Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067444.t1 | XP_003597961.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.40E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067444.t1 | A4FUI2 | 72.8 | 81 | 22 | 0 | 5 | 85 | 9 | 89 | 4.8e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067444.t1 | G7IMA2 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.0e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067444.t1 | MTR_5g072530 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| MS.gene067444.t1 | MTR_2g104440 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067444.t1 | AT4G30330 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 4.45e-55 | 165 |
| MS.gene067444.t1 | AT2G18740 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 5.93e-55 | 165 |
| MS.gene067444.t1 | AT2G18740 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 2.53e-42 | 133 |
Find 13 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATACATGAATTTGGTTT+TGG | 0.297744 | 2.4:-1074914 | MS.gene067444:CDS |
| TCAGGGAGGATCCTTCTTAA+AGG | 0.324647 | 2.4:-1074767 | MS.gene067444:intron |
| GCAAAGCGCGGATTCAGATT+TGG | 0.362553 | 2.4:-1078140 | MS.gene067444:CDS |
| CAAAAGGATTTGAGGATTGA+AGG | 0.404712 | 2.4:-1078108 | MS.gene067444:CDS |
| GGTCATGACCCTTTGAACTT+TGG | 0.450628 | 2.4:+1078274 | None:intergenic |
| TTATGTTGTCTCCTTTAAGA+AGG | 0.459912 | 2.4:+1074756 | None:intergenic |
| ACAAATTTCAGGGGTAAATG+AGG | 0.483171 | 2.4:-1074639 | None:intergenic |
| GAGAAAGCATACAATGGGTT+GGG | 0.488064 | 2.4:+1078253 | None:intergenic |
| GGCGAGCACCAAAGTTCAAA+GGG | 0.524848 | 2.4:-1078282 | MS.gene067444:CDS |
| TTGAACTTTGGTGCTCGCCA+TGG | 0.529943 | 2.4:+1078286 | None:intergenic |
| TGAGAAAGCATACAATGGGT+TGG | 0.551589 | 2.4:+1078252 | None:intergenic |
| TGGCGAGCACCAAAGTTCAA+AGG | 0.558128 | 2.4:-1078283 | MS.gene067444:CDS |
| GATTTCTTCAAAGCAAAGCG+CGG | 0.674013 | 2.4:-1078152 | MS.gene067444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATCATTGTTTTTTA+TGG | - | chr2.4:1074877-1074896 | MS.gene067444:CDS | 10.0% |
| !!! | TTTTCTTTTTGTTATAAATA+GGG | - | chr2.4:1077982-1078001 | MS.gene067444:intron | 10.0% |
| !!! | TTTTTAGATTTTTAATGAAT+TGG | - | chr2.4:1075863-1075882 | MS.gene067444:intron | 10.0% |
| !!! | TTTTTCTTTTTGTTATAAAT+AGG | - | chr2.4:1077981-1078000 | MS.gene067444:intron | 10.0% |
| !! | AAATCATTTCACTTAAATTT+AGG | + | chr2.4:1078260-1078279 | None:intergenic | 15.0% |
| !! | AAGAATTAAATATTAGAAGT+TGG | + | chr2.4:1075893-1075912 | None:intergenic | 15.0% |
| !! | AGAATTAAATATTAGAAGTT+GGG | + | chr2.4:1075892-1075911 | None:intergenic | 15.0% |
| !! | CTATATATAAAAAGGATATA+TGG | + | chr2.4:1076351-1076370 | None:intergenic | 15.0% |
| !! | TTAAATTTGTATATGATGTT+TGG | + | chr2.4:1076559-1076578 | None:intergenic | 15.0% |
| !!! | CTTGTTATTCATATAAAAAA+GGG | - | chr2.4:1075551-1075570 | MS.gene067444:intron | 15.0% |
| !!! | TCTTGTTATTCATATAAAAA+AGG | - | chr2.4:1075550-1075569 | MS.gene067444:intron | 15.0% |
| !! | AAAAGAAGAGAAAAATGAAA+AGG | + | chr2.4:1075461-1075480 | None:intergenic | 20.0% |
| !! | AAATTAATAAACCAAAAGAC+AGG | + | chr2.4:1077295-1077314 | None:intergenic | 20.0% |
| !! | AACTTTAATACTAACTTCAA+AGG | - | chr2.4:1077615-1077634 | MS.gene067444:intron | 20.0% |
| !! | ATTTGTAAATTAAGTTATGC+TGG | + | chr2.4:1077064-1077083 | None:intergenic | 20.0% |
| !! | GAATTAAATATTAGAAGTTG+GGG | + | chr2.4:1075891-1075910 | None:intergenic | 20.0% |
| !! | TTGAAGTTAGTATTAAAGTT+AGG | + | chr2.4:1077615-1077634 | None:intergenic | 20.0% |
| !! | TTGTTAAAGAGAAATTGAAA+GGG | + | chr2.4:1074710-1074729 | None:intergenic | 20.0% |
| !! | TTTGTAAATTAAGTTATGCT+GGG | + | chr2.4:1077063-1077082 | None:intergenic | 20.0% |
| !!! | AAATGTTTGCTTATTGTTTT+TGG | - | chr2.4:1077895-1077914 | MS.gene067444:intron | 20.0% |
| !!! | ATAAAAAAGGGTATATTGAT+GGG | - | chr2.4:1075563-1075582 | MS.gene067444:intron | 20.0% |
| !!! | ATTTGCTTTTACAAATTTCA+GGG | - | chr2.4:1078276-1078295 | MS.gene067444:CDS | 20.0% |
| !!! | CCTAAAAAAATTTGTTTCTT+GGG | + | chr2.4:1075765-1075784 | None:intergenic | 20.0% |
| !!! | GCTAGTTTCTAATAAAAAAA+GGG | + | chr2.4:1075938-1075957 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGGGTATATTGA+TGG | - | chr2.4:1075562-1075581 | MS.gene067444:intron | 20.0% |
| !!! | TGAATCTAGCTAATTTTATA+GGG | + | chr2.4:1076780-1076799 | None:intergenic | 20.0% |
| !!! | TGCTAGTTTCTAATAAAAAA+AGG | + | chr2.4:1075939-1075958 | None:intergenic | 20.0% |
| !!! | TTAGATCTTATTTTCAGTTA+AGG | + | chr2.4:1076429-1076448 | None:intergenic | 20.0% |
| !!! | TTTTGATGAATACATGAATT+TGG | - | chr2.4:1078005-1078024 | MS.gene067444:intron | 20.0% |
| ! | AAGTGTAATATTTCTTAGAG+AGG | + | chr2.4:1077738-1077757 | None:intergenic | 25.0% |
| ! | AATGAAAAGGAAAGAGATAA+AGG | + | chr2.4:1075448-1075467 | None:intergenic | 25.0% |
| ! | AATGATATATGATTGTCTTG+AGG | - | chr2.4:1075184-1075203 | MS.gene067444:intron | 25.0% |
| ! | AGACAATCATATATCATTTC+AGG | + | chr2.4:1075182-1075201 | None:intergenic | 25.0% |
| ! | AGTTACTAGAAAATGAATGA+TGG | + | chr2.4:1077209-1077228 | None:intergenic | 25.0% |
| ! | GAAACAAGAGATTAAAGAAA+AGG | + | chr2.4:1075500-1075519 | None:intergenic | 25.0% |
| ! | GATGTTCTTGTATGAAAAAT+GGG | - | chr2.4:1076632-1076651 | MS.gene067444:intron | 25.0% |
| ! | GTTGTTAAAGAGAAATTGAA+AGG | + | chr2.4:1074711-1074730 | None:intergenic | 25.0% |
| ! | TGATGTTCTTGTATGAAAAA+TGG | - | chr2.4:1076631-1076650 | MS.gene067444:intron | 25.0% |
| ! | TTTCAAATTGGATATTTGAG+TGG | - | chr2.4:1077940-1077959 | MS.gene067444:intron | 25.0% |
| !! | AATCTAGCTAATTTTATAGG+GGG | + | chr2.4:1076778-1076797 | None:intergenic | 25.0% |
| !! | AGGTTTTCAGTTATTTAGAT+CGG | + | chr2.4:1076409-1076428 | None:intergenic | 25.0% |
| !! | ATTTCAAAATGTTGCGATTT+TGG | - | chr2.4:1075125-1075144 | MS.gene067444:intron | 25.0% |
| !! | GAATCTAGCTAATTTTATAG+GGG | + | chr2.4:1076779-1076798 | None:intergenic | 25.0% |
| !! | GAATTTTGTATTTCAAACTG+AGG | - | chr2.4:1077637-1077656 | MS.gene067444:intron | 25.0% |
| !! | GAGATTCAAATTCAAAGTTT+TGG | + | chr2.4:1077809-1077828 | None:intergenic | 25.0% |
| !! | GCCTAAAAAAATTTGTTTCT+TGG | + | chr2.4:1075766-1075785 | None:intergenic | 25.0% |
| !! | GTGAATCTAGCTAATTTTAT+AGG | + | chr2.4:1076781-1076800 | None:intergenic | 25.0% |
| !! | TAAAAAAGGGTATATTGATG+GGG | - | chr2.4:1075564-1075583 | MS.gene067444:intron | 25.0% |
| !! | TGAATCTAGCTAATTTTACA+TGG | + | chr2.4:1075030-1075049 | None:intergenic | 25.0% |
| !!! | ACTTGTGTGAAAGTTTTAAT+AGG | + | chr2.4:1075154-1075173 | None:intergenic | 25.0% |
| !!! | ATCGCAACATTTTGAAATTT+AGG | + | chr2.4:1075123-1075142 | None:intergenic | 25.0% |
| !!! | ATCGGTTTGTCATTTTAATT+TGG | + | chr2.4:1076391-1076410 | None:intergenic | 25.0% |
| !!! | ATGATGTTATTGTTTTGATC+AGG | - | chr2.4:1078140-1078159 | MS.gene067444:CDS | 25.0% |
| !!! | ATTCAAAGTTTTGGATAACA+TGG | + | chr2.4:1077800-1077819 | None:intergenic | 25.0% |
| !!! | CAAGTTCTGAGAAAAAAAAA+CGG | + | chr2.4:1074746-1074765 | None:intergenic | 25.0% |
| !!! | CCCAAGAAACAAATTTTTTT+AGG | - | chr2.4:1075762-1075781 | MS.gene067444:intron | 25.0% |
| !!! | CTTGTGTGAAAGTTTTAATA+GGG | + | chr2.4:1075153-1075172 | None:intergenic | 25.0% |
| !!! | GATTTGCTTTTACAAATTTC+AGG | - | chr2.4:1078275-1078294 | MS.gene067444:CDS | 25.0% |
| !!! | GCATTTTCATCTATTTCTAT+GGG | - | chr2.4:1078226-1078245 | MS.gene067444:intron | 25.0% |
| !!! | TCGCAACATTTTGAAATTTA+GGG | + | chr2.4:1075122-1075141 | None:intergenic | 25.0% |
| !!! | TGAATACATGAATTTGGTTT+TGG | - | chr2.4:1078011-1078030 | MS.gene067444:intron | 25.0% |
| !!! | TGATGTTATTGTTTTGATCA+GGG | - | chr2.4:1078141-1078160 | MS.gene067444:CDS | 25.0% |
| !!! | TGCATTTTCATCTATTTCTA+TGG | - | chr2.4:1078225-1078244 | MS.gene067444:intron | 25.0% |
| !!! | TGTTGTATTTGCTATATTGT+TGG | + | chr2.4:1076097-1076116 | None:intergenic | 25.0% |
| !!! | TTGTCTGTTTTTCTTTTTTG+TGG | - | chr2.4:1076193-1076212 | MS.gene067444:intron | 25.0% |
| !!! | TTGTGTGAAAGTTTTAATAG+GGG | + | chr2.4:1075152-1075171 | None:intergenic | 25.0% |
| !!! | TTTATGGCATGTTTTAGAAT+AGG | - | chr2.4:1074893-1074912 | MS.gene067444:CDS | 25.0% |
| !!! | TTTGCTTTTACAAATTTCAG+GGG | - | chr2.4:1078277-1078296 | MS.gene067444:CDS | 25.0% |
| AAATTGGATATTTGAGTGGT+TGG | - | chr2.4:1077944-1077963 | MS.gene067444:intron | 30.0% | |
| AATTTCAGATCATCTCTTCT+AGG | + | chr2.4:1077543-1077562 | None:intergenic | 30.0% | |
| ACATGGTACTCATTTCAAAT+TGG | - | chr2.4:1077928-1077947 | MS.gene067444:intron | 30.0% | |
| ACTAGAAAATGAATGATGGT+TGG | + | chr2.4:1077205-1077224 | None:intergenic | 30.0% | |
| AGTTATTTGGATTCTGATTC+TGG | - | chr2.4:1077363-1077382 | MS.gene067444:intron | 30.0% | |
| ATTCATGAGCTCATTTCTTA+GGG | - | chr2.4:1077870-1077889 | MS.gene067444:intron | 30.0% | |
| CATACTAGTACAAAATACGT+AGG | + | chr2.4:1076584-1076603 | None:intergenic | 30.0% | |
| GAATAACCAAACACCATTAA+TGG | + | chr2.4:1075416-1075435 | None:intergenic | 30.0% | |
| GAGAAAAAAAAACGGAGATT+AGG | + | chr2.4:1074738-1074757 | None:intergenic | 30.0% | |
| GCAATAAAAATGACGAACAA+GGG | + | chr2.4:1075966-1075985 | None:intergenic | 30.0% | |
| GGAGCATAATGGTTATTTAT+TGG | - | chr2.4:1075077-1075096 | MS.gene067444:intron | 30.0% | |
| TGCAATAAAAATGACGAACA+AGG | + | chr2.4:1075967-1075986 | None:intergenic | 30.0% | |
| TGCAGTATATATGTAAGATC+CGG | + | chr2.4:1076239-1076258 | None:intergenic | 30.0% | |
| TGGTTGTTTAATTATGGAGT+TGG | + | chr2.4:1075277-1075296 | None:intergenic | 30.0% | |
| TTCCAAATCGATAAACTACA+AGG | + | chr2.4:1077237-1077256 | None:intergenic | 30.0% | |
| TTCTTATCTCTTCTTTCAGA+GGG | + | chr2.4:1077685-1077704 | None:intergenic | 30.0% | |
| TTTCTTATCTCTTCTTTCAG+AGG | + | chr2.4:1077686-1077705 | None:intergenic | 30.0% | |
| TTTGATACCTAGAGTTATTG+AGG | + | chr2.4:1074978-1074997 | None:intergenic | 30.0% | |
| TTTGTCTCTTTCAACAGTTT+AGG | - | chr2.4:1077830-1077849 | MS.gene067444:intron | 30.0% | |
| ! | AACCTTGTAGTTTATCGATT+TGG | - | chr2.4:1077232-1077251 | MS.gene067444:intron | 30.0% |
| ! | ATAGTGTTTTGCACAATACA+AGG | + | chr2.4:1076935-1076954 | None:intergenic | 30.0% |
| ! | ATATGGTTTAGTGCCATTAA+TGG | - | chr2.4:1075400-1075419 | MS.gene067444:intron | 30.0% |
| ! | TCTGCATTGTTATTCTATTG+CGG | - | chr2.4:1075518-1075537 | MS.gene067444:intron | 30.0% |
| ! | TTATGTTGTCTCCTTTAAGA+AGG | + | chr2.4:1078172-1078191 | None:intergenic | 30.0% |
| !! | GTTTGTTGATGGTTTACATT+GGG | + | chr2.4:1077004-1077023 | None:intergenic | 30.0% |
| !! | TCTGTTTTTCTTTTTTGTGG+TGG | - | chr2.4:1076196-1076215 | MS.gene067444:intron | 30.0% |
| !! | TGTCTTATTTGTGGATGTTA+GGG | - | chr2.4:1077499-1077518 | MS.gene067444:intron | 30.0% |
| !! | TGTGTGAAAGTTTTAATAGG+GGG | + | chr2.4:1075151-1075170 | None:intergenic | 30.0% |
| !! | TTTTTGAGCAAAAGGATTTG+AGG | - | chr2.4:1074809-1074828 | MS.gene067444:intron | 30.0% |
| !! | TTTTTGGTATAGAGTGTACA+TGG | - | chr2.4:1077911-1077930 | MS.gene067444:intron | 30.0% |
| !!! | AGTTTTGGATAACATGGATT+TGG | + | chr2.4:1077794-1077813 | None:intergenic | 30.0% |
| !!! | CCATTGTTTTAAACATGTCT+CGG | + | chr2.4:1076855-1076874 | None:intergenic | 30.0% |
| !!! | CGCAACATTTTGAAATTTAG+GGG | + | chr2.4:1075121-1075140 | None:intergenic | 30.0% |
| !!! | GCAACATTTTGAAATTTAGG+AGG | + | chr2.4:1075120-1075139 | None:intergenic | 30.0% |
| !!! | GCAACATTTTGAAATTTAGG+GGG | + | chr2.4:1075120-1075139 | None:intergenic | 30.0% |
| AAGAAGAGCAAAAAGACACT+AGG | - | chr2.4:1078060-1078079 | MS.gene067444:intron | 35.0% | |
| AATAAACTACAAGGCTGAGT+TGG | + | chr2.4:1077151-1077170 | None:intergenic | 35.0% | |
| AATCCTAAGTTTATGAGCTG+GGG | + | chr2.4:1077455-1077474 | None:intergenic | 35.0% | |
| ACCGATTAAGCAAGCTAAAA+AGG | - | chr2.4:1075817-1075836 | MS.gene067444:intron | 35.0% | |
| ATAAACTACAAGGCTGAGTT+GGG | + | chr2.4:1077150-1077169 | None:intergenic | 35.0% | |
| ATCAACAAACTAAGCTCACA+AGG | - | chr2.4:1076267-1076286 | MS.gene067444:intron | 35.0% | |
| ATCAACCACTGTATAGACTA+TGG | - | chr2.4:1077566-1077585 | MS.gene067444:intron | 35.0% | |
| ATGTAAACCATCAACAAACG+AGG | - | chr2.4:1077005-1077024 | MS.gene067444:intron | 35.0% | |
| CAAAAGGATTTGAGGATTGA+AGG | - | chr2.4:1074817-1074836 | MS.gene067444:intron | 35.0% | |
| CAATCCTAAGTTTATGAGCT+GGG | + | chr2.4:1077456-1077475 | None:intergenic | 35.0% | |
| CACCTTTGTGTAAAAGTCTA+TGG | - | chr2.4:1075348-1075367 | MS.gene067444:intron | 35.0% | |
| CAGAAAATGCATATGTTGCA+AGG | + | chr2.4:1078119-1078138 | None:intergenic | 35.0% | |
| CAGTATATATGTAAGATCCG+GGG | + | chr2.4:1076237-1076256 | None:intergenic | 35.0% | |
| CCGATTAAGCAAGCTAAAAA+GGG | - | chr2.4:1075818-1075837 | MS.gene067444:intron | 35.0% | |
| CCTTCAAAATCCAAAACTTG+AGG | - | chr2.4:1075301-1075320 | MS.gene067444:intron | 35.0% | |
| GAATTCTGATGCTATGATTG+TGG | - | chr2.4:1077328-1077347 | MS.gene067444:intron | 35.0% | |
| GATTCATGAGCTCATTTCTT+AGG | - | chr2.4:1077869-1077888 | MS.gene067444:intron | 35.0% | |
| GATTCGTTGCTCTAGTTATT+TGG | - | chr2.4:1077350-1077369 | MS.gene067444:intron | 35.0% | |
| GCAGTATATATGTAAGATCC+GGG | + | chr2.4:1076238-1076257 | None:intergenic | 35.0% | |
| GGTGCTTGGTTGTTTAATTA+TGG | + | chr2.4:1075283-1075302 | None:intergenic | 35.0% | |
| TAAAGACGCAATATTCGATC+TGG | - | chr2.4:1075678-1075697 | MS.gene067444:intron | 35.0% | |
| TCTTATCTCTTCTTTCAGAG+GGG | + | chr2.4:1077684-1077703 | None:intergenic | 35.0% | |
| TGCACTGTCTACATTTATCT+TGG | - | chr2.4:1077768-1077787 | MS.gene067444:intron | 35.0% | |
| TGGCACTAAACCATATTTCA+AGG | + | chr2.4:1075396-1075415 | None:intergenic | 35.0% | |
| TGGTGTTTGGTTATTCTCTT+CGG | - | chr2.4:1075420-1075439 | MS.gene067444:intron | 35.0% | |
| TTCATGAGCTCATTTCTTAG+GGG | - | chr2.4:1077871-1077890 | MS.gene067444:intron | 35.0% | |
| ! | AGTGATGAGAAAGCATACAA+TGG | + | chr2.4:1074681-1074700 | None:intergenic | 35.0% |
| ! | ATTCACCAAGTTAGTCTGTT+AGG | + | chr2.4:1077124-1077143 | None:intergenic | 35.0% |
| ! | CCGAGACATGTTTAAAACAA+TGG | - | chr2.4:1076852-1076871 | MS.gene067444:intron | 35.0% |
| ! | GATATTTGAGTGGTTGGTTA+AGG | - | chr2.4:1077950-1077969 | MS.gene067444:intron | 35.0% |
| ! | GTCACTATGCTTTTCAATCT+CGG | - | chr2.4:1074929-1074948 | MS.gene067444:intron | 35.0% |
| ! | GTCCATAGACTTTTACACAA+AGG | + | chr2.4:1075353-1075372 | None:intergenic | 35.0% |
| ! | GTGATGAGAAAGCATACAAT+GGG | + | chr2.4:1074680-1074699 | None:intergenic | 35.0% |
| ! | GTTTGTTAAGAAACCCCAAA+TGG | - | chr2.4:1076884-1076903 | MS.gene067444:intron | 35.0% |
| ! | TTAGTGCCATTAATGGTGTT+TGG | - | chr2.4:1075407-1075426 | MS.gene067444:intron | 35.0% |
| !! | AGACTTTTACACAAAGGTGT+TGG | + | chr2.4:1075347-1075366 | None:intergenic | 35.0% |
| !! | CGTTTGTTGATGGTTTACAT+TGG | + | chr2.4:1077005-1077024 | None:intergenic | 35.0% |
| !! | CTGTCTTATTTGTGGATGTT+AGG | - | chr2.4:1077498-1077517 | MS.gene067444:intron | 35.0% |
| !! | GTGAGCTTAGTTTGTTGATA+TGG | + | chr2.4:1076266-1076285 | None:intergenic | 35.0% |
| !! | GTTTTTCTTTTTTGTGGTGG+TGG | - | chr2.4:1076199-1076218 | MS.gene067444:intron | 35.0% |
| !! | TTATGGAGTTGGTATTCACT+TGG | + | chr2.4:1075266-1075285 | None:intergenic | 35.0% |
| !!! | ACTTTTACACAAAGGTGTTG+GGG | + | chr2.4:1075345-1075364 | None:intergenic | 35.0% |
| !!! | AGGATTGGTGGTTAGTTTTT+GGG | - | chr2.4:1077469-1077488 | MS.gene067444:intron | 35.0% |
| !!! | ATGGCATGTTTTAGAATAGG+AGG | - | chr2.4:1074896-1074915 | MS.gene067444:CDS | 35.0% |
| !!! | CAATAAGCTGTTTTTGCATG+CGG | - | chr2.4:1075728-1075747 | MS.gene067444:intron | 35.0% |
| !!! | CCCTTTTTAGCTTGCTTAAT+CGG | + | chr2.4:1075821-1075840 | None:intergenic | 35.0% |
| !!! | CCTCAAGTTTTGGATTTTGA+AGG | + | chr2.4:1075304-1075323 | None:intergenic | 35.0% |
| !!! | GACTTTTACACAAAGGTGTT+GGG | + | chr2.4:1075346-1075365 | None:intergenic | 35.0% |
| !!! | GATTTGGCTTTTTGAGCAAA+AGG | - | chr2.4:1074801-1074820 | MS.gene067444:intron | 35.0% |
| !!! | TAGGATTGGTGGTTAGTTTT+TGG | - | chr2.4:1077468-1077487 | MS.gene067444:intron | 35.0% |
| !!! | TGTTATTGTTTTGATCAGGG+AGG | - | chr2.4:1078144-1078163 | MS.gene067444:CDS | 35.0% |
| !!! | TTTTGGATTTTGAAGGTGCT+TGG | + | chr2.4:1075297-1075316 | None:intergenic | 35.0% |
| AAATGAATGATGGTTGGACG+AGG | + | chr2.4:1077199-1077218 | None:intergenic | 40.0% | |
| AAATGCATGGATTTGACACG+TGG | - | chr2.4:1075609-1075628 | MS.gene067444:intron | 40.0% | |
| AACCACTGTATAGACTATGG+AGG | - | chr2.4:1077569-1077588 | MS.gene067444:intron | 40.0% | |
| AGGCAATTTGTGTTCCTCTT+TGG | - | chr2.4:1075234-1075253 | MS.gene067444:intron | 40.0% | |
| ATTGATGGGGTGGTGAAAAT+GGG | - | chr2.4:1075577-1075596 | MS.gene067444:intron | 40.0% | |
| CCAATCCTAAGTTTATGAGC+TGG | + | chr2.4:1077457-1077476 | None:intergenic | 40.0% | |
| CCAGCTCATAAACTTAGGAT+TGG | - | chr2.4:1077454-1077473 | MS.gene067444:intron | 40.0% | |
| GACTTGGCGAATAAACTACA+AGG | + | chr2.4:1077160-1077179 | None:intergenic | 40.0% | |
| GAGTGCTACAACTGTAAGAT+AGG | + | chr2.4:1076958-1076977 | None:intergenic | 40.0% | |
| GATTTCTTCAAAGCAAAGCG+CGG | - | chr2.4:1074773-1074792 | MS.gene067444:intron | 40.0% | |
| GCTCATAAACTTAGGATTGG+TGG | - | chr2.4:1077457-1077476 | MS.gene067444:intron | 40.0% | |
| GTATACGTGTGTGAATGTGT+TGG | - | chr2.4:1075654-1075673 | MS.gene067444:intron | 40.0% | |
| TAAACCATCAACAAACGAGG+TGG | - | chr2.4:1077008-1077027 | MS.gene067444:intron | 40.0% | |
| TAAGTTATGCTGGGAGCTAT+GGG | + | chr2.4:1077054-1077073 | None:intergenic | 40.0% | |
| TATTGATGGGGTGGTGAAAA+TGG | - | chr2.4:1075576-1075595 | MS.gene067444:intron | 40.0% | |
| TCATGTGCCTCAATAACTCT+AGG | - | chr2.4:1074968-1074987 | MS.gene067444:intron | 40.0% | |
| TGAATAAGCCCATTATTGCG+AGG | - | chr2.4:1077093-1077112 | MS.gene067444:intron | 40.0% | |
| TGGGAAAGAGGAAAAATGCA+TGG | - | chr2.4:1075596-1075615 | MS.gene067444:intron | 40.0% | |
| TTAAGTTATGCTGGGAGCTA+TGG | + | chr2.4:1077055-1077074 | None:intergenic | 40.0% | |
| TTGCACCTAACAGACTAACT+TGG | - | chr2.4:1077116-1077135 | MS.gene067444:intron | 40.0% | |
| ! | AAAAGGGTATATTGATGGGG+TGG | - | chr2.4:1075567-1075586 | MS.gene067444:intron | 40.0% |
| ! | ATTCTGATTCTGGTTAGACC+AGG | - | chr2.4:1077373-1077392 | MS.gene067444:intron | 40.0% |
| ! | CAATACAAGGCATTACCCTT+CGG | + | chr2.4:1076922-1076941 | None:intergenic | 40.0% |
| ! | CTCTGCATAGCCTTGAAATA+TGG | - | chr2.4:1075383-1075402 | MS.gene067444:intron | 40.0% |
| ! | GAGAAAGCATACAATGGGTT+GGG | + | chr2.4:1074675-1074694 | None:intergenic | 40.0% |
| ! | TGAACATGTCTGGAGCATAA+TGG | - | chr2.4:1075066-1075085 | MS.gene067444:intron | 40.0% |
| ! | TGAGAAAGCATACAATGGGT+TGG | + | chr2.4:1074676-1074695 | None:intergenic | 40.0% |
| !!! | GGATTGGTGGTTAGTTTTTG+GGG | - | chr2.4:1077470-1077489 | MS.gene067444:intron | 40.0% |
| !!! | TGGGGTTTGTTTTGATTGAG+AGG | + | chr2.4:1075327-1075346 | None:intergenic | 40.0% |
| AAGGCTATGCAGAGATGTGA+AGG | + | chr2.4:1075377-1075396 | None:intergenic | 45.0% | |
| AAGTTATGCTGGGAGCTATG+GGG | + | chr2.4:1077053-1077072 | None:intergenic | 45.0% | |
| ACCTGATGCTCAACATGACT+TGG | + | chr2.4:1075212-1075231 | None:intergenic | 45.0% | |
| AGGTGCAACCTCGCAATAAT+GGG | + | chr2.4:1077104-1077123 | None:intergenic | 45.0% | |
| CAAAAGACAGGTTCACAACC+TGG | + | chr2.4:1077283-1077302 | None:intergenic | 45.0% | |
| CTAAGTTTATGAGCTGGGGT+GGG | + | chr2.4:1077451-1077470 | None:intergenic | 45.0% | |
| GATGGTTTACATTGGGCTGT+TGG | + | chr2.4:1076997-1077016 | None:intergenic | 45.0% | |
| GCTCATATTAACCGCATCTG+TGG | - | chr2.4:1075784-1075803 | MS.gene067444:intron | 45.0% | |
| GGTCATGACCCTTTGAACTT+TGG | + | chr2.4:1074654-1074673 | None:intergenic | 45.0% | |
| TAGCTAGATTCACGAGCTTG+AGG | - | chr2.4:1075038-1075057 | MS.gene067444:intron | 45.0% | |
| TAGGTGCAACCTCGCAATAA+TGG | + | chr2.4:1077105-1077124 | None:intergenic | 45.0% | |
| TCAGGGAGGATCCTTCTTAA+AGG | - | chr2.4:1078158-1078177 | MS.gene067444:CDS | 45.0% | |
| TCATGTTGAGCATCAGGTGA+AGG | - | chr2.4:1075214-1075233 | MS.gene067444:intron | 45.0% | |
| TCCAAGTCATGTTGAGCATC+AGG | - | chr2.4:1075208-1075227 | MS.gene067444:intron | 45.0% | |
| TGAGGACGATTGAACATGTC+TGG | - | chr2.4:1075056-1075075 | MS.gene067444:intron | 45.0% | |
| TGCCTCCATAGTCTATACAG+TGG | + | chr2.4:1077574-1077593 | None:intergenic | 45.0% | |
| TTATGCTGTTGTTGTGTGCC+AGG | - | chr2.4:1077262-1077281 | MS.gene067444:intron | 45.0% | |
| ! | ACATCCACCTCGTTTGTTGA+TGG | + | chr2.4:1077015-1077034 | None:intergenic | 45.0% |
| ! | CAGGTTGTGAACCTGTCTTT+TGG | - | chr2.4:1077281-1077300 | MS.gene067444:intron | 45.0% |
| ! | GATTGAGAGGCCTCAAGTTT+TGG | + | chr2.4:1075314-1075333 | None:intergenic | 45.0% |
| !! | GGGTTCAGCTGTCTTATTTG+TGG | - | chr2.4:1077490-1077509 | MS.gene067444:intron | 45.0% |
| !!! | TTCTTTTTTGTGGTGGTGGC+CGG | - | chr2.4:1076203-1076222 | MS.gene067444:intron | 45.0% |
| !! | AATATATACTATATATAAAA+AGG | + | chr2.4:1076359-1076378 | None:intergenic | 5.0% |
| !!! | AAAATTTTGATTAAAATTAT+AGG | - | chr2.4:1076013-1076032 | MS.gene067444:intron | 5.0% |
| AACGAGGTGGATGTGTTGTC+TGG | - | chr2.4:1077021-1077040 | MS.gene067444:intron | 50.0% | |
| ATTCGCCAAGTCAGCCTGTT+AGG | - | chr2.4:1077168-1077187 | MS.gene067444:intron | 50.0% | |
| CCACCCCAGCTCATAAACTT+AGG | - | chr2.4:1077449-1077468 | MS.gene067444:intron | 50.0% | |
| CCTAAGTTTATGAGCTGGGG+TGG | + | chr2.4:1077452-1077471 | None:intergenic | 50.0% | |
| CGCAATATTCGATCTGGACG+AGG | - | chr2.4:1075684-1075703 | MS.gene067444:intron | 50.0% | |
| GAGCTAGATTCACGAGCTTG+AGG | - | chr2.4:1076665-1076684 | MS.gene067444:intron | 50.0% | |
| GCAAAGCGCGGATTCAGATT+TGG | - | chr2.4:1074785-1074804 | MS.gene067444:intron | 50.0% | |
| GGCGAGCACCAAAGTTCAAA+GGG | - | chr2.4:1074643-1074662 | MS.gene067444:intron | 50.0% | |
| GGGTGGTGAAAATGGGAAAG+AGG | - | chr2.4:1075584-1075603 | MS.gene067444:intron | 50.0% | |
| TAGTCTGGTCTGGTTAGACC+AGG | - | chr2.4:1077412-1077431 | MS.gene067444:intron | 50.0% | |
| TGGCGAGCACCAAAGTTCAA+AGG | - | chr2.4:1074642-1074661 | MS.gene067444:intron | 50.0% | |
| TGGGCTGTTGGATGCATACA+TGG | + | chr2.4:1076985-1077004 | None:intergenic | 50.0% | |
| TTGCACCTAACAGGCTGACT+TGG | + | chr2.4:1077176-1077195 | None:intergenic | 50.0% | |
| ! | GCTCGTGAATCTAGCTCAAG+AGG | + | chr2.4:1076662-1076681 | None:intergenic | 50.0% |
| ! | GCTGTTGCATCTGCCATTTG+GGG | + | chr2.4:1076900-1076919 | None:intergenic | 50.0% |
| ! | GGCTGTTGCATCTGCCATTT+GGG | + | chr2.4:1076901-1076920 | None:intergenic | 50.0% |
| !! | TCACTTGGTGCAGTCCAAAG+AGG | + | chr2.4:1075251-1075270 | None:intergenic | 50.0% |
| !!! | TCTTTTTTGTGGTGGTGGCC+GGG | - | chr2.4:1076204-1076223 | MS.gene067444:intron | 50.0% |
| AACCGCATCTGTGGCAGTGA+TGG | - | chr2.4:1075793-1075812 | MS.gene067444:intron | 55.0% | |
| AGACCAGACTAGAGCAGACC+TGG | + | chr2.4:1077403-1077422 | None:intergenic | 55.0% | |
| AGGTCTGCTCTAGTCTGGTC+TGG | - | chr2.4:1077402-1077421 | MS.gene067444:intron | 55.0% | |
| ATGGCAGATGCAACAGCCGA+AGG | - | chr2.4:1076903-1076922 | MS.gene067444:intron | 55.0% | |
| CGGCTGTTGCATCTGCCATT+TGG | + | chr2.4:1076902-1076921 | None:intergenic | 55.0% | |
| TCGATCTGGACGAGGTTGCT+TGG | - | chr2.4:1075692-1075711 | MS.gene067444:intron | 55.0% | |
| TGCCATCACTGCCACAGATG+CGG | + | chr2.4:1075798-1075817 | None:intergenic | 55.0% | |
| TGGACGAGGTTGCACCTAAC+AGG | + | chr2.4:1077185-1077204 | None:intergenic | 55.0% | |
| TGGCAGATGCAACAGCCGAA+GGG | - | chr2.4:1076904-1076923 | MS.gene067444:intron | 55.0% | |
| !!! | CTTTTTTGTGGTGGTGGCCG+GGG | - | chr2.4:1076205-1076224 | MS.gene067444:intron | 55.0% |
| CAGACTAGAGCAGACCTGGC+TGG | + | chr2.4:1077399-1077418 | None:intergenic | 60.0% | |
| CAGCCAGGTCTGCTCTAGTC+TGG | - | chr2.4:1077397-1077416 | MS.gene067444:intron | 60.0% | |
| AAGATCCGGGGTCCGAACCC+CGG | + | chr2.4:1076225-1076244 | None:intergenic | 65.0% | |
| CTGGTTAGACCAGGCCAGCC+AGG | - | chr2.4:1077382-1077401 | MS.gene067444:intron | 65.0% | |
| ! | TAGAGCAGACCTGGCTGGCC+TGG | + | chr2.4:1077394-1077413 | None:intergenic | 65.0% |
| !! | TTGTGGTGGTGGCCGGGGTT+CGG | - | chr2.4:1076210-1076229 | MS.gene067444:intron | 65.0% |
| TGAGCTGGGGTGGGCAGACG+TGG | + | chr2.4:1077442-1077461 | None:intergenic | 70.0% | |
| CTGGGGTGGGCAGACGTGGC+TGG | + | chr2.4:1077438-1077457 | None:intergenic | 75.0% | |
| ! | GTGGGCAGACGTGGCTGGCC+TGG | + | chr2.4:1077433-1077452 | None:intergenic | 75.0% |
| ! | GGTGGCCGGGGTTCGGACCC+CGG | - | chr2.4:1076217-1076236 | MS.gene067444:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 1074641 | 1078306 | 1074641 | ID=MS.gene067444 |
| chr2.4 | mRNA | 1074641 | 1078306 | 1074641 | ID=MS.gene067444.t1;Parent=MS.gene067444 |
| chr2.4 | exon | 1078265 | 1078306 | 1078265 | ID=MS.gene067444.t1.exon1;Parent=MS.gene067444.t1 |
| chr2.4 | CDS | 1078265 | 1078306 | 1078265 | ID=cds.MS.gene067444.t1;Parent=MS.gene067444.t1 |
| chr2.4 | exon | 1078098 | 1078187 | 1078098 | ID=MS.gene067444.t1.exon2;Parent=MS.gene067444.t1 |
| chr2.4 | CDS | 1078098 | 1078187 | 1078098 | ID=cds.MS.gene067444.t1;Parent=MS.gene067444.t1 |
| chr2.4 | exon | 1074866 | 1074944 | 1074866 | ID=MS.gene067444.t1.exon3;Parent=MS.gene067444.t1 |
| chr2.4 | CDS | 1074866 | 1074944 | 1074866 | ID=cds.MS.gene067444.t1;Parent=MS.gene067444.t1 |
| chr2.4 | exon | 1074740 | 1074785 | 1074740 | ID=MS.gene067444.t1.exon4;Parent=MS.gene067444.t1 |
| chr2.4 | CDS | 1074740 | 1074785 | 1074740 | ID=cds.MS.gene067444.t1;Parent=MS.gene067444.t1 |
| chr2.4 | exon | 1074641 | 1074650 | 1074641 | ID=MS.gene067444.t1.exon5;Parent=MS.gene067444.t1 |
| chr2.4 | CDS | 1074641 | 1074650 | 1074641 | ID=cds.MS.gene067444.t1;Parent=MS.gene067444.t1 |
| Gene Sequence |
| Protein sequence |
