATTCAGATTTGGGTGGAAATTTATGTGTTACTCTTTTTCTTGTGTATGTGTAGTGATGATATGATATATGTTTAATTTGAGTTTTTTTGTTTATTGGATTGGATGTAACAGTTACCCTTAGGTTGGTTTGTAGCAAAGGTGAGGAAGGTGAGACTTGTATAGAGATGGCTCAGAAGAATCCAAGAGTTATGCCAAACTGTGTATATGCTTCTAATCCCTACCATGAATGCACTCAAAATTGCATCCACAAGATCAAGGAATTCAATTCCAAGCCACCTAAGAATAAAAAGGGATCTGGTTAGTTCTTCTTCCTGCTTGATGCATACTCTTTTTAATATACCTTGGCCTCTTTGAATTGGCTTATTTGAGCTTATCTATTGATATTAGCACATATGGGACTGCTTGACATGTTAATATATTGTTTTCAGCTTATTTCAATGACTATCCATGATAGCTTATATGAAAATAGTTTGATTTTGTTTTATCTTTTGTTACAAAAATAGCTTATGCATAAGTGCTTATATGATAAACACTGATACCAAAAGGGCTTAATTAGTTTTTTCTTTATCCAAACAGGTAATATAGTTTAGTTATGTATGGAGTAAAACACCATTTCTGCACTGTTGGTCCTATCATAAATTTTTAATCTCTCAGAACTGCAGTTACAAATGAGTATTTGGCTTGTGACATCCTGTTTTTATGCCTAAAAAAAGTCACCTCTATAGTTGTATCGATTATAACTGCTTACTGATATATGTTGCTGTTTTGTTTTTGTTTCTTTTCCTTTCTCCATGTATGCTTCTGTTTTGACTTGTTCATATATATATATATATATATATATATATATATATATATATATTTATATATATCTGTAGGTTATTTTGACAGAAGTAATAATTTATCCTTTGGCCTAACTGATATGAAATAATTGCCTAGCTATAAATCACTCAACTCTTATAAAATCTGTCCTTTTTGTTTTCCAAAGCTTTTCGCAAAGGTGTTATAGAAAGTGAGATAGGCAAAAAGATGAACGAAGAAAAACACATGCACTCAGGATGTCCTAAAGCATCTAATCCTTACCATGCGTGTGATGTAAATTGCCAGAAAAGAATGTCTGGAGCTGATTCAGGTTTCCCTTCATTTTTTATCTGCAATTTATGGATATCAAATTCAATGTGTGCAACTCAGTGACAATTTTCTCGTTTTTATATATAGCGTGTGTCTTCTTGTCAGTGCGCTTCTTCCAATTTATGTGTCGTGTTAACTTTGTCTCCTAATTAAGATGAAAGTGGTGTGTAATTTATCTTGAATTGAGTCTAGAAACAGATTGATTTGGAGGCTGAAAATAAACTGTGGTGTCATTTGATATAATACAGTTTTCAGCAACTTTTGTACAAATGATATAAACTGACATTATGATTTTGTTTAATCATTCAATGATAACAAATTAATCTTCTCTGACAAAATATTTTATTATCCATCAATCAGTTCATACTAGTGAATGAGTTTGTCAACTTACAAATATTTGGAGCCATAGCTAAGAATATGGCAATAACTAAGTGTTCATTCATGGATGTGTATCTGACTACAATCTTCTTAAATTGTAGGTGTCATTCCATTAACCTTTGACAGGAAAAAGAAGCTAGGTTCTAGACCTGAACTCCCAGTTCTTGACAGTGTTCCGGCCTCCAAAATTGGCGCCATTTATCTTGCTGATGCGGCATCACCAATATCAAAATATTATGACAAGAAAAAGTTGGAACCGAAAAGCAATGAGATAGTACCAGCTTCTGGTGAACTACATACTCTAGATGTCAAGGTAATAGCAACCCCTCTTTTCTCACACCCTCTTCAGAAAATTCTATTAGAGATATTGTTAGTTAAGAGTTAGTTACCTTGTTGTCTTCATTTTCACATGGACTTGTGTATCAATAAATATATTTAACAAAGATGGTGTCAGAGGCAGGTTAGTTATCTGGTATATAACTAACCTTCTCAATAGCATATAGTTAACTTGTCTCTTGCCATTGTATCTATGGCAGCCTGTCAATGACAAAGTCCAACCAAAGGATGTTTCTGAGAATCTTGCCAGCCAGATACAGACAAATCAAGCAGGCGACAAAAACTCTTCAAACAAAGTTGTTCCAGTAACCTGTTTTGATGACATTGGAGAAGGTCTAACTACATCAGCTGGTGGATCCAAGCACTTTTGTTATTCTGATGTTCTCCGTGATAATGAGGACAGTGATGATGAAGAGGGAAGTGAGTCTGTGGTTTCTGAGACGCGTGTTCCGGTTGGAAGATACCATGTGAAGGAAAGCTTTGCTCCCATCCTGCAATCTATCTTTGACAAGTATGGCGATATAGGAGAAAGCTGCCATTTGGAATCGGTTGTGATGCGGTCTTATTACATCGAGTGTGTGTGCTTTGTGATCCAAGAGTTGCAATCAACCTCAATAATGGAATTAACAAAGTCCAAAGTTAAGGAATTGTTGGCTATTCTTAATGATGTAGAGTCTGCTCAACTTCGCGTGACGTGGTTGCGTACTGTCGTCAATGAAATTGCTGAAAACATCAAACTCATTGATGAGCACCAGTCCGTGGAGGCAGCGAAGGCTGACTCTGATAGTGAAATGGAATCACTGAGGAAAGAACTAGAATCAAAAATGGAAATTTTGACTCAGAAAGAACGGGAGGTAACTGATATTAAAACAAAAATTGAAGGGATTAGAGAGCGACTCAGCGAGCTTGAGATGAAGTCATCTGATTTGGAGAAAAACAGGCTATCTATCAAATCCAAGGTTGATAATTTGGATAGCAGATCATTGCTGGATGAACTACTTTAA

Protein sequence

>MS.gene065021.t1

MGVSICFTLRLVCSKGEEGETCIEMAQKNPRVMPNCVYASNPYHECTQNCIHKIKEFNSKPPKNKKGSAFRKGVIESEIGKKMNEEKHMHSGCPKASNPYHACDVNCQKRMSGADSGVIPLTFDRKKKLGSRPELPVLDSVPASKIGAIYLADAASPISKYYDKKKLEPKSNEIVPASGELHTLDVKPVNDKVQPKDVSENLASQIQTNQAGDKNSSNKVVPVTCFDDIGEGLTTSAGGSKHFCYSDVLRDNEDSDDEEGSESVVSETRVPVGRYHVKESFAPILQSIFDKYGDIGESCHLESVVMRSYYIECVCFVIQELQSTSIMELTKSKVKELLAILNDVESAQLRVTWLRTVVNEIAENIKLIDEHQSVEAAKADSDSEMESLRKELESKMEILTQKEREVTDIKTKIEGIRERLSELEMKSSDLEKNRLSIKSKVDNLDSRSLLDELL