Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85931.t1 | XP_003597961.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.40E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85931.t1 | A4FUI2 | 72.8 | 81 | 22 | 0 | 5 | 85 | 9 | 89 | 4.8e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85931.t1 | G7IMA2 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.0e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85931.t1 | MTR_5g072530 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| MS.gene85931.t1 | MTR_2g104440 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85931.t1 | AT4G30330 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 4.45e-55 | 165 |
| MS.gene85931.t1 | AT2G18740 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 5.93e-55 | 165 |
| MS.gene85931.t1 | AT2G18740 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 2.53e-42 | 133 |
Find 13 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATACATGAATTTGGTTT+TGG | 0.297744 | 2.1:-1391980 | MS.gene85931:CDS |
| TCAGGGAGGATCCTTCTTAA+AGG | 0.324647 | 2.1:-1391833 | MS.gene85931:intron |
| GCAAAGCGCGGATTCAGATT+TGG | 0.362553 | 2.1:-1395185 | MS.gene85931:CDS |
| CAAAAGGATTTGAGGATTGA+AGG | 0.404712 | 2.1:-1395153 | MS.gene85931:CDS |
| GGTCATGACCCTTTGAACTT+TGG | 0.450628 | 2.1:+1395320 | None:intergenic |
| TTATGTTGTCTCCTTTAAGA+AGG | 0.459912 | 2.1:+1391822 | None:intergenic |
| ACAAATTTCAGGGGTAAATG+AGG | 0.483171 | 2.1:-1391705 | None:intergenic |
| GAGAAAGCATACAATGGGTT+GGG | 0.488064 | 2.1:+1395299 | None:intergenic |
| GGCGAGCACCAAAGTTCAAA+GGG | 0.524848 | 2.1:-1395328 | MS.gene85931:CDS |
| TTGAACTTTGGTGCTCGCCA+TGG | 0.529943 | 2.1:+1395332 | None:intergenic |
| TGAGAAAGCATACAATGGGT+TGG | 0.551589 | 2.1:+1395298 | None:intergenic |
| TGGCGAGCACCAAAGTTCAA+AGG | 0.558128 | 2.1:-1395329 | MS.gene85931:CDS |
| GATTTCTTCAAAGCAAAGCG+CGG | 0.674013 | 2.1:-1395197 | MS.gene85931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATCATTGTTTTTTA+TGG | - | chr2.1:1391942-1391961 | MS.gene85931:CDS | 10.0% |
| !!! | TTTTCTTTTTGTTATAAATA+GGG | - | chr2.1:1395028-1395047 | MS.gene85931:intron | 10.0% |
| !!! | TTTTTAGATTTTTAATGAAT+TGG | - | chr2.1:1392928-1392947 | MS.gene85931:intron | 10.0% |
| !!! | TTTTTCTTTTTGTTATAAAT+AGG | - | chr2.1:1395027-1395046 | MS.gene85931:intron | 10.0% |
| !! | AAGAATTAAATATTAGAAGT+TGG | + | chr2.1:1392958-1392977 | None:intergenic | 15.0% |
| !! | AGAATTAAATATTAGAAGTT+GGG | + | chr2.1:1392957-1392976 | None:intergenic | 15.0% |
| !! | CTATATATAAAAAGGATATA+TGG | + | chr2.1:1393416-1393435 | None:intergenic | 15.0% |
| !!! | CTTGTTATTCATATAAAAAA+GGG | - | chr2.1:1392616-1392635 | MS.gene85931:intron | 15.0% |
| !!! | TCTTGTTATTCATATAAAAA+AGG | - | chr2.1:1392615-1392634 | MS.gene85931:intron | 15.0% |
| !! | AAATTAATAAACCAAAAGAC+AGG | + | chr2.1:1394349-1394368 | None:intergenic | 20.0% |
| !! | AACTTTAATACTAACTTGAA+AGG | - | chr2.1:1394666-1394685 | MS.gene85931:intron | 20.0% |
| !! | ATTTGTAAATTAAGTTATGC+TGG | + | chr2.1:1394118-1394137 | None:intergenic | 20.0% |
| !! | GAATTAAATATTAGAAGTTG+GGG | + | chr2.1:1392956-1392975 | None:intergenic | 20.0% |
| !! | TTGTTAAAGAGAAATTGAAA+GGG | + | chr2.1:1391776-1391795 | None:intergenic | 20.0% |
| !! | TTTGTAAATTAAGTTATGCT+GGG | + | chr2.1:1394117-1394136 | None:intergenic | 20.0% |
| !!! | AAGTTCTGAGAAAAAAAAAA+CGG | + | chr2.1:1391812-1391831 | None:intergenic | 20.0% |
| !!! | ATAAAAAAGGGTATATTGAT+GGG | - | chr2.1:1392628-1392647 | MS.gene85931:intron | 20.0% |
| !!! | ATGCTAGTTTCTAATAAAAA+AGG | + | chr2.1:1393004-1393023 | None:intergenic | 20.0% |
| !!! | ATTTGCTTTTACAAATTTCA+GGG | - | chr2.1:1395322-1395341 | MS.gene85931:CDS | 20.0% |
| !!! | CCTAAAAAAATTTGTTTCTT+GGG | + | chr2.1:1392830-1392849 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGGGTATATTGA+TGG | - | chr2.1:1392627-1392646 | MS.gene85931:intron | 20.0% |
| !!! | TGAATCTAGCTAATTTTATA+GGG | + | chr2.1:1393834-1393853 | None:intergenic | 20.0% |
| !!! | TGCTAGTTTCTAATAAAAAA+GGG | + | chr2.1:1393003-1393022 | None:intergenic | 20.0% |
| !!! | TTAGATCTTATTTTCAGTTA+AGG | + | chr2.1:1393494-1393513 | None:intergenic | 20.0% |
| !!! | TTCAAGTTAGTATTAAAGTT+AGG | + | chr2.1:1394666-1394685 | None:intergenic | 20.0% |
| !!! | TTTTGATGAATACATGAATT+TGG | - | chr2.1:1395051-1395070 | MS.gene85931:intron | 20.0% |
| ! | AAAAGAGGAGAAAAATGAAA+AGG | + | chr2.1:1392526-1392545 | None:intergenic | 25.0% |
| ! | AAGTGTAATATTTCTTAGAG+AGG | + | chr2.1:1394789-1394808 | None:intergenic | 25.0% |
| ! | AATGAAAAGGAAAGAGATAA+AGG | + | chr2.1:1392513-1392532 | None:intergenic | 25.0% |
| ! | AATGATATATGATTGTCTTG+AGG | - | chr2.1:1392249-1392268 | MS.gene85931:intron | 25.0% |
| ! | AGAAAAAAAAAACGGAGATT+AGG | + | chr2.1:1391804-1391823 | None:intergenic | 25.0% |
| ! | AGACAATCATATATCATTTC+AGG | + | chr2.1:1392247-1392266 | None:intergenic | 25.0% |
| ! | AGTTACTAGAAAATGAATGA+TGG | + | chr2.1:1394263-1394282 | None:intergenic | 25.0% |
| ! | GATGTTCTTGTATGAAAAAT+GGG | - | chr2.1:1393686-1393705 | MS.gene85931:intron | 25.0% |
| ! | GTTGTTAAAGAGAAATTGAA+AGG | + | chr2.1:1391777-1391796 | None:intergenic | 25.0% |
| ! | TGATGTTCTTGTATGAAAAA+TGG | - | chr2.1:1393685-1393704 | MS.gene85931:intron | 25.0% |
| !! | AATCTAGCTAATTTTATAGG+GGG | + | chr2.1:1393832-1393851 | None:intergenic | 25.0% |
| !! | AGGTTTTCAGTTATTTAGAT+CGG | + | chr2.1:1393474-1393493 | None:intergenic | 25.0% |
| !! | ATTTCAAAATGTTGCGATTT+TGG | - | chr2.1:1392190-1392209 | MS.gene85931:intron | 25.0% |
| !! | GAATCTAGCTAATTTTATAG+GGG | + | chr2.1:1393833-1393852 | None:intergenic | 25.0% |
| !! | GAGATTCAAATTCAAAGTTT+TGG | + | chr2.1:1394860-1394879 | None:intergenic | 25.0% |
| !! | GCCTAAAAAAATTTGTTTCT+TGG | + | chr2.1:1392831-1392850 | None:intergenic | 25.0% |
| !! | GTGAATCTAGCTAATTTTAT+AGG | + | chr2.1:1393835-1393854 | None:intergenic | 25.0% |
| !! | TAAAAAAGGGTATATTGATG+GGG | - | chr2.1:1392629-1392648 | MS.gene85931:intron | 25.0% |
| !! | TGAATCTAGCTAATTTTACA+TGG | + | chr2.1:1392095-1392114 | None:intergenic | 25.0% |
| !!! | AAATGTTTGCTTCTTGTTTT+TGG | - | chr2.1:1394946-1394965 | MS.gene85931:intron | 25.0% |
| !!! | ATCGCAACATTTTGAAATTT+AGG | + | chr2.1:1392188-1392207 | None:intergenic | 25.0% |
| !!! | ATCGGTTTGTCATTTTAATT+TGG | + | chr2.1:1393456-1393475 | None:intergenic | 25.0% |
| !!! | ATGATGTTATTGTTTTGATC+AGG | - | chr2.1:1395186-1395205 | MS.gene85931:CDS | 25.0% |
| !!! | ATTCAAAGTTTTGGATAACA+TGG | + | chr2.1:1394851-1394870 | None:intergenic | 25.0% |
| !!! | CCCAAGAAACAAATTTTTTT+AGG | - | chr2.1:1392827-1392846 | MS.gene85931:intron | 25.0% |
| !!! | GATTTGCTTTTACAAATTTC+AGG | - | chr2.1:1395321-1395340 | MS.gene85931:CDS | 25.0% |
| !!! | GCATTTTCATCTATTTCTAT+GGG | - | chr2.1:1395272-1395291 | MS.gene85931:intron | 25.0% |
| !!! | TCGCAACATTTTGAAATTTA+GGG | + | chr2.1:1392187-1392206 | None:intergenic | 25.0% |
| !!! | TGAATACATGAATTTGGTTT+TGG | - | chr2.1:1395057-1395076 | MS.gene85931:intron | 25.0% |
| !!! | TGATGTTATTGTTTTGATCA+GGG | - | chr2.1:1395187-1395206 | MS.gene85931:CDS | 25.0% |
| !!! | TGCATTTTCATCTATTTCTA+TGG | - | chr2.1:1395271-1395290 | MS.gene85931:intron | 25.0% |
| !!! | TGTTGTATTTGCTATATTGT+TGG | + | chr2.1:1393161-1393180 | None:intergenic | 25.0% |
| !!! | TTGTCTGTTTTTCTTTTTTG+TGG | - | chr2.1:1393257-1393276 | MS.gene85931:intron | 25.0% |
| !!! | TTTATGGCATGTTTTAGAAT+AGG | - | chr2.1:1391958-1391977 | MS.gene85931:CDS | 25.0% |
| !!! | TTTGCTTTTACAAATTTCAG+GGG | - | chr2.1:1395323-1395342 | MS.gene85931:CDS | 25.0% |
| AAATTGGATATTTGAGTGGT+TGG | - | chr2.1:1394990-1395009 | MS.gene85931:intron | 30.0% | |
| AAGAAACAGTGACAAAAAAG+AGG | + | chr2.1:1392541-1392560 | None:intergenic | 30.0% | |
| AATTTCAGATCATCTCTTCT+AGG | + | chr2.1:1394594-1394613 | None:intergenic | 30.0% | |
| ACTAGAAAATGAATGATGGT+TGG | + | chr2.1:1394259-1394278 | None:intergenic | 30.0% | |
| ACTCAAATTGGATATTTGAG+TGG | - | chr2.1:1394986-1395005 | MS.gene85931:intron | 30.0% | |
| AGTTATTTGGATTCTGATTC+TGG | - | chr2.1:1394417-1394436 | MS.gene85931:intron | 30.0% | |
| ATACGTAGGTATATGATGTT+TGG | + | chr2.1:1393624-1393643 | None:intergenic | 30.0% | |
| ATTCATGAGCTCATTTCTTA+GGG | - | chr2.1:1394921-1394940 | MS.gene85931:intron | 30.0% | |
| CATACTAGTACAAAATACGT+AGG | + | chr2.1:1393638-1393657 | None:intergenic | 30.0% | |
| GAAACAAGAGATTAAAGAAG+AGG | + | chr2.1:1392565-1392584 | None:intergenic | 30.0% | |
| GAATAACCAAACACCATTAA+TGG | + | chr2.1:1392481-1392500 | None:intergenic | 30.0% | |
| GAATTTCGTATTTCAAACTG+AGG | - | chr2.1:1394688-1394707 | MS.gene85931:intron | 30.0% | |
| GCAATAAAAATGACGAACAA+GGG | + | chr2.1:1393030-1393049 | None:intergenic | 30.0% | |
| GGAGCATAATGGTTATTTAT+TGG | - | chr2.1:1392142-1392161 | MS.gene85931:intron | 30.0% | |
| TGCAATAAAAATGACGAACA+AGG | + | chr2.1:1393031-1393050 | None:intergenic | 30.0% | |
| TGCAGTATATATGTAAGATC+CGG | + | chr2.1:1393303-1393322 | None:intergenic | 30.0% | |
| TGGTTGTTTAATTATGGAGT+TGG | + | chr2.1:1392342-1392361 | None:intergenic | 30.0% | |
| TTCCAAATCGATAAACTACA+AGG | + | chr2.1:1394291-1394310 | None:intergenic | 30.0% | |
| TTCTTATCTCTTCTTTCAGA+GGG | + | chr2.1:1394736-1394755 | None:intergenic | 30.0% | |
| TTTCTTATCTCTTCTTTCAG+AGG | + | chr2.1:1394737-1394756 | None:intergenic | 30.0% | |
| TTTGATACCTAGAGTTATTG+AGG | + | chr2.1:1392043-1392062 | None:intergenic | 30.0% | |
| TTTGTCTCTTTCAACAGTTT+AGG | - | chr2.1:1394881-1394900 | MS.gene85931:intron | 30.0% | |
| ! | AACCTTGTAGTTTATCGATT+TGG | - | chr2.1:1394286-1394305 | MS.gene85931:intron | 30.0% |
| ! | ATAGTGTTTTGCACAATACA+AGG | + | chr2.1:1393989-1394008 | None:intergenic | 30.0% |
| ! | ATATGGTTTAGTGCCATTAA+TGG | - | chr2.1:1392465-1392484 | MS.gene85931:intron | 30.0% |
| ! | TTATGTTGTCTCCTTTAAGA+AGG | + | chr2.1:1395218-1395237 | None:intergenic | 30.0% |
| !! | ACGTGTGTGAAAGTTTTAAT+AGG | + | chr2.1:1392219-1392238 | None:intergenic | 30.0% |
| !! | CGTGTGTGAAAGTTTTAATA+GGG | + | chr2.1:1392218-1392237 | None:intergenic | 30.0% |
| !! | GTGTGTGAAAGTTTTAATAG+GGG | + | chr2.1:1392217-1392236 | None:intergenic | 30.0% |
| !! | GTTTGTTGATGGTTTACATT+GGG | + | chr2.1:1394058-1394077 | None:intergenic | 30.0% |
| !! | TCTGTTTTTCTTTTTTGTGG+TGG | - | chr2.1:1393260-1393279 | MS.gene85931:intron | 30.0% |
| !! | TGTCTTATTTGTGGATGTTA+GGG | - | chr2.1:1394550-1394569 | MS.gene85931:intron | 30.0% |
| !! | TGTGTGAAAGTTTTAATAGG+GGG | + | chr2.1:1392216-1392235 | None:intergenic | 30.0% |
| !! | TTTTTGAGCAAAAGGATTTG+AGG | - | chr2.1:1391876-1391895 | MS.gene85931:intron | 30.0% |
| !! | TTTTTGGTATAGAGTGTACA+TGG | - | chr2.1:1394962-1394981 | MS.gene85931:intron | 30.0% |
| !!! | ACTTAGGATTGGTTAGTTTT+TGG | - | chr2.1:1394519-1394538 | MS.gene85931:intron | 30.0% |
| !!! | AGTTTTGGATAACATGGATT+TGG | + | chr2.1:1394845-1394864 | None:intergenic | 30.0% |
| !!! | CCATTGTTTTAAACATGTCT+CGG | + | chr2.1:1393909-1393928 | None:intergenic | 30.0% |
| !!! | CGCAACATTTTGAAATTTAG+GGG | + | chr2.1:1392186-1392205 | None:intergenic | 30.0% |
| !!! | CTTAGGATTGGTTAGTTTTT+GGG | - | chr2.1:1394520-1394539 | MS.gene85931:intron | 30.0% |
| !!! | GCAACATTTTGAAATTTAGG+GGG | + | chr2.1:1392185-1392204 | None:intergenic | 30.0% |
| !!! | TTAGGATTGGTTAGTTTTTG+GGG | - | chr2.1:1394521-1394540 | MS.gene85931:intron | 30.0% |
| AAGAAGAGCAAAAAGACACT+AGG | - | chr2.1:1395106-1395125 | MS.gene85931:intron | 35.0% | |
| AATAAACTACAAGGCTGAGT+TGG | + | chr2.1:1394205-1394224 | None:intergenic | 35.0% | |
| AATCCTAAGTTTATGAGCTG+GGG | + | chr2.1:1394509-1394528 | None:intergenic | 35.0% | |
| ACCGATTAAGCAAGCTAAAA+AGG | - | chr2.1:1392882-1392901 | MS.gene85931:intron | 35.0% | |
| AGTGTACATGGTACTCAAAT+TGG | - | chr2.1:1394974-1394993 | MS.gene85931:intron | 35.0% | |
| ATAAACTACAAGGCTGAGTT+GGG | + | chr2.1:1394204-1394223 | None:intergenic | 35.0% | |
| ATCAACCACTGTATAGACTA+TGG | - | chr2.1:1394617-1394636 | MS.gene85931:intron | 35.0% | |
| ATGTAAACCATCAACAAACG+AGG | - | chr2.1:1394059-1394078 | MS.gene85931:intron | 35.0% | |
| CAAAAGGATTTGAGGATTGA+AGG | - | chr2.1:1391884-1391903 | MS.gene85931:intron | 35.0% | |
| CAATCCTAAGTTTATGAGCT+GGG | + | chr2.1:1394510-1394529 | None:intergenic | 35.0% | |
| CACCTTTGTGTAAAAGTCTA+TGG | - | chr2.1:1392413-1392432 | MS.gene85931:intron | 35.0% | |
| CAGAAAATGCATATGTTGCA+AGG | + | chr2.1:1395165-1395184 | None:intergenic | 35.0% | |
| CAGTATATATGTAAGATCCG+GGG | + | chr2.1:1393301-1393320 | None:intergenic | 35.0% | |
| CCGATTAAGCAAGCTAAAAA+GGG | - | chr2.1:1392883-1392902 | MS.gene85931:intron | 35.0% | |
| CCTTCAAAATCCAAAACTTG+AGG | - | chr2.1:1392366-1392385 | MS.gene85931:intron | 35.0% | |
| GAATTCTGATGCTATGATTG+TGG | - | chr2.1:1394382-1394401 | MS.gene85931:intron | 35.0% | |
| GATAGACAAATAACTGCAAC+AGG | + | chr2.1:1394764-1394783 | None:intergenic | 35.0% | |
| GATTCATGAGCTCATTTCTT+AGG | - | chr2.1:1394920-1394939 | MS.gene85931:intron | 35.0% | |
| GATTCGTTGCTCTAGTTATT+TGG | - | chr2.1:1394404-1394423 | MS.gene85931:intron | 35.0% | |
| GCAGTATATATGTAAGATCC+GGG | + | chr2.1:1393302-1393321 | None:intergenic | 35.0% | |
| GGTGCTTGGTTGTTTAATTA+TGG | + | chr2.1:1392348-1392367 | None:intergenic | 35.0% | |
| TAAAGACGCAATATTCGATC+TGG | - | chr2.1:1392743-1392762 | MS.gene85931:intron | 35.0% | |
| TCTGCATTGTCATTCTATTG+CGG | - | chr2.1:1392583-1392602 | MS.gene85931:intron | 35.0% | |
| TCTTATCTCTTCTTTCAGAG+GGG | + | chr2.1:1394735-1394754 | None:intergenic | 35.0% | |
| TGCACTGTCTACATTTATCT+TGG | - | chr2.1:1394819-1394838 | MS.gene85931:intron | 35.0% | |
| TGGCACTAAACCATATTTCA+AGG | + | chr2.1:1392461-1392480 | None:intergenic | 35.0% | |
| TGGTGTTTGGTTATTCTCTT+CGG | - | chr2.1:1392485-1392504 | MS.gene85931:intron | 35.0% | |
| TTCATGAGCTCATTTCTTAG+GGG | - | chr2.1:1394922-1394941 | MS.gene85931:intron | 35.0% | |
| ! | AGTGATGAGAAAGCATACAA+TGG | + | chr2.1:1391747-1391766 | None:intergenic | 35.0% |
| ! | ATTCACCAAGTTAGTCTGTT+AGG | + | chr2.1:1394178-1394197 | None:intergenic | 35.0% |
| ! | CCGAGACATGTTTAAAACAA+TGG | - | chr2.1:1393906-1393925 | MS.gene85931:intron | 35.0% |
| ! | GATATTTGAGTGGTTGGTTA+AGG | - | chr2.1:1394996-1395015 | MS.gene85931:intron | 35.0% |
| ! | GTCACTATGCTTTTCAATCT+CGG | - | chr2.1:1391994-1392013 | MS.gene85931:intron | 35.0% |
| ! | GTCCATAGACTTTTACACAA+AGG | + | chr2.1:1392418-1392437 | None:intergenic | 35.0% |
| ! | GTGATGAGAAAGCATACAAT+GGG | + | chr2.1:1391746-1391765 | None:intergenic | 35.0% |
| ! | GTTTGTTAAGAAACCCCAAA+TGG | - | chr2.1:1393938-1393957 | MS.gene85931:intron | 35.0% |
| ! | TTAGTGCCATTAATGGTGTT+TGG | - | chr2.1:1392472-1392491 | MS.gene85931:intron | 35.0% |
| !! | AGACTTTTACACAAAGGTGT+TGG | + | chr2.1:1392412-1392431 | None:intergenic | 35.0% |
| !! | CGTTTGTTGATGGTTTACAT+TGG | + | chr2.1:1394059-1394078 | None:intergenic | 35.0% |
| !! | CTGTCTTATTTGTGGATGTT+AGG | - | chr2.1:1394549-1394568 | MS.gene85931:intron | 35.0% |
| !! | GTTTTTCTTTTTTGTGGTGG+TGG | - | chr2.1:1393263-1393282 | MS.gene85931:intron | 35.0% |
| !! | TTATGGAGTTGGTATTCACT+TGG | + | chr2.1:1392331-1392350 | None:intergenic | 35.0% |
| !!! | ACTTTTACACAAAGGTGTTG+GGG | + | chr2.1:1392410-1392429 | None:intergenic | 35.0% |
| !!! | ATGGCATGTTTTAGAATAGG+AGG | - | chr2.1:1391961-1391980 | MS.gene85931:CDS | 35.0% |
| !!! | CAATAAGCTGTTTTTGCATG+CGG | - | chr2.1:1392793-1392812 | MS.gene85931:intron | 35.0% |
| !!! | CCCTTTTTAGCTTGCTTAAT+CGG | + | chr2.1:1392886-1392905 | None:intergenic | 35.0% |
| !!! | CCTCAAGTTTTGGATTTTGA+AGG | + | chr2.1:1392369-1392388 | None:intergenic | 35.0% |
| !!! | GACTTTTACACAAAGGTGTT+GGG | + | chr2.1:1392411-1392430 | None:intergenic | 35.0% |
| !!! | GATTTGGCTTTTTGAGCAAA+AGG | - | chr2.1:1391868-1391887 | MS.gene85931:intron | 35.0% |
| !!! | TGTTATTGTTTTGATCAGGG+AGG | - | chr2.1:1395190-1395209 | MS.gene85931:CDS | 35.0% |
| !!! | TTTTGGATTTTGAAGGTGCT+TGG | + | chr2.1:1392362-1392381 | None:intergenic | 35.0% |
| AAATGAATGATGGTTGGACG+AGG | + | chr2.1:1394253-1394272 | None:intergenic | 40.0% | |
| AAATGCATGGATTTGACACG+TGG | - | chr2.1:1392674-1392693 | MS.gene85931:intron | 40.0% | |
| AACCACTGTATAGACTATGG+AGG | - | chr2.1:1394620-1394639 | MS.gene85931:intron | 40.0% | |
| AGGCAATTTGTGTTCCTCTT+TGG | - | chr2.1:1392299-1392318 | MS.gene85931:intron | 40.0% | |
| ATTGATGGGGTGGTGAAAAT+GGG | - | chr2.1:1392642-1392661 | MS.gene85931:intron | 40.0% | |
| CCAATCCTAAGTTTATGAGC+TGG | + | chr2.1:1394511-1394530 | None:intergenic | 40.0% | |
| CCAGCTCATAAACTTAGGAT+TGG | - | chr2.1:1394508-1394527 | MS.gene85931:intron | 40.0% | |
| GACTTGGCGAATAAACTACA+AGG | + | chr2.1:1394214-1394233 | None:intergenic | 40.0% | |
| GAGTGCTACAACTGTAAGAT+AGG | + | chr2.1:1394012-1394031 | None:intergenic | 40.0% | |
| GATTTCTTCAAAGCAAAGCG+CGG | - | chr2.1:1391840-1391859 | MS.gene85931:intron | 40.0% | |
| TAAACCATCAACAAACGAGG+TGG | - | chr2.1:1394062-1394081 | MS.gene85931:intron | 40.0% | |
| TAAGTTATGCTGGGAGCTAT+GGG | + | chr2.1:1394108-1394127 | None:intergenic | 40.0% | |
| TATTGATGGGGTGGTGAAAA+TGG | - | chr2.1:1392641-1392660 | MS.gene85931:intron | 40.0% | |
| TCATGTGCCTCAATAACTCT+AGG | - | chr2.1:1392033-1392052 | MS.gene85931:intron | 40.0% | |
| TGAATAAGCCCATTATTGCG+AGG | - | chr2.1:1394147-1394166 | MS.gene85931:intron | 40.0% | |
| TGGGAAAGAGGAAAAATGCA+TGG | - | chr2.1:1392661-1392680 | MS.gene85931:intron | 40.0% | |
| TTAAGTTATGCTGGGAGCTA+TGG | + | chr2.1:1394109-1394128 | None:intergenic | 40.0% | |
| TTGCACCTAACAGACTAACT+TGG | - | chr2.1:1394170-1394189 | MS.gene85931:intron | 40.0% | |
| ! | AAAAGGGTATATTGATGGGG+TGG | - | chr2.1:1392632-1392651 | MS.gene85931:intron | 40.0% |
| ! | ATTCTGATTCTGGTTAGACC+AGG | - | chr2.1:1394427-1394446 | MS.gene85931:intron | 40.0% |
| ! | CAATACAAGGCATTACCCTT+CGG | + | chr2.1:1393976-1393995 | None:intergenic | 40.0% |
| ! | CTCTGCATAGCCTTGAAATA+TGG | - | chr2.1:1392448-1392467 | MS.gene85931:intron | 40.0% |
| ! | GAGAAAGCATACAATGGGTT+GGG | + | chr2.1:1391741-1391760 | None:intergenic | 40.0% |
| ! | TGAACATGTCTGGAGCATAA+TGG | - | chr2.1:1392131-1392150 | MS.gene85931:intron | 40.0% |
| ! | TGAGAAAGCATACAATGGGT+TGG | + | chr2.1:1391742-1391761 | None:intergenic | 40.0% |
| !!! | TGGGGTTTGTTTTGATTGAG+AGG | + | chr2.1:1392392-1392411 | None:intergenic | 40.0% |
| AAGGCTATGCAGAGATGTGA+AGG | + | chr2.1:1392442-1392461 | None:intergenic | 45.0% | |
| AAGTTATGCTGGGAGCTATG+GGG | + | chr2.1:1394107-1394126 | None:intergenic | 45.0% | |
| ACCTGATGCTCAACATGACT+GGG | + | chr2.1:1392277-1392296 | None:intergenic | 45.0% | |
| AGGTGCAACCTCGCAATAAT+GGG | + | chr2.1:1394158-1394177 | None:intergenic | 45.0% | |
| CAAAAGACAGGTTCACAACC+TGG | + | chr2.1:1394337-1394356 | None:intergenic | 45.0% | |
| CTAAGTTTATGAGCTGGGGT+GGG | + | chr2.1:1394505-1394524 | None:intergenic | 45.0% | |
| GATGGTTTACATTGGGCTGT+TGG | + | chr2.1:1394051-1394070 | None:intergenic | 45.0% | |
| GCTCATATTAACCGCATCTG+TGG | - | chr2.1:1392849-1392868 | MS.gene85931:intron | 45.0% | |
| GGTCATGACCCTTTGAACTT+TGG | + | chr2.1:1391720-1391739 | None:intergenic | 45.0% | |
| GTATACGTGTGCGAATGTGT+TGG | - | chr2.1:1392719-1392738 | MS.gene85931:intron | 45.0% | |
| TAGCTAGATTCACGAGCTTG+AGG | - | chr2.1:1392103-1392122 | MS.gene85931:intron | 45.0% | |
| TAGGTGCAACCTCGCAATAA+TGG | + | chr2.1:1394159-1394178 | None:intergenic | 45.0% | |
| TCAGGGAGGATCCTTCTTAA+AGG | - | chr2.1:1395204-1395223 | MS.gene85931:CDS | 45.0% | |
| TCATGTTGAGCATCAGGTGA+AGG | - | chr2.1:1392279-1392298 | MS.gene85931:intron | 45.0% | |
| TGAGCTTAGCTCAGCTGATA+TGG | + | chr2.1:1393330-1393349 | None:intergenic | 45.0% | |
| TGAGGACGATTGAACATGTC+TGG | - | chr2.1:1392121-1392140 | MS.gene85931:intron | 45.0% | |
| TGCCTCCATAGTCTATACAG+TGG | + | chr2.1:1394625-1394644 | None:intergenic | 45.0% | |
| TTATGCTGTTGTTGTGTGCC+AGG | - | chr2.1:1394316-1394335 | MS.gene85931:intron | 45.0% | |
| ! | ACATCCACCTCGTTTGTTGA+TGG | + | chr2.1:1394069-1394088 | None:intergenic | 45.0% |
| ! | CAGGTTGTGAACCTGTCTTT+TGG | - | chr2.1:1394335-1394354 | MS.gene85931:intron | 45.0% |
| ! | GATTGAGAGGCCTCAAGTTT+TGG | + | chr2.1:1392379-1392398 | None:intergenic | 45.0% |
| !! | GGGTTCAGCTGTCTTATTTG+TGG | - | chr2.1:1394541-1394560 | MS.gene85931:intron | 45.0% |
| !!! | TTCTTTTTTGTGGTGGTGGC+CGG | - | chr2.1:1393267-1393286 | MS.gene85931:intron | 45.0% |
| !! | AATATATACTATATATAAAA+AGG | + | chr2.1:1393424-1393443 | None:intergenic | 5.0% |
| !!! | AAAATTTTGATTAAAATTAT+AGG | - | chr2.1:1393077-1393096 | MS.gene85931:intron | 5.0% |
| AACGAGGTGGATGTGTTGTC+TGG | - | chr2.1:1394075-1394094 | MS.gene85931:intron | 50.0% | |
| ATTCGCCAAGTCAGCCTGTT+AGG | - | chr2.1:1394222-1394241 | MS.gene85931:intron | 50.0% | |
| CACCTGATGCTCAACATGAC+TGG | + | chr2.1:1392278-1392297 | None:intergenic | 50.0% | |
| CCACCCCAGCTCATAAACTT+AGG | - | chr2.1:1394503-1394522 | MS.gene85931:intron | 50.0% | |
| CCTAAGTTTATGAGCTGGGG+TGG | + | chr2.1:1394506-1394525 | None:intergenic | 50.0% | |
| CGCAATATTCGATCTGGACG+AGG | - | chr2.1:1392749-1392768 | MS.gene85931:intron | 50.0% | |
| GAGCTAGATTCACGAGCTTG+AGG | - | chr2.1:1393719-1393738 | MS.gene85931:intron | 50.0% | |
| GCAAAGCGCGGATTCAGATT+TGG | - | chr2.1:1391852-1391871 | MS.gene85931:intron | 50.0% | |
| GGCGAGCACCAAAGTTCAAA+GGG | - | chr2.1:1391709-1391728 | MS.gene85931:intron | 50.0% | |
| GGGTGGTGAAAATGGGAAAG+AGG | - | chr2.1:1392649-1392668 | MS.gene85931:intron | 50.0% | |
| TAGTCTGGTCTGGTTAGACC+AGG | - | chr2.1:1394466-1394485 | MS.gene85931:intron | 50.0% | |
| TCAGCTGAGCTAAGCTCACA+AGG | - | chr2.1:1393332-1393351 | MS.gene85931:intron | 50.0% | |
| TCCCAGTCATGTTGAGCATC+AGG | - | chr2.1:1392273-1392292 | MS.gene85931:intron | 50.0% | |
| TGGCGAGCACCAAAGTTCAA+AGG | - | chr2.1:1391708-1391727 | MS.gene85931:intron | 50.0% | |
| TGGGCTGTTGGATGCATACA+TGG | + | chr2.1:1394039-1394058 | None:intergenic | 50.0% | |
| TTGCACCTAACAGGCTGACT+TGG | + | chr2.1:1394230-1394249 | None:intergenic | 50.0% | |
| ! | GCTCGTGAATCTAGCTCAAG+AGG | + | chr2.1:1393716-1393735 | None:intergenic | 50.0% |
| ! | GCTGTTGCATCTGCCATTTG+GGG | + | chr2.1:1393954-1393973 | None:intergenic | 50.0% |
| ! | GGCTGTTGCATCTGCCATTT+GGG | + | chr2.1:1393955-1393974 | None:intergenic | 50.0% |
| !! | TCACTTGGTGCAGTCCAAAG+AGG | + | chr2.1:1392316-1392335 | None:intergenic | 50.0% |
| !!! | TCTTTTTTGTGGTGGTGGCC+GGG | - | chr2.1:1393268-1393287 | MS.gene85931:intron | 50.0% |
| AACCGCATCTGTGGCAGTGA+TGG | - | chr2.1:1392858-1392877 | MS.gene85931:intron | 55.0% | |
| AGACCAGACTAGAGCAGACC+TGG | + | chr2.1:1394457-1394476 | None:intergenic | 55.0% | |
| AGGTCTGCTCTAGTCTGGTC+TGG | - | chr2.1:1394456-1394475 | MS.gene85931:intron | 55.0% | |
| ATGGCAGATGCAACAGCCGA+AGG | - | chr2.1:1393957-1393976 | MS.gene85931:intron | 55.0% | |
| CGGCTGTTGCATCTGCCATT+TGG | + | chr2.1:1393956-1393975 | None:intergenic | 55.0% | |
| TCGATCTGGACGAGGTTGCT+TGG | - | chr2.1:1392757-1392776 | MS.gene85931:intron | 55.0% | |
| TGCCATCACTGCCACAGATG+CGG | + | chr2.1:1392863-1392882 | None:intergenic | 55.0% | |
| TGGACGAGGTTGCACCTAAC+AGG | + | chr2.1:1394239-1394258 | None:intergenic | 55.0% | |
| TGGCAGATGCAACAGCCGAA+GGG | - | chr2.1:1393958-1393977 | MS.gene85931:intron | 55.0% | |
| !!! | CTTTTTTGTGGTGGTGGCCG+GGG | - | chr2.1:1393269-1393288 | MS.gene85931:intron | 55.0% |
| AAGATCCGGGGTTCGAACCC+CGG | + | chr2.1:1393289-1393308 | None:intergenic | 60.0% | |
| CAGACTAGAGCAGACCTGGC+TGG | + | chr2.1:1394453-1394472 | None:intergenic | 60.0% | |
| CAGCCAGGTCTGCTCTAGTC+TGG | - | chr2.1:1394451-1394470 | MS.gene85931:intron | 60.0% | |
| CTGGTTAGACCAGGCCAGCC+AGG | - | chr2.1:1394436-1394455 | MS.gene85931:intron | 65.0% | |
| ! | TAGAGCAGACCTGGCTGGCC+TGG | + | chr2.1:1394448-1394467 | None:intergenic | 65.0% |
| TGAGCTGGGGTGGGCAGACG+TGG | + | chr2.1:1394496-1394515 | None:intergenic | 70.0% | |
| CTGGGGTGGGCAGACGTGGC+TGG | + | chr2.1:1394492-1394511 | None:intergenic | 75.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | - | chr2.1:1393281-1393300 | MS.gene85931:intron | 75.0% | |
| ! | GTGGGCAGACGTGGCTGGCC+TGG | + | chr2.1:1394487-1394506 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 1391707 | 1395352 | 1391707 | ID=MS.gene85931 |
| chr2.1 | mRNA | 1391707 | 1395352 | 1391707 | ID=MS.gene85931.t1;Parent=MS.gene85931 |
| chr2.1 | exon | 1395311 | 1395352 | 1395311 | ID=MS.gene85931.t1.exon1;Parent=MS.gene85931.t1 |
| chr2.1 | CDS | 1395311 | 1395352 | 1395311 | ID=cds.MS.gene85931.t1;Parent=MS.gene85931.t1 |
| chr2.1 | exon | 1395143 | 1395232 | 1395143 | ID=MS.gene85931.t1.exon2;Parent=MS.gene85931.t1 |
| chr2.1 | CDS | 1395143 | 1395232 | 1395143 | ID=cds.MS.gene85931.t1;Parent=MS.gene85931.t1 |
| chr2.1 | exon | 1391932 | 1392010 | 1391932 | ID=MS.gene85931.t1.exon3;Parent=MS.gene85931.t1 |
| chr2.1 | CDS | 1391932 | 1392010 | 1391932 | ID=cds.MS.gene85931.t1;Parent=MS.gene85931.t1 |
| chr2.1 | exon | 1391806 | 1391851 | 1391806 | ID=MS.gene85931.t1.exon4;Parent=MS.gene85931.t1 |
| chr2.1 | CDS | 1391806 | 1391851 | 1391806 | ID=cds.MS.gene85931.t1;Parent=MS.gene85931.t1 |
| chr2.1 | exon | 1391707 | 1391716 | 1391707 | ID=MS.gene85931.t1.exon5;Parent=MS.gene85931.t1 |
| chr2.1 | CDS | 1391707 | 1391716 | 1391707 | ID=cds.MS.gene85931.t1;Parent=MS.gene85931.t1 |
| Gene Sequence |
| Protein sequence |
