Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009798.t1 | XP_003597961.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.40E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009798.t1 | A4FUI2 | 72.8 | 81 | 22 | 0 | 5 | 85 | 9 | 89 | 4.8e-28 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009798.t1 | G7IMA2 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.0e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009798.t1 | MTR_5g072530 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| MS.gene009798.t1 | MTR_2g104440 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 4.62e-60 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009798.t1 | AT4G30330 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 4.45e-55 | 165 |
| MS.gene009798.t1 | AT2G18740 | 89.773 | 88 | 9 | 0 | 1 | 88 | 1 | 88 | 5.93e-55 | 165 |
| MS.gene009798.t1 | AT2G18740 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 2.53e-42 | 133 |
Find 11 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGAGGATCCTTCTTAA+AGG | 0.293334 | 5.3:+57225919 | MS.gene009798:intron |
| AGAAAGCGCGGATTCAGATT+TGG | 0.378565 | 5.3:+57222913 | MS.gene009798:intron |
| CGAGTACATGAATTTGGTAT+TGG | 0.384393 | 5.3:+57225772 | MS.gene009798:CDS |
| CAGAAGGATTTGAGGATTGA+AGG | 0.397492 | 5.3:+57222945 | MS.gene009798:CDS |
| TTATGTTGTCTCCTTTAAGA+AGG | 0.459912 | 5.3:-57225930 | None:intergenic |
| GGTCATGACCCTCTGAACTT+TGG | 0.461405 | 5.3:-57222673 | None:intergenic |
| TGAGAAGCTTACAATGGGTT+GGG | 0.503703 | 5.3:-57222694 | None:intergenic |
| CTGAACTTTGGTGCTCGCCA+TGG | 0.543294 | 5.3:-57222661 | None:intergenic |
| ATGAGAAGCTTACAATGGGT+TGG | 0.562440 | 5.3:-57222695 | None:intergenic |
| GGCGAGCACCAAAGTTCAGA+GGG | 0.604807 | 5.3:+57222665 | MS.gene009798:CDS |
| TGGCGAGCACCAAAGTTCAG+AGG | 0.636699 | 5.3:+57222664 | MS.gene009798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTTGTAATTTAATGATT+TGG | + | chr5.3:57225104-57225123 | MS.gene009798:intron | 15.0% |
| !! | ACACTAAAAAAAAAAAGAAA+GGG | + | chr5.3:57223462-57223481 | MS.gene009798:intron | 15.0% |
| !! | ATTTAAATTATTGTTGCTAT+TGG | + | chr5.3:57223310-57223329 | MS.gene009798:intron | 15.0% |
| !! | GTTATTGTAAATACATTTAA+GGG | - | chr5.3:57223902-57223921 | None:intergenic | 15.0% |
| !! | TACACTAAAAAAAAAAAGAA+AGG | + | chr5.3:57223461-57223480 | MS.gene009798:intron | 15.0% |
| !! | AAGAAAAGTGAAATTAAAAG+AGG | - | chr5.3:57222731-57222750 | None:intergenic | 20.0% |
| !! | ATTTGCAAATTTATTTATGC+TGG | - | chr5.3:57224947-57224966 | None:intergenic | 20.0% |
| !! | CACTAAAAAAAAAAAGAAAG+GGG | + | chr5.3:57223463-57223482 | MS.gene009798:intron | 20.0% |
| !! | GAAAAAGAAGAAAAAAAACA+CGG | - | chr5.3:57222779-57222798 | None:intergenic | 20.0% |
| !! | GGTTATTGTAAATACATTTA+AGG | - | chr5.3:57223903-57223922 | None:intergenic | 20.0% |
| !! | GTTATTCTCAAATATTTCAT+AGG | + | chr5.3:57223831-57223850 | MS.gene009798:intron | 20.0% |
| !! | TTTGCAAATTTATTTATGCT+GGG | - | chr5.3:57224946-57224965 | None:intergenic | 20.0% |
| !!! | AGTTTTTTAATCCACTTAAT+TGG | + | chr5.3:57223809-57223828 | MS.gene009798:intron | 20.0% |
| !!! | ATCTTATTTTTGTTTTGAAC+AGG | + | chr5.3:57225742-57225761 | MS.gene009798:intron | 20.0% |
| !!! | ATTACTTGATAGTTAATTTC+TGG | + | chr5.3:57225290-57225309 | MS.gene009798:intron | 20.0% |
| !!! | ATTTGCTTTTACAAATTTCA+GGG | + | chr5.3:57226039-57226058 | MS.gene009798:intron | 20.0% |
| !!! | CTTGCTTTTTTTTTTTTACA+CGG | + | chr5.3:57222998-57223017 | MS.gene009798:intron | 20.0% |
| !!! | TCTTATTTTTGTTTTGAACA+GGG | + | chr5.3:57225743-57225762 | MS.gene009798:intron | 20.0% |
| !!! | TTGCTTTTTTTTTTTTACAC+GGG | + | chr5.3:57222999-57223018 | MS.gene009798:intron | 20.0% |
| ! | AAATCAGAAAAACGAAACTT+TGG | - | chr5.3:57222868-57222887 | None:intergenic | 25.0% |
| ! | AAATCATTTCACTTACATTG+TGG | - | chr5.3:57226023-57226042 | None:intergenic | 25.0% |
| ! | AAATGACATCATAATGTGAT+TGG | - | chr5.3:57223370-57223389 | None:intergenic | 25.0% |
| ! | AAGAAACGTTTACCTAATTA+GGG | - | chr5.3:57224113-57224132 | None:intergenic | 25.0% |
| ! | AATCAGAAAAACGAAACTTT+GGG | - | chr5.3:57222867-57222886 | None:intergenic | 25.0% |
| ! | ACAGGATTATATAAAACTCT+TGG | - | chr5.3:57224233-57224252 | None:intergenic | 25.0% |
| ! | ATTATATAAAACTCTTGGCT+TGG | - | chr5.3:57224228-57224247 | None:intergenic | 25.0% |
| ! | ATTTACCAAAACTTCAAACA+GGG | - | chr5.3:57223230-57223249 | None:intergenic | 25.0% |
| ! | CAAACATGTCTACAAAATAA+TGG | + | chr5.3:57224709-57224728 | MS.gene009798:intron | 25.0% |
| ! | CAAATATCCAAATTCTAATG+AGG | - | chr5.3:57225698-57225717 | None:intergenic | 25.0% |
| ! | CGAGTTAATTCAATTACAAA+CGG | + | chr5.3:57224644-57224663 | MS.gene009798:intron | 25.0% |
| ! | GATAAATGAATAACTACAAC+AGG | - | chr5.3:57225466-57225485 | None:intergenic | 25.0% |
| ! | GTTGTAGTTATTCATTTATC+AGG | + | chr5.3:57225466-57225485 | MS.gene009798:intron | 25.0% |
| ! | TATTTACCAAAACTTCAAAC+AGG | - | chr5.3:57223231-57223250 | None:intergenic | 25.0% |
| ! | TTGAAGTTAGTATTAAAGCT+AGG | - | chr5.3:57225375-57225394 | None:intergenic | 25.0% |
| ! | TTTGAGAATAACCAATTAAG+TGG | - | chr5.3:57223823-57223842 | None:intergenic | 25.0% |
| !! | ACTTTTTGTATGACATGTTT+TGG | + | chr5.3:57224566-57224585 | MS.gene009798:intron | 25.0% |
| !! | GAGATTCAAATTCAAAGTTT+TGG | - | chr5.3:57225567-57225586 | None:intergenic | 25.0% |
| !! | GTTGTATGTATTTTCATATC+TGG | + | chr5.3:57223602-57223621 | MS.gene009798:intron | 25.0% |
| !!! | AAGAGTTTTATATAATCCTG+TGG | + | chr5.3:57224232-57224251 | MS.gene009798:intron | 25.0% |
| !!! | ATTCAAAGTTTTGGATAACA+AGG | - | chr5.3:57225558-57225577 | None:intergenic | 25.0% |
| !!! | GATTTGCTTTTACAAATTTC+AGG | + | chr5.3:57226038-57226057 | MS.gene009798:intron | 25.0% |
| !!! | TTTGCTTTTACAAATTTCAG+GGG | + | chr5.3:57226040-57226059 | MS.gene009798:intron | 25.0% |
| AAACATGTTGAAAAAGACAG+GGG | + | chr5.3:57224750-57224769 | MS.gene009798:intron | 30.0% | |
| AAATATGATCAGTGTAGCTT+TGG | + | chr5.3:57224061-57224080 | MS.gene009798:intron | 30.0% | |
| AACAGAAGGAAGAATTAAGA+AGG | - | chr5.3:57222839-57222858 | None:intergenic | 30.0% | |
| AAGTTTCAACATTCACAAGT+TGG | - | chr5.3:57225034-57225053 | None:intergenic | 30.0% | |
| AATAGCTACAACTGTACAAT+AGG | - | chr5.3:57224853-57224872 | None:intergenic | 30.0% | |
| AATATGATCAGTGTAGCTTT+GGG | + | chr5.3:57224062-57224081 | MS.gene009798:intron | 30.0% | |
| AATCTGATAATTAACTCCAC+TGG | - | chr5.3:57224201-57224220 | None:intergenic | 30.0% | |
| AGAAAAAAAACACGGAGATT+AGG | - | chr5.3:57222771-57222790 | None:intergenic | 30.0% | |
| AGAAACGTTTACCTAATTAG+GGG | - | chr5.3:57224112-57224131 | None:intergenic | 30.0% | |
| AGTACATCCTCATTAGAATT+TGG | + | chr5.3:57225688-57225707 | MS.gene009798:intron | 30.0% | |
| AGTTACTAGAGAATGAAGAA+TGG | - | chr5.3:57225081-57225100 | None:intergenic | 30.0% | |
| AGTTTCAACATTCACAAGTT+GGG | - | chr5.3:57225033-57225052 | None:intergenic | 30.0% | |
| AGTTTGTAAGCAGTTCAAAA+GGG | + | chr5.3:57224299-57224318 | MS.gene009798:intron | 30.0% | |
| ATCAGAAAAACGAAACTTTG+GGG | - | chr5.3:57222866-57222885 | None:intergenic | 30.0% | |
| CAAACATGTTGAAAAAGACA+GGG | + | chr5.3:57224749-57224768 | MS.gene009798:intron | 30.0% | |
| CAAGAAACGTTTACCTAATT+AGG | - | chr5.3:57224114-57224133 | None:intergenic | 30.0% | |
| CGAATATAGACCAAAAACAT+AGG | - | chr5.3:57225166-57225185 | None:intergenic | 30.0% | |
| TAAATTCAGTAGTACTTGTC+AGG | - | chr5.3:57223295-57223314 | None:intergenic | 30.0% | |
| TAAGATCACAAGATCCTTAA+CGG | - | chr5.3:57225728-57225747 | None:intergenic | 30.0% | |
| TAGATGAAAAACTGCATTTG+TGG | + | chr5.3:57224346-57224365 | MS.gene009798:intron | 30.0% | |
| TATAAGCACTAGATCATGTA+TGG | - | chr5.3:57224145-57224164 | None:intergenic | 30.0% | |
| TCTCATATCTTCTTTAAGCA+GGG | - | chr5.3:57225443-57225462 | None:intergenic | 30.0% | |
| TCTTTCAATTATGTTCTTCC+TGG | + | chr5.3:57223108-57223127 | MS.gene009798:intron | 30.0% | |
| TGAATCTAGCTAAGTTTACA+TGG | - | chr5.3:57224673-57224692 | None:intergenic | 30.0% | |
| TGTAATAGTCCAATTAGTCA+CGG | + | chr5.3:57223419-57223438 | MS.gene009798:intron | 30.0% | |
| TTAGACGCATCATAAGATTA+TGG | - | chr5.3:57223258-57223277 | None:intergenic | 30.0% | |
| TTCTGCTATTAGATGTTTCT+AGG | + | chr5.3:57224492-57224511 | MS.gene009798:intron | 30.0% | |
| TTTGCTTCTTTCAACAGTTT+AGG | + | chr5.3:57225588-57225607 | MS.gene009798:intron | 30.0% | |
| ! | AAGTTGTGAACCTATGTTTT+TGG | + | chr5.3:57225153-57225172 | MS.gene009798:intron | 30.0% |
| ! | AATTATGTACTCGGACTTTT+AGG | + | chr5.3:57223136-57223155 | MS.gene009798:intron | 30.0% |
| ! | ACTTGATAGTTAATTTCTGG+AGG | + | chr5.3:57225293-57225312 | MS.gene009798:intron | 30.0% |
| ! | ATATCTGGTAATCTTTTCTG+TGG | + | chr5.3:57223617-57223636 | MS.gene009798:intron | 30.0% |
| ! | ATCTCATGGTAGATTTTCAT+AGG | + | chr5.3:57223754-57223773 | MS.gene009798:intron | 30.0% |
| ! | ATGGTGTTTTGTACAATACA+GGG | - | chr5.3:57224830-57224849 | None:intergenic | 30.0% |
| ! | CTGTAGTTTATCTTTTGGAT+TGG | + | chr5.3:57224015-57224034 | MS.gene009798:intron | 30.0% |
| ! | TATCTGGTAATCTTTTCTGT+GGG | + | chr5.3:57223618-57223637 | MS.gene009798:intron | 30.0% |
| ! | TGTGAACTCGTAATTTTTAC+TGG | + | chr5.3:57223785-57223804 | MS.gene009798:intron | 30.0% |
| ! | TTATGTTGTCTCCTTTAAGA+AGG | - | chr5.3:57225933-57225952 | None:intergenic | 30.0% |
| ! | TTGCTTCACTAAGTTGAATT+CGG | + | chr5.3:57225053-57225072 | MS.gene009798:intron | 30.0% |
| ! | TTTTGACGAGTACATGAATT+TGG | + | chr5.3:57225766-57225785 | MS.gene009798:CDS | 30.0% |
| !! | TTTTAGGAAAGCTATGGTTT+TGG | + | chr5.3:57223152-57223171 | MS.gene009798:intron | 30.0% |
| !!! | AGGGTGTTATTGTTTTGATT+AGG | + | chr5.3:57225901-57225920 | MS.gene009798:intron | 30.0% |
| !!! | CTGTCTTTTTCAACATGTTT+GGG | - | chr5.3:57224750-57224769 | None:intergenic | 30.0% |
| !!! | GGGTGTTATTGTTTTGATTA+GGG | + | chr5.3:57225902-57225921 | MS.gene009798:intron | 30.0% |
| !!! | TGTATGACATGTTTTGGAAT+AGG | + | chr5.3:57224572-57224591 | MS.gene009798:intron | 30.0% |
| !!! | TGTCTTTTTCAACATGTTTG+GGG | - | chr5.3:57224749-57224768 | None:intergenic | 30.0% |
| !!! | TGTTATTGTTTTGATTAGGG+AGG | + | chr5.3:57225905-57225924 | MS.gene009798:intron | 30.0% |
| !!! | TGTTTTTTAAGAAACCCCAA+AGG | + | chr5.3:57224778-57224797 | MS.gene009798:intron | 30.0% |
| AAGAAGAGCAAAAAGACACT+AGG | + | chr5.3:57225821-57225840 | MS.gene009798:CDS | 35.0% | |
| AAGATCACAAGATCCTTAAC+GGG | - | chr5.3:57225727-57225746 | None:intergenic | 35.0% | |
| AATCCTAAGTATATGAGCTG+AGG | - | chr5.3:57225235-57225254 | None:intergenic | 35.0% | |
| AATTAGCATCAACCACTGTA+TGG | + | chr5.3:57225327-57225346 | MS.gene009798:intron | 35.0% | |
| ATATTTGAGTAGACCCGTTA+AGG | + | chr5.3:57225711-57225730 | MS.gene009798:intron | 35.0% | |
| CCAAACATGTTGAAAAAGAC+AGG | + | chr5.3:57224748-57224767 | MS.gene009798:intron | 35.0% | |
| CGAGTACATGAATTTGGTAT+TGG | + | chr5.3:57225772-57225791 | MS.gene009798:CDS | 35.0% | |
| CTGGTGTAGAATTATGTACT+CGG | + | chr5.3:57223127-57223146 | MS.gene009798:intron | 35.0% | |
| GAATTGATCATAGAAAGAGC+AGG | - | chr5.3:57223685-57223704 | None:intergenic | 35.0% | |
| GAGTTTGTAAGCAGTTCAAA+AGG | + | chr5.3:57224298-57224317 | MS.gene009798:intron | 35.0% | |
| GATAAACTACAGCACCAATA+AGG | - | chr5.3:57224007-57224026 | None:intergenic | 35.0% | |
| GATCAAAGAGTTGTAAGTTG+TGG | - | chr5.3:57224381-57224400 | None:intergenic | 35.0% | |
| GTAATAGTCCAATTAGTCAC+GGG | + | chr5.3:57223420-57223439 | MS.gene009798:intron | 35.0% | |
| GTCTCATATCTTCTTTAAGC+AGG | - | chr5.3:57225444-57225463 | None:intergenic | 35.0% | |
| TAAACAAGTCCATTATTGCG+AGG | + | chr5.3:57224976-57224995 | MS.gene009798:intron | 35.0% | |
| TCAGCTCATATACTTAGGAT+TGG | + | chr5.3:57225234-57225253 | MS.gene009798:intron | 35.0% | |
| TCATACTCCTATAACCAACT+CGG | - | chr5.3:57223506-57223525 | None:intergenic | 35.0% | |
| TGATCAATTCTATTCTGCCA+TGG | + | chr5.3:57223695-57223714 | MS.gene009798:intron | 35.0% | |
| TGTGATGAGAAGCTTACAAT+GGG | - | chr5.3:57222702-57222721 | None:intergenic | 35.0% | |
| TTATTTATGCTGGGAGCAAT+GGG | - | chr5.3:57224937-57224956 | None:intergenic | 35.0% | |
| TTTATTTATGCTGGGAGCAA+TGG | - | chr5.3:57224938-57224957 | None:intergenic | 35.0% | |
| ! | ATCTGGTAATCTTTTCTGTG+GGG | + | chr5.3:57223619-57223638 | MS.gene009798:intron | 35.0% |
| ! | CCACTTATGCATTTTCTGAA+GGG | + | chr5.3:57225882-57225901 | MS.gene009798:intron | 35.0% |
| ! | GATGGTGTTTTGTACAATAC+AGG | - | chr5.3:57224831-57224850 | None:intergenic | 35.0% |
| ! | GGTTATAGGAGTATGAGTAA+GGG | + | chr5.3:57223510-57223529 | MS.gene009798:intron | 35.0% |
| ! | TCCACTTATGCATTTTCTGA+AGG | + | chr5.3:57225881-57225900 | MS.gene009798:intron | 35.0% |
| ! | TGGTTATAGGAGTATGAGTA+AGG | + | chr5.3:57223509-57223528 | MS.gene009798:intron | 35.0% |
| !! | AAACTCTAGGCTATTTTCCA+TGG | - | chr5.3:57224170-57224189 | None:intergenic | 35.0% |
| !! | AACTCTAGGCTATTTTCCAT+GGG | - | chr5.3:57224169-57224188 | None:intergenic | 35.0% |
| !! | TTAGTCCCTGTTTGAAGTTT+TGG | + | chr5.3:57223222-57223241 | MS.gene009798:intron | 35.0% |
| !! | TTTTTAGTGTAAACCTCCCA+AGG | - | chr5.3:57223452-57223471 | None:intergenic | 35.0% |
| !! | TTTTTGAGCAGAAGGATTTG+AGG | + | chr5.3:57222937-57222956 | MS.gene009798:CDS | 35.0% |
| !!! | ACTTAGGATTGGTTTGCTTT+TGG | + | chr5.3:57225245-57225264 | MS.gene009798:intron | 35.0% |
| !!! | AGTTTTGGATAACAAGGATG+TGG | - | chr5.3:57225552-57225571 | None:intergenic | 35.0% |
| !!! | CCTGTCTTTTTCAACATGTT+TGG | - | chr5.3:57224751-57224770 | None:intergenic | 35.0% |
| !!! | CTTAGGATTGGTTTGCTTTT+GGG | + | chr5.3:57225246-57225265 | MS.gene009798:intron | 35.0% |
| !!! | GTCTTTTTCAACATGTTTGG+GGG | - | chr5.3:57224748-57224767 | None:intergenic | 35.0% |
| !!! | TGGTGCTGTAGTTTATCTTT+TGG | + | chr5.3:57224010-57224029 | MS.gene009798:intron | 35.0% |
| !!! | TGTTATTTTTGCAGAAAGCG+CGG | + | chr5.3:57222901-57222920 | MS.gene009798:intron | 35.0% |
| !!! | TTAGGATTGGTTTGCTTTTG+GGG | + | chr5.3:57225247-57225266 | MS.gene009798:intron | 35.0% |
| AACGTTTACCTAATTAGGGG+TGG | - | chr5.3:57224109-57224128 | None:intergenic | 40.0% | |
| ACAGCTAAAAGTAACACCAC+AGG | - | chr5.3:57224251-57224270 | None:intergenic | 40.0% | |
| ACATTCACCTCCTTTCACAT+TGG | - | chr5.3:57224900-57224919 | None:intergenic | 40.0% | |
| ATCAAATCGACAAGCTCCAT+AGG | - | chr5.3:57223736-57223755 | None:intergenic | 40.0% | |
| ATGAGAAGCTTACAATGGGT+TGG | - | chr5.3:57222698-57222717 | None:intergenic | 40.0% | |
| ATTCATGAGCTCGTTTCTTG+GGG | + | chr5.3:57225628-57225647 | MS.gene009798:intron | 40.0% | |
| CAGAAGGATTTGAGGATTGA+AGG | + | chr5.3:57222945-57222964 | MS.gene009798:CDS | 40.0% | |
| CATTCACCTCCTTTCACATT+GGG | - | chr5.3:57224899-57224918 | None:intergenic | 40.0% | |
| CCCTTCAGAAAATGCATAAG+TGG | - | chr5.3:57225885-57225904 | None:intergenic | 40.0% | |
| CGAGTACATAATTCTACACC+AGG | - | chr5.3:57223129-57223148 | None:intergenic | 40.0% | |
| CTAAGTATATGAGCTGAGGT+GGG | - | chr5.3:57225231-57225250 | None:intergenic | 40.0% | |
| CTTACAAACTCCACAGGTTT+GGG | - | chr5.3:57224289-57224308 | None:intergenic | 40.0% | |
| GAAAACCTGATTGTGACCTA+TGG | + | chr5.3:57223717-57223736 | MS.gene009798:intron | 40.0% | |
| GAAGACGATTGATGTATGAG+AGG | - | chr5.3:57223977-57223996 | None:intergenic | 40.0% | |
| GATCTAGTGCTTATAACCCA+TGG | + | chr5.3:57224150-57224169 | MS.gene009798:intron | 40.0% | |
| GATTCATGAGCTCGTTTCTT+GGG | + | chr5.3:57225627-57225646 | MS.gene009798:intron | 40.0% | |
| GCTACAACTGTACAATAGGA+TGG | - | chr5.3:57224849-57224868 | None:intergenic | 40.0% | |
| GGATGTGGTCAAGATAAATG+CGG | - | chr5.3:57225537-57225556 | None:intergenic | 40.0% | |
| GTGTGATGAGAAGCTTACAA+TGG | - | chr5.3:57222703-57222722 | None:intergenic | 40.0% | |
| TACATCAATCGTCTTCCTAG+TGG | + | chr5.3:57223981-57224000 | MS.gene009798:intron | 40.0% | |
| TATTTATGCTGGGAGCAATG+GGG | - | chr5.3:57224936-57224955 | None:intergenic | 40.0% | |
| TCATGTGACTCAACAACTCT+AGG | + | chr5.3:57224612-57224631 | MS.gene009798:intron | 40.0% | |
| TGATTCATGAGCTCGTTTCT+TGG | + | chr5.3:57225626-57225645 | MS.gene009798:intron | 40.0% | |
| TTAGGGAGGATCCTTCTTAA+AGG | + | chr5.3:57225919-57225938 | MS.gene009798:intron | 40.0% | |
| TTGTGAGAAACAGTATGTCG+CGG | - | chr5.3:57223875-57223894 | None:intergenic | 40.0% | |
| ! | AATTTCTGGAGGAGAAGATC+TGG | + | chr5.3:57225304-57225323 | MS.gene009798:intron | 40.0% |
| ! | AGCATAGAGCTTTTGCTTGT+CGG | - | chr5.3:57224542-57224561 | None:intergenic | 40.0% |
| ! | ATTTGCCAAGTTAGCCTGTT+AGG | - | chr5.3:57225007-57225026 | None:intergenic | 40.0% |
| ! | TAGAGTTTTACACAAGCCAG+TGG | + | chr5.3:57224182-57224201 | MS.gene009798:intron | 40.0% |
| ! | TGAGAAGCTTACAATGGGTT+GGG | - | chr5.3:57222697-57222716 | None:intergenic | 40.0% |
| !! | ACTGGCTTGTGTAAAACTCT+AGG | - | chr5.3:57224183-57224202 | None:intergenic | 40.0% |
| !! | AGCTTGTCGATTTGATCTCA+TGG | + | chr5.3:57223740-57223759 | MS.gene009798:intron | 40.0% |
| !! | TCGGACTTTTAGGAAAGCTA+TGG | + | chr5.3:57223146-57223165 | MS.gene009798:intron | 40.0% |
| !!! | GATTTGGCTTTTTGAGCAGA+AGG | + | chr5.3:57222929-57222948 | MS.gene009798:CDS | 40.0% |
| AAGCTCCATAGGTCACAATC+AGG | - | chr5.3:57223725-57223744 | None:intergenic | 45.0% | |
| AATGACAGAGTTAGCCGAGT+TGG | + | chr5.3:57223489-57223508 | MS.gene009798:intron | 45.0% | |
| ACAATTCTGCCTCCATACAG+TGG | - | chr5.3:57225342-57225361 | None:intergenic | 45.0% | |
| ACGATTGATGTATGAGAGGC+AGG | - | chr5.3:57223973-57223992 | None:intergenic | 45.0% | |
| AGCTGATGGGAATCAACTTC+TGG | - | chr5.3:57223924-57223943 | None:intergenic | 45.0% | |
| AGTTCAAAAGGGACAGCTGA+TGG | + | chr5.3:57224310-57224329 | MS.gene009798:intron | 45.0% | |
| ATCCAACAGCCCAATGTGAA+AGG | + | chr5.3:57224887-57224906 | MS.gene009798:intron | 45.0% | |
| CCACCTCAGCTCATATACTT+AGG | + | chr5.3:57225229-57225248 | MS.gene009798:intron | 45.0% | |
| CCTAAGTATATGAGCTGAGG+TGG | - | chr5.3:57225232-57225251 | None:intergenic | 45.0% | |
| CGATTGATGTATGAGAGGCA+GGG | - | chr5.3:57223972-57223991 | None:intergenic | 45.0% | |
| CTAGATTCACGAGTTTGACG+AGG | + | chr5.3:57224684-57224703 | MS.gene009798:intron | 45.0% | |
| CTTCACTTCCACCCCTAATT+AGG | + | chr5.3:57224098-57224117 | MS.gene009798:intron | 45.0% | |
| GAACTGCTTACAAACTCCAC+AGG | - | chr5.3:57224295-57224314 | None:intergenic | 45.0% | |
| GCTTACAAACTCCACAGGTT+TGG | - | chr5.3:57224290-57224309 | None:intergenic | 45.0% | |
| GGAGTATGAGTAAGGGAGAT+CGG | + | chr5.3:57223517-57223536 | MS.gene009798:intron | 45.0% | |
| GTCAAGATAAATGCGGATGG+TGG | - | chr5.3:57225530-57225549 | None:intergenic | 45.0% | |
| GTGGTCAAGATAAATGCGGA+TGG | - | chr5.3:57225533-57225552 | None:intergenic | 45.0% | |
| GTTTCTTGGGGGAATATGCT+TGG | + | chr5.3:57225640-57225659 | MS.gene009798:intron | 45.0% | |
| TAGCATCAACCACTGTATGG+AGG | + | chr5.3:57225330-57225349 | MS.gene009798:intron | 45.0% | |
| TAGGTGCAACCTCGCAATAA+TGG | - | chr5.3:57224988-57225007 | None:intergenic | 45.0% | |
| TTCATGAGCTCGTTTCTTGG+GGG | + | chr5.3:57225629-57225648 | MS.gene009798:intron | 45.0% | |
| TTGATGTTTGCCCAAACCTG+TGG | + | chr5.3:57224276-57224295 | MS.gene009798:intron | 45.0% | |
| TTGCACCTAACAGGCTAACT+TGG | + | chr5.3:57224999-57225018 | MS.gene009798:intron | 45.0% | |
| ! | AGAAAGCGCGGATTCAGATT+TGG | + | chr5.3:57222913-57222932 | MS.gene009798:intron | 45.0% |
| ! | AGTCTTGTCTGGTTAGACCA+GGG | + | chr5.3:57225193-57225212 | MS.gene009798:intron | 45.0% |
| ! | GCATAGAGCTTTTGCTTGTC+GGG | - | chr5.3:57224541-57224560 | None:intergenic | 45.0% |
| ! | GCGACATACTGTTTCTCACA+AGG | + | chr5.3:57223874-57223893 | MS.gene009798:intron | 45.0% |
| ! | GGTCACAATCAGGTTTTCCA+TGG | - | chr5.3:57223715-57223734 | None:intergenic | 45.0% |
| !! | AACTTTGGGGCAAGAACAGA+AGG | - | chr5.3:57222853-57222872 | None:intergenic | 45.0% |
| !! | GAGTTAGCCGAGTTGGTTAT+AGG | + | chr5.3:57223496-57223515 | MS.gene009798:intron | 45.0% |
| !! | GGGTTCAGTCGTCTTATTTG+TGG | + | chr5.3:57225267-57225286 | MS.gene009798:intron | 45.0% |
| ACAGCACCAATAAGGCCACT+AGG | - | chr5.3:57223999-57224018 | None:intergenic | 50.0% | |
| AGGCAGGGATACAAGCAAAG+TGG | - | chr5.3:57223957-57223976 | None:intergenic | 50.0% | |
| AGGGATACAAGCAAAGTGGC+TGG | - | chr5.3:57223953-57223972 | None:intergenic | 50.0% | |
| ATTGCGAGGTTGCACCTAAC+AGG | + | chr5.3:57224990-57225009 | MS.gene009798:intron | 50.0% | |
| CAACAGCCCAATGTGAAAGG+AGG | + | chr5.3:57224890-57224909 | MS.gene009798:intron | 50.0% | |
| CTCCTTTCACATTGGGCTGT+TGG | - | chr5.3:57224892-57224911 | None:intergenic | 50.0% | |
| GGCACAAACCCGTGACTAAT+TGG | - | chr5.3:57223431-57223450 | None:intergenic | 50.0% | |
| GGTCATGACCCTCTGAACTT+TGG | - | chr5.3:57222676-57222695 | None:intergenic | 50.0% | |
| TACCCTTCAGCTGTTGCATC+TGG | - | chr5.3:57224804-57224823 | None:intergenic | 50.0% | |
| TAGTCACGGGTTTGTGCCTT+GGG | + | chr5.3:57223433-57223452 | MS.gene009798:intron | 50.0% | |
| TGGCTGGTAGTACAGCTGAT+GGG | - | chr5.3:57223937-57223956 | None:intergenic | 50.0% | |
| TGGGCTGTTGGATGCATATG+TGG | - | chr5.3:57224880-57224899 | None:intergenic | 50.0% | |
| TTAGTCACGGGTTTGTGCCT+TGG | + | chr5.3:57223432-57223451 | MS.gene009798:intron | 50.0% | |
| ! | AGCTGTTGCATCTGGCCTTT+GGG | - | chr5.3:57224796-57224815 | None:intergenic | 50.0% |
| ! | AGCTTTTGCTTGTCGGGTAC+AGG | - | chr5.3:57224535-57224554 | None:intergenic | 50.0% |
| ! | GAGTCTTGTCTGGTTAGACC+AGG | + | chr5.3:57225192-57225211 | MS.gene009798:intron | 50.0% |
| ! | TTCGCTGCTTGAGTCTTGTC+TGG | + | chr5.3:57225182-57225201 | MS.gene009798:intron | 50.0% |
| !! | CGTCTTCCTAGTGGCCTTAT+TGG | + | chr5.3:57223990-57224009 | MS.gene009798:intron | 50.0% |
| AGGCCAGATGCAACAGCTGA+AGG | + | chr5.3:57224798-57224817 | MS.gene009798:intron | 55.0% | |
| GGCCAGATGCAACAGCTGAA+GGG | + | chr5.3:57224799-57224818 | MS.gene009798:intron | 55.0% | |
| GGCGAGCACCAAAGTTCAGA+GGG | + | chr5.3:57222665-57222684 | MS.gene009798:CDS | 55.0% | |
| GTGGCTGGTAGTACAGCTGA+TGG | - | chr5.3:57223938-57223957 | None:intergenic | 55.0% | |
| TGGCGAGCACCAAAGTTCAG+AGG | + | chr5.3:57222664-57222683 | MS.gene009798:CDS | 55.0% | |
| ! | CAGCTGTTGCATCTGGCCTT+TGG | - | chr5.3:57224797-57224816 | None:intergenic | 55.0% |
| ! | GCTGTTGCATCTGGCCTTTG+GGG | - | chr5.3:57224795-57224814 | None:intergenic | 55.0% |
| CTGGTTAGACCAGGGCAGCA+AGG | + | chr5.3:57225201-57225220 | MS.gene009798:intron | 60.0% | |
| TCACGGGTTTGTGCCTTGGG+AGG | + | chr5.3:57223436-57223455 | MS.gene009798:intron | 60.0% | |
| TGCTGGGAGCAATGGGGTTG+CGG | - | chr5.3:57224930-57224949 | None:intergenic | 60.0% | |
| GTGGGCAGACCTTGCTGCCC+TGG | - | chr5.3:57225213-57225232 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 57222663 | 57226069 | 57222663 | ID=MS.gene009798 |
| chr5.3 | mRNA | 57222663 | 57226069 | 57222663 | ID=MS.gene009798.t1;Parent=MS.gene009798 |
| chr5.3 | exon | 57222663 | 57222704 | 57222663 | ID=MS.gene009798.t1.exon1;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57222663 | 57222704 | 57222663 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| chr5.3 | exon | 57222803 | 57222829 | 57222803 | ID=MS.gene009798.t1.exon2;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57222803 | 57222829 | 57222803 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| chr5.3 | exon | 57222915 | 57222977 | 57222915 | ID=MS.gene009798.t1.exon3;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57222915 | 57222977 | 57222915 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| chr5.3 | exon | 57225764 | 57225842 | 57225764 | ID=MS.gene009798.t1.exon4;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57225764 | 57225842 | 57225764 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| chr5.3 | exon | 57225923 | 57225968 | 57225923 | ID=MS.gene009798.t1.exon5;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57225923 | 57225968 | 57225923 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| chr5.3 | exon | 57226060 | 57226069 | 57226060 | ID=MS.gene009798.t1.exon6;Parent=MS.gene009798.t1 |
| chr5.3 | CDS | 57226060 | 57226069 | 57226060 | ID=cds.MS.gene009798.t1;Parent=MS.gene009798.t1 |
| Gene Sequence |
| Protein sequence |
