Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014446.t1 | XP_013462196.1 | 96.2 | 555 | 21 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1095.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014446.t1 | Q9FYG4 | 46.1 | 529 | 270 | 12 | 33 | 555 | 96 | 615 | 2.2e-126 | 454.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014446.t1 | A0A072V3I4 | 96.2 | 555 | 21 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1095.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014446 | MS.gene050500 | PPI |
| MS.gene014446 | MS.gene92577 | PPI |
| MS.gene014446 | MS.gene037665 | PPI |
| MS.gene22907 | MS.gene014446 | PPI |
| MS.gene048092 | MS.gene014446 | PPI |
| MS.gene014446 | MS.gene73248 | PPI |
| MS.gene024604 | MS.gene014446 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014446.t1 | MTR_3g113210 | 96.216 | 555 | 21 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1106 |
| MS.gene014446.t1 | MTR_1g023570 | 69.943 | 529 | 147 | 6 | 29 | 555 | 25 | 543 | 0.0 | 785 |
| MS.gene014446.t1 | MTR_6g004960 | 65.259 | 521 | 174 | 4 | 37 | 555 | 1 | 516 | 0.0 | 729 |
| MS.gene014446.t1 | MTR_7g114530 | 57.250 | 531 | 210 | 8 | 33 | 555 | 49 | 570 | 0.0 | 600 |
| MS.gene014446.t1 | MTR_5g038410 | 50.185 | 540 | 232 | 11 | 47 | 554 | 1 | 535 | 0.0 | 529 |
| MS.gene014446.t1 | MTR_8g102900 | 44.776 | 536 | 275 | 11 | 29 | 554 | 108 | 632 | 1.61e-156 | 461 |
| MS.gene014446.t1 | MTR_3g075520 | 45.665 | 519 | 260 | 12 | 47 | 554 | 1 | 508 | 8.63e-151 | 442 |
| MS.gene014446.t1 | MTR_6g088300 | 43.455 | 550 | 282 | 11 | 24 | 554 | 45 | 584 | 3.29e-150 | 444 |
| MS.gene014446.t1 | MTR_4g019520 | 44.365 | 559 | 275 | 15 | 2 | 554 | 3 | 531 | 1.27e-142 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014446.t1 | AT1G75620 | 62.687 | 536 | 182 | 8 | 24 | 554 | 24 | 546 | 0.0 | 676 |
| MS.gene014446.t1 | AT1G19900 | 61.553 | 528 | 192 | 7 | 30 | 554 | 28 | 547 | 0.0 | 668 |
| MS.gene014446.t1 | AT3G57620 | 52.355 | 552 | 235 | 8 | 17 | 554 | 9 | 546 | 0.0 | 595 |
| MS.gene014446.t1 | AT1G14430 | 52.952 | 542 | 227 | 10 | 28 | 554 | 36 | 564 | 0.0 | 554 |
| MS.gene014446.t1 | AT5G19580 | 43.856 | 529 | 282 | 9 | 32 | 555 | 76 | 594 | 1.28e-154 | 455 |
| MS.gene014446.t1 | AT1G67290 | 45.826 | 539 | 271 | 13 | 29 | 555 | 86 | 615 | 1.12e-153 | 454 |
| MS.gene014446.t1 | AT3G53950 | 43.962 | 530 | 271 | 13 | 33 | 555 | 34 | 544 | 5.01e-146 | 432 |
Find 144 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGAAGGTTCGGTTTC+AGG | 0.153751 | 3.2:+90028160 | MS.gene014446:CDS |
| CTTGACCCAACTAAACTATT+TGG | 0.191110 | 3.2:-90027891 | None:intergenic |
| GGGTCCGCTGGTTGGGAATC+AGG | 0.259329 | 3.2:+90027834 | MS.gene014446:CDS |
| CCATAACCCAACTCGGATTC+TGG | 0.259537 | 3.2:-90027728 | None:intergenic |
| TTTGCTGTAGCATCTTTCTT+TGG | 0.263378 | 3.2:-90027342 | None:intergenic |
| GAGCTGTGGGGTCCGCTGGT+TGG | 0.280888 | 3.2:+90027826 | MS.gene014446:CDS |
| AGCTGTGGGGTCCGCTGGTT+GGG | 0.303802 | 3.2:+90027827 | MS.gene014446:CDS |
| GAGAAAGAATGTGTGTTAAA+AGG | 0.305651 | 3.2:-90028233 | None:intergenic |
| ATTTCAATTTCGTTTGTGAT+TGG | 0.306731 | 3.2:-90028130 | None:intergenic |
| TTTCAATTTCGTTTGTGATT+GGG | 0.313192 | 3.2:-90028129 | None:intergenic |
| GGTGCAAGAATGGGTGAATT+TGG | 0.321385 | 3.2:-90028350 | None:intergenic |
| TATAAACCAAATAGTTTAGT+TGG | 0.321989 | 3.2:+90027885 | MS.gene014446:CDS |
| GAGTTCCAAGTCAGGGTGTT+TGG | 0.329231 | 3.2:+90028408 | MS.gene014446:CDS |
| TCACCTTCATATTTAGAGAT+AGG | 0.343841 | 3.2:+90028068 | MS.gene014446:CDS |
| CTCAATGAATCAAAGGTTGT+TGG | 0.356448 | 3.2:+90028253 | MS.gene014446:CDS |
| CCTGAACTAGGATAACTTCT+AGG | 0.356988 | 3.2:-90027549 | None:intergenic |
| GACGGTAGGGTCCTTGTTGC+CGG | 0.364460 | 3.2:+90027978 | MS.gene014446:CDS |
| CCTGACTTGGAACTCCTTGA+TGG | 0.365435 | 3.2:-90028400 | None:intergenic |
| AACATGCACTTACCATCTTC+TGG | 0.367278 | 3.2:-90027029 | None:intergenic |
| TTCGTTTGTGATTGGGGTGC+AGG | 0.367770 | 3.2:-90028122 | None:intergenic |
| TCATTTGTTTGTACAAGAAA+TGG | 0.367997 | 3.2:-90027381 | None:intergenic |
| TTCACCCATTCTTGCACCTC+CGG | 0.369292 | 3.2:+90028355 | MS.gene014446:CDS |
| CAATGATGTGCGTCCTATAA+TGG | 0.369536 | 3.2:+90028094 | MS.gene014446:CDS |
| CCTAGAAGTTATCCTAGTTC+AGG | 0.375775 | 3.2:+90027549 | MS.gene014446:CDS |
| GGTGCAGGAAACACCATTAT+AGG | 0.377276 | 3.2:-90028107 | None:intergenic |
| CCAGAATCCGAGTTGGGTTA+TGG | 0.377736 | 3.2:+90027728 | MS.gene014446:CDS |
| TCCATCTGGTAGCATGTGAT+TGG | 0.385416 | 3.2:-90027271 | None:intergenic |
| AGTTCCAAGTCAGGGTGTTT+GGG | 0.390210 | 3.2:+90028409 | MS.gene014446:CDS |
| GGATCTCCACCTGGTATTGT+AGG | 0.395977 | 3.2:-90027528 | None:intergenic |
| AATTCTTGCCAATCACAGTT+TGG | 0.398038 | 3.2:-90026989 | None:intergenic |
| AGGAACACCAGATGTTAGTT+TGG | 0.402465 | 3.2:-90026880 | None:intergenic |
| AGAGGGATAAGAAGATGAAT+GGG | 0.417257 | 3.2:-90026572 | None:intergenic |
| ATCCATGTCCAAACTGTGAT+TGG | 0.418189 | 3.2:+90026981 | MS.gene014446:CDS |
| TAGCTGAAAATTAGAGTAGT+TGG | 0.420687 | 3.2:-90028433 | None:intergenic |
| GGGGTATTATTTACTATTTG+TGG | 0.425229 | 3.2:+90028376 | MS.gene014446:CDS |
| TTCAATTTCGTTTGTGATTG+GGG | 0.425388 | 3.2:-90028128 | None:intergenic |
| CGTCGTTGAAACCACCGGTT+TGG | 0.425942 | 3.2:-90026934 | None:intergenic |
| GGTGGAGCTGTGGGGTCCGC+TGG | 0.431880 | 3.2:+90027822 | MS.gene014446:CDS |
| GATGGAAAACAAATTATCAT+TGG | 0.434354 | 3.2:+90027288 | MS.gene014446:CDS |
| TAAAGAAACGGATTCAAAAC+CGG | 0.438673 | 3.2:-90027864 | None:intergenic |
| TTTAGTTGAAGCTGAGGTAA+TGG | 0.439525 | 3.2:+90027611 | MS.gene014446:CDS |
| GAGAGGGATAAGAAGATGAA+TGG | 0.442115 | 3.2:-90026573 | None:intergenic |
| TCACCCATTCTTGCACCTCC+GGG | 0.443200 | 3.2:+90028356 | MS.gene014446:CDS |
| CCATCTCCGGCTATAGCCGC+TGG | 0.443224 | 3.2:+90026626 | MS.gene014446:CDS |
| ATAAACCAAATAGTTTAGTT+GGG | 0.445735 | 3.2:+90027886 | MS.gene014446:CDS |
| TTGATTAATGGTGGAGCTGT+GGG | 0.457680 | 3.2:+90027813 | MS.gene014446:CDS |
| TACATTCGTGGAATACTAGA+AGG | 0.467996 | 3.2:-90027930 | None:intergenic |
| CACCGTGACGCTTCCATCTC+CGG | 0.471512 | 3.2:+90026613 | MS.gene014446:CDS |
| CTATTTGGTTTATAAAGAAA+CGG | 0.475010 | 3.2:-90027876 | None:intergenic |
| ATCAACAAAACGTCGCCGTT+AGG | 0.480941 | 3.2:-90027795 | None:intergenic |
| CCATCAAGGAGTTCCAAGTC+AGG | 0.481604 | 3.2:+90028400 | MS.gene014446:CDS |
| ATTACCTCAGCTTCAACTAA+AGG | 0.482611 | 3.2:-90027609 | None:intergenic |
| ACGACATCTACCGTTGGATA+AGG | 0.490170 | 3.2:-90026765 | None:intergenic |
| ACTAACATCTGGTGTTCCTC+CGG | 0.491911 | 3.2:+90026884 | MS.gene014446:CDS |
| AACGGAACTCTTATCCAAAC+CGG | 0.494388 | 3.2:+90026920 | MS.gene014446:CDS |
| TCCGTTGGGAGAGACGGAAC+CGG | 0.494468 | 3.2:-90026903 | None:intergenic |
| ATTCTTTCTCAATGAATCAA+AGG | 0.503052 | 3.2:+90028246 | MS.gene014446:CDS |
| ATACCCCGGAGGTGCAAGAA+TGG | 0.506107 | 3.2:-90028360 | None:intergenic |
| CCATCTTCTGGCTGAGAGGC+CGG | 0.506753 | 3.2:-90027017 | None:intergenic |
| GAAGTTCCGTTGGAAACAAA+CGG | 0.507226 | 3.2:-90028031 | None:intergenic |
| AATCCTATCTCTAAATATGA+AGG | 0.509007 | 3.2:-90028071 | None:intergenic |
| TTGGGAATCAGGTCGTAATC+CGG | 0.509273 | 3.2:+90027845 | MS.gene014446:CDS |
| AACCGACCAGAATCCGAGTT+GGG | 0.511154 | 3.2:+90027722 | MS.gene014446:CDS |
| GCTTCTAACCGAAGTTCCGT+TGG | 0.513496 | 3.2:-90028041 | None:intergenic |
| TACCCCGGAGGTGCAAGAAT+GGG | 0.517149 | 3.2:-90028359 | None:intergenic |
| GAAGGTTCGGTTTCAGGTGA+AGG | 0.518039 | 3.2:+90028166 | MS.gene014446:CDS |
| TTACTATTTGTGGTCCATCA+AGG | 0.519156 | 3.2:+90028386 | MS.gene014446:CDS |
| ACGACGGAGACCGTGCCGTT+AGG | 0.519475 | 3.2:+90026951 | MS.gene014446:CDS |
| GAAGCTGAGGTAATGGTTTG+TGG | 0.520107 | 3.2:+90027618 | MS.gene014446:CDS |
| TGGACCCAAACACCCTGACT+TGG | 0.521685 | 3.2:-90028413 | None:intergenic |
| GTTTGTGGTGGAGCTCCAAA+AGG | 0.521735 | 3.2:+90027633 | MS.gene014446:CDS |
| TGGGTTATGGAAACTATGCC+AGG | 0.521749 | 3.2:+90027741 | MS.gene014446:CDS |
| ACAGTTTGGACATGGATTGA+AGG | 0.522901 | 3.2:-90026975 | None:intergenic |
| TTGGTATTGCCACTTCAACT+TGG | 0.523039 | 3.2:-90028331 | None:intergenic |
| TCTTCATCCAAACTAACATC+TGG | 0.523551 | 3.2:+90026873 | MS.gene014446:CDS |
| TGTCCACCAGCGGCTATAGC+CGG | 0.524473 | 3.2:-90026632 | None:intergenic |
| GTTTGTTTCCAACGGAACTT+CGG | 0.525030 | 3.2:+90028033 | MS.gene014446:CDS |
| AAGTTCCGTTGGAAACAAAC+GGG | 0.529792 | 3.2:-90028030 | None:intergenic |
| GTTGATTAATGGTGGAGCTG+TGG | 0.531889 | 3.2:+90027812 | MS.gene014446:CDS |
| TCCGGTTCCGTCTCTCCCAA+CGG | 0.533508 | 3.2:+90026902 | MS.gene014446:CDS |
| GATCTCCACCTGGTATTGTA+GGG | 0.534802 | 3.2:-90027527 | None:intergenic |
| TGCCAATCACAGTTTGGACA+TGG | 0.534978 | 3.2:-90026983 | None:intergenic |
| GGTTTGGATAAGAGTTCCGT+TGG | 0.535136 | 3.2:-90026918 | None:intergenic |
| GTAAAATTGTAATTTACATG+AGG | 0.535472 | 3.2:-90028008 | None:intergenic |
| AAGAGTTCCGTTGGGAGAGA+CGG | 0.539396 | 3.2:-90026909 | None:intergenic |
| GTTTCAGGTGAAGGCAACAT+TGG | 0.544359 | 3.2:+90028175 | MS.gene014446:CDS |
| TAAAATTGTAATTTACATGA+GGG | 0.545993 | 3.2:-90028007 | None:intergenic |
| CCGGCCTCTCAGCCAGAAGA+TGG | 0.548508 | 3.2:+90027017 | MS.gene014446:CDS |
| GGAAAACAAATTATCATTGG+AGG | 0.549342 | 3.2:+90027291 | MS.gene014446:CDS |
| AAAACAGCAGAACCTGAACT+AGG | 0.549812 | 3.2:-90027561 | None:intergenic |
| TAGTTTGGATGAAGAGTGGT+CGG | 0.556525 | 3.2:-90026865 | None:intergenic |
| GCAGTTGAGTGATACATTCG+TGG | 0.557371 | 3.2:-90027942 | None:intergenic |
| CCAGCGGCTATAGCCGGAGA+TGG | 0.561644 | 3.2:-90026626 | None:intergenic |
| ATCGGAGCTTTGAATACATG+TGG | 0.566801 | 3.2:+90027687 | MS.gene014446:CDS |
| CTATAGCCGCTGGTGGACAA+TGG | 0.567409 | 3.2:+90026636 | MS.gene014446:CDS |
| TAGAAACGACGTCATATTCG+AGG | 0.576878 | 3.2:-90026835 | None:intergenic |
| GTCTCCGTCGTTGAAACCAC+CGG | 0.579861 | 3.2:-90026939 | None:intergenic |
| AAAGCCTTTAGTTGAAGCTG+AGG | 0.581362 | 3.2:+90027605 | MS.gene014446:CDS |
| ATTTACATGAGGGTTGCTAC+CGG | 0.582071 | 3.2:-90027997 | None:intergenic |
| ATCAACATACCAAGTTGAAG+TGG | 0.590631 | 3.2:+90028322 | MS.gene014446:CDS |
| GAGCTTTGAATACATGTGGT+CGG | 0.592341 | 3.2:+90027691 | MS.gene014446:CDS |
| AAAACATACCCTACAATACC+AGG | 0.592824 | 3.2:+90027519 | MS.gene014446:CDS |
| ACCAATCACATGCTACCAGA+TGG | 0.594953 | 3.2:+90027270 | MS.gene014446:CDS |
| GTTTGGATAAGAGTTCCGTT+GGG | 0.598861 | 3.2:-90026917 | None:intergenic |
| TCTCCGGCTATAGCCGCTGG+TGG | 0.600687 | 3.2:+90026629 | MS.gene014446:CDS |
| TTGAGAATCCAAAATCTGTA+CGG | 0.601146 | 3.2:-90026736 | None:intergenic |
| TAACCGACCAGAATCCGAGT+TGG | 0.603354 | 3.2:+90027721 | MS.gene014446:CDS |
| CTTACCATCTTCTGGCTGAG+AGG | 0.606260 | 3.2:-90027021 | None:intergenic |
| GTAGATATTATAATAATGAG+AGG | 0.610209 | 3.2:-90026590 | None:intergenic |
| AGAAACGACGTCATATTCGA+GGG | 0.612926 | 3.2:-90026834 | None:intergenic |
| ATGTTAGTTTGGATGAAGAG+TGG | 0.626268 | 3.2:-90026869 | None:intergenic |
| GTGTAGTAATTGCATATGCA+TGG | 0.626532 | 3.2:-90026690 | None:intergenic |
| AACCCAACTCGGATTCTGGT+CGG | 0.628839 | 3.2:-90027724 | None:intergenic |
| CAGCTCTTACAAAACAACAT+TGG | 0.629515 | 3.2:+90026659 | MS.gene014446:CDS |
| ATTAACACGACATCTACCGT+TGG | 0.632840 | 3.2:-90026771 | None:intergenic |
| AGCCGGAGATGGAAGCGTCA+CGG | 0.634477 | 3.2:-90026615 | None:intergenic |
| TCAAACTTATCCTTATCCAA+CGG | 0.635919 | 3.2:+90026755 | MS.gene014446:CDS |
| GAGGGTTGCTACCGGCAACA+AGG | 0.641296 | 3.2:-90027989 | None:intergenic |
| CACCCATTCTTGCACCTCCG+GGG | 0.644030 | 3.2:+90028357 | MS.gene014446:CDS |
| TATAATCAAACAAAATAGCA+CGG | 0.644345 | 3.2:-90027479 | None:intergenic |
| ACATGGATTGAAGGTCCTAA+CGG | 0.648259 | 3.2:-90026966 | None:intergenic |
| CATCAAGGAGTTCCAAGTCA+GGG | 0.650832 | 3.2:+90028401 | MS.gene014446:CDS |
| ATAGTTTCCATAACCCAACT+CGG | 0.651608 | 3.2:-90027735 | None:intergenic |
| TAGATATTATAATAATGAGA+GGG | 0.654289 | 3.2:-90026589 | None:intergenic |
| GATTGAAGGTCCTAACGGCA+CGG | 0.654947 | 3.2:-90026961 | None:intergenic |
| AGGCGGTGCATACATTGTCA+CGG | 0.661155 | 3.2:-90028213 | None:intergenic |
| GGAACTCTTATCCAAACCGG+TGG | 0.663220 | 3.2:+90026923 | MS.gene014446:CDS |
| TGATTAATGGTGGAGCTGTG+GGG | 0.663789 | 3.2:+90027814 | MS.gene014446:CDS |
| GTTGGGAGAGACGGAACCGG+AGG | 0.666779 | 3.2:-90026900 | None:intergenic |
| ACAAATAGTAAATAATACCC+CGG | 0.667706 | 3.2:-90028374 | None:intergenic |
| GAGGGATAAGAAGATGAATG+GGG | 0.671217 | 3.2:-90026571 | None:intergenic |
| TCACTCATAACTCTTCCACC+TGG | 0.673279 | 3.2:-90027759 | None:intergenic |
| GAGCTGCCATTGTCCACCAG+CGG | 0.673603 | 3.2:-90026642 | None:intergenic |
| ACGACCTGATTCCCAACCAG+CGG | 0.683895 | 3.2:-90027838 | None:intergenic |
| GTTTGATTATAACAGCAACA+AGG | 0.685381 | 3.2:+90027491 | MS.gene014446:CDS |
| GCTGAGGTAATGGTTTGTGG+TGG | 0.690816 | 3.2:+90027621 | MS.gene014446:CDS |
| CAAACCGGTGGTTTCAACGA+CGG | 0.697076 | 3.2:+90026935 | MS.gene014446:CDS |
| GATTGGCAAGAATTCAACGC+CGG | 0.705232 | 3.2:+90026998 | MS.gene014446:CDS |
| TAACTTCTAGGATCTCCACC+TGG | 0.707322 | 3.2:-90027537 | None:intergenic |
| ACATACCCTACAATACCAGG+TGG | 0.726590 | 3.2:+90027522 | MS.gene014446:CDS |
| GTTATGGAAACTATGCCAGG+TGG | 0.735089 | 3.2:+90027744 | MS.gene014446:CDS |
| CGGAGATGGAAGCGTCACGG+TGG | 0.736799 | 3.2:-90026612 | None:intergenic |
| AATAGTAAATAATACCCCGG+AGG | 0.749616 | 3.2:-90028371 | None:intergenic |
| AAAGAATGTGTGTTAAAAGG+CGG | 0.786062 | 3.2:-90028230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAATTTACATGA+GGG | - | chr3.2:90028010-90028029 | None:intergenic | 15.0% |
| !! | TAGATATTATAATAATGAGA+GGG | - | chr3.2:90026592-90026611 | None:intergenic | 15.0% |
| !! | TATTATTTACTATCAAACTA+AGG | - | chr3.2:90027199-90027218 | None:intergenic | 15.0% |
| !!! | ATCATTTCTTAGTATTTTTT+TGG | + | chr3.2:90027077-90027096 | MS.gene014446:intron | 15.0% |
| !! | ATAAACCAAATAGTTTAGTT+GGG | + | chr3.2:90027886-90027905 | MS.gene014446:CDS | 20.0% |
| !! | GTAAAATTGTAATTTACATG+AGG | - | chr3.2:90028011-90028030 | None:intergenic | 20.0% |
| !! | GTAGATATTATAATAATGAG+AGG | - | chr3.2:90026593-90026612 | None:intergenic | 20.0% |
| !! | TATAAACCAAATAGTTTAGT+TGG | + | chr3.2:90027885-90027904 | MS.gene014446:CDS | 20.0% |
| !! | TATAATCAAACAAAATAGCA+CGG | - | chr3.2:90027482-90027501 | None:intergenic | 20.0% |
| !! | TCTTATGAAAAAACATTACA+AGG | + | chr3.2:90027657-90027676 | MS.gene014446:CDS | 20.0% |
| !!! | CTATTTGGTTTATAAAGAAA+CGG | - | chr3.2:90027879-90027898 | None:intergenic | 20.0% |
| ! | AATCCTATCTCTAAATATGA+AGG | - | chr3.2:90028074-90028093 | None:intergenic | 25.0% |
| ! | ACAAATAGTAAATAATACCC+CGG | - | chr3.2:90028377-90028396 | None:intergenic | 25.0% |
| ! | AGTAGTAGTAAAAATGTTGT+TGG | + | chr3.2:90028290-90028309 | MS.gene014446:CDS | 25.0% |
| ! | ATTCTTTCTCAATGAATCAA+AGG | + | chr3.2:90028246-90028265 | MS.gene014446:CDS | 25.0% |
| ! | ATTTCAATTTCGTTTGTGAT+TGG | - | chr3.2:90028133-90028152 | None:intergenic | 25.0% |
| ! | GAAGTAACTATATCTCTAAT+AGG | + | chr3.2:90027241-90027260 | MS.gene014446:intron | 25.0% |
| ! | GATGGAAAACAAATTATCAT+TGG | + | chr3.2:90027288-90027307 | MS.gene014446:CDS | 25.0% |
| ! | TAAGTGCATGTTTAGATTAA+CGG | + | chr3.2:90027040-90027059 | MS.gene014446:intron | 25.0% |
| ! | TCATTTGTTTGTACAAGAAA+TGG | - | chr3.2:90027384-90027403 | None:intergenic | 25.0% |
| ! | TCTACATTGAGAAAAACAAA+CGG | - | chr3.2:90027432-90027451 | None:intergenic | 25.0% |
| ! | TTTCAATTTCGTTTGTGATT+GGG | - | chr3.2:90028132-90028151 | None:intergenic | 25.0% |
| !!! | ACATTACAAGGTAGTTTTAT+CGG | + | chr3.2:90027669-90027688 | MS.gene014446:CDS | 25.0% |
| !!! | ATGATAATTTGTTTTCCATC+TGG | - | chr3.2:90027288-90027307 | None:intergenic | 25.0% |
| !!! | GTTTTTTCATAAGAACCTTT+TGG | - | chr3.2:90027651-90027670 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCTCAATGTAGA+TGG | + | chr3.2:90027432-90027451 | MS.gene014446:CDS | 25.0% |
| AAAGAATGTGTGTTAAAAGG+CGG | - | chr3.2:90028233-90028252 | None:intergenic | 30.0% | |
| AATAAGAAATATAAGTCCCG+TGG | - | chr3.2:90027157-90027176 | None:intergenic | 30.0% | |
| ATAAGAAATATAAGTCCCGT+GGG | - | chr3.2:90027156-90027175 | None:intergenic | 30.0% | |
| CTACATTGAGAAAAACAAAC+GGG | - | chr3.2:90027431-90027450 | None:intergenic | 30.0% | |
| GAAATACGCTCAAAAATTGA+AGG | + | chr3.2:90028148-90028167 | MS.gene014446:CDS | 30.0% | |
| GAGAAAGAATGTGTGTTAAA+AGG | - | chr3.2:90028236-90028255 | None:intergenic | 30.0% | |
| GGAAAACAAATTATCATTGG+AGG | + | chr3.2:90027291-90027310 | MS.gene014446:CDS | 30.0% | |
| GTTTGATTATAACAGCAACA+AGG | + | chr3.2:90027491-90027510 | MS.gene014446:CDS | 30.0% | |
| TCAAACTTATCCTTATCCAA+CGG | + | chr3.2:90026755-90026774 | MS.gene014446:CDS | 30.0% | |
| TCACCTTCATATTTAGAGAT+AGG | + | chr3.2:90028068-90028087 | MS.gene014446:CDS | 30.0% | |
| TTCAATTTCGTTTGTGATTG+GGG | - | chr3.2:90028131-90028150 | None:intergenic | 30.0% | |
| TTGAGAATCCAAAATCTGTA+CGG | - | chr3.2:90026739-90026758 | None:intergenic | 30.0% | |
| ! | ATTTTTGACCGTACAGATTT+TGG | + | chr3.2:90026728-90026747 | MS.gene014446:CDS | 30.0% |
| ! | GACATGATTTTACTTCCTAA+CGG | + | chr3.2:90027780-90027799 | MS.gene014446:CDS | 30.0% |
| ! | GGGGTATTATTTACTATTTG+TGG | + | chr3.2:90028376-90028395 | MS.gene014446:CDS | 30.0% |
| ! | TAAAGAAACGGATTCAAAAC+CGG | - | chr3.2:90027867-90027886 | None:intergenic | 30.0% |
| !! | TTTTTCACAACTTGTTCTTG+TGG | - | chr3.2:90026797-90026816 | None:intergenic | 30.0% |
| AAAACATACCCTACAATACC+AGG | + | chr3.2:90027519-90027538 | MS.gene014446:CDS | 35.0% | |
| AATAGTAAATAATACCCCGG+AGG | - | chr3.2:90028374-90028393 | None:intergenic | 35.0% | |
| AATTCTTGCCAATCACAGTT+TGG | - | chr3.2:90026992-90027011 | None:intergenic | 35.0% | |
| ACGCTCAAAAATTGAAGGTT+CGG | + | chr3.2:90028153-90028172 | MS.gene014446:CDS | 35.0% | |
| AGAGGGATAAGAAGATGAAT+GGG | - | chr3.2:90026575-90026594 | None:intergenic | 35.0% | |
| ATAGTTTCCATAACCCAACT+CGG | - | chr3.2:90027738-90027757 | None:intergenic | 35.0% | |
| ATTACCTCAGCTTCAACTAA+AGG | - | chr3.2:90027612-90027631 | None:intergenic | 35.0% | |
| CAGCTCTTACAAAACAACAT+TGG | + | chr3.2:90026659-90026678 | MS.gene014446:CDS | 35.0% | |
| CTCAATGAATCAAAGGTTGT+TGG | + | chr3.2:90028253-90028272 | MS.gene014446:CDS | 35.0% | |
| CTTGACCCAACTAAACTATT+TGG | - | chr3.2:90027894-90027913 | None:intergenic | 35.0% | |
| GTGTAGTAATTGCATATGCA+TGG | - | chr3.2:90026693-90026712 | None:intergenic | 35.0% | |
| TACATTCGTGGAATACTAGA+AGG | - | chr3.2:90027933-90027952 | None:intergenic | 35.0% | |
| TACGGTCAAAAATGATGACA+CGG | - | chr3.2:90026721-90026740 | None:intergenic | 35.0% | |
| TCTTCATCCAAACTAACATC+TGG | + | chr3.2:90026873-90026892 | MS.gene014446:CDS | 35.0% | |
| TTACTATTTGTGGTCCATCA+AGG | + | chr3.2:90028386-90028405 | MS.gene014446:CDS | 35.0% | |
| TTTAGTTGAAGCTGAGGTAA+TGG | + | chr3.2:90027611-90027630 | MS.gene014446:CDS | 35.0% | |
| ! | AAAATTGAAGGTTCGGTTTC+AGG | + | chr3.2:90028160-90028179 | MS.gene014446:CDS | 35.0% |
| ! | ATCAACATACCAAGTTGAAG+TGG | + | chr3.2:90028322-90028341 | MS.gene014446:CDS | 35.0% |
| ! | ATGTTAGTTTGGATGAAGAG+TGG | - | chr3.2:90026872-90026891 | None:intergenic | 35.0% |
| ! | GGCTTTTGTAAGTTTCTTAG+AGG | - | chr3.2:90027591-90027610 | None:intergenic | 35.0% |
| ! | TTTGCTGTAGCATCTTTCTT+TGG | - | chr3.2:90027345-90027364 | None:intergenic | 35.0% |
| ! | TTTTACCCGTTTGTTTCCAA+CGG | + | chr3.2:90028025-90028044 | MS.gene014446:CDS | 35.0% |
| !! | GACGTTTTGTTGATTAATGG+TGG | + | chr3.2:90027804-90027823 | MS.gene014446:CDS | 35.0% |
| AAAACAGCAGAACCTGAACT+AGG | - | chr3.2:90027564-90027583 | None:intergenic | 40.0% | |
| AAAGCCTTTAGTTGAAGCTG+AGG | + | chr3.2:90027605-90027624 | MS.gene014446:CDS | 40.0% | |
| AACATGCACTTACCATCTTC+TGG | - | chr3.2:90027032-90027051 | None:intergenic | 40.0% | |
| AACGGAACTCTTATCCAAAC+CGG | + | chr3.2:90026920-90026939 | MS.gene014446:CDS | 40.0% | |
| AAGTTCCGTTGGAAACAAAC+GGG | - | chr3.2:90028033-90028052 | None:intergenic | 40.0% | |
| AGAAACGACGTCATATTCGA+GGG | - | chr3.2:90026837-90026856 | None:intergenic | 40.0% | |
| AGGAACACCAGATGTTAGTT+TGG | - | chr3.2:90026883-90026902 | None:intergenic | 40.0% | |
| ATCCATGTCCAAACTGTGAT+TGG | + | chr3.2:90026981-90027000 | MS.gene014446:CDS | 40.0% | |
| ATTAACACGACATCTACCGT+TGG | - | chr3.2:90026774-90026793 | None:intergenic | 40.0% | |
| ATTGTTCTTAGCTAAGCCCA+CGG | + | chr3.2:90027137-90027156 | MS.gene014446:intron | 40.0% | |
| ATTTACATGAGGGTTGCTAC+CGG | - | chr3.2:90028000-90028019 | None:intergenic | 40.0% | |
| CAATGATGTGCGTCCTATAA+TGG | + | chr3.2:90028094-90028113 | MS.gene014446:CDS | 40.0% | |
| CCTAGAAGTTATCCTAGTTC+AGG | + | chr3.2:90027549-90027568 | MS.gene014446:CDS | 40.0% | |
| CCTGAACTAGGATAACTTCT+AGG | - | chr3.2:90027552-90027571 | None:intergenic | 40.0% | |
| GAAGTTCCGTTGGAAACAAA+CGG | - | chr3.2:90028034-90028053 | None:intergenic | 40.0% | |
| GAGAGGGATAAGAAGATGAA+TGG | - | chr3.2:90026576-90026595 | None:intergenic | 40.0% | |
| GAGGGATAAGAAGATGAATG+GGG | - | chr3.2:90026574-90026593 | None:intergenic | 40.0% | |
| GGCAACATTGGTGAAAAACA+TGG | + | chr3.2:90028187-90028206 | MS.gene014446:CDS | 40.0% | |
| GTTTGGATAAGAGTTCCGTT+GGG | - | chr3.2:90026920-90026939 | None:intergenic | 40.0% | |
| GTTTGTTTCCAACGGAACTT+CGG | + | chr3.2:90028033-90028052 | MS.gene014446:CDS | 40.0% | |
| TAGAAACGACGTCATATTCG+AGG | - | chr3.2:90026838-90026857 | None:intergenic | 40.0% | |
| TAGTTTGGATGAAGAGTGGT+CGG | - | chr3.2:90026868-90026887 | None:intergenic | 40.0% | |
| ! | ACAGTTTGGACATGGATTGA+AGG | - | chr3.2:90026978-90026997 | None:intergenic | 40.0% |
| ! | ACATGGATTGAAGGTCCTAA+CGG | - | chr3.2:90026969-90026988 | None:intergenic | 40.0% |
| ! | TGTTTTGCTAAGAGACGGTA+GGG | + | chr3.2:90027965-90027984 | MS.gene014446:CDS | 40.0% |
| ! | TTGATTAATGGTGGAGCTGT+GGG | + | chr3.2:90027813-90027832 | MS.gene014446:CDS | 40.0% |
| ! | TTGGTATTGCCACTTCAACT+TGG | - | chr3.2:90028334-90028353 | None:intergenic | 40.0% |
| !! | ATCGGAGCTTTGAATACATG+TGG | + | chr3.2:90027687-90027706 | MS.gene014446:CDS | 40.0% |
| !! | GAGCTTTGAATACATGTGGT+CGG | + | chr3.2:90027691-90027710 | MS.gene014446:CDS | 40.0% |
| !! | GGCGACGTTTTGTTGATTAA+TGG | + | chr3.2:90027801-90027820 | MS.gene014446:CDS | 40.0% |
| !!! | ACTGCTGTTTTGCTAAGAGA+CGG | + | chr3.2:90027960-90027979 | MS.gene014446:CDS | 40.0% |
| ACATACCCTACAATACCAGG+TGG | + | chr3.2:90027522-90027541 | MS.gene014446:CDS | 45.0% | |
| ACCAATCACATGCTACCAGA+TGG | + | chr3.2:90027270-90027289 | MS.gene014446:CDS | 45.0% | |
| ACGACATCTACCGTTGGATA+AGG | - | chr3.2:90026768-90026787 | None:intergenic | 45.0% | |
| ACTAACATCTGGTGTTCCTC+CGG | + | chr3.2:90026884-90026903 | MS.gene014446:CDS | 45.0% | |
| ATCAACAAAACGTCGCCGTT+AGG | - | chr3.2:90027798-90027817 | None:intergenic | 45.0% | |
| CATCAAGGAGTTCCAAGTCA+GGG | + | chr3.2:90028401-90028420 | MS.gene014446:CDS | 45.0% | |
| GATCTCCACCTGGTATTGTA+GGG | - | chr3.2:90027530-90027549 | None:intergenic | 45.0% | |
| GATTGGCAAGAATTCAACGC+CGG | + | chr3.2:90026998-90027017 | MS.gene014446:CDS | 45.0% | |
| GCAGTTGAGTGATACATTCG+TGG | - | chr3.2:90027945-90027964 | None:intergenic | 45.0% | |
| GGTGCAAGAATGGGTGAATT+TGG | - | chr3.2:90028353-90028372 | None:intergenic | 45.0% | |
| GGTGCAGGAAACACCATTAT+AGG | - | chr3.2:90028110-90028129 | None:intergenic | 45.0% | |
| GGTTTGGATAAGAGTTCCGT+TGG | - | chr3.2:90026921-90026940 | None:intergenic | 45.0% | |
| GTTATGGAAACTATGCCAGG+TGG | + | chr3.2:90027744-90027763 | MS.gene014446:CDS | 45.0% | |
| TCACTCATAACTCTTCCACC+TGG | - | chr3.2:90027762-90027781 | None:intergenic | 45.0% | |
| TCCATCTGGTAGCATGTGAT+TGG | - | chr3.2:90027274-90027293 | None:intergenic | 45.0% | |
| TGCCAATCACAGTTTGGACA+TGG | - | chr3.2:90026986-90027005 | None:intergenic | 45.0% | |
| TGGGTTATGGAAACTATGCC+AGG | + | chr3.2:90027741-90027760 | MS.gene014446:CDS | 45.0% | |
| TTGGGAATCAGGTCGTAATC+CGG | + | chr3.2:90027845-90027864 | MS.gene014446:CDS | 45.0% | |
| TTGTTCTTAGCTAAGCCCAC+GGG | + | chr3.2:90027138-90027157 | MS.gene014446:intron | 45.0% | |
| ! | AGTTCCAAGTCAGGGTGTTT+GGG | + | chr3.2:90028409-90028428 | MS.gene014446:CDS | 45.0% |
| ! | CTGTTTTGCTAAGAGACGGT+AGG | + | chr3.2:90027964-90027983 | MS.gene014446:CDS | 45.0% |
| ! | GAAGCTGAGGTAATGGTTTG+TGG | + | chr3.2:90027618-90027637 | MS.gene014446:CDS | 45.0% |
| ! | GTTGATTAATGGTGGAGCTG+TGG | + | chr3.2:90027812-90027831 | MS.gene014446:CDS | 45.0% |
| ! | GTTTCAGGTGAAGGCAACAT+TGG | + | chr3.2:90028175-90028194 | MS.gene014446:CDS | 45.0% |
| ! | TGATTAATGGTGGAGCTGTG+GGG | + | chr3.2:90027814-90027833 | MS.gene014446:CDS | 45.0% |
| !! | TAACTTCTAGGATCTCCACC+TGG | - | chr3.2:90027540-90027559 | None:intergenic | 45.0% |
| AACCCAACTCGGATTCTGGT+CGG | - | chr3.2:90027727-90027746 | None:intergenic | 50.0% | |
| AACCGACCAGAATCCGAGTT+GGG | + | chr3.2:90027722-90027741 | MS.gene014446:CDS | 50.0% | |
| AAGAGTTCCGTTGGGAGAGA+CGG | - | chr3.2:90026912-90026931 | None:intergenic | 50.0% | |
| AGGCGGTGCATACATTGTCA+CGG | - | chr3.2:90028216-90028235 | None:intergenic | 50.0% | |
| CAAACCGGTGGTTTCAACGA+CGG | + | chr3.2:90026935-90026954 | MS.gene014446:CDS | 50.0% | |
| CCATAACCCAACTCGGATTC+TGG | - | chr3.2:90027731-90027750 | None:intergenic | 50.0% | |
| CCATCAAGGAGTTCCAAGTC+AGG | + | chr3.2:90028400-90028419 | MS.gene014446:CDS | 50.0% | |
| GATTGAAGGTCCTAACGGCA+CGG | - | chr3.2:90026964-90026983 | None:intergenic | 50.0% | |
| GCTTCTAACCGAAGTTCCGT+TGG | - | chr3.2:90028044-90028063 | None:intergenic | 50.0% | |
| GGAACTCTTATCCAAACCGG+TGG | + | chr3.2:90026923-90026942 | MS.gene014446:CDS | 50.0% | |
| GGATCTCCACCTGGTATTGT+AGG | - | chr3.2:90027531-90027550 | None:intergenic | 50.0% | |
| TAACCGACCAGAATCCGAGT+TGG | + | chr3.2:90027721-90027740 | MS.gene014446:CDS | 50.0% | |
| TTCACCCATTCTTGCACCTC+CGG | + | chr3.2:90028355-90028374 | MS.gene014446:CDS | 50.0% | |
| TTCGTTTGTGATTGGGGTGC+AGG | - | chr3.2:90028125-90028144 | None:intergenic | 50.0% | |
| ! | CCAGAATCCGAGTTGGGTTA+TGG | + | chr3.2:90027728-90027747 | MS.gene014446:CDS | 50.0% |
| ! | CTTACCATCTTCTGGCTGAG+AGG | - | chr3.2:90027024-90027043 | None:intergenic | 50.0% |
| ! | GAAGGTTCGGTTTCAGGTGA+AGG | + | chr3.2:90028166-90028185 | MS.gene014446:CDS | 50.0% |
| ! | GAGTTCCAAGTCAGGGTGTT+TGG | + | chr3.2:90028408-90028427 | MS.gene014446:CDS | 50.0% |
| ! | GCTGAGGTAATGGTTTGTGG+TGG | + | chr3.2:90027621-90027640 | MS.gene014446:CDS | 50.0% |
| ! | GTTTGTGGTGGAGCTCCAAA+AGG | + | chr3.2:90027633-90027652 | MS.gene014446:CDS | 50.0% |
| !! | CCTGACTTGGAACTCCTTGA+TGG | - | chr3.2:90028403-90028422 | None:intergenic | 50.0% |
| ACGACCTGATTCCCAACCAG+CGG | - | chr3.2:90027841-90027860 | None:intergenic | 55.0% | |
| GTCTCCGTCGTTGAAACCAC+CGG | - | chr3.2:90026942-90026961 | None:intergenic | 55.0% | |
| TCACCCATTCTTGCACCTCC+GGG | + | chr3.2:90028356-90028375 | MS.gene014446:CDS | 55.0% | |
| TGGACCCAAACACCCTGACT+TGG | - | chr3.2:90028416-90028435 | None:intergenic | 55.0% | |
| ! | ATACCCCGGAGGTGCAAGAA+TGG | - | chr3.2:90028363-90028382 | None:intergenic | 55.0% |
| ! | CGTCGTTGAAACCACCGGTT+TGG | - | chr3.2:90026937-90026956 | None:intergenic | 55.0% |
| ! | CTATAGCCGCTGGTGGACAA+TGG | + | chr3.2:90026636-90026655 | MS.gene014446:CDS | 55.0% |
| ! | TACCCCGGAGGTGCAAGAAT+GGG | - | chr3.2:90028362-90028381 | None:intergenic | 55.0% |
| CACCCATTCTTGCACCTCCG+GGG | + | chr3.2:90028357-90028376 | MS.gene014446:CDS | 60.0% | |
| CACCGTGACGCTTCCATCTC+CGG | + | chr3.2:90026613-90026632 | MS.gene014446:CDS | 60.0% | |
| GACGGTAGGGTCCTTGTTGC+CGG | + | chr3.2:90027978-90027997 | MS.gene014446:CDS | 60.0% | |
| GAGCTGCCATTGTCCACCAG+CGG | - | chr3.2:90026645-90026664 | None:intergenic | 60.0% | |
| GAGGGTTGCTACCGGCAACA+AGG | - | chr3.2:90027992-90028011 | None:intergenic | 60.0% | |
| TCCGGTTCCGTCTCTCCCAA+CGG | + | chr3.2:90026902-90026921 | MS.gene014446:CDS | 60.0% | |
| TCCGTTGGGAGAGACGGAAC+CGG | - | chr3.2:90026906-90026925 | None:intergenic | 60.0% | |
| TGTCCACCAGCGGCTATAGC+CGG | - | chr3.2:90026635-90026654 | None:intergenic | 60.0% | |
| ! | CCATCTTCTGGCTGAGAGGC+CGG | - | chr3.2:90027020-90027039 | None:intergenic | 60.0% |
| !! | AGCCGGAGATGGAAGCGTCA+CGG | - | chr3.2:90026618-90026637 | None:intergenic | 60.0% |
| CCAGCGGCTATAGCCGGAGA+TGG | - | chr3.2:90026629-90026648 | None:intergenic | 65.0% | |
| CCATCTCCGGCTATAGCCGC+TGG | + | chr3.2:90026626-90026645 | MS.gene014446:CDS | 65.0% | |
| CCGGCCTCTCAGCCAGAAGA+TGG | + | chr3.2:90027017-90027036 | MS.gene014446:CDS | 65.0% | |
| GTTGGGAGAGACGGAACCGG+AGG | - | chr3.2:90026903-90026922 | None:intergenic | 65.0% | |
| TCTCCGGCTATAGCCGCTGG+TGG | + | chr3.2:90026629-90026648 | MS.gene014446:CDS | 65.0% | |
| ! | ACGACGGAGACCGTGCCGTT+AGG | + | chr3.2:90026951-90026970 | MS.gene014446:CDS | 65.0% |
| ! | AGCTGTGGGGTCCGCTGGTT+GGG | + | chr3.2:90027827-90027846 | MS.gene014446:CDS | 65.0% |
| ! | GGGTCCGCTGGTTGGGAATC+AGG | + | chr3.2:90027834-90027853 | MS.gene014446:CDS | 65.0% |
| !! | CGGAGATGGAAGCGTCACGG+TGG | - | chr3.2:90026615-90026634 | None:intergenic | 65.0% |
| GAGCTGTGGGGTCCGCTGGT+TGG | + | chr3.2:90027826-90027845 | MS.gene014446:CDS | 70.0% | |
| GGTGGAGCTGTGGGGTCCGC+TGG | + | chr3.2:90027822-90027841 | MS.gene014446:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 90026554 | 90028445 | 90026554 | ID=MS.gene014446 |
| chr3.2 | mRNA | 90026554 | 90028445 | 90026554 | ID=MS.gene014446.t1;Parent=MS.gene014446 |
| chr3.2 | exon | 90026554 | 90027038 | 90026554 | ID=MS.gene014446.t1.exon1;Parent=MS.gene014446.t1 |
| chr3.2 | CDS | 90026554 | 90027038 | 90026554 | ID=cds.MS.gene014446.t1;Parent=MS.gene014446.t1 |
| chr3.2 | exon | 90027263 | 90028445 | 90027263 | ID=MS.gene014446.t1.exon2;Parent=MS.gene014446.t1 |
| chr3.2 | CDS | 90027263 | 90028445 | 90027263 | ID=cds.MS.gene014446.t1;Parent=MS.gene014446.t1 |
| Gene Sequence |
| Protein sequence |
