AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50211

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50211.t1 MTR_5g072530 100.000 88 0 0 1 88 1 88 4.62e-60 177
MS.gene50211.t1 MTR_2g104440 100.000 88 0 0 1 88 1 88 4.62e-60 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50211.t1 AT4G30330 89.773 88 9 0 1 88 1 88 4.45e-55 165
MS.gene50211.t1 AT2G18740 89.773 88 9 0 1 88 1 88 5.93e-55 165
MS.gene50211.t1 AT2G18740 87.324 71 9 0 1 71 1 71 2.53e-42 133

Find 11 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGAGGATCCTTCTTAA+AGG 0.293334 5.2:+60838108 MS.gene50211:intron
AGAAAGCGCGGATTCAGATT+TGG 0.378565 5.2:+60835106 MS.gene50211:intron
CGAGTACATGAATTTGGTAT+TGG 0.384393 5.2:+60837961 MS.gene50211:CDS
CAGAAGGATTTGAGGATTGA+AGG 0.397492 5.2:+60835138 MS.gene50211:CDS
TTATGTTGTCTCCTTTAAGA+AGG 0.459912 5.2:-60838119 None:intergenic
GGTCATAACCCTCTGAACTT+TGG 0.464330 5.2:-60834865 None:intergenic
TGAGAAGCTTACAATGGGTT+GGG 0.503703 5.2:-60834886 None:intergenic
CTGAACTTTGGTGCTCGCCA+TGG 0.543294 5.2:-60834853 None:intergenic
ATGAGAAGCTTACAATGGGT+TGG 0.562440 5.2:-60834887 None:intergenic
GGCGAGCACCAAAGTTCAGA+GGG 0.609545 5.2:+60834857 MS.gene50211:CDS
TGGCGAGCACCAAAGTTCAG+AGG 0.636699 5.2:+60834856 MS.gene50211:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTGTAATTTAATGATT+TGG + chr5.2:60837293-60837312 MS.gene50211:intron 15.0%
!! ACACTAAAAAAAAAAAGAAA+GGG + chr5.2:60835654-60835673 MS.gene50211:intron 15.0%
!! ATTTAAATTATTGTTGCTAT+TGG + chr5.2:60835502-60835521 MS.gene50211:intron 15.0%
!! GTTATTGTAAATACATTTAA+GGG - chr5.2:60836094-60836113 None:intergenic 15.0%
!! TACACTAAAAAAAAAAAGAA+AGG + chr5.2:60835653-60835672 MS.gene50211:intron 15.0%
!! AAAGAAAAGTGAAATTGAAA+GGG - chr5.2:60834924-60834943 None:intergenic 20.0%
!! ATTTGCAAATTTATTTATGC+TGG - chr5.2:60837136-60837155 None:intergenic 20.0%
!! CACTAAAAAAAAAAAGAAAG+GGG + chr5.2:60835655-60835674 MS.gene50211:intron 20.0%
!! GAAAAAGAAGAAAAAAAACA+CGG - chr5.2:60834971-60834990 None:intergenic 20.0%
!! GGTTATTGTAAATACATTTA+AGG - chr5.2:60836095-60836114 None:intergenic 20.0%
!! GTTATTCTCAAATATTTCAT+AGG + chr5.2:60836023-60836042 MS.gene50211:intron 20.0%
!! TTTGCAAATTTATTTATGCT+GGG - chr5.2:60837135-60837154 None:intergenic 20.0%
!!! AGTTTTTTAATCCACTTAAT+TGG + chr5.2:60836001-60836020 MS.gene50211:intron 20.0%
!!! ATCTTATTTTTGTTTTGAAC+AGG + chr5.2:60837931-60837950 MS.gene50211:intron 20.0%
!!! ATTACTTGATAGTTAATTTC+TGG + chr5.2:60837479-60837498 MS.gene50211:intron 20.0%
!!! ATTTGCTTTTACAAATTTCA+GGG + chr5.2:60838228-60838247 MS.gene50211:intron 20.0%
!!! CTTGCTTTTTTTTTTTTACA+CGG + chr5.2:60835191-60835210 MS.gene50211:intron 20.0%
!!! TCTTATTTTTGTTTTGAACA+GGG + chr5.2:60837932-60837951 MS.gene50211:intron 20.0%
!!! TTGCTTTTTTTTTTTTACAC+GGG + chr5.2:60835192-60835211 MS.gene50211:intron 20.0%
! AAATCAGAAAAACGAAACTT+TGG - chr5.2:60835060-60835079 None:intergenic 25.0%
! AAATCATTTCACTTACATTG+TGG - chr5.2:60838212-60838231 None:intergenic 25.0%
! AAATGACATCATAATGTGAT+TGG - chr5.2:60835562-60835581 None:intergenic 25.0%
! AAGAAAAGTGAAATTGAAAG+GGG - chr5.2:60834923-60834942 None:intergenic 25.0%
! AAGAAACGTTTACCTAATTA+GGG - chr5.2:60836305-60836324 None:intergenic 25.0%
! AATCAGAAAAACGAAACTTT+GGG - chr5.2:60835059-60835078 None:intergenic 25.0%
! ACAGGATTATATAAAACTCT+TGG - chr5.2:60836425-60836444 None:intergenic 25.0%
! ATTATATAAAACTCTTGGCT+TGG - chr5.2:60836420-60836439 None:intergenic 25.0%
! ATTTACCAAAACTTCAAACA+GGG - chr5.2:60835422-60835441 None:intergenic 25.0%
! CAAACATGTCTACAAAATAA+TGG + chr5.2:60836900-60836919 MS.gene50211:intron 25.0%
! CAAATATCCAAATTCTAATG+AGG - chr5.2:60837887-60837906 None:intergenic 25.0%
! CGAGTTAATTCAATTACAAA+CGG + chr5.2:60836835-60836854 MS.gene50211:intron 25.0%
! GAAAGAAAAGTGAAATTGAA+AGG - chr5.2:60834925-60834944 None:intergenic 25.0%
! GATAAATGAATAACTACAAC+AGG - chr5.2:60837655-60837674 None:intergenic 25.0%
! GTTGTAGTTATTCATTTATC+AGG + chr5.2:60837655-60837674 MS.gene50211:intron 25.0%
! TATTTACCAAAACTTCAAAC+AGG - chr5.2:60835423-60835442 None:intergenic 25.0%
! TTGAAGTTAGTATTAAAGCT+AGG - chr5.2:60837564-60837583 None:intergenic 25.0%
! TTTGAGAATAACCAATTAAG+TGG - chr5.2:60836015-60836034 None:intergenic 25.0%
!! ACTTTTTGTATGACATGTTT+TGG + chr5.2:60836757-60836776 MS.gene50211:intron 25.0%
!! GAGATTCAAATTCAAAGTTT+TGG - chr5.2:60837756-60837775 None:intergenic 25.0%
!! GTTGTATGTATTTTCATATC+TGG + chr5.2:60835794-60835813 MS.gene50211:intron 25.0%
!!! AAGAGTTTTATATAATCCTG+TGG + chr5.2:60836424-60836443 MS.gene50211:intron 25.0%
!!! ATTCAAAGTTTTGGATAACA+AGG - chr5.2:60837747-60837766 None:intergenic 25.0%
!!! GATTTGCTTTTACAAATTTC+AGG + chr5.2:60838227-60838246 MS.gene50211:intron 25.0%
!!! TTTGCTTTTACAAATTTCAG+GGG + chr5.2:60838229-60838248 MS.gene50211:intron 25.0%
AAATATGATCAGTGTAGCTT+TGG + chr5.2:60836253-60836272 MS.gene50211:intron 30.0%
AACAGAAGGAAGAATTAAGA+AGG - chr5.2:60835031-60835050 None:intergenic 30.0%
AAGTTTCAACATTCACAAGT+TGG - chr5.2:60837223-60837242 None:intergenic 30.0%
AATAGCTACAACTGTACAAT+AGG - chr5.2:60837042-60837061 None:intergenic 30.0%
AATATGATCAGTGTAGCTTT+GGG + chr5.2:60836254-60836273 MS.gene50211:intron 30.0%
AATCTGATAATTAACTCCAC+TGG - chr5.2:60836393-60836412 None:intergenic 30.0%
AGAAAAAAAACACGGAGATT+AGG - chr5.2:60834963-60834982 None:intergenic 30.0%
AGAAACGTTTACCTAATTAG+GGG - chr5.2:60836304-60836323 None:intergenic 30.0%
AGTACATCCTCATTAGAATT+TGG + chr5.2:60837877-60837896 MS.gene50211:intron 30.0%
AGTTACTAGAGAATGAAGAA+TGG - chr5.2:60837270-60837289 None:intergenic 30.0%
AGTTTCAACATTCACAAGTT+GGG - chr5.2:60837222-60837241 None:intergenic 30.0%
AGTTTGTAAGCAGTTCAAAA+GGG + chr5.2:60836491-60836510 MS.gene50211:intron 30.0%
ATCAGAAAAACGAAACTTTG+GGG - chr5.2:60835058-60835077 None:intergenic 30.0%
CAAGAAACGTTTACCTAATT+AGG - chr5.2:60836306-60836325 None:intergenic 30.0%
CGAATATAGACCAAAAACAT+AGG - chr5.2:60837355-60837374 None:intergenic 30.0%
TAAATTCAGTAGTACTTGTC+AGG - chr5.2:60835487-60835506 None:intergenic 30.0%
TAAGATCACAAGATCCTTAA+CGG - chr5.2:60837917-60837936 None:intergenic 30.0%
TAGATGAAAAACTGCATTTG+TGG + chr5.2:60836538-60836557 MS.gene50211:intron 30.0%
TATAAGCACTAGATCATGTA+TGG - chr5.2:60836337-60836356 None:intergenic 30.0%
TCTCATATCTTCTTTAAGCA+GGG - chr5.2:60837632-60837651 None:intergenic 30.0%
TCTTTCAATTATGTTCTTCC+TGG + chr5.2:60835300-60835319 MS.gene50211:intron 30.0%
TGAATCTAGCTAAGTTTACA+TGG - chr5.2:60836864-60836883 None:intergenic 30.0%
TGTAATAGTCCAATTAGTCA+CGG + chr5.2:60835611-60835630 MS.gene50211:intron 30.0%
TTAGACGCATCATAAGATTA+TGG - chr5.2:60835450-60835469 None:intergenic 30.0%
TTCTGCTATTAGATGTTTCT+AGG + chr5.2:60836683-60836702 MS.gene50211:intron 30.0%
TTTGCTTCTTTCAACAGTTT+AGG + chr5.2:60837777-60837796 MS.gene50211:intron 30.0%
! AAGTTGTGAACCTATGTTTT+TGG + chr5.2:60837342-60837361 MS.gene50211:intron 30.0%
! AATTATGTACTCGGACTTTT+AGG + chr5.2:60835328-60835347 MS.gene50211:intron 30.0%
! ACTTGATAGTTAATTTCTGG+AGG + chr5.2:60837482-60837501 MS.gene50211:intron 30.0%
! ATATCTGGTAATCTTTTCTG+TGG + chr5.2:60835809-60835828 MS.gene50211:intron 30.0%
! ATCTCATGGTAGATTTTCAT+AGG + chr5.2:60835946-60835965 MS.gene50211:intron 30.0%
! ATGGTGTTTTGTACAATACA+GGG - chr5.2:60837019-60837038 None:intergenic 30.0%
! CTGTAGTTTATCTTTTGGAT+TGG + chr5.2:60836207-60836226 MS.gene50211:intron 30.0%
! TATCTGGTAATCTTTTCTGT+GGG + chr5.2:60835810-60835829 MS.gene50211:intron 30.0%
! TGTGAACTCGTAATTTTTAC+TGG + chr5.2:60835977-60835996 MS.gene50211:intron 30.0%
! TTATGTTGTCTCCTTTAAGA+AGG - chr5.2:60838122-60838141 None:intergenic 30.0%
! TTGCTTCACTAAGTTGAATT+CGG + chr5.2:60837242-60837261 MS.gene50211:intron 30.0%
! TTTTGACGAGTACATGAATT+TGG + chr5.2:60837955-60837974 MS.gene50211:CDS 30.0%
!! TTTTAGGAAAGCTATGGTTT+TGG + chr5.2:60835344-60835363 MS.gene50211:intron 30.0%
!!! AGGGTGTTATTGTTTTGATT+AGG + chr5.2:60838090-60838109 MS.gene50211:intron 30.0%
!!! GGGTGTTATTGTTTTGATTA+GGG + chr5.2:60838091-60838110 MS.gene50211:intron 30.0%
!!! TGTATGACATGTTTTGGAAT+AGG + chr5.2:60836763-60836782 MS.gene50211:intron 30.0%
!!! TGTTATTGTTTTGATTAGGG+AGG + chr5.2:60838094-60838113 MS.gene50211:intron 30.0%
!!! TGTTTTTTAAGAAACCCCAA+AGG + chr5.2:60836967-60836986 MS.gene50211:intron 30.0%
AAGAAGAGCAAAAAGACACT+AGG + chr5.2:60838010-60838029 MS.gene50211:CDS 35.0%
AAGATCACAAGATCCTTAAC+GGG - chr5.2:60837916-60837935 None:intergenic 35.0%
AATCCTAAGTATATGAGCTG+AGG - chr5.2:60837424-60837443 None:intergenic 35.0%
AATTAGCATCAACCACTGTA+TGG + chr5.2:60837516-60837535 MS.gene50211:intron 35.0%
ATATTTGAGTAGACCCGTTA+AGG + chr5.2:60837900-60837919 MS.gene50211:intron 35.0%
CCAAACATGTTGAAAAAGAC+GGG + chr5.2:60836939-60836958 MS.gene50211:intron 35.0%
CCCAAACATGTTGAAAAAGA+CGG + chr5.2:60836938-60836957 MS.gene50211:intron 35.0%
CGAGTACATGAATTTGGTAT+TGG + chr5.2:60837961-60837980 MS.gene50211:CDS 35.0%
CTGGTGTAGAATTATGTACT+CGG + chr5.2:60835319-60835338 MS.gene50211:intron 35.0%
GAATTGATCATAGAAAGAGC+AGG - chr5.2:60835877-60835896 None:intergenic 35.0%
GAGTTTGTAAGCAGTTCAAA+AGG + chr5.2:60836490-60836509 MS.gene50211:intron 35.0%
GATAAACTACAGCACCAATA+AGG - chr5.2:60836199-60836218 None:intergenic 35.0%
GATCAAAGAGTTGTAAGTTG+TGG - chr5.2:60836573-60836592 None:intergenic 35.0%
GTAATAGTCCAATTAGTCAC+GGG + chr5.2:60835612-60835631 MS.gene50211:intron 35.0%
GTCTCATATCTTCTTTAAGC+AGG - chr5.2:60837633-60837652 None:intergenic 35.0%
TAAACAAGTCCATTATTGCG+AGG + chr5.2:60837165-60837184 MS.gene50211:intron 35.0%
TCAGCTCATATACTTAGGAT+TGG + chr5.2:60837423-60837442 MS.gene50211:intron 35.0%
TCATACTCCTATAACCAACT+CGG - chr5.2:60835698-60835717 None:intergenic 35.0%
TGATCAATTCTATTCTGCCA+TGG + chr5.2:60835887-60835906 MS.gene50211:intron 35.0%
TGTGATGAGAAGCTTACAAT+GGG - chr5.2:60834894-60834913 None:intergenic 35.0%
TTATTTATGCTGGGAGCAAT+GGG - chr5.2:60837126-60837145 None:intergenic 35.0%
TTTATTTATGCTGGGAGCAA+TGG - chr5.2:60837127-60837146 None:intergenic 35.0%
! ATCTGGTAATCTTTTCTGTG+GGG + chr5.2:60835811-60835830 MS.gene50211:intron 35.0%
! CCACTTATGCATTTTCTGAA+GGG + chr5.2:60838071-60838090 MS.gene50211:intron 35.0%
! GATGGTGTTTTGTACAATAC+AGG - chr5.2:60837020-60837039 None:intergenic 35.0%
! GGTTATAGGAGTATGAGTAA+GGG + chr5.2:60835702-60835721 MS.gene50211:intron 35.0%
! TCCACTTATGCATTTTCTGA+AGG + chr5.2:60838070-60838089 MS.gene50211:intron 35.0%
! TGGTTATAGGAGTATGAGTA+AGG + chr5.2:60835701-60835720 MS.gene50211:intron 35.0%
!! AAACTCTAGGCTATTTTCCA+TGG - chr5.2:60836362-60836381 None:intergenic 35.0%
!! AACTCTAGGCTATTTTCCAT+GGG - chr5.2:60836361-60836380 None:intergenic 35.0%
!! TTAGTCCCTGTTTGAAGTTT+TGG + chr5.2:60835414-60835433 MS.gene50211:intron 35.0%
!! TTTTTAGTGTAAACCTCCCA+AGG - chr5.2:60835644-60835663 None:intergenic 35.0%
!! TTTTTGAGCAGAAGGATTTG+AGG + chr5.2:60835130-60835149 MS.gene50211:CDS 35.0%
!!! ACTTAGGATTGGTTTGCTTT+TGG + chr5.2:60837434-60837453 MS.gene50211:intron 35.0%
!!! AGTTTTGGATAACAAGGATG+TGG - chr5.2:60837741-60837760 None:intergenic 35.0%
!!! CCGTCTTTTTCAACATGTTT+GGG - chr5.2:60836941-60836960 None:intergenic 35.0%
!!! CGTCTTTTTCAACATGTTTG+GGG - chr5.2:60836940-60836959 None:intergenic 35.0%
!!! CTTAGGATTGGTTTGCTTTT+GGG + chr5.2:60837435-60837454 MS.gene50211:intron 35.0%
!!! GTCTTTTTCAACATGTTTGG+GGG - chr5.2:60836939-60836958 None:intergenic 35.0%
!!! TGGTGCTGTAGTTTATCTTT+TGG + chr5.2:60836202-60836221 MS.gene50211:intron 35.0%
!!! TGTTATTTTTGCAGAAAGCG+CGG + chr5.2:60835094-60835113 MS.gene50211:intron 35.0%
!!! TTAGGATTGGTTTGCTTTTG+GGG + chr5.2:60837436-60837455 MS.gene50211:intron 35.0%
AACGTTTACCTAATTAGGGG+TGG - chr5.2:60836301-60836320 None:intergenic 40.0%
ACAGCTAAAAGTAACACCAC+AGG - chr5.2:60836443-60836462 None:intergenic 40.0%
ACATTCACCTCCTTTCACAT+TGG - chr5.2:60837089-60837108 None:intergenic 40.0%
ATCAAATCGACAAGCTCCAT+AGG - chr5.2:60835928-60835947 None:intergenic 40.0%
ATGAGAAGCTTACAATGGGT+TGG - chr5.2:60834890-60834909 None:intergenic 40.0%
ATTCATGAGCTCGTTTCTTG+GGG + chr5.2:60837817-60837836 MS.gene50211:intron 40.0%
CAGAAGGATTTGAGGATTGA+AGG + chr5.2:60835138-60835157 MS.gene50211:CDS 40.0%
CATTCACCTCCTTTCACATT+GGG - chr5.2:60837088-60837107 None:intergenic 40.0%
CCCTTCAGAAAATGCATAAG+TGG - chr5.2:60838074-60838093 None:intergenic 40.0%
CGAGTACATAATTCTACACC+AGG - chr5.2:60835321-60835340 None:intergenic 40.0%
CTAAGTATATGAGCTGAGGT+GGG - chr5.2:60837420-60837439 None:intergenic 40.0%
CTTACAAACTCCACAGGTTT+GGG - chr5.2:60836481-60836500 None:intergenic 40.0%
GAAAACCTGATTGTGACCTA+TGG + chr5.2:60835909-60835928 MS.gene50211:intron 40.0%
GAAGACGATTGATGTATGAG+AGG - chr5.2:60836169-60836188 None:intergenic 40.0%
GATCTAGTGCTTATAACCCA+TGG + chr5.2:60836342-60836361 MS.gene50211:intron 40.0%
GATTCATGAGCTCGTTTCTT+GGG + chr5.2:60837816-60837835 MS.gene50211:intron 40.0%
GCTACAACTGTACAATAGGA+TGG - chr5.2:60837038-60837057 None:intergenic 40.0%
GGATGTGGTCAAGATAAATG+CGG - chr5.2:60837726-60837745 None:intergenic 40.0%
GTGTGATGAGAAGCTTACAA+TGG - chr5.2:60834895-60834914 None:intergenic 40.0%
TACATCAATCGTCTTCCTAG+TGG + chr5.2:60836173-60836192 MS.gene50211:intron 40.0%
TATTTATGCTGGGAGCAATG+GGG - chr5.2:60837125-60837144 None:intergenic 40.0%
TCATGTGACTCAACAACTCT+AGG + chr5.2:60836803-60836822 MS.gene50211:intron 40.0%
TGATTCATGAGCTCGTTTCT+TGG + chr5.2:60837815-60837834 MS.gene50211:intron 40.0%
TTAGGGAGGATCCTTCTTAA+AGG + chr5.2:60838108-60838127 MS.gene50211:intron 40.0%
TTGTGAGAAACAGTATGTCG+CGG - chr5.2:60836067-60836086 None:intergenic 40.0%
! AATTTCTGGAGGAGATGATC+TGG + chr5.2:60837493-60837512 MS.gene50211:intron 40.0%
! AGCATAGAGCTTTTGCTTGT+CGG - chr5.2:60836733-60836752 None:intergenic 40.0%
! ATTTGCCAAGTTAGCCTGTT+AGG - chr5.2:60837196-60837215 None:intergenic 40.0%
! TAGAGTTTTACACAAGCCAG+TGG + chr5.2:60836374-60836393 MS.gene50211:intron 40.0%
! TGAGAAGCTTACAATGGGTT+GGG - chr5.2:60834889-60834908 None:intergenic 40.0%
!! ACTGGCTTGTGTAAAACTCT+AGG - chr5.2:60836375-60836394 None:intergenic 40.0%
!! AGCTTGTCGATTTGATCTCA+TGG + chr5.2:60835932-60835951 MS.gene50211:intron 40.0%
!! TCGGACTTTTAGGAAAGCTA+TGG + chr5.2:60835338-60835357 MS.gene50211:intron 40.0%
!!! CCCGTCTTTTTCAACATGTT+TGG - chr5.2:60836942-60836961 None:intergenic 40.0%
!!! GATTTGGCTTTTTGAGCAGA+AGG + chr5.2:60835122-60835141 MS.gene50211:CDS 40.0%
AAGCTCCATAGGTCACAATC+AGG - chr5.2:60835917-60835936 None:intergenic 45.0%
AATGACAGAGTTAGCCGAGT+TGG + chr5.2:60835681-60835700 MS.gene50211:intron 45.0%
ACAATTCTGCCTCCATACAG+TGG - chr5.2:60837531-60837550 None:intergenic 45.0%
ACGATTGATGTATGAGAGGC+AGG - chr5.2:60836165-60836184 None:intergenic 45.0%
AGCTGATGGGAATCAACTTC+TGG - chr5.2:60836116-60836135 None:intergenic 45.0%
AGTTCAAAAGGGACAGCTGA+TGG + chr5.2:60836502-60836521 MS.gene50211:intron 45.0%
ATCCAACAGCCCAATGTGAA+AGG + chr5.2:60837076-60837095 MS.gene50211:intron 45.0%
CCACCTCAGCTCATATACTT+AGG + chr5.2:60837418-60837437 MS.gene50211:intron 45.0%
CCTAAGTATATGAGCTGAGG+TGG - chr5.2:60837421-60837440 None:intergenic 45.0%
CGATTGATGTATGAGAGGCA+GGG - chr5.2:60836164-60836183 None:intergenic 45.0%
CTAGATTCACGAGTTTGACG+AGG + chr5.2:60836875-60836894 MS.gene50211:intron 45.0%
CTTCACTTCCACCCCTAATT+AGG + chr5.2:60836290-60836309 MS.gene50211:intron 45.0%
GAACTGCTTACAAACTCCAC+AGG - chr5.2:60836487-60836506 None:intergenic 45.0%
GCTTACAAACTCCACAGGTT+TGG - chr5.2:60836482-60836501 None:intergenic 45.0%
GGAGTATGAGTAAGGGAGAT+CGG + chr5.2:60835709-60835728 MS.gene50211:intron 45.0%
GGTCATAACCCTCTGAACTT+TGG - chr5.2:60834868-60834887 None:intergenic 45.0%
GTCAAGATAAATGCGGATGG+TGG - chr5.2:60837719-60837738 None:intergenic 45.0%
GTGGTCAAGATAAATGCGGA+TGG - chr5.2:60837722-60837741 None:intergenic 45.0%
GTTTCTTGGGGGAATATGCT+TGG + chr5.2:60837829-60837848 MS.gene50211:intron 45.0%
TAGCATCAACCACTGTATGG+AGG + chr5.2:60837519-60837538 MS.gene50211:intron 45.0%
TAGGTGCAACCTCGCAATAA+TGG - chr5.2:60837177-60837196 None:intergenic 45.0%
TTCATGAGCTCGTTTCTTGG+GGG + chr5.2:60837818-60837837 MS.gene50211:intron 45.0%
TTGATGTTTGCCCAAACCTG+TGG + chr5.2:60836468-60836487 MS.gene50211:intron 45.0%
TTGCACCTAACAGGCTAACT+TGG + chr5.2:60837188-60837207 MS.gene50211:intron 45.0%
! AGAAAGCGCGGATTCAGATT+TGG + chr5.2:60835106-60835125 MS.gene50211:intron 45.0%
! AGTCTTGTCTGGTTAGACCA+GGG + chr5.2:60837382-60837401 MS.gene50211:intron 45.0%
! GCATAGAGCTTTTGCTTGTC+GGG - chr5.2:60836732-60836751 None:intergenic 45.0%
! GCGACATACTGTTTCTCACA+AGG + chr5.2:60836066-60836085 MS.gene50211:intron 45.0%
! GGTCACAATCAGGTTTTCCA+TGG - chr5.2:60835907-60835926 None:intergenic 45.0%
!! AACTTTGGGGCAAGAACAGA+AGG - chr5.2:60835045-60835064 None:intergenic 45.0%
!! GAGTTAGCCGAGTTGGTTAT+AGG + chr5.2:60835688-60835707 MS.gene50211:intron 45.0%
!! GGGTTCAGTCGTCTTATTTG+TGG + chr5.2:60837456-60837475 MS.gene50211:intron 45.0%
ACAGCACCAATAAGGCCACT+AGG - chr5.2:60836191-60836210 None:intergenic 50.0%
AGGCAGGGATACAAGCAAAG+TGG - chr5.2:60836149-60836168 None:intergenic 50.0%
AGGGATACAAGCAAAGTGGC+TGG - chr5.2:60836145-60836164 None:intergenic 50.0%
ATTGCGAGGTTGCACCTAAC+AGG + chr5.2:60837179-60837198 MS.gene50211:intron 50.0%
CAACAGCCCAATGTGAAAGG+AGG + chr5.2:60837079-60837098 MS.gene50211:intron 50.0%
CTCCTTTCACATTGGGCTGT+TGG - chr5.2:60837081-60837100 None:intergenic 50.0%
GGCACAAACCCGTGACTAAT+TGG - chr5.2:60835623-60835642 None:intergenic 50.0%
TACCCTTCAGCTGTTGCATC+TGG - chr5.2:60836993-60837012 None:intergenic 50.0%
TAGTCACGGGTTTGTGCCTT+GGG + chr5.2:60835625-60835644 MS.gene50211:intron 50.0%
TGGCTGGTAGTACAGCTGAT+GGG - chr5.2:60836129-60836148 None:intergenic 50.0%
TGGGCTGTTGGATGCATATG+TGG - chr5.2:60837069-60837088 None:intergenic 50.0%
TTAGTCACGGGTTTGTGCCT+TGG + chr5.2:60835624-60835643 MS.gene50211:intron 50.0%
! AGCTGTTGCATCTGGCCTTT+GGG - chr5.2:60836985-60837004 None:intergenic 50.0%
! AGCTTTTGCTTGTCGGGTAC+AGG - chr5.2:60836726-60836745 None:intergenic 50.0%
! GAGTCTTGTCTGGTTAGACC+AGG + chr5.2:60837381-60837400 MS.gene50211:intron 50.0%
! TTCGCTGCTTGAGTCTTGTC+TGG + chr5.2:60837371-60837390 MS.gene50211:intron 50.0%
!! CGTCTTCCTAGTGGCCTTAT+TGG + chr5.2:60836182-60836201 MS.gene50211:intron 50.0%
AGGCCAGATGCAACAGCTGA+AGG + chr5.2:60836987-60837006 MS.gene50211:intron 55.0%
GGCCAGATGCAACAGCTGAA+GGG + chr5.2:60836988-60837007 MS.gene50211:intron 55.0%
GGCGAGCACCAAAGTTCAGA+GGG + chr5.2:60834857-60834876 MS.gene50211:CDS 55.0%
GTGGCTGGTAGTACAGCTGA+TGG - chr5.2:60836130-60836149 None:intergenic 55.0%
TGGCGAGCACCAAAGTTCAG+AGG + chr5.2:60834856-60834875 MS.gene50211:CDS 55.0%
! CAGCTGTTGCATCTGGCCTT+TGG - chr5.2:60836986-60837005 None:intergenic 55.0%
! GCTGTTGCATCTGGCCTTTG+GGG - chr5.2:60836984-60837003 None:intergenic 55.0%
CTGGTTAGACCAGGGCAGCA+AGG + chr5.2:60837390-60837409 MS.gene50211:intron 60.0%
TCACGGGTTTGTGCCTTGGG+AGG + chr5.2:60835628-60835647 MS.gene50211:intron 60.0%
TGCTGGGAGCAATGGGGTTG+CGG - chr5.2:60837119-60837138 None:intergenic 60.0%
GTGGGCAGACCTTGCTGCCC+TGG - chr5.2:60837402-60837421 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 60834855 60838258 60834855 ID=MS.gene50211
chr5.2 mRNA 60834855 60838258 60834855 ID=MS.gene50211.t1;Parent=MS.gene50211
chr5.2 exon 60834855 60834896 60834855 ID=MS.gene50211.t1.exon1;Parent=MS.gene50211.t1
chr5.2 CDS 60834855 60834896 60834855 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
chr5.2 exon 60834995 60835021 60834995 ID=MS.gene50211.t1.exon2;Parent=MS.gene50211.t1
chr5.2 CDS 60834995 60835021 60834995 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
chr5.2 exon 60835108 60835170 60835108 ID=MS.gene50211.t1.exon3;Parent=MS.gene50211.t1
chr5.2 CDS 60835108 60835170 60835108 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
chr5.2 exon 60837953 60838031 60837953 ID=MS.gene50211.t1.exon4;Parent=MS.gene50211.t1
chr5.2 CDS 60837953 60838031 60837953 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
chr5.2 exon 60838112 60838157 60838112 ID=MS.gene50211.t1.exon5;Parent=MS.gene50211.t1
chr5.2 CDS 60838112 60838157 60838112 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
chr5.2 exon 60838249 60838258 60838249 ID=MS.gene50211.t1.exon6;Parent=MS.gene50211.t1
chr5.2 CDS 60838249 60838258 60838249 ID=cds.MS.gene50211.t1;Parent=MS.gene50211.t1
Gene Sequence

>MS.gene50211

ATGGCGAGCACCAAAGTTCAGAGGGTTATGACCCAACCCATTGTAAGCTTCTCATCACACTCTTTCCCCTTTCAATTTCACTTTTCTTTCTCTTTAACAACTTAACCTAATCTCCGTGTTTTTTTTCTTCTTTTTCTCAGAACTTGATCTTCAGATTTCTTCAAAGCGTAAGTCCTTCTTAATTCTTCCTTCTGTTCTTGCCCCAAAGTTTCGTTTTTCTGATTTTTTTTTATTTTATTTGTTATTTTTGCAGAAAGCGCGGATTCAGATTTGGCTTTTTGAGCAGAAGGATTTGAGGATTGAAGGAAGAATCATTGTAAGTTTATTTTTTTCAAGCTTGCTTTTTTTTTTTTACACGGGTAATTATCAATTCAATTTTAAAATGTTGTGAAAAATTGAAAAAAAAAACAGTTTTTTTTAATTGAGATTTTGTTGCTGTGAATTTTCTTTCAATTATGTTCTTCCTGGTGTAGAATTATGTACTCGGACTTTTAGGAAAGCTATGGTTTTGGTGTGCAATAATCTATTTGTTTATTTTAATATGCTGAACAATTGTAAATTAGTCCCTGTTTGAAGTTTTGGTAAATATCTACCATAATCTTATGATGCGTCTAATTTCAATTTGACTTCCTGACAAGTACTACTGAATTTAAATTATTGTTGCTATTGGTATGAGTTGTGTTTTAAGAAACATATGCATAAAACCAATCACATTATGATGTCATTTGATTCGTGTAAGAATGCACAATAGAAAGTTGTAATAGTCCAATTAGTCACGGGTTTGTGCCTTGGGAGGTTTACACTAAAAAAAAAAAGAAAGGGGCGCAATGACAGAGTTAGCCGAGTTGGTTATAGGAGTATGAGTAAGGGAGATCGGATCATTGAGTGTAATTAAGATTATTTTTTCTTGCATTTTCTTTCAATTTCATGCATGTATTTGTTGTATGTATTTTCATATCTGGTAATCTTTTCTGTGGGGATTCATTTGTTTTCATAAATGCAAGAAGTATTAAACTTTTCCTGCTCTTTCTATGATCAATTCTATTCTGCCATGGAAAACCTGATTGTGACCTATGGAGCTTGTCGATTTGATCTCATGGTAGATTTTCATAGGTCTAGAGTTGTGAACTCGTAATTTTTACTGGTAGTTTTTTAATCCACTTAATTGGTTATTCTCAAATATTTCATAGGCTTTTCATTCAAATTTAGCCGCGACATACTGTTTCTCACAAGGTTCCCTTAAATGTATTTACAATAACCAGAAGTTGATTCCCATCAGCTGTACTACCAGCCACTTTGCTTGTATCCCTGCCTCTCATACATCAATCGTCTTCCTAGTGGCCTTATTGGTGCTGTAGTTTATCTTTTGGATTGGCTTAATATATATTATATAAAATAAAATATGATCAGTGTAGCTTTGGGTGTATCTGTGACTCTTCACTTCCACCCCTAATTAGGTAAACGTTTCTTGATAGTTGACCATACATGATCTAGTGCTTATAACCCATGGAAAATAGCCTAGAGTTTTACACAAGCCAGTGGAGTTAATTATCAGATTTTAGCCAAGCCAAGAGTTTTATATAATCCTGTGGTGTTACTTTTAGCTGTGCATTTTGATGTTTGCCCAAACCTGTGGAGTTTGTAAGCAGTTCAAAAGGGACAGCTGATGGAAGTGCAGAAAAATAGATGAAAAACTGCATTTGTGGAGTTATTTTCCACAACTTACAACTCTTTGATCATTGCTTTTTTTTTTTTTTCAATTTTGATTGTCTAGAGCTTATGTGATGTTTAGTGCTGTTGTGTAGCTGAATCTTCACAAACTGCTATTTTCTGCTATTAGATGTTTCTAGGAACAGATAGATTAGAAACCTGTACCCGACAAGCAAAAGCTCTATGCTTACAACTTTTTGTATGACATGTTTTGGAATAGGACGTTGTTAACTCATAATCATGTGACTCAACAACTCTAGGAATCAAAATCGAGTTAATTCAATTACAAACGGTTTCCATGTAAACTTAGCTAGATTCACGAGTTTGACGAGGATCAAACATGTCTACAAAATAATGGTTGTATATTTTCTCCCCCAAACATGTTGAAAAAGACGGGTTTATTGTTTTTTAAGAAACCCCAAAGGCCAGATGCAACAGCTGAAGGGTAATGCCCTGTATTGTACAAAACACCATCCTATTGTACAGTTGTAGCTATTGATTCCACATATGCATCCAACAGCCCAATGTGAAAGGAGGTGAATGTGTTAGAGCCGCAACCCCATTGCTCCCAGCATAAATAAATTTGCAAATTAGAATACATAAACAAGTCCATTATTGCGAGGTTGCACCTAACAGGCTAACTTGGCAAATGAACCCAACTTGTGAATGTTGAAACTTTGCTTCACTAAGTTGAATTCGGAACCATTCTTCATTCTCTAGTAACTTTGAATCTTGTAATTTAATGATTTGGAACTTTTTGCGTTTTTGCTGTGTGCTAAGTTGTGAACCTATGTTTTTGGTCTATATTCGCTGCTTGAGTCTTGTCTGGTTAGACCAGGGCAGCAAGGTCTGCCCACCTCAGCTCATATACTTAGGATTGGTTTGCTTTTGGGGTTCAGTCGTCTTATTTGTGGATTACTTGATAGTTAATTTCTGGAGGAGATGATCTGGAATTAGCATCAACCACTGTATGGAGGCAGAATTGTAGTTATTTTGCCTAGCTTTAATACTAACTTCAAATAAATTTGTATTTCAAACTGTTGTAAAAAACTAAAATACAAAATCCCTGCTTAAAGAAGATATGAGACCTGTTGTAGTTATTCATTTATCAGGTGCTCTAAGAAATGTGATATTACACTTGTCACTACTTTCCACCATCCGCATTTATCTTGACCACATCCTTGTTATCCAAAACTTTGAATTTGAATCTCATTTGCTTCTTTCAACAGTTTAGGACTTTGTAAACTTTTTGATTCATGAGCTCGTTTCTTGGGGGAATATGCTTGGTTATTGTTTCTGTTAGAGTGTAGACAGTACATCCTCATTAGAATTTGGATATTTGAGTAGACCCGTTAAGGATCTTGTGATCTTATTTTTGTTTTGAACAGGGTTTTGACGAGTACATGAATTTGGTATTGGATGATGCTGAAGAAGTAAACGTCAAGAAGAAGAGCAAAAAGACACTAGGTAATACACATTTCTCAAATTTGATTCTATTTCTCTTTTCCACTTATGCATTTTCTGAAGGGTGTTATTGTTTTGATTAGGGAGGATCCTTCTTAAAGGAGACAACATAACTTTGATGATGAACACGTAAGTGAAATTAAATTCACATTTTCATCTATTTCTCTATTGTTTTCTTCTCCACAATGTAAGTGAAATGATTTGCTTTTACAAATTTCAGGGGTAAATGA
Protein sequence

>MS.gene50211.t1

MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTGK