Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68141.t1 | XP_003604055.2 | 84.3 | 396 | 42 | 3 | 6 | 394 | 3 | 385 | 1.60E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68141.t1 | G7J8J7 | 84.3 | 396 | 42 | 3 | 6 | 394 | 3 | 385 | 1.1e-154 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene68141 | 0.838355 | 3.02E-57 | -1.69E-46 |
| MS.gene050148 | MS.gene68141 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene68141 | 0.842708 | 2.19E-58 | -1.69E-46 |
| MS.gene051959 | MS.gene68141 | 0.851399 | 9.10E-61 | -1.69E-46 |
| MS.gene051960 | MS.gene68141 | 0.841977 | 3.42E-58 | -1.69E-46 |
| MS.gene052053 | MS.gene68141 | 0.81742 | 3.33E-52 | -1.69E-46 |
| MS.gene052537 | MS.gene68141 | 0.80274 | 4.86E-49 | -1.69E-46 |
| MS.gene052570 | MS.gene68141 | 0.80612 | 9.60E-50 | -1.69E-46 |
| MS.gene053932 | MS.gene68141 | 0.819526 | 1.11E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene68141 | 0.83022 | 3.32E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene68141 | 0.81763 | 2.98E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene68141 | 0.825249 | 5.20E-54 | -1.69E-46 |
| MS.gene05861 | MS.gene68141 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene05862 | MS.gene68141 | 0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene05969 | MS.gene68141 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene06023 | MS.gene68141 | 0.841683 | 4.10E-58 | -1.69E-46 |
| MS.gene06061 | MS.gene68141 | 0.828854 | 7.13E-55 | -1.69E-46 |
| MS.gene061045 | MS.gene68141 | 0.817338 | 3.47E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene68141 | 0.822899 | 1.85E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68141 | MS.gene037275 | PPI |
| MS.gene68141 | MS.gene74935 | PPI |
| MS.gene68141 | MS.gene029288 | PPI |
| MS.gene063094 | MS.gene68141 | PPI |
| MS.gene68141 | MS.gene68740 | PPI |
| MS.gene029288 | MS.gene68141 | PPI |
| MS.gene014205 | MS.gene68141 | PPI |
| MS.gene037275 | MS.gene68141 | PPI |
| MS.gene065021 | MS.gene68141 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68141.t1 | MTR_3g118020 | 89.899 | 396 | 20 | 5 | 6 | 394 | 3 | 385 | 0.0 | 651 |
| MS.gene68141.t1 | MTR_3g118020 | 92.114 | 317 | 12 | 2 | 78 | 394 | 5 | 308 | 0.0 | 578 |
| MS.gene68141.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 9 | 393 | 12 | 420 | 5.72e-107 | 322 |
| MS.gene68141.t1 | MTR_1g112660 | 48.122 | 426 | 163 | 16 | 9 | 393 | 36 | 444 | 1.88e-106 | 321 |
| MS.gene68141.t1 | MTR_1g112660 | 49.333 | 375 | 141 | 13 | 53 | 393 | 3 | 362 | 2.06e-99 | 300 |
| MS.gene68141.t1 | MTR_8g089440 | 29.213 | 178 | 110 | 6 | 161 | 331 | 253 | 421 | 7.98e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 11 | 386 | 3.41e-39 | 144 |
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 11 | 386 | 3.41e-39 | 144 |
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 11 | 386 | 3.41e-39 | 144 |
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 11 | 386 | 3.41e-39 | 144 |
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 26 | 401 | 3.78e-39 | 144 |
| MS.gene68141.t1 | AT4G35110 | 31.527 | 406 | 228 | 15 | 9 | 394 | 23 | 398 | 4.86e-39 | 144 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 196 | 356 | 7.65e-34 | 130 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 196 | 356 | 7.65e-34 | 130 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 196 | 356 | 7.65e-34 | 130 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 107 | 267 | 1.19e-33 | 127 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 107 | 267 | 1.19e-33 | 127 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 107 | 267 | 1.19e-33 | 127 |
| MS.gene68141.t1 | AT2G16900 | 39.521 | 167 | 94 | 2 | 205 | 370 | 107 | 267 | 1.19e-33 | 127 |
| MS.gene68141.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 210 | 393 | 557 | 738 | 3.20e-28 | 117 |
| MS.gene68141.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 210 | 393 | 557 | 738 | 3.20e-28 | 117 |
| MS.gene68141.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 204 | 370 | 416 | 583 | 3.97e-28 | 116 |
| MS.gene68141.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 204 | 370 | 416 | 583 | 3.97e-28 | 116 |
| MS.gene68141.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 210 | 393 | 522 | 703 | 4.09e-28 | 117 |
| MS.gene68141.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 204 | 370 | 453 | 620 | 4.17e-28 | 116 |
| MS.gene68141.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 204 | 370 | 315 | 482 | 4.76e-28 | 115 |
| MS.gene68141.t1 | AT2G20960 | 32.432 | 185 | 121 | 3 | 210 | 393 | 487 | 668 | 4.84e-28 | 116 |
| MS.gene68141.t1 | AT4G38550 | 33.333 | 168 | 111 | 1 | 204 | 370 | 357 | 524 | 5.42e-28 | 115 |
| MS.gene68141.t1 | AT4G38560 | 38.889 | 162 | 98 | 1 | 210 | 370 | 330 | 491 | 4.50e-27 | 113 |
| MS.gene68141.t1 | AT4G38560 | 38.889 | 162 | 98 | 1 | 210 | 370 | 332 | 493 | 4.73e-27 | 112 |
| MS.gene68141.t1 | AT5G11140 | 34.270 | 178 | 113 | 3 | 217 | 393 | 57 | 231 | 5.70e-26 | 105 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 332 | 492 | 3.33e-22 | 98.6 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 334 | 494 | 3.76e-22 | 98.6 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 317 | 477 | 4.39e-22 | 98.2 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 315 | 475 | 4.60e-22 | 98.2 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 350 | 519 | 5.15e-22 | 98.2 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 187 | 356 | 5.17e-22 | 97.1 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 187 | 356 | 5.17e-22 | 97.1 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 286 | 446 | 5.97e-22 | 97.8 |
| MS.gene68141.t1 | AT2G20950 | 34.161 | 161 | 105 | 1 | 211 | 370 | 288 | 448 | 5.98e-22 | 97.8 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 350 | 519 | 7.60e-22 | 97.8 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 306 | 475 | 1.27e-21 | 97.1 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 306 | 475 | 1.27e-21 | 97.1 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 272 | 441 | 1.37e-21 | 96.7 |
| MS.gene68141.t1 | AT2G20950 | 33.529 | 170 | 112 | 1 | 202 | 370 | 216 | 385 | 1.44e-21 | 96.3 |
Find 83 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAACGATCTCTGATTTC+AGG | 0.204618 | 3.1:+92792620 | None:intergenic |
| GTTTGGTTCCCTTTGTCTTT+TGG | 0.221002 | 3.1:+92794218 | None:intergenic |
| TGATAAGGATTGGATGATTT+AGG | 0.249464 | 3.1:+92794106 | None:intergenic |
| GCCAGAGAAACTAAAATCTT+TGG | 0.259330 | 3.1:+92793156 | None:intergenic |
| CGGAAGAAGATTGTAATTCT+TGG | 0.286432 | 3.1:+92792903 | None:intergenic |
| CCATCCTTAACTTGATCTTT+AGG | 0.299650 | 3.1:+92793289 | None:intergenic |
| CTTGAGCAGCTCATGTCTTC+AGG | 0.305135 | 3.1:-92792593 | MS.gene68141:CDS |
| CTTGACAAGTATGGTGATAT+AGG | 0.315358 | 3.1:-92792992 | MS.gene68141:CDS |
| GATGCCAATTGCAACAATTC+AGG | 0.316155 | 3.1:-92794076 | MS.gene68141:intron |
| TACAATGTCAAAGAAAGTTT+TGG | 0.326292 | 3.1:-92793034 | MS.gene68141:CDS |
| GTTTCATCAGAATTGGTTAC+TGG | 0.334578 | 3.1:+92793193 | None:intergenic |
| AATAATAGAAAGGTTATTAA+TGG | 0.347675 | 3.1:-92794160 | MS.gene68141:CDS |
| TTCACCAGTTTCATCAGAAT+TGG | 0.348026 | 3.1:+92793186 | None:intergenic |
| GATGAGATCATTCCTTCTTC+TGG | 0.358336 | 3.1:-92793448 | MS.gene68141:CDS |
| TTGACAAGTATGGTGATATA+GGG | 0.359918 | 3.1:-92792991 | MS.gene68141:CDS |
| CTTCTTCCTATGATCAATCT+TGG | 0.363222 | 3.1:+92793546 | None:intergenic |
| ACTTGTCAAGTATTGTTTGT+AGG | 0.367480 | 3.1:+92793005 | None:intergenic |
| ATGTGTAATTGAGCAGAAAT+TGG | 0.373749 | 3.1:+92793424 | None:intergenic |
| CAAACAATACTTGACAAGTA+TGG | 0.386291 | 3.1:-92793001 | MS.gene68141:CDS |
| TCTGAATCCCGTGTTTCAAT+TGG | 0.388960 | 3.1:-92793061 | MS.gene68141:CDS |
| GATCTCTGATTTCAGGAATT+CGG | 0.392697 | 3.1:+92792627 | None:intergenic |
| TATAGGGGCAAGCTGTGATT+TGG | 0.401703 | 3.1:-92792975 | MS.gene68141:CDS |
| GACCAAAGTGAGTGAATTGT+TGG | 0.402832 | 3.1:-92792867 | MS.gene68141:CDS |
| GATTAGTCACCATCAGGATA+TGG | 0.405327 | 3.1:-92792759 | MS.gene68141:CDS |
| TGATCTATCTTTGACTTGAT+AGG | 0.411943 | 3.1:+92792545 | None:intergenic |
| GGAACCTGAATTGTTGCAAT+TGG | 0.412011 | 3.1:+92794072 | None:intergenic |
| AGCAGCAACATGACGTGGTT+TGG | 0.417524 | 3.1:+92794201 | None:intergenic |
| GTAACCAATTCTGATGAAAC+TGG | 0.417672 | 3.1:-92793190 | MS.gene68141:CDS |
| TGAATTGTTGGATATTGTTA+AGG | 0.426225 | 3.1:-92792855 | MS.gene68141:CDS |
| ATTACACATCCCAGATGTTA+TGG | 0.434766 | 3.1:-92793410 | MS.gene68141:intron |
| GGTGGAACACTTTGAAGAAC+AGG | 0.435930 | 3.1:+92793502 | None:intergenic |
| AGGGACAGTACCATAACATC+TGG | 0.436687 | 3.1:+92793400 | None:intergenic |
| GGCTAACTATGATCGTGAAA+TGG | 0.440278 | 3.1:-92792726 | MS.gene68141:CDS |
| TCACCATCAGGATATGGAAA+TGG | 0.446433 | 3.1:-92792753 | MS.gene68141:CDS |
| CATGGAGTGTGTATGCTTTG+TGG | 0.449719 | 3.1:-92792927 | MS.gene68141:CDS |
| TTGGCATCACACTTATGATA+AGG | 0.450367 | 3.1:+92794091 | None:intergenic |
| TAGTATCTATTTCTTTGTTG+TGG | 0.469830 | 3.1:+92793119 | None:intergenic |
| TGAATTGATTAGTCACCATC+AGG | 0.473279 | 3.1:-92792765 | MS.gene68141:CDS |
| ATCCAACAATTCACTCACTT+TGG | 0.473716 | 3.1:+92792865 | None:intergenic |
| TCTTTGTTGTGGAGAGGAAG+GGG | 0.483390 | 3.1:+92793130 | None:intergenic |
| TTTGGTCTTACTTATTGAAT+CGG | 0.484588 | 3.1:+92792883 | None:intergenic |
| GCAGCCTAAAGATCAAGTTA+AGG | 0.486423 | 3.1:-92793293 | MS.gene68141:intron |
| GTCAAGTATTGTTTGTAGGA+TGG | 0.493819 | 3.1:+92793009 | None:intergenic |
| GCTTGAGTGCATTGATGGTA+AGG | 0.495066 | 3.1:+92794247 | None:intergenic |
| TTCTTTGTTGTGGAGAGGAA+GGG | 0.496215 | 3.1:+92793129 | None:intergenic |
| TGTGTAATTGAGCAGAAATT+GGG | 0.497868 | 3.1:+92793425 | None:intergenic |
| CTTTGAAGAACAGGAGGTTG+TGG | 0.499804 | 3.1:+92793511 | None:intergenic |
| TCAGGATATGGAAATGGAAA+AGG | 0.500818 | 3.1:-92792747 | MS.gene68141:CDS |
| TTTCTTTGTTGTGGAGAGGA+AGG | 0.502763 | 3.1:+92793128 | None:intergenic |
| GAAATAGATACTAGTAGCGA+AGG | 0.504275 | 3.1:-92793109 | MS.gene68141:CDS |
| AGAACAGCTAGAATCAGAGT+TGG | 0.506724 | 3.1:-92792693 | MS.gene68141:CDS |
| TTTCCATTTCCATATCCTGA+TGG | 0.507099 | 3.1:+92792750 | None:intergenic |
| TAAAACTGAAACAAAGAAAG+AGG | 0.508090 | 3.1:-92793245 | MS.gene68141:CDS |
| GCAGAAATTGGGCCAGAAGA+AGG | 0.508734 | 3.1:+92793436 | None:intergenic |
| CTCATTCCAAGATTGATCAT+AGG | 0.510237 | 3.1:-92793552 | MS.gene68141:CDS |
| AGCAAGCTTGAGTGCATTGA+TGG | 0.510384 | 3.1:+92794242 | None:intergenic |
| ATCACACTTATGATAAGGAT+TGG | 0.522199 | 3.1:+92794096 | None:intergenic |
| AAACCACGTCATGTTGCTGC+TGG | 0.535348 | 3.1:-92794199 | MS.gene68141:CDS |
| CAAGATTGATCATAGGAAGA+AGG | 0.551150 | 3.1:-92793545 | MS.gene68141:CDS |
| CTGCTCATCTTCGTGTAGCA+TGG | 0.552976 | 3.1:-92792823 | MS.gene68141:CDS |
| AAGTAATAGCAATAATAGAA+AGG | 0.561570 | 3.1:-92794170 | MS.gene68141:CDS |
| AGAATCAGAGTTGGAAACAT+TGG | 0.561728 | 3.1:-92792684 | MS.gene68141:CDS |
| AATAGAAAGGTTATTAATGG+AGG | 0.564289 | 3.1:-92794157 | MS.gene68141:CDS |
| TGTAATGAGGTCATATTACA+TGG | 0.570115 | 3.1:-92792945 | MS.gene68141:CDS |
| GCTTGCTCCCAAAAGACAAA+GGG | 0.570196 | 3.1:-92794226 | MS.gene68141:CDS |
| AGCTTGCTCCCAAAAGACAA+AGG | 0.578029 | 3.1:-92794227 | MS.gene68141:CDS |
| CTATGATCAATCTTGGAATG+AGG | 0.584964 | 3.1:+92793553 | None:intergenic |
| TCTATTTCTTTGTTGTGGAG+AGG | 0.590301 | 3.1:+92793124 | None:intergenic |
| CTTTGACTTGATAGGTAGCG+TGG | 0.591078 | 3.1:+92792553 | None:intergenic |
| GATTGATCATAGGAAGAAGG+TGG | 0.597603 | 3.1:-92793542 | MS.gene68141:CDS |
| CCTAAAGATCAAGTTAAGGA+TGG | 0.613275 | 3.1:-92793289 | MS.gene68141:CDS |
| ATTTGGAATCAGTTGTAATG+AGG | 0.618166 | 3.1:-92792958 | MS.gene68141:CDS |
| ATCAATCTTGGAATGAGGAG+TGG | 0.623309 | 3.1:+92793558 | None:intergenic |
| TGACAAGTATGGTGATATAG+GGG | 0.624821 | 3.1:-92792990 | MS.gene68141:CDS |
| ATTGGCTCAGAAAGAACAAG+AGG | 0.625513 | 3.1:-92792666 | MS.gene68141:CDS |
| TAGATGATGTCTAGTAGCAA+CGG | 0.628729 | 3.1:-92794292 | MS.gene68141:CDS |
| AGTTAAGGATGGTGCTACTG+AGG | 0.634421 | 3.1:-92793278 | MS.gene68141:CDS |
| TCTGATGAAACTGGTGAAGG+TGG | 0.634531 | 3.1:-92793181 | MS.gene68141:CDS |
| GGGACAGTACCATAACATCT+GGG | 0.646171 | 3.1:+92793401 | None:intergenic |
| ATTGATCATAGGAAGAAGGT+GGG | 0.646766 | 3.1:-92793541 | MS.gene68141:CDS |
| GGAACACTTTGAAGAACAGG+AGG | 0.650409 | 3.1:+92793505 | None:intergenic |
| GTACCAGCAGCAACATGACG+TGG | 0.674649 | 3.1:+92794196 | None:intergenic |
| AATTCTGATGAAACTGGTGA+AGG | 0.697682 | 3.1:-92793184 | MS.gene68141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAAATTATAAGTGT+TGG | + | chr3.1:92792974-92792993 | None:intergenic | 10.0% |
| !!! | TTTTTACAAAAATAAATAGA+GGG | - | chr3.1:92792867-92792886 | MS.gene68141:CDS | 10.0% |
| !!! | TTTTTTACAAAAATAAATAG+AGG | - | chr3.1:92792866-92792885 | MS.gene68141:CDS | 10.0% |
| !! | AATAATAGAAAGGTTATTAA+TGG | - | chr3.1:92792664-92792683 | MS.gene68141:CDS | 15.0% |
| !!! | ATATATGGTTTATTATCTTT+TGG | + | chr3.1:92793476-92793495 | None:intergenic | 15.0% |
| !!! | TTTGGTTTTATATTAACAAA+AGG | + | chr3.1:92793458-92793477 | None:intergenic | 15.0% |
| !! | AAGTAATAGCAATAATAGAA+AGG | - | chr3.1:92792654-92792673 | MS.gene68141:CDS | 20.0% |
| !! | ATAAAATAAGATCAAATTGC+AGG | - | chr3.1:92793241-92793260 | MS.gene68141:CDS | 20.0% |
| !!! | TTCTTTGTTTCAGTTTTATT+GGG | + | chr3.1:92793577-92793596 | None:intergenic | 20.0% |
| !!! | TTTAAATTATAAGTGTTGGT+TGG | + | chr3.1:92792970-92792989 | None:intergenic | 20.0% |
| !!! | TTTCTTTGTTTCAGTTTTAT+TGG | + | chr3.1:92793578-92793597 | None:intergenic | 20.0% |
| !!! | TTTTTGTTATGAGAATAATG+TGG | + | chr3.1:92793355-92793374 | None:intergenic | 20.0% |
| ! | AATAGAAAGGTTATTAATGG+AGG | - | chr3.1:92792667-92792686 | MS.gene68141:CDS | 25.0% |
| ! | AATAGAGGGTTTATGAAAAA+TGG | - | chr3.1:92792881-92792900 | MS.gene68141:CDS | 25.0% |
| ! | AATGAAATGGTCAAACAAAA+TGG | + | chr3.1:92793094-92793113 | None:intergenic | 25.0% |
| ! | ATTAACAAAAGGTTGTGTAA+AGG | + | chr3.1:92793447-92793466 | None:intergenic | 25.0% |
| ! | TAAAACTGAAACAAAGAAAG+AGG | - | chr3.1:92793579-92793598 | MS.gene68141:intron | 25.0% |
| ! | TATTAGATTGAATACGATAG+TGG | + | chr3.1:92792921-92792940 | None:intergenic | 25.0% |
| ! | TGAATTGTTGGATATTGTTA+AGG | - | chr3.1:92793969-92793988 | MS.gene68141:intron | 25.0% |
| ! | TTAACAAAAGGTTGTGTAAA+GGG | + | chr3.1:92793446-92793465 | None:intergenic | 25.0% |
| !! | TACAATGTCAAAGAAAGTTT+TGG | - | chr3.1:92793790-92793809 | MS.gene68141:intron | 25.0% |
| !! | TAGTATCTATTTCTTTGTTG+TGG | + | chr3.1:92793708-92793727 | None:intergenic | 25.0% |
| !! | TGTATTTTCCAATTGAAACA+CGG | + | chr3.1:92793774-92793793 | None:intergenic | 25.0% |
| !!! | TCTTTGTTTCAGTTTTATTG+GGG | + | chr3.1:92793576-92793595 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTACTTATTGAAT+CGG | + | chr3.1:92793944-92793963 | None:intergenic | 25.0% |
| ACCAATCCATTCTAATGAAA+TGG | + | chr3.1:92793107-92793126 | None:intergenic | 30.0% | |
| ACCATTTCATTAGAATGGAT+TGG | - | chr3.1:92793103-92793122 | MS.gene68141:CDS | 30.0% | |
| ATCACACTTATGATAAGGAT+TGG | + | chr3.1:92792731-92792750 | None:intergenic | 30.0% | |
| ATGTGTAATTGAGCAGAAAT+TGG | + | chr3.1:92793403-92793422 | None:intergenic | 30.0% | |
| CAAACAATACTTGACAAGTA+TGG | - | chr3.1:92793823-92793842 | MS.gene68141:intron | 30.0% | |
| GTTTGACCATTTCATTAGAA+TGG | - | chr3.1:92793098-92793117 | MS.gene68141:CDS | 30.0% | |
| TGATAAGGATTGGATGATTT+AGG | + | chr3.1:92792721-92792740 | None:intergenic | 30.0% | |
| TGTAATGAGGTCATATTACA+TGG | - | chr3.1:92793879-92793898 | MS.gene68141:intron | 30.0% | |
| TGTGTAATTGAGCAGAAATT+GGG | + | chr3.1:92793402-92793421 | None:intergenic | 30.0% | |
| TTGACAAGTATGGTGATATA+GGG | - | chr3.1:92793833-92793852 | MS.gene68141:intron | 30.0% | |
| ! | ACTTGTCAAGTATTGTTTGT+AGG | + | chr3.1:92793822-92793841 | None:intergenic | 30.0% |
| ! | ATTTGGAATCAGTTGTAATG+AGG | - | chr3.1:92793866-92793885 | MS.gene68141:intron | 30.0% |
| ! | GTATTTTCCAATTGAAACAC+GGG | + | chr3.1:92793773-92793792 | None:intergenic | 30.0% |
| !! | TGATCTATCTTTGACTTGAT+AGG | + | chr3.1:92794282-92794301 | None:intergenic | 30.0% |
| !!! | TCCAAAGATTTTAGTTTCTC+TGG | - | chr3.1:92793667-92793686 | MS.gene68141:intron | 30.0% |
| !!! | TGAGAATAATGTGGTTTTGT+TGG | + | chr3.1:92793346-92793365 | None:intergenic | 30.0% |
| AATTCTGATGAAACTGGTGA+AGG | - | chr3.1:92793640-92793659 | MS.gene68141:intron | 35.0% | |
| AGAATCAGAGTTGGAAACAT+TGG | - | chr3.1:92794140-92794159 | MS.gene68141:CDS | 35.0% | |
| ATCCAACAATTCACTCACTT+TGG | + | chr3.1:92793962-92793981 | None:intergenic | 35.0% | |
| ATTACACATCCCAGATGTTA+TGG | - | chr3.1:92793414-92793433 | MS.gene68141:CDS | 35.0% | |
| ATTGATCATAGGAAGAAGGT+GGG | - | chr3.1:92793283-92793302 | MS.gene68141:CDS | 35.0% | |
| CAAGATTGATCATAGGAAGA+AGG | - | chr3.1:92793279-92793298 | MS.gene68141:CDS | 35.0% | |
| CCTAAAGATCAAGTTAAGGA+TGG | - | chr3.1:92793535-92793554 | MS.gene68141:CDS | 35.0% | |
| CGGAAGAAGATTGTAATTCT+TGG | + | chr3.1:92793924-92793943 | None:intergenic | 35.0% | |
| CGTTTACATGTGTAGTAAGT+AGG | - | chr3.1:92793055-92793074 | MS.gene68141:CDS | 35.0% | |
| CTATGATCAATCTTGGAATG+AGG | + | chr3.1:92793274-92793293 | None:intergenic | 35.0% | |
| CTCATTCCAAGATTGATCAT+AGG | - | chr3.1:92793272-92793291 | MS.gene68141:CDS | 35.0% | |
| CTTCTTCCTATGATCAATCT+TGG | + | chr3.1:92793281-92793300 | None:intergenic | 35.0% | |
| CTTGACAAGTATGGTGATAT+AGG | - | chr3.1:92793832-92793851 | MS.gene68141:intron | 35.0% | |
| GAAATAGATACTAGTAGCGA+AGG | - | chr3.1:92793715-92793734 | MS.gene68141:intron | 35.0% | |
| GATCTCTGATTTCAGGAATT+CGG | + | chr3.1:92794200-92794219 | None:intergenic | 35.0% | |
| GCCAGAGAAACTAAAATCTT+TGG | + | chr3.1:92793671-92793690 | None:intergenic | 35.0% | |
| GTAACCAATTCTGATGAAAC+TGG | - | chr3.1:92793634-92793653 | MS.gene68141:intron | 35.0% | |
| GTTTCATCAGAATTGGTTAC+TGG | + | chr3.1:92793634-92793653 | None:intergenic | 35.0% | |
| TCAGGATATGGAAATGGAAA+AGG | - | chr3.1:92794077-92794096 | MS.gene68141:CDS | 35.0% | |
| TGACAAGTATGGTGATATAG+GGG | - | chr3.1:92793834-92793853 | MS.gene68141:intron | 35.0% | |
| TGCAGGAGATAAAAATGTGT+TGG | + | chr3.1:92793143-92793162 | None:intergenic | 35.0% | |
| TTCACCAGTTTCATCAGAAT+TGG | + | chr3.1:92793641-92793660 | None:intergenic | 35.0% | |
| TTGGCATCACACTTATGATA+AGG | + | chr3.1:92792736-92792755 | None:intergenic | 35.0% | |
| TTTCCATTTCCATATCCTGA+TGG | + | chr3.1:92794077-92794096 | None:intergenic | 35.0% | |
| ! | CCATCCTTAACTTGATCTTT+AGG | + | chr3.1:92793538-92793557 | None:intergenic | 35.0% |
| ! | GTCAAGTATTGTTTGTAGGA+TGG | + | chr3.1:92793818-92793837 | None:intergenic | 35.0% |
| ! | TCTATTTCTTTGTTGTGGAG+AGG | + | chr3.1:92793703-92793722 | None:intergenic | 35.0% |
| ! | TGAATTGATTAGTCACCATC+AGG | - | chr3.1:92794059-92794078 | MS.gene68141:intron | 35.0% |
| !! | TTTGGTTCCCTTTGTCTTTT+GGG | + | chr3.1:92792608-92792627 | None:intergenic | 35.0% |
| !!! | GAATAATGTGGTTTTGTTGG+TGG | + | chr3.1:92793343-92793362 | None:intergenic | 35.0% |
| !!! | TTGTTTCAGTTTTATTGGGG+AGG | + | chr3.1:92793573-92793592 | None:intergenic | 35.0% |
| AGAACAGCTAGAATCAGAGT+TGG | - | chr3.1:92794131-92794150 | MS.gene68141:CDS | 40.0% | |
| ATCAATCTTGGAATGAGGAG+TGG | + | chr3.1:92793269-92793288 | None:intergenic | 40.0% | |
| CTCAAACGATCTCTGATTTC+AGG | + | chr3.1:92794207-92794226 | None:intergenic | 40.0% | |
| GACCAAAGTGAGTGAATTGT+TGG | - | chr3.1:92793957-92793976 | MS.gene68141:intron | 40.0% | |
| GATGAGATCATTCCTTCTTC+TGG | - | chr3.1:92793376-92793395 | MS.gene68141:intron | 40.0% | |
| GATGCCAATTGCAACAATTC+AGG | - | chr3.1:92792748-92792767 | MS.gene68141:CDS | 40.0% | |
| GATTGATCATAGGAAGAAGG+TGG | - | chr3.1:92793282-92793301 | MS.gene68141:CDS | 40.0% | |
| GCAGCCTAAAGATCAAGTTA+AGG | - | chr3.1:92793531-92793550 | MS.gene68141:CDS | 40.0% | |
| GGAACCTGAATTGTTGCAAT+TGG | + | chr3.1:92792755-92792774 | None:intergenic | 40.0% | |
| GGCTAACTATGATCGTGAAA+TGG | - | chr3.1:92794098-92794117 | MS.gene68141:CDS | 40.0% | |
| TCACCATCAGGATATGGAAA+TGG | - | chr3.1:92794071-92794090 | MS.gene68141:intron | 40.0% | |
| TCTGAATCCCGTGTTTCAAT+TGG | - | chr3.1:92793763-92793782 | MS.gene68141:intron | 40.0% | |
| TGTAATGACACAATGAGTGC+AGG | + | chr3.1:92793160-92793179 | None:intergenic | 40.0% | |
| ! | ATTGGCTCAGAAAGAACAAG+AGG | - | chr3.1:92794158-92794177 | MS.gene68141:CDS | 40.0% |
| ! | GATTAGTCACCATCAGGATA+TGG | - | chr3.1:92794065-92794084 | MS.gene68141:intron | 40.0% |
| ! | TTCTTTGTTGTGGAGAGGAA+GGG | + | chr3.1:92793698-92793717 | None:intergenic | 40.0% |
| ! | TTTCTTTGTTGTGGAGAGGA+AGG | + | chr3.1:92793699-92793718 | None:intergenic | 40.0% |
| !! | GTTTGGTTCCCTTTGTCTTT+TGG | + | chr3.1:92792609-92792628 | None:intergenic | 40.0% |
| AGCAAGCTTGAGTGCATTGA+TGG | + | chr3.1:92792585-92792604 | None:intergenic | 45.0% | |
| AGGGACAGTACCATAACATC+TGG | + | chr3.1:92793427-92793446 | None:intergenic | 45.0% | |
| CATGGAGTGTGTATGCTTTG+TGG | - | chr3.1:92793897-92793916 | MS.gene68141:intron | 45.0% | |
| CATGTGTAGTAAGTAGGTGC+AGG | - | chr3.1:92793061-92793080 | MS.gene68141:CDS | 45.0% | |
| GCTTGCTCCCAAAAGACAAA+GGG | - | chr3.1:92792598-92792617 | MS.gene68141:CDS | 45.0% | |
| GGGACAGTACCATAACATCT+GGG | + | chr3.1:92793426-92793445 | None:intergenic | 45.0% | |
| TATAGGGGCAAGCTGTGATT+TGG | - | chr3.1:92793849-92793868 | MS.gene68141:intron | 45.0% | |
| TCTGATGAAACTGGTGAAGG+TGG | - | chr3.1:92793643-92793662 | MS.gene68141:intron | 45.0% | |
| ! | AGCTTGCTCCCAAAAGACAA+AGG | - | chr3.1:92792597-92792616 | MS.gene68141:CDS | 45.0% |
| ! | CTTTGAAGAACAGGAGGTTG+TGG | + | chr3.1:92793316-92793335 | None:intergenic | 45.0% |
| ! | GCTTGAGTGCATTGATGGTA+AGG | + | chr3.1:92792580-92792599 | None:intergenic | 45.0% |
| ! | GGAACACTTTGAAGAACAGG+AGG | + | chr3.1:92793322-92793341 | None:intergenic | 45.0% |
| ! | GGTGGAACACTTTGAAGAAC+AGG | + | chr3.1:92793325-92793344 | None:intergenic | 45.0% |
| ! | TCTTTGTTGTGGAGAGGAAG+GGG | + | chr3.1:92793697-92793716 | None:intergenic | 45.0% |
| !! | AGTTAAGGATGGTGCTACTG+AGG | - | chr3.1:92793546-92793565 | MS.gene68141:CDS | 45.0% |
| !! | CTTTGACTTGATAGGTAGCG+TGG | + | chr3.1:92794274-92794293 | None:intergenic | 45.0% |
| !! | TGTTTAAATATATATATATA+TGG | + | chr3.1:92793491-92793510 | None:intergenic | 5.0% |
| AAACCACGTCATGTTGCTGC+TGG | - | chr3.1:92792625-92792644 | MS.gene68141:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3.1:92792777-92792796 | None:intergenic | 50.0% | |
| AGCAGCAACATGACGTGGTT+TGG | + | chr3.1:92792626-92792645 | None:intergenic | 50.0% | |
| AGTAAGTAGGTGCAGGTGCA+TGG | - | chr3.1:92793068-92793087 | MS.gene68141:CDS | 50.0% | |
| CTGCTCATCTTCGTGTAGCA+TGG | - | chr3.1:92794001-92794020 | MS.gene68141:intron | 50.0% | |
| CTTGAGCAGCTCATGTCTTC+AGG | - | chr3.1:92794231-92794250 | MS.gene68141:CDS | 50.0% | |
| GCAGAAATTGGGCCAGAAGA+AGG | + | chr3.1:92793391-92793410 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+AGG | + | chr3.1:92792776-92792795 | None:intergenic | 55.0% | |
| GTACCAGCAGCAACATGACG+TGG | + | chr3.1:92792631-92792650 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92792535 | 92794311 | 92792535 | ID=MS.gene68141 |
| chr3.1 | mRNA | 92792535 | 92794311 | 92792535 | ID=MS.gene68141.t1;Parent=MS.gene68141 |
| chr3.1 | exon | 92794077 | 92794311 | 92794077 | ID=MS.gene68141.t1.exon1;Parent=MS.gene68141.t1 |
| chr3.1 | CDS | 92794077 | 92794311 | 92794077 | ID=cds.MS.gene68141.t1;Parent=MS.gene68141.t1 |
| chr3.1 | exon | 92793411 | 92793583 | 92793411 | ID=MS.gene68141.t1.exon2;Parent=MS.gene68141.t1 |
| chr3.1 | CDS | 92793411 | 92793583 | 92793411 | ID=cds.MS.gene68141.t1;Parent=MS.gene68141.t1 |
| chr3.1 | exon | 92792535 | 92793311 | 92792535 | ID=MS.gene68141.t1.exon3;Parent=MS.gene68141.t1 |
| chr3.1 | CDS | 92792535 | 92793311 | 92792535 | ID=cds.MS.gene68141.t1;Parent=MS.gene68141.t1 |
| Gene Sequence |
| Protein sequence |
