AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56983

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56983.t1 MTR_5g072530 100.000 88 0 0 1 88 1 88 4.62e-60 177
MS.gene56983.t1 MTR_2g104440 100.000 88 0 0 1 88 1 88 4.62e-60 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56983.t1 AT4G30330 89.773 88 9 0 1 88 1 88 4.45e-55 165
MS.gene56983.t1 AT2G18740 89.773 88 9 0 1 88 1 88 5.93e-55 165
MS.gene56983.t1 AT2G18740 87.324 71 9 0 1 71 1 71 2.53e-42 133

Find 11 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGAGGATCCTTCTTAA+AGG 0.293334 5.1:+55696857 MS.gene56983:intron
CGAGTACATGAATTTGGTTT+TGG 0.342505 5.1:+55696710 MS.gene56983:CDS
AGAAAGCGCGGATTCAGATT+TGG 0.378565 5.1:+55693939 MS.gene56983:intron
CAGAAGGATTTGAGGATTGA+AGG 0.397492 5.1:+55693971 MS.gene56983:CDS
TTATGTTGTCTCCTTTAAGA+AGG 0.459912 5.1:-55696868 None:intergenic
GGTCATGACCCTCTGAACTT+TGG 0.461405 5.1:-55693706 None:intergenic
TGAGAAGCTTACAATGGGTT+GGG 0.503703 5.1:-55693727 None:intergenic
CTGAACTTTGGTGCTCGCCA+TGG 0.543294 5.1:-55693694 None:intergenic
ATGAGAAGCTTACAATGGGT+TGG 0.562440 5.1:-55693728 None:intergenic
GGCGAGCACCAAAGTTCAGA+GGG 0.604807 5.1:+55693698 MS.gene56983:CDS
TGGCGAGCACCAAAGTTCAG+AGG 0.636699 5.1:+55693697 MS.gene56983:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATTGTAAATACATTTAA+GGG - chr5.1:55694985-55695004 None:intergenic 15.0%
!!! ATCTTATTTTTGTTTTAAAC+AGG + chr5.1:55696680-55696699 MS.gene56983:intron 15.0%
!!! GTTTTTTTAATCTACTTAAT+TGG + chr5.1:55694892-55694911 MS.gene56983:intron 15.0%
!!! TCTTATTTTTGTTTTAAACA+GGG + chr5.1:55696681-55696700 MS.gene56983:intron 15.0%
!! AAATTAACAAACCAAAACAT+AGG - chr5.1:55696044-55696063 None:intergenic 20.0%
!! AATTTGGATATTTGAATAGA+TGG + chr5.1:55696643-55696662 MS.gene56983:intron 20.0%
!! ATTTGCAAATTTATTTATGC+CGG - chr5.1:55695816-55695835 None:intergenic 20.0%
!! GAGAAAAAGAAGAAAAAAAA+CGG - chr5.1:55693812-55693831 None:intergenic 20.0%
!! GATAGTTAATAGTTAATTTC+TGG + chr5.1:55696227-55696246 MS.gene56983:intron 20.0%
!! GGTTATTGTAAATACATTTA+AGG - chr5.1:55694986-55695005 None:intergenic 20.0%
!! GTTATTCTCAAATATTTCAT+AGG + chr5.1:55694914-55694933 MS.gene56983:intron 20.0%
!! TGTACTATCTAAATTTATCT+TGG + chr5.1:55696476-55696495 MS.gene56983:intron 20.0%
!!! AATTATGTACTCAGATTTTT+AGG + chr5.1:55694154-55694173 MS.gene56983:intron 20.0%
!!! ATTTGCTTTTACAAATTTCA+GGG + chr5.1:55696977-55696996 MS.gene56983:intron 20.0%
!!! CAAATATCCAAATTTTAATG+AGG - chr5.1:55696637-55696656 None:intergenic 20.0%
!!! TTTGTTGTATGTATTTTCAT+AGG + chr5.1:55694678-55694697 MS.gene56983:intron 20.0%
! AAAAAGAAGAAAAAAAACGG+AGG - chr5.1:55693809-55693828 None:intergenic 25.0%
! AAATATAATCAGTGTAGCTT+TGG + chr5.1:55695144-55695163 MS.gene56983:intron 25.0%
! AAATCAGAAAAACGAAACTT+TGG - chr5.1:55693899-55693918 None:intergenic 25.0%
! AAATCATTTCACTTACATTG+AGG - chr5.1:55696961-55696980 None:intergenic 25.0%
! AACCTTGTAATTTAATGACT+TGG + chr5.1:55695982-55696001 MS.gene56983:intron 25.0%
! AAGAAAAGTGAAATTGAAAG+AGG - chr5.1:55693764-55693783 None:intergenic 25.0%
! AAGAAACGTTTACCTAATTA+GGG - chr5.1:55695196-55695215 None:intergenic 25.0%
! AATATAATCAGTGTAGCTTT+GGG + chr5.1:55695145-55695164 MS.gene56983:intron 25.0%
! AATCAGAAAAACGAAACTTT+GGG - chr5.1:55693898-55693917 None:intergenic 25.0%
! AATCTGATAATTAACTCTAC+TGG - chr5.1:55695284-55695303 None:intergenic 25.0%
! ACAGGTTTATATAAAACTCT+TGG - chr5.1:55695311-55695330 None:intergenic 25.0%
! CGAGTTAATTCAATTACAAA+TGG + chr5.1:55695719-55695738 MS.gene56983:intron 25.0%
! GATATTTGAATAGATGGTTA+AGG + chr5.1:55696649-55696668 MS.gene56983:intron 25.0%
! TAAATTCAGTAGTACTTGTT+CGG - chr5.1:55694314-55694333 None:intergenic 25.0%
! TCTTTCAATTATGTTCTTCA+TGG + chr5.1:55694126-55694145 MS.gene56983:intron 25.0%
! TGTGTATCCTCATTAAAATT+TGG + chr5.1:55696627-55696646 MS.gene56983:intron 25.0%
! TTCACACTAAAAAGAAGAAA+GGG + chr5.1:55694542-55694561 MS.gene56983:intron 25.0%
! TTCCAAGTCATTAAATTACA+AGG - chr5.1:55695987-55696006 None:intergenic 25.0%
! TTGAAGTTAGTATTAAAGCT+AGG - chr5.1:55696318-55696337 None:intergenic 25.0%
! TTTCTATTGTGCATTCTTAT+AGG - chr5.1:55694465-55694484 None:intergenic 25.0%
! TTTGCAAATTTATTTATGCC+GGG - chr5.1:55695815-55695834 None:intergenic 25.0%
!! ACTTTTTGTATGACATGTTT+TGG + chr5.1:55695637-55695656 MS.gene56983:intron 25.0%
!! GAGATTCAAATTCAAAGTTT+TGG - chr5.1:55696517-55696536 None:intergenic 25.0%
!!! AAGAGTTTTATATAAACCTG+TGG + chr5.1:55695310-55695329 MS.gene56983:intron 25.0%
!!! ATTCAAAGTTTTGGATAACA+AGG - chr5.1:55696508-55696527 None:intergenic 25.0%
!!! GAGTGTTATTGTTTTGATTA+GGG + chr5.1:55696840-55696859 MS.gene56983:intron 25.0%
!!! GATTTGCTTTTACAAATTTC+AGG + chr5.1:55696976-55696995 MS.gene56983:intron 25.0%
!!! GTTTTGGTTTGTTAATTTGT+TGG + chr5.1:55696046-55696065 MS.gene56983:intron 25.0%
!!! TGAGTGTTATTGTTTTGATT+AGG + chr5.1:55696839-55696858 MS.gene56983:intron 25.0%
!!! TTTCAAGCTTTTTTTTTCAC+TGG + chr5.1:55694017-55694036 MS.gene56983:intron 25.0%
!!! TTTGCTTTTACAAATTTCAG+GGG + chr5.1:55696978-55696997 MS.gene56983:intron 25.0%
!!! TTTTGATTAGCTCATTTCTT+GGG + chr5.1:55696573-55696592 MS.gene56983:intron 25.0%
!!! TTTTTGATTAGCTCATTTCT+TGG + chr5.1:55696572-55696591 MS.gene56983:intron 25.0%
AACAGAAGGAAGAATTAAGA+AGG - chr5.1:55693870-55693889 None:intergenic 30.0%
AAGAAGAGCAAAAAGACATT+AGG + chr5.1:55696759-55696778 MS.gene56983:CDS 30.0%
AAGTTTCAACATTCACAAGT+TGG - chr5.1:55695903-55695922 None:intergenic 30.0%
AGAAACGTTTACCTAATTAG+GGG - chr5.1:55695195-55695214 None:intergenic 30.0%
AGTTACTAGAGAATGAAGAA+TGG - chr5.1:55695959-55695978 None:intergenic 30.0%
AGTTTCAACATTCACAAGTT+GGG - chr5.1:55695902-55695921 None:intergenic 30.0%
ATCAGAAAAACGAAACTTTG+GGG - chr5.1:55693897-55693916 None:intergenic 30.0%
CAAGAAACGTTTACCTAATT+AGG - chr5.1:55695197-55695216 None:intergenic 30.0%
CAGGAAAAGTTTAATACTTC+TGG - chr5.1:55694748-55694767 None:intergenic 30.0%
GTTCACACTAAAAAGAAGAA+AGG + chr5.1:55694541-55694560 MS.gene56983:intron 30.0%
TCACACTAAAAAGAAGAAAG+GGG + chr5.1:55694543-55694562 MS.gene56983:intron 30.0%
TGAATCTAGCTAAGTTTACA+TGG - chr5.1:55695748-55695767 None:intergenic 30.0%
TTCTGCTATTAGATGTTTCT+AGG + chr5.1:55695563-55695582 MS.gene56983:intron 30.0%
! GTTGTATGTATTTTCATAGG+TGG + chr5.1:55694681-55694700 MS.gene56983:intron 30.0%
! TGTGAACTCGTAATTTTTAC+TGG + chr5.1:55694867-55694886 MS.gene56983:intron 30.0%
! TTAGTCACTGTTTGATGTTT+TGG + chr5.1:55694240-55694259 MS.gene56983:intron 30.0%
! TTATGTTGTCTCCTTTAAGA+AGG - chr5.1:55696871-55696890 None:intergenic 30.0%
! TTGCTTCACTAAGTTGAATT+CGG + chr5.1:55695922-55695941 MS.gene56983:intron 30.0%
! TTTGATTAGCTCATTTCTTG+GGG + chr5.1:55696574-55696593 MS.gene56983:intron 30.0%
! TTTTGACGAGTACATGAATT+TGG + chr5.1:55696704-55696723 MS.gene56983:CDS 30.0%
!! AAGTTTTATCCCACTAAGTA+GGG - chr5.1:55694412-55694431 None:intergenic 30.0%
!! ATTTGTCTTATTTGTGGATG+TGG + chr5.1:55696192-55696211 MS.gene56983:intron 30.0%
!! TAAGTTTTATCCCACTAAGT+AGG - chr5.1:55694413-55694432 None:intergenic 30.0%
!! TCAGATTTTTAGGAAAGCTA+TGG + chr5.1:55694164-55694183 MS.gene56983:intron 30.0%
!! TTTAATTTTTGCAGAAAGCG+CGG + chr5.1:55693927-55693946 MS.gene56983:intron 30.0%
!!! ACTTAGGATTGGTTTGTTTT+TGG + chr5.1:55696164-55696183 MS.gene56983:intron 30.0%
!!! CTTAGGATTGGTTTGTTTTT+GGG + chr5.1:55696165-55696184 MS.gene56983:intron 30.0%
!!! TAAGTTCTGAACCTATGTTT+TGG + chr5.1:55696030-55696049 MS.gene56983:intron 30.0%
!!! TGTATGACATGTTTTGGAAT+AGG + chr5.1:55695643-55695662 MS.gene56983:intron 30.0%
!!! TGTTATTGTTTTGATTAGGG+AGG + chr5.1:55696843-55696862 MS.gene56983:intron 30.0%
!!! TTAGGATTGGTTTGTTTTTG+GGG + chr5.1:55696166-55696185 MS.gene56983:intron 30.0%
AATCCTAAGTAAATGAGCTG+AGG - chr5.1:55696154-55696173 None:intergenic 35.0%
ACTAGAGAATGAAGAATGGT+TGG - chr5.1:55695955-55695974 None:intergenic 35.0%
AGATGAAAGAACTGCATTTG+TGG + chr5.1:55695424-55695443 MS.gene56983:intron 35.0%
ATGTCATGGTAGACTTTCAT+AGG + chr5.1:55694836-55694855 MS.gene56983:intron 35.0%
ATTAAGTCATCAACCACTGT+AGG + chr5.1:55696268-55696287 MS.gene56983:intron 35.0%
ATTGGTAGACCAAATTGTCA+CGG + chr5.1:55694499-55694518 MS.gene56983:intron 35.0%
CTCATCAGAAAATGCTTAAG+TGG - chr5.1:55696823-55696842 None:intergenic 35.0%
GAAGAAAAAAAACGGAGGTT+AGG - chr5.1:55693804-55693823 None:intergenic 35.0%
GAGTTGTAAGCAGTTCAAAA+GGG + chr5.1:55695376-55695395 MS.gene56983:intron 35.0%
GATCAAAGAGTTGTAAGTTG+TGG - chr5.1:55695459-55695478 None:intergenic 35.0%
TAGGCGCATCATAAAGATTA+TGG - chr5.1:55694276-55694295 None:intergenic 35.0%
TCAGCTCATTTACTTAGGAT+TGG + chr5.1:55696153-55696172 MS.gene56983:intron 35.0%
TCATACTCCTATAACCAACT+CGG - chr5.1:55694585-55694604 None:intergenic 35.0%
TCGGAAGCCAAATTGAAATT+AGG - chr5.1:55694295-55694314 None:intergenic 35.0%
TGACAATTTGGTCTACCAAT+TGG - chr5.1:55694499-55694518 None:intergenic 35.0%
TGATGCGCCTAATTTCAATT+TGG + chr5.1:55694285-55694304 MS.gene56983:intron 35.0%
TGTCTCATCTCTTCTTTAAG+AGG - chr5.1:55696389-55696408 None:intergenic 35.0%
TGTGATGAGAAGCTTACAAT+GGG - chr5.1:55693735-55693754 None:intergenic 35.0%
TTAAGTCATCAACCACTGTA+GGG + chr5.1:55696269-55696288 MS.gene56983:intron 35.0%
! GTCTCATCTCTTCTTTAAGA+GGG - chr5.1:55696388-55696407 None:intergenic 35.0%
! GTTAATTTCTGGAGATGATC+TGG + chr5.1:55696238-55696257 MS.gene56983:intron 35.0%
! TCTCATCTCTTCTTTAAGAG+GGG - chr5.1:55696387-55696406 None:intergenic 35.0%
! TCTTATTTGTGGATGTGGAA+GGG + chr5.1:55696197-55696216 MS.gene56983:intron 35.0%
! TGGTTATAGGAGTATGAGTA+GGG + chr5.1:55694588-55694607 MS.gene56983:intron 35.0%
! TTGATTAGCTCATTTCTTGG+GGG + chr5.1:55696575-55696594 MS.gene56983:intron 35.0%
! TTGGTTATAGGAGTATGAGT+AGG + chr5.1:55694587-55694606 MS.gene56983:intron 35.0%
!! CGAGTACATGAATTTGGTTT+TGG + chr5.1:55696710-55696729 MS.gene56983:CDS 35.0%
!! GAGCTCTAGACAATCAAAAT+TGG - chr5.1:55695494-55695513 None:intergenic 35.0%
!! GGGTTCATTTGTCTTATTTG+TGG + chr5.1:55696186-55696205 MS.gene56983:intron 35.0%
!! TTTTTGAGCAGAAGGATTTG+AGG + chr5.1:55693963-55693982 MS.gene56983:CDS 35.0%
!!! AGTTTTGGATAACAAGGATG+TGG - chr5.1:55696502-55696521 None:intergenic 35.0%
AACGTTTACCTAATTAGGGG+TGG - chr5.1:55695192-55695211 None:intergenic 40.0%
ACAGCTAAAAGTAACACCAC+AGG - chr5.1:55695329-55695348 None:intergenic 40.0%
AGAATGAAGAATGGTTGGAC+TGG - chr5.1:55695950-55695969 None:intergenic 40.0%
ATCAAATCGACAAGCTCCAT+AGG - chr5.1:55694818-55694837 None:intergenic 40.0%
ATGAGAAGCTTACAATGGGT+TGG - chr5.1:55693731-55693750 None:intergenic 40.0%
ATTTCTTGGGGGATAATGCT+TGG + chr5.1:55696586-55696605 MS.gene56983:intron 40.0%
CAAATGAATCCCCACAGAAA+AGG - chr5.1:55694713-55694732 None:intergenic 40.0%
CAGAAGGATTTGAGGATTGA+AGG + chr5.1:55693971-55693990 MS.gene56983:CDS 40.0%
CTAAGTAAATGAGCTGAGGT+GGG - chr5.1:55696150-55696169 None:intergenic 40.0%
GAAAACCTGATTGTGACCTA+TGG + chr5.1:55694799-55694818 MS.gene56983:intron 40.0%
GAAAGTTGCAACAGTCCAAT+TGG + chr5.1:55694481-55694500 MS.gene56983:intron 40.0%
GAACTGATCATAGAAAGAGC+AGG - chr5.1:55694767-55694786 None:intergenic 40.0%
GAAGACGATTGATGTATGAG+AGG - chr5.1:55695060-55695079 None:intergenic 40.0%
GAATTCTGATGCTGTGTTTG+TGG + chr5.1:55696077-55696096 MS.gene56983:intron 40.0%
GAGAAACTACAGCACCAATA+AGG - chr5.1:55695090-55695109 None:intergenic 40.0%
GATCTAGTGCTTATAACCCA+TGG + chr5.1:55695233-55695252 MS.gene56983:intron 40.0%
GGAGTTGTAAGCAGTTCAAA+AGG + chr5.1:55695375-55695394 MS.gene56983:intron 40.0%
GTGTGATGAGAAGCTTACAA+TGG - chr5.1:55693736-55693755 None:intergenic 40.0%
TACATCAATCGTCTTCCTAG+TGG + chr5.1:55695064-55695083 MS.gene56983:intron 40.0%
TAGCTAGATTCACGAGTTTG+AGG + chr5.1:55695756-55695775 MS.gene56983:intron 40.0%
TCATGTGACTCAACAACTCT+AGG + chr5.1:55695687-55695706 MS.gene56983:intron 40.0%
TCGGATCATTGGGTGTAATT+AGG + chr5.1:55694615-55694634 MS.gene56983:intron 40.0%
TGAACAAGTCCATTATTGCG+AGG + chr5.1:55695845-55695864 MS.gene56983:intron 40.0%
TGATCAGTTCTATTCTGCCA+TGG + chr5.1:55694777-55694796 MS.gene56983:intron 40.0%
TTAGGGAGGATCCTTCTTAA+AGG + chr5.1:55696857-55696876 MS.gene56983:intron 40.0%
TTATTTATGCCGGGAGCAAT+GGG - chr5.1:55695806-55695825 None:intergenic 40.0%
TTGGTAGACCAAATTGTCAC+GGG + chr5.1:55694500-55694519 MS.gene56983:intron 40.0%
TTTATTTATGCCGGGAGCAA+TGG - chr5.1:55695807-55695826 None:intergenic 40.0%
! ACGACATACTGTTTCTCACA+AGG + chr5.1:55694957-55694976 MS.gene56983:intron 40.0%
! AGCATAGAGCTTTTGCTTGT+CGG - chr5.1:55695613-55695632 None:intergenic 40.0%
! ATTAGCCAAGTTAGCCTGTT+AGG - chr5.1:55695876-55695895 None:intergenic 40.0%
! GGTTATAGGAGTATGAGTAG+GGG + chr5.1:55694589-55694608 MS.gene56983:intron 40.0%
! TGAGAAGCTTACAATGGGTT+GGG - chr5.1:55693730-55693749 None:intergenic 40.0%
!! AAACTCTCGGCTATTTTCCA+TGG - chr5.1:55695253-55695272 None:intergenic 40.0%
!! AACTCTCGGCTATTTTCCAT+GGG - chr5.1:55695252-55695271 None:intergenic 40.0%
!! ACTGGCTTGTGTAAAACTCT+CGG - chr5.1:55695266-55695285 None:intergenic 40.0%
!! AGCTTGTCGATTTGATGTCA+TGG + chr5.1:55694822-55694841 MS.gene56983:intron 40.0%
!! GTCTTATTTGTGGATGTGGA+AGG + chr5.1:55696196-55696215 MS.gene56983:intron 40.0%
!!! GATTTGGCTTTTTGAGCAGA+AGG + chr5.1:55693955-55693974 MS.gene56983:CDS 40.0%
!!! TGGTGCTGTAGTTTCTCTTT+TGG + chr5.1:55695093-55695112 MS.gene56983:intron 40.0%
AAGCTCCATAGGTCACAATC+AGG - chr5.1:55694807-55694826 None:intergenic 45.0%
ACGATTGATGTATGAGAGGC+AGG - chr5.1:55695056-55695075 None:intergenic 45.0%
AGCACAAACCCGTGACAATT+TGG - chr5.1:55694511-55694530 None:intergenic 45.0%
AGCTGATGGGAATCAACTTC+TGG - chr5.1:55695007-55695026 None:intergenic 45.0%
AGGCAGGGATAAAAGCAAAG+TGG - chr5.1:55695040-55695059 None:intergenic 45.0%
AGGGATAAAAGCAAAGTGGC+TGG - chr5.1:55695036-55695055 None:intergenic 45.0%
AGTTCAAAAGGGACAGCTGA+TGG + chr5.1:55695387-55695406 MS.gene56983:intron 45.0%
ATGTAGCAGACCCTACTTAG+TGG + chr5.1:55694399-55694418 MS.gene56983:intron 45.0%
CCACCTCAGCTCATTTACTT+AGG + chr5.1:55696148-55696167 MS.gene56983:intron 45.0%
CCTAAGTAAATGAGCTGAGG+TGG - chr5.1:55696151-55696170 None:intergenic 45.0%
CGATTGATGTATGAGAGGCA+GGG - chr5.1:55695055-55695074 None:intergenic 45.0%
CTAGATTCACGAGTTTGAGG+AGG + chr5.1:55695759-55695778 MS.gene56983:intron 45.0%
CTTCACTTCCACCCCTAATT+AGG + chr5.1:55695181-55695200 MS.gene56983:intron 45.0%
GCTTACAACTCCACAGGTTT+GGG - chr5.1:55695367-55695386 None:intergenic 45.0%
GTTTGAGGAGGTGAATGTGT+TGG + chr5.1:55695771-55695790 MS.gene56983:intron 45.0%
TAGGTGCAACCTCGCAATAA+TGG - chr5.1:55695857-55695876 None:intergenic 45.0%
TATTTATGCCGGGAGCAATG+GGG - chr5.1:55695805-55695824 None:intergenic 45.0%
TGAACTGCTTACAACTCCAC+AGG - chr5.1:55695373-55695392 None:intergenic 45.0%
TGCTTACAACTCCACAGGTT+TGG - chr5.1:55695368-55695387 None:intergenic 45.0%
TGTAGCAGACCCTACTTAGT+GGG + chr5.1:55694400-55694419 MS.gene56983:intron 45.0%
TTGATGTTTGCCCAAACCTG+TGG + chr5.1:55695354-55695373 MS.gene56983:intron 45.0%
TTGCACCTAACAGGCTAACT+TGG + chr5.1:55695868-55695887 MS.gene56983:intron 45.0%
! AGAAAGCGCGGATTCAGATT+TGG + chr5.1:55693939-55693958 MS.gene56983:intron 45.0%
! GCATAGAGCTTTTGCTTGTC+GGG - chr5.1:55695612-55695631 None:intergenic 45.0%
! GGTCACAATCAGGTTTTCCA+TGG - chr5.1:55694797-55694816 None:intergenic 45.0%
! GTGGTAGTCTCCTTTTCTGT+GGG + chr5.1:55694700-55694719 MS.gene56983:intron 45.0%
! TGGTAGTCTCCTTTTCTGTG+GGG + chr5.1:55694701-55694720 MS.gene56983:intron 45.0%
!! AACTTTGGGGCAAGAACAGA+AGG - chr5.1:55693884-55693903 None:intergenic 45.0%
!! GAGTTAGCCGAGTTGGTTAT+AGG + chr5.1:55694575-55694594 MS.gene56983:intron 45.0%
!! TTTTTAGTGTGAACCCCTCG+AGG - chr5.1:55694535-55694554 None:intergenic 45.0%
ACAATTCTGCCTCCCTACAG+TGG - chr5.1:55696284-55696303 None:intergenic 50.0%
ACAGCACCAATAAGGCCACT+AGG - chr5.1:55695082-55695101 None:intergenic 50.0%
AGTAGGGGAGATCGGATCAT+TGG + chr5.1:55694604-55694623 MS.gene56983:intron 50.0%
AGTCATCAACCACTGTAGGG+AGG + chr5.1:55696272-55696291 MS.gene56983:intron 50.0%
ATTGCGAGGTTGCACCTAAC+AGG + chr5.1:55695859-55695878 MS.gene56983:intron 50.0%
CATGACAGAGTTAGCCGAGT+TGG + chr5.1:55694568-55694587 MS.gene56983:intron 50.0%
GGAGTATGAGTAGGGGAGAT+CGG + chr5.1:55694596-55694615 MS.gene56983:intron 50.0%
GGTCATGACCCTCTGAACTT+TGG - chr5.1:55693709-55693728 None:intergenic 50.0%
GTAGGGGAGATCGGATCATT+GGG + chr5.1:55694605-55694624 MS.gene56983:intron 50.0%
GTGGATTCTCTGCTTGAGTC+TGG + chr5.1:55696096-55696115 MS.gene56983:intron 50.0%
TGGCTGGTAGTACAGCTGAT+GGG - chr5.1:55695020-55695039 None:intergenic 50.0%
TTCTCTGCTTGAGTCTGGTC+TGG + chr5.1:55696101-55696120 MS.gene56983:intron 50.0%
! GGTGGTAGTCTCCTTTTCTG+TGG + chr5.1:55694699-55694718 MS.gene56983:intron 50.0%
!! CGTCTTCCTAGTGGCCTTAT+TGG + chr5.1:55695073-55695092 MS.gene56983:intron 50.0%
AGTCTCAACCCCATTGCTCC+CGG + chr5.1:55695794-55695813 MS.gene56983:intron 55.0%
AGTCTGGTCTGGTTGGACCA+GGG + chr5.1:55696112-55696131 MS.gene56983:intron 55.0%
CTGCTTGAGTCTGGTCTGGT+TGG + chr5.1:55696105-55696124 MS.gene56983:intron 55.0%
GGCGAGCACCAAAGTTCAGA+GGG + chr5.1:55693698-55693717 MS.gene56983:CDS 55.0%
GTGGCTGGTAGTACAGCTGA+TGG - chr5.1:55695021-55695040 None:intergenic 55.0%
TGGCGAGCACCAAAGTTCAG+AGG + chr5.1:55693697-55693716 MS.gene56983:CDS 55.0%
ACGGGTTTGTGCTGCCTCGA+GGG + chr5.1:55694518-55694537 MS.gene56983:intron 60.0%
GAGTCTGGTCTGGTTGGACC+AGG + chr5.1:55696111-55696130 MS.gene56983:intron 60.0%
CACGGGTTTGTGCTGCCTCG+AGG + chr5.1:55694517-55694536 MS.gene56983:intron 65.0%
CGGGTTTGTGCTGCCTCGAG+GGG + chr5.1:55694519-55694538 MS.gene56983:intron 65.0%
CTGGTTGGACCAGGGCAGTG+AGG + chr5.1:55696120-55696139 MS.gene56983:intron 65.0%
GTGGGCAGACCTCACTGCCC+TGG - chr5.1:55696132-55696151 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 55693696 55697007 55693696 ID=MS.gene56983
chr5.1 mRNA 55693696 55697007 55693696 ID=MS.gene56983.t1;Parent=MS.gene56983
chr5.1 exon 55693696 55693737 55693696 ID=MS.gene56983.t1.exon1;Parent=MS.gene56983.t1
chr5.1 CDS 55693696 55693737 55693696 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
chr5.1 exon 55693834 55693860 55693834 ID=MS.gene56983.t1.exon2;Parent=MS.gene56983.t1
chr5.1 CDS 55693834 55693860 55693834 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
chr5.1 exon 55693941 55694003 55693941 ID=MS.gene56983.t1.exon3;Parent=MS.gene56983.t1
chr5.1 CDS 55693941 55694003 55693941 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
chr5.1 exon 55696702 55696780 55696702 ID=MS.gene56983.t1.exon4;Parent=MS.gene56983.t1
chr5.1 CDS 55696702 55696780 55696702 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
chr5.1 exon 55696861 55696906 55696861 ID=MS.gene56983.t1.exon5;Parent=MS.gene56983.t1
chr5.1 CDS 55696861 55696906 55696861 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
chr5.1 exon 55696998 55697007 55696998 ID=MS.gene56983.t1.exon6;Parent=MS.gene56983.t1
chr5.1 CDS 55696998 55697007 55696998 ID=cds.MS.gene56983.t1;Parent=MS.gene56983.t1
Gene Sequence

>MS.gene56983

ATGGCGAGCACCAAAGTTCAGAGGGTCATGACCCAACCCATTGTAAGCTTCTCATCACACTCTTACCTCTTTCAATTTCACTTTTCTTTCTCTTTAACAACTTAACCTAACCTCCGTTTTTTTTCTTCTTTTTCTCAGAACTTGATCTTCAGATTTCTTCAAAGCGTAAGTCCTTCTTAATTCTTCCTTCTGTTCTTGCCCCAAAGTTTCGTTTTTCTGATTTTATTTTATTTTAATTTTTGCAGAAAGCGCGGATTCAGATTTGGCTTTTTGAGCAGAAGGATTTGAGGATTGAAGGAAGAATCATTGTAAGTTTATTTTTTTCAAGCTTTTTTTTTCACTGGTAATTATCAAATCAATTTTAAAATGTTGTGAAAAATTGAAAAAAAAAAGCAGCTTTTTTTAATTGAGATTTTGTTGCTGTGAATTTTCTTTCAATTATGTTCTTCATGGTGTAGAATTATGTACTCAGATTTTTAGGAAAGCTATGGTTTTGCTGTGCAATAATCTATTTGTTTATTTTATGTTGCTGAACAATTGCACATTAGTCACTGTTTGATGTTTTGGTAAATATCTACCATAATCTTTATGATGCGCCTAATTTCAATTTGGCTTCCGAACAAGTACTACTGAATTTAAGATTATTGTTATGTTTTAAGAAACATATACATAAAATCGATGACATTATGATGTCGTTTGATTGATGTAGCAGACCCTACTTAGTGGGATAAAACTTAGCTGCTGTTGTTGTATACATAAGATAAAACCTATAAGAATGCACAATAGAAAGTTGCAACAGTCCAATTGGTAGACCAAATTGTCACGGGTTTGTGCTGCCTCGAGGGGTTCACACTAAAAAGAAGAAAGGGGCACATGACAGAGTTAGCCGAGTTGGTTATAGGAGTATGAGTAGGGGAGATCGGATCATTGGGTGTAATTAGGATTATTTTTTCTTGCATTTTCTTTCAGTTTCATGCATGTATTTGTTGTATGTATTTTCATAGGTGGTAGTCTCCTTTTCTGTGGGGATTCATTTGTTTTCATAAATGCCAGAAGTATTAAACTTTTCCTGCTCTTTCTATGATCAGTTCTATTCTGCCATGGAAAACCTGATTGTGACCTATGGAGCTTGTCGATTTGATGTCATGGTAGACTTTCATAGGTGTAGAGTTGTGAACTCGTAATTTTTACTGGTAGTTTTTTTAATCTACTTAATTGGTTATTCTCAAATATTTCATAGGCTTTTCATTCAAATTTAGACACGACATACTGTTTCTCACAAGGTTCCCTTAAATGTATTTACAATAACCAGAAGTTGATTCCCATCAGCTGTACTACCAGCCACTTTGCTTTTATCCCTGCCTCTCATACATCAATCGTCTTCCTAGTGGCCTTATTGGTGCTGTAGTTTCTCTTTTGGATTAGCTCAATATATATTATATAAAATAAAATATAATCAGTGTAGCTTTGGGTGTATCTGTGACTCTTCACTTCCACCCCTAATTAGGTAAACGTTTCTTGATAGTTGACTATACATGATCTAGTGCTTATAACCCATGGAAAATAGCCGAGAGTTTTACACAAGCCAGTAGAGTTAATTATCAGATTTTAGCCAAGAGTTTTATATAAACCTGTGGTGTTACTTTTAGCTGTGCATTTTGATGTTTGCCCAAACCTGTGGAGTTGTAAGCAGTTCAAAAGGGACAGCTGATGGAAGTGCAGAAAAATAGATGAAAGAACTGCATTTGTGGAGTTATTTTCCACAACTTACAACTCTTTGATCATTGCTTTTTTTCCAATTTTGATTGTCTAGAGCTCATGTGATGTTTAGTGCTGTTGTGTAGCTGAATCTTCACAAACTGCTATTTTCTGCTATTAGATGTTTCTAGGAACAGATAGATTAGAAATCTGTACCCGACAAGCAAAAGCTCTATGCTTACAACTTTTTGTATGACATGTTTTGGAATAGGATGTTGTTTGTTAACTCATAATCATGTGACTCAACAACTCTAGGAATCAAAATCGAGTTAATTCAATTACAAATGGTTTCCATGTAAACTTAGCTAGATTCACGAGTTTGAGGAGGTGAATGTGTTGGAGTCTCAACCCCATTGCTCCCGGCATAAATAAATTTGCAAATTAGAATACATGAACAAGTCCATTATTGCGAGGTTGCACCTAACAGGCTAACTTGGCTAATGAACCCAACTTGTGAATGTTGAAACTTTGCTTCACTAAGTTGAATTCGGAACCAGTCCAACCATTCTTCATTCTCTAGTAACTTTGAACCTTGTAATTTAATGACTTGGAACTTTCTGCGTTCTTGTTGTGTGCTAAGTTCTGAACCTATGTTTTGGTTTGTTAATTTGTTGGTTAAATTTGAATTCTGATGCTGTGTTTGTGGATTCTCTGCTTGAGTCTGGTCTGGTTGGACCAGGGCAGTGAGGTCTGCCCACCTCAGCTCATTTACTTAGGATTGGTTTGTTTTTGGGGTTCATTTGTCTTATTTGTGGATGTGGAAGGGATTACTTGATAGTTAATAGTTAATTTCTGGAGATGATCTGGAATTAGCATTAAGTCATCAACCACTGTAGGGAGGCAGAATTGTTTCTATTTCTGCCTAGCTTTAATACTAACTTCAATTAAAATTTGTATTTCAAACTGATCTAGAAAATTAAAATACAAAATCCCCTCTTAAAGAAGAGATGAGACATGAATTTGTTGTAGTTATTCATTTATCAGCATCTCTAAGAAATGTGATATTACACTTGTCACTACTTTGTACTATCTAAATTTATCTTGGCCACATCCTTGTTATCCAAAACTTTGAATTTGAATCTCATCTGTCTCTTTCAACAGTTTAGTACTTTATAAACTTTTTGATTAGCTCATTTCTTGGGGGATAATGCTTGGTTATTGTTTTTGTTAGAGTGTGTATCCTCATTAAAATTTGGATATTTGAATAGATGGTTAAGGATCTTGTGATCTTATTTTTGTTTTAAACAGGGTTTTGACGAGTACATGAATTTGGTTTTGGATGATGCTGAAGAAGTAAACGTCAAGAAGAAGAGCAAAAAGACATTAGGTAATACAAGTTTCTCAAATTTGATTCTATTTCTCTTTGCCACTTAAGCATTTTCTGATGAGTGTTATTGTTTTGATTAGGGAGGATCCTTCTTAAAGGAGACAACATAACTTTGATGATGAACACGTAAGTGAAATTAAATTCACATTTTCATCTATTTCTCTATTGTTTTCTTCTCCTCAATGTAAGTGAAATGATTTGCTTTTACAAATTTCAGGGGTAAATGA
Protein sequence

>MS.gene56983.t1

MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTGK