Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014433.t1 | XP_003603744.1 | 98.9 | 274 | 3 | 0 | 1 | 274 | 1 | 274 | 7.80E-153 | 549.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014433.t1 | O81769 | 78.8 | 274 | 57 | 1 | 1 | 273 | 1 | 274 | 1.2e-125 | 450.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014433.t1 | G7J4Q4 | 98.9 | 274 | 3 | 0 | 1 | 274 | 1 | 274 | 5.7e-153 | 549.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50211 | MS.gene014433 | PPI |
| MS.gene014433 | MS.gene83565 | PPI |
| MS.gene014433 | MS.gene067444 | PPI |
| MS.gene014433 | MS.gene85931 | PPI |
| MS.gene014433 | MS.gene86968 | PPI |
| MS.gene014433 | MS.gene009798 | PPI |
| MS.gene014433 | MS.gene56983 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014433.t1 | MTR_3g113750 | 98.905 | 274 | 3 | 0 | 1 | 274 | 1 | 274 | 0.0 | 561 |
| MS.gene014433.t1 | MTR_1g107520 | 87.273 | 165 | 17 | 1 | 1 | 165 | 1 | 161 | 1.54e-101 | 294 |
| MS.gene014433.t1 | MTR_3g114210 | 73.649 | 148 | 30 | 3 | 31 | 169 | 1 | 148 | 3.70e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014433.t1 | AT4G31790 | 78.832 | 274 | 57 | 1 | 1 | 273 | 1 | 274 | 1.77e-165 | 459 |
| MS.gene014433.t1 | AT4G31790 | 78.832 | 274 | 57 | 1 | 1 | 273 | 1 | 274 | 1.77e-165 | 459 |
Find 62 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCAACAAAATCGAAATT+TGG | 0.119650 | 3.1:-90178951 | MS.gene014433:CDS |
| CACAGCCATTGAGCAGTTAT+TGG | 0.191629 | 3.1:-90178248 | MS.gene014433:CDS |
| ATCCAACATTTCTTCCTCTA+AGG | 0.206456 | 3.1:+90177163 | None:intergenic |
| CTTCACACACTTTGCTTGTT+AGG | 0.206959 | 3.1:-90178926 | MS.gene014433:intron |
| GTGTGTTGGGCTTGCTCGTC+TGG | 0.214070 | 3.1:-90177288 | MS.gene014433:CDS |
| TTGATATGGTTACAGATATT+CGG | 0.268916 | 3.1:-90178551 | MS.gene014433:intron |
| CATGCTGCTTTCCTTGTTGT+TGG | 0.296764 | 3.1:-90179265 | MS.gene014433:CDS |
| CTTGTTGTTGGTGATCCTTT+TGG | 0.312531 | 3.1:-90179253 | MS.gene014433:CDS |
| ATGTTATACATAATCGGTTT+AGG | 0.334885 | 3.1:-90179505 | MS.gene014433:CDS |
| ATTCAACAAAATCGAAATTT+GGG | 0.350651 | 3.1:-90178950 | MS.gene014433:CDS |
| TCTCTGTCAGCAAGAGTAAT+GGG | 0.356391 | 3.1:+90179337 | None:intergenic |
| TGTGTTTATAGTCATATATC+TGG | 0.356508 | 3.1:+90178267 | None:intergenic |
| TACATAATCGGTTTAGGCTT+GGG | 0.356873 | 3.1:-90179499 | MS.gene014433:CDS |
| CAACTACAATTGATTGACTT+TGG | 0.358077 | 3.1:-90177227 | MS.gene014433:CDS |
| TGATATGGTTACAGATATTC+GGG | 0.366444 | 3.1:-90178550 | MS.gene014433:intron |
| TACACTTCCCTTCTCTCCTT+CGG | 0.369995 | 3.1:-90179406 | MS.gene014433:CDS |
| TTGCATTGCCTAGTAATAAC+AGG | 0.375150 | 3.1:-90177197 | MS.gene014433:CDS |
| GGGTCTTGCCTGTTATTACT+AGG | 0.419136 | 3.1:+90177189 | None:intergenic |
| TACTCTTGCTGACAGAGAAA+TGG | 0.420268 | 3.1:-90179332 | MS.gene014433:CDS |
| GCATCTGTGATGAATGCAAT+TGG | 0.434280 | 3.1:-90179064 | MS.gene014433:CDS |
| AGCATGAGAAAGTTGAGCTT+GGG | 0.452656 | 3.1:+90179282 | None:intergenic |
| TCACAAGCACGTGAAGAATC+TGG | 0.453700 | 3.1:-90178220 | MS.gene014433:intron |
| GGTTTGCAGCTATATCGTTA+TGG | 0.461327 | 3.1:-90179034 | MS.gene014433:CDS |
| CAGAAGATACCGAGTGTGTT+GGG | 0.467905 | 3.1:-90177301 | MS.gene014433:CDS |
| CAATTCCCATCTTCTTAGCT+CGG | 0.470476 | 3.1:+90179107 | None:intergenic |
| ATACATAATCGGTTTAGGCT+TGG | 0.473388 | 3.1:-90179500 | MS.gene014433:CDS |
| GAAGATCAAATAATAGTAGC+TGG | 0.474742 | 3.1:-90177260 | MS.gene014433:CDS |
| CGACACTTGAATCTTTGTGC+AGG | 0.475224 | 3.1:-90178518 | MS.gene014433:intron |
| AGGCAAGACCCATCCCTTAG+AGG | 0.485446 | 3.1:-90177177 | MS.gene014433:CDS |
| CAGCATGAGAAAGTTGAGCT+TGG | 0.490714 | 3.1:+90179281 | None:intergenic |
| TCCCTTAGAGGAAGAAATGT+TGG | 0.493151 | 3.1:-90177165 | MS.gene014433:CDS |
| AAGAGAGGCCGAAGGAGAGA+AGG | 0.500937 | 3.1:+90179398 | None:intergenic |
| TCCAACATTTCTTCCTCTAA+GGG | 0.501972 | 3.1:+90177164 | None:intergenic |
| ACATTTCTTCCTCTAAGGGA+TGG | 0.508262 | 3.1:+90177168 | None:intergenic |
| TGTGTTGGGCTTGCTCGTCT+GGG | 0.512649 | 3.1:-90177287 | MS.gene014433:CDS |
| AGAGTAGGTGCGTACCCAAA+AGG | 0.522237 | 3.1:+90179238 | None:intergenic |
| TTCTCTGTCAGCAAGAGTAA+TGG | 0.522689 | 3.1:+90179336 | None:intergenic |
| CATTTCTTCCTCTAAGGGAT+GGG | 0.530511 | 3.1:+90177169 | None:intergenic |
| ACAGAAGATACCGAGTGTGT+TGG | 0.558228 | 3.1:-90177302 | MS.gene014433:CDS |
| TGTTGTCCGAGCTAAGAAGA+TGG | 0.559050 | 3.1:-90179113 | MS.gene014433:CDS |
| TGGAGAGGCCGTGTGAAGAG+AGG | 0.560627 | 3.1:+90179383 | None:intergenic |
| AAAATGCGACAAGGTTTACA+TGG | 0.566134 | 3.1:-90179434 | MS.gene014433:CDS |
| AGAGAGGCCGAAGGAGAGAA+GGG | 0.567567 | 3.1:+90179399 | None:intergenic |
| GTGTTTATAGTCATATATCT+GGG | 0.568517 | 3.1:+90178268 | None:intergenic |
| TACCTTTCTTTACTGAGACG+TGG | 0.569946 | 3.1:-90178997 | MS.gene014433:CDS |
| AATCTCCAATAACTGCTCAA+TGG | 0.570091 | 3.1:+90178243 | None:intergenic |
| CTCCACGTCTCAGTAAAGAA+AGG | 0.574685 | 3.1:+90178995 | None:intergenic |
| CATCTGTGATGAATGCAATT+GGG | 0.578682 | 3.1:-90179063 | MS.gene014433:CDS |
| GAGCAAGATATCACACTCAA+AGG | 0.583825 | 3.1:-90179472 | MS.gene014433:CDS |
| GGTTACAGATATTCGGGTGA+AGG | 0.584730 | 3.1:-90178544 | MS.gene014433:intron |
| GTTGTCCGAGCTAAGAAGAT+GGG | 0.586718 | 3.1:-90179112 | MS.gene014433:CDS |
| ACACTCGGTATCTTCTGTGT+AGG | 0.591347 | 3.1:+90177307 | None:intergenic |
| ATGAATGCAATTGGGATCTG+TGG | 0.605367 | 3.1:-90179055 | MS.gene014433:CDS |
| ACGAGCAAGCCCAACACACT+CGG | 0.610208 | 3.1:+90177292 | None:intergenic |
| CTGCACAAAGATTCAAGTGT+CGG | 0.611741 | 3.1:+90178519 | None:intergenic |
| CAAAAGGATCACCAACAACA+AGG | 0.612297 | 3.1:+90179254 | None:intergenic |
| TCCTTCGGCCTCTCTTCACA+CGG | 0.614104 | 3.1:-90179391 | MS.gene014433:CDS |
| TCTTCTTAGCTCGGACAACA+AGG | 0.625706 | 3.1:+90179116 | None:intergenic |
| GTTATTACTAGGCAATGCAA+AGG | 0.632024 | 3.1:+90177200 | None:intergenic |
| CTCTGTCAGCAAGAGTAATG+GGG | 0.635414 | 3.1:+90179338 | None:intergenic |
| GCCGTGTGAAGAGAGGCCGA+AGG | 0.658038 | 3.1:+90179390 | None:intergenic |
| TTTATAGTCATATATCTGGG+AGG | 0.687291 | 3.1:+90178271 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCGCTTAAAATATTTATA+TGG | + | chr3.1:90177969-90177988 | None:intergenic | 15.0% |
| !! | GATATTTACATGATATTATT+AGG | + | chr3.1:90177932-90177951 | None:intergenic | 15.0% |
| !! | TCTTATATTATTATCTGATT+AGG | - | chr3.1:90179216-90179235 | MS.gene014433:intron | 15.0% |
| !!! | ATATAATTTTCACTTTGATA+TGG | - | chr3.1:90178082-90178101 | MS.gene014433:intron | 15.0% |
| !! | AAAAACACCAAAATCAATAA+TGG | + | chr3.1:90177488-90177507 | None:intergenic | 20.0% |
| !! | ACAAGAAAATACATTGAATT+TGG | - | chr3.1:90177824-90177843 | MS.gene014433:intron | 20.0% |
| !! | ATAAATGAAAATCAGTGAAT+AGG | + | chr3.1:90178314-90178333 | None:intergenic | 20.0% |
| !! | ATTCAACAAAATCGAAATTT+GGG | - | chr3.1:90177697-90177716 | MS.gene014433:intron | 20.0% |
| !! | TTGATTCATTTCTATATTTG+TGG | - | chr3.1:90179148-90179167 | MS.gene014433:intron | 20.0% |
| !!! | TCATGTAAATATCTAAAACA+TGG | - | chr3.1:90177939-90177958 | MS.gene014433:intron | 20.0% |
| ! | AAACAGCCACAAATTATAAA+GGG | + | chr3.1:90178743-90178762 | None:intergenic | 25.0% |
| ! | ACCTAATCAATGGAAAATAA+AGG | + | chr3.1:90178172-90178191 | None:intergenic | 25.0% |
| ! | CTATTATGTTAGCAATATCA+TGG | - | chr3.1:90178243-90178262 | MS.gene014433:CDS | 25.0% |
| ! | CTTAAGCTATCATTAAGTAT+TGG | - | chr3.1:90178197-90178216 | MS.gene014433:intron | 25.0% |
| ! | GATTCAACAAAATCGAAATT+TGG | - | chr3.1:90177696-90177715 | MS.gene014433:intron | 25.0% |
| ! | GCAAAACAATAAAATTGCTT+AGG | + | chr3.1:90177463-90177482 | None:intergenic | 25.0% |
| ! | GTGTTTATAGTCATATATCT+GGG | + | chr3.1:90178382-90178401 | None:intergenic | 25.0% |
| ! | TAAACAGCCACAAATTATAA+AGG | + | chr3.1:90178744-90178763 | None:intergenic | 25.0% |
| ! | TATAAAGGGTAAAGGAATTT+GGG | + | chr3.1:90178729-90178748 | None:intergenic | 25.0% |
| ! | TATAGATTAGATATGAGAGT+AGG | + | chr3.1:90177427-90177446 | None:intergenic | 25.0% |
| ! | TGTGTTTATAGTCATATATC+TGG | + | chr3.1:90178383-90178402 | None:intergenic | 25.0% |
| ! | TTAAGAAACTACCTAATCAA+TGG | + | chr3.1:90178182-90178201 | None:intergenic | 25.0% |
| ! | TTATAAAGGGTAAAGGAATT+TGG | + | chr3.1:90178730-90178749 | None:intergenic | 25.0% |
| ! | TTGATATGGTTACAGATATT+CGG | - | chr3.1:90178096-90178115 | MS.gene014433:intron | 25.0% |
| !! | ATAATCTTTGAGAATGAGAA+TGG | + | chr3.1:90178938-90178957 | None:intergenic | 25.0% |
| !! | ATGTTATACATAATCGGTTT+AGG | - | chr3.1:90177142-90177161 | MS.gene014433:CDS | 25.0% |
| !! | TAATCTTTGAGAATGAGAAT+GGG | + | chr3.1:90178937-90178956 | None:intergenic | 25.0% |
| !! | TGATTAGGAAACAATTTTCT+CGG | - | chr3.1:90179231-90179250 | MS.gene014433:intron | 25.0% |
| !! | TTGCTTCTTTTATTCCATTA+GGG | + | chr3.1:90178646-90178665 | None:intergenic | 25.0% |
| !! | TTTGCTTCTTTTATTCCATT+AGG | + | chr3.1:90178647-90178666 | None:intergenic | 25.0% |
| !!! | TCCTTTATTTTCCATTGATT+AGG | - | chr3.1:90178168-90178187 | MS.gene014433:intron | 25.0% |
| !!! | TGAGTTTTGGTCTTATTAAA+TGG | - | chr3.1:90178269-90178288 | MS.gene014433:CDS | 25.0% |
| !!! | TTTGCTTCCATTATTGATTT+TGG | - | chr3.1:90177478-90177497 | MS.gene014433:intron | 25.0% |
| AACAATGAAAGTTTCCCTAA+TGG | - | chr3.1:90178629-90178648 | MS.gene014433:intron | 30.0% | |
| AGCTTATTAGAGTAAGTTTC+TGG | + | chr3.1:90178575-90178594 | None:intergenic | 30.0% | |
| ATGGAATAAAAGAAGCAAAC+TGG | - | chr3.1:90178648-90178667 | MS.gene014433:intron | 30.0% | |
| CCACAAATTATAAAGGGTAA+AGG | + | chr3.1:90178737-90178756 | None:intergenic | 30.0% | |
| CCTTTACCCTTTATAATTTG+TGG | - | chr3.1:90178734-90178753 | MS.gene014433:intron | 30.0% | |
| GAAGATCAAATAATAGTAGC+TGG | - | chr3.1:90179387-90179406 | MS.gene014433:CDS | 30.0% | |
| TGATATGGTTACAGATATTC+GGG | - | chr3.1:90178097-90178116 | MS.gene014433:intron | 30.0% | |
| TTTATAGTCATATATCTGGG+AGG | + | chr3.1:90178379-90178398 | None:intergenic | 30.0% | |
| ! | AGAATGGGATCACATTTTAT+GGG | + | chr3.1:90178922-90178941 | None:intergenic | 30.0% |
| ! | ATCTTTTCATAGAAGCTATC+AGG | + | chr3.1:90177679-90177698 | None:intergenic | 30.0% |
| ! | CAACTACAATTGATTGACTT+TGG | - | chr3.1:90179420-90179439 | MS.gene014433:CDS | 30.0% |
| ! | GTCAAAGCACTTATATATCT+AGG | - | chr3.1:90178789-90178808 | MS.gene014433:intron | 30.0% |
| !! | AATATCATGGCATTGAGTTT+TGG | - | chr3.1:90178256-90178275 | MS.gene014433:CDS | 30.0% |
| !! | AATATTTTAAGCGATTGTGC+TGG | - | chr3.1:90177973-90177992 | MS.gene014433:intron | 30.0% |
| !! | CTTCCTCTAAAATGAACAAA+CGG | + | chr3.1:90178343-90178362 | None:intergenic | 30.0% |
| !! | TTGAGTTGATCAATACAAAC+AGG | + | chr3.1:90177868-90177887 | None:intergenic | 30.0% |
| !!! | TGATTTTGGTGTTTTTCACA+GGG | - | chr3.1:90177492-90177511 | MS.gene014433:intron | 30.0% |
| !!! | TTGATTTTGGTGTTTTTCAC+AGG | - | chr3.1:90177491-90177510 | MS.gene014433:intron | 30.0% |
| AAAATGCGACAAGGTTTACA+TGG | - | chr3.1:90177213-90177232 | MS.gene014433:CDS | 35.0% | |
| AATCTCCAATAACTGCTCAA+TGG | + | chr3.1:90178407-90178426 | None:intergenic | 35.0% | |
| ACATTTGCTTACTTCCTCTT+TGG | - | chr3.1:90178826-90178845 | MS.gene014433:intron | 35.0% | |
| ATCCAACATTTCTTCCTCTA+AGG | + | chr3.1:90179487-90179506 | None:intergenic | 35.0% | |
| CATCTGTGATGAATGCAATT+GGG | - | chr3.1:90177584-90177603 | MS.gene014433:intron | 35.0% | |
| GGATACTACTTTCAGTTTGA+TGG | + | chr3.1:90179305-90179324 | None:intergenic | 35.0% | |
| GTTATTACTAGGCAATGCAA+AGG | + | chr3.1:90179450-90179469 | None:intergenic | 35.0% | |
| TCCAACATTTCTTCCTCTAA+GGG | + | chr3.1:90179486-90179505 | None:intergenic | 35.0% | |
| TCCAACCTCGAAAAACTATA+CGG | - | chr3.1:90177283-90177302 | MS.gene014433:CDS | 35.0% | |
| TGTAAAAGCGACATTGATAC+AGG | + | chr3.1:90177807-90177826 | None:intergenic | 35.0% | |
| TTGCATTGCCTAGTAATAAC+AGG | - | chr3.1:90179450-90179469 | MS.gene014433:CDS | 35.0% | |
| ! | ATACATAATCGGTTTAGGCT+TGG | - | chr3.1:90177147-90177166 | MS.gene014433:CDS | 35.0% |
| ! | GAGAATGGGATCACATTTTA+TGG | + | chr3.1:90178923-90178942 | None:intergenic | 35.0% |
| ! | TACATAATCGGTTTAGGCTT+GGG | - | chr3.1:90177148-90177167 | MS.gene014433:CDS | 35.0% |
| ! | TGTAAACCTTGTCGCATTTT+TGG | + | chr3.1:90177213-90177232 | None:intergenic | 35.0% |
| ! | TGTCCGTTTGTTCATTTTAG+AGG | - | chr3.1:90178337-90178356 | MS.gene014433:intron | 35.0% |
| !! | AAGTAGATAAGAGCGTTAGA+GGG | - | chr3.1:90177999-90178018 | MS.gene014433:intron | 35.0% |
| !! | TCATTAAGTATTGGTTGCTG+AGG | - | chr3.1:90178206-90178225 | MS.gene014433:intron | 35.0% |
| !!! | TTGTTGTTGGTGATCCTTTT+GGG | - | chr3.1:90177395-90177414 | MS.gene014433:intron | 35.0% |
| ACTTGAATCTTTGTGCAGGT+TGG | - | chr3.1:90178133-90178152 | MS.gene014433:intron | 40.0% | |
| AGCATGAGAAAGTTGAGCTT+GGG | + | chr3.1:90177368-90177387 | None:intergenic | 40.0% | |
| AGCTATCCAAAAATGCGACA+AGG | - | chr3.1:90177204-90177223 | MS.gene014433:CDS | 40.0% | |
| ATGAATGCAATTGGGATCTG+TGG | - | chr3.1:90177592-90177611 | MS.gene014433:intron | 40.0% | |
| CAAAAGGATCACCAACAACA+AGG | + | chr3.1:90177396-90177415 | None:intergenic | 40.0% | |
| CAATTCCCATCTTCTTAGCT+CGG | + | chr3.1:90177543-90177562 | None:intergenic | 40.0% | |
| CCAACACATTAGAGACTAGA+TGG | + | chr3.1:90178978-90178997 | None:intergenic | 40.0% | |
| CCATCTAGTCTCTAATGTGT+TGG | - | chr3.1:90178975-90178994 | MS.gene014433:CDS | 40.0% | |
| CTAGGCATGAGTTTCATATC+TGG | - | chr3.1:90178476-90178495 | MS.gene014433:intron | 40.0% | |
| CTGCACAAAGATTCAAGTGT+CGG | + | chr3.1:90178131-90178150 | None:intergenic | 40.0% | |
| CTTCACACACTTTGCTTGTT+AGG | - | chr3.1:90177721-90177740 | MS.gene014433:intron | 40.0% | |
| GAGCAAGATATCACACTCAA+AGG | - | chr3.1:90177175-90177194 | MS.gene014433:CDS | 40.0% | |
| GCATCTGTGATGAATGCAAT+TGG | - | chr3.1:90177583-90177602 | MS.gene014433:intron | 40.0% | |
| GGTTTGCAGCTATATCGTTA+TGG | - | chr3.1:90177613-90177632 | MS.gene014433:intron | 40.0% | |
| TACCTTTCTTTACTGAGACG+TGG | - | chr3.1:90177650-90177669 | MS.gene014433:intron | 40.0% | |
| TACTCTTGCTGACAGAGAAA+TGG | - | chr3.1:90177315-90177334 | MS.gene014433:intron | 40.0% | |
| TCCCTTAGAGGAAGAAATGT+TGG | - | chr3.1:90179482-90179501 | MS.gene014433:CDS | 40.0% | |
| TCTCTGTCAGCAAGAGTAAT+GGG | + | chr3.1:90177313-90177332 | None:intergenic | 40.0% | |
| TTCTCTGTCAGCAAGAGTAA+TGG | + | chr3.1:90177314-90177333 | None:intergenic | 40.0% | |
| TTGACCATTCACATCACTCT+AGG | - | chr3.1:90178458-90178477 | MS.gene014433:intron | 40.0% | |
| ! | ACATTTCTTCCTCTAAGGGA+TGG | + | chr3.1:90179482-90179501 | None:intergenic | 40.0% |
| ! | CACACTTTGCTTGTTAGGTT+AGG | - | chr3.1:90177726-90177745 | MS.gene014433:intron | 40.0% |
| ! | CATTTCTTCCTCTAAGGGAT+GGG | + | chr3.1:90179481-90179500 | None:intergenic | 40.0% |
| ! | GGTTACCGTATAGTTTTTCG+AGG | + | chr3.1:90177291-90177310 | None:intergenic | 40.0% |
| !! | AGTAGATAAGAGCGTTAGAG+GGG | - | chr3.1:90178000-90178019 | MS.gene014433:intron | 40.0% |
| !! | GAAGTAGATAAGAGCGTTAG+AGG | - | chr3.1:90177998-90178017 | MS.gene014433:intron | 40.0% |
| !! | GAGTAAGTTTCTGGCAAACA+AGG | + | chr3.1:90178566-90178585 | None:intergenic | 40.0% |
| !!! | ACCGTATAGTTTTTCGAGGT+TGG | + | chr3.1:90177287-90177306 | None:intergenic | 40.0% |
| !!! | ATAGTTTTTCGAGGTTGGAG+AGG | + | chr3.1:90177282-90177301 | None:intergenic | 40.0% |
| !!! | CTTGTTGTTGGTGATCCTTT+TGG | - | chr3.1:90177394-90177413 | MS.gene014433:intron | 40.0% |
| ACACTCGGTATCTTCTGTGT+AGG | + | chr3.1:90179343-90179362 | None:intergenic | 45.0% | |
| ACAGAAGATACCGAGTGTGT+TGG | - | chr3.1:90179345-90179364 | MS.gene014433:CDS | 45.0% | |
| CACAGCCATTGAGCAGTTAT+TGG | - | chr3.1:90178399-90178418 | MS.gene014433:intron | 45.0% | |
| CAGAAGATACCGAGTGTGTT+GGG | - | chr3.1:90179346-90179365 | MS.gene014433:CDS | 45.0% | |
| CAGCATGAGAAAGTTGAGCT+TGG | + | chr3.1:90177369-90177388 | None:intergenic | 45.0% | |
| CATGCCTAGAGTGATGTGAA+TGG | + | chr3.1:90178465-90178484 | None:intergenic | 45.0% | |
| CCAAACGAAAAGAGCCAAAG+AGG | + | chr3.1:90178843-90178862 | None:intergenic | 45.0% | |
| CGACACTTGAATCTTTGTGC+AGG | - | chr3.1:90178129-90178148 | MS.gene014433:intron | 45.0% | |
| CTCCACGTCTCAGTAAAGAA+AGG | + | chr3.1:90177655-90177674 | None:intergenic | 45.0% | |
| CTCTGTCAGCAAGAGTAATG+GGG | + | chr3.1:90177312-90177331 | None:intergenic | 45.0% | |
| GGGTCTTGCCTGTTATTACT+AGG | + | chr3.1:90179461-90179480 | None:intergenic | 45.0% | |
| GGTTACAGATATTCGGGTGA+AGG | - | chr3.1:90178103-90178122 | MS.gene014433:intron | 45.0% | |
| GTTGTCCGAGCTAAGAAGAT+GGG | - | chr3.1:90177535-90177554 | MS.gene014433:intron | 45.0% | |
| TACACTTCCCTTCTCTCCTT+CGG | - | chr3.1:90177241-90177260 | MS.gene014433:CDS | 45.0% | |
| TATCTTCTGTGTAGGCTGCA+AGG | + | chr3.1:90179335-90179354 | None:intergenic | 45.0% | |
| TCACAAGCACGTGAAGAATC+TGG | - | chr3.1:90178427-90178446 | MS.gene014433:intron | 45.0% | |
| TCTTCTTAGCTCGGACAACA+AGG | + | chr3.1:90177534-90177553 | None:intergenic | 45.0% | |
| TGTTGTCCGAGCTAAGAAGA+TGG | - | chr3.1:90177534-90177553 | MS.gene014433:intron | 45.0% | |
| ! | GCATCACGGTTCTTTGGAAA+GGG | - | chr3.1:90178022-90178041 | MS.gene014433:intron | 45.0% |
| ! | TATTGGTTGCTGAGGTTCTC+TGG | - | chr3.1:90178214-90178233 | MS.gene014433:intron | 45.0% |
| !! | CATGCTGCTTTCCTTGTTGT+TGG | - | chr3.1:90177382-90177401 | MS.gene014433:intron | 45.0% |
| !! | TTAGCTTGCAGTTGCTGTTC+TGG | - | chr3.1:90179181-90179200 | MS.gene014433:intron | 45.0% |
| !!! | CCTCTTTGGCTCTTTTCGTT+TGG | - | chr3.1:90178840-90178859 | MS.gene014433:intron | 45.0% |
| AGAGTAGGTGCGTACCCAAA+AGG | + | chr3.1:90177412-90177431 | None:intergenic | 50.0% | |
| ! | GGCATCACGGTTCTTTGGAA+AGG | - | chr3.1:90178021-90178040 | MS.gene014433:intron | 50.0% |
| AAGAGAGGCCGAAGGAGAGA+AGG | + | chr3.1:90177252-90177271 | None:intergenic | 55.0% | |
| ACGAGCAAGCCCAACACACT+CGG | + | chr3.1:90179358-90179377 | None:intergenic | 55.0% | |
| AGAGAGGCCGAAGGAGAGAA+GGG | + | chr3.1:90177251-90177270 | None:intergenic | 55.0% | |
| AGGCAAGACCCATCCCTTAG+AGG | - | chr3.1:90179470-90179489 | MS.gene014433:CDS | 55.0% | |
| TCCTTCGGCCTCTCTTCACA+CGG | - | chr3.1:90177256-90177275 | MS.gene014433:CDS | 55.0% | |
| TCTGTGTAGGCTGCAAGGCA+AGG | + | chr3.1:90179330-90179349 | None:intergenic | 55.0% | |
| TGTAGGCTGCAAGGCAAGGT+GGG | + | chr3.1:90179326-90179345 | None:intergenic | 55.0% | |
| ! | TGTGTTGGGCTTGCTCGTCT+GGG | - | chr3.1:90179360-90179379 | MS.gene014433:CDS | 55.0% |
| !! | AGAGCGTTAGAGGGGCATCA+CGG | - | chr3.1:90178008-90178027 | MS.gene014433:intron | 55.0% |
| !! | AGAGGGGCATCACGGTTCTT+TGG | - | chr3.1:90178016-90178035 | MS.gene014433:intron | 55.0% |
| GTGTAGGCTGCAAGGCAAGG+TGG | + | chr3.1:90179327-90179346 | None:intergenic | 60.0% | |
| TGGAGAGGCCGTGTGAAGAG+AGG | + | chr3.1:90177267-90177286 | None:intergenic | 60.0% | |
| ! | GTGTGTTGGGCTTGCTCGTC+TGG | - | chr3.1:90179359-90179378 | MS.gene014433:CDS | 60.0% |
| GCCGTGTGAAGAGAGGCCGA+AGG | + | chr3.1:90177260-90177279 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90177142 | 90179527 | 90177142 | ID=MS.gene014433 |
| chr3.1 | mRNA | 90177142 | 90179527 | 90177142 | ID=MS.gene014433.t1;Parent=MS.gene014433 |
| chr3.1 | exon | 90179253 | 90179527 | 90179253 | ID=MS.gene014433.t1.exon1;Parent=MS.gene014433.t1 |
| chr3.1 | CDS | 90179253 | 90179527 | 90179253 | ID=cds.MS.gene014433.t1;Parent=MS.gene014433.t1 |
| chr3.1 | exon | 90178927 | 90179156 | 90178927 | ID=MS.gene014433.t1.exon2;Parent=MS.gene014433.t1 |
| chr3.1 | CDS | 90178927 | 90179156 | 90178927 | ID=cds.MS.gene014433.t1;Parent=MS.gene014433.t1 |
| chr3.1 | exon | 90178519 | 90178558 | 90178519 | ID=MS.gene014433.t1.exon3;Parent=MS.gene014433.t1 |
| chr3.1 | CDS | 90178519 | 90178558 | 90178519 | ID=cds.MS.gene014433.t1;Parent=MS.gene014433.t1 |
| chr3.1 | exon | 90178221 | 90178312 | 90178221 | ID=MS.gene014433.t1.exon4;Parent=MS.gene014433.t1 |
| chr3.1 | CDS | 90178221 | 90178312 | 90178221 | ID=cds.MS.gene014433.t1;Parent=MS.gene014433.t1 |
| chr3.1 | exon | 90177142 | 90177329 | 90177142 | ID=MS.gene014433.t1.exon5;Parent=MS.gene014433.t1 |
| chr3.1 | CDS | 90177142 | 90177329 | 90177142 | ID=cds.MS.gene014433.t1;Parent=MS.gene014433.t1 |
| Gene Sequence |
| Protein sequence |
