AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22907


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22907.t1 MTR_7g114530 97.441 508 12 1 1 507 63 570 0.0 1024
MS.gene22907.t1 MTR_1g023570 59.136 509 197 5 1 507 44 543 0.0 611
MS.gene22907.t1 MTR_3g113210 57.558 516 203 8 1 507 47 555 0.0 584
MS.gene22907.t1 MTR_5g038410 52.963 540 215 9 1 506 1 535 0.0 573
MS.gene22907.t1 MTR_6g004960 53.996 513 223 7 1 507 11 516 0.0 552
MS.gene22907.t1 MTR_3g075520 44.660 515 269 9 1 506 1 508 1.31e-152 445
MS.gene22907.t1 MTR_4g019520 47.358 511 243 11 1 506 42 531 1.78e-145 428
MS.gene22907.t1 MTR_8g102900 44.874 517 264 13 1 506 126 632 1.14e-141 422
MS.gene22907.t1 MTR_6g088300 40.494 526 282 11 1 506 70 584 9.28e-129 387
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22907.t1 AT3G57620 63.922 510 168 7 1 506 49 546 0.0 674
MS.gene22907.t1 AT1G14430 55.364 522 205 10 1 506 55 564 0.0 570
MS.gene22907.t1 AT1G19900 53.333 510 227 7 1 506 45 547 0.0 554
MS.gene22907.t1 AT1G75620 54.028 509 220 7 1 506 49 546 0.0 550
MS.gene22907.t1 AT3G53950 43.945 512 267 10 1 507 48 544 7.47e-148 434
MS.gene22907.t1 AT5G19580 43.564 505 269 11 9 507 100 594 4.68e-143 424
MS.gene22907.t1 AT1G67290 44.773 507 262 12 9 507 119 615 8.45e-141 419

Find 0 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTGTAATCAAATAAAA+TGG - 51732:12248-12267 None:intergenic 15.0%
!! ATAATTATAATGCGATTATC+CGG - 51732:12043-12062 None:intergenic 20.0%
!! GATAATCGCATTATAATTAT+TGG + 51732:12043-12062 MS.gene22907:CDS 20.0%
!! GGTGATGTTATTATAATTAA+CGG + 51732:12559-12578 MS.gene22907:CDS 20.0%
!! GTAAAATTGTAATTTACATG+TGG - 51732:12772-12791 None:intergenic 20.0%
!!! CATGTAAATTACAATTTTAC+CGG + 51732:12772-12791 MS.gene22907:CDS 20.0%
! AAAAACAAAAGGTAATAACC+TGG - 51732:13120-13139 None:intergenic 25.0%
! AAAATGAAAAGGTTTCCATT+AGG - 51732:12211-12230 None:intergenic 25.0%
! AATCGCATTATAATTATTGG+TGG + 51732:12046-12065 MS.gene22907:CDS 25.0%
! ATATTCTCAATAATCCAACA+AGG - 51732:12496-12515 None:intergenic 25.0%
! ATTATAATAACATCACCGTT+AGG - 51732:12556-12575 None:intergenic 25.0%
! GTTTCAATGAAAATTGTGAT+TGG + 51732:11960-11979 MS.gene22907:CDS 25.0%
!! GAAGAAGAAGTTATTGTTTT+AGG - 51732:12100-12119 None:intergenic 25.0%
!! TCACAATTTTCATTGAAACA+TGG - 51732:11959-11978 None:intergenic 25.0%
!!! AGGTTATTACCTTTTGTTTT+TGG + 51732:13119-13138 MS.gene22907:CDS 25.0%
!!! GTTTTATTACGTGACATTTA+CGG + 51732:12915-12934 MS.gene22907:CDS 25.0%
AAAGAATGTGTAGTAAACGA+CGG - 51732:12988-13007 None:intergenic 30.0%
AAATGCCTCTAAGCTTAAAT+CGG - 51732:12812-12831 None:intergenic 30.0%
ACTAAACCGTTTATCTGATT+TGG - 51732:12662-12681 None:intergenic 30.0%
ATGTGGATTTCTCAAAGTAA+CGG + 51732:12462-12481 MS.gene22907:CDS 30.0%
CAGAAACCAAATCAGATAAA+CGG + 51732:12653-12672 MS.gene22907:CDS 30.0%
GACATGTTAATTCTACCTAA+CGG + 51732:12538-12557 MS.gene22907:CDS 30.0%
GATTATTGAGAATATGCCAA+TGG + 51732:12501-12520 MS.gene22907:CDS 30.0%
TGAAGTTTCCGTTAAGTTAT+TGG + 51732:12960-12979 MS.gene22907:CDS 30.0%
TGCAACAAATCAAATACTAC+CGG + 51732:12021-12040 MS.gene22907:CDS 30.0%
TTAACACAATTGCAGATGAA+TGG - 51732:12717-12736 None:intergenic 30.0%
TTCTTTCGGATAAGTAACTT+GGG - 51732:11994-12013 None:intergenic 30.0%
! ATGTCACCAATACCATTTTA+GGG + 51732:12884-12903 MS.gene22907:CDS 30.0%
! TCGTTTACTACACATTCTTT+TGG + 51732:12988-13007 MS.gene22907:CDS 30.0%
!!! ATTCTTTTGGAATGAATCAG+AGG + 51732:13001-13020 MS.gene22907:CDS 30.0%
!!! CAATACCATTTTAGGGTATA+GGG + 51732:12891-12910 MS.gene22907:CDS 30.0%
AAACACCCTATACCCTAAAA+TGG - 51732:12899-12918 None:intergenic 35.0%
AAAGAATTTCCTGAGATTCC+AGG + 51732:12280-12299 MS.gene22907:CDS 35.0%
AACAAAAGGTAATAACCTGG+TGG - 51732:13117-13136 None:intergenic 35.0%
AAGCTACAATCATGATCTGT+GGG + 51732:12377-12396 MS.gene22907:CDS 35.0%
AGTGTCTGTTTGTACAGTTA+AGG - 51732:11846-11865 None:intergenic 35.0%
ATTTATTATGCTACCGTGGT+TGG + 51732:13069-13088 MS.gene22907:CDS 35.0%
CCTATACCCTAAAATGGTAT+TGG - 51732:12893-12912 None:intergenic 35.0%
CTGTTTGTACAGTTAAGGAT+CGG - 51732:11841-11860 None:intergenic 35.0%
CTTCTTTCGGATAAGTAACT+TGG - 51732:11995-12014 None:intergenic 35.0%
GGATATTTATTATGCTACCG+TGG + 51732:13065-13084 MS.gene22907:CDS 35.0%
GTGTGTTTGCGAAAATGAAA+AGG - 51732:12222-12241 None:intergenic 35.0%
GTTACTTATCCGAAAGAAGA+TGG + 51732:11996-12015 MS.gene22907:CDS 35.0%
GTTATTATAATTAACGGCGC+TGG + 51732:12565-12584 MS.gene22907:CDS 35.0%
TAACTGTACAAACAGACACT+TGG + 51732:11846-11865 MS.gene22907:CDS 35.0%
TCAAATCTCCCTCTTTCAAA+TGG + 51732:11728-11747 MS.gene22907:CDS 35.0%
TCTGCAATTGTGTTAAGAGA+TGG + 51732:12721-12740 MS.gene22907:CDS 35.0%
TCTGTTGAACGGAAAATTAC+CGG - 51732:12637-12656 None:intergenic 35.0%
TGTTGCATACCATCTTCTTT+CGG - 51732:12008-12027 None:intergenic 35.0%
TTAGGTAGAAGATGAACGAA+TGG - 51732:12193-12212 None:intergenic 35.0%
TTCGTTCATCTTCTACCTAA+TGG + 51732:12193-12212 MS.gene22907:CDS 35.0%
TTGAAAGAGGGAGATTTGAA+GGG - 51732:11727-11746 None:intergenic 35.0%
TTTGAAAGAGGGAGATTTGA+AGG - 51732:11728-11747 None:intergenic 35.0%
! AAAATTACCGGTGTTAAGAC+AGG - 51732:12625-12644 None:intergenic 35.0%
! CATGTCACCAATACCATTTT+AGG + 51732:12883-12902 MS.gene22907:CDS 35.0%
! GAAGTTGATTGGTGTAACAA+TGG + 51732:13035-13054 MS.gene22907:CDS 35.0%
! TACGGTAGCTAATTTTGCTT+CGG + 51732:12933-12952 MS.gene22907:CDS 35.0%
!! AATCCACATGTTTTAAGTGC+TGG - 51732:12451-12470 None:intergenic 35.0%
!! AGAGATGGAAGAGTTTTAGT+TGG + 51732:12736-12755 MS.gene22907:CDS 35.0%
!! CTGATTTGGTTTCTGTTGAA+CGG - 51732:12648-12667 None:intergenic 35.0%
!! GGATATAAGTTGTTTTCGCT+TGG - 51732:12172-12191 None:intergenic 35.0%
!! TTTTAAGGGCAGTATCGTAT+GGG - 51732:11769-11788 None:intergenic 35.0%
!!! ATGGTGGTTTTGAAGTTGAT+TGG + 51732:13024-13043 MS.gene22907:CDS 35.0%
!!! CCAATACCATTTTAGGGTAT+AGG + 51732:12890-12909 MS.gene22907:CDS 35.0%
!!! GAGATTTGGTTTTCGTCTAA+TGG - 51732:12352-12371 None:intergenic 35.0%
!!! TTTTGGAATGAATCAGAGGA+TGG + 51732:13005-13024 MS.gene22907:CDS 35.0%
AACAGAATGAGCAGTGCAAT+CGG - 51732:11792-11811 None:intergenic 40.0%
AACGGTACATTAGTCCAAAC+CGG + 51732:11893-11912 MS.gene22907:CDS 40.0%
AGAACAGATGATCCTGAACT+AGG - 51732:12325-12344 None:intergenic 40.0%
AGACGAAAACCAAATCTCCA+TGG + 51732:12354-12373 MS.gene22907:CDS 40.0%
AGCTACAATCATGATCTGTG+GGG + 51732:12378-12397 MS.gene22907:CDS 40.0%
ATCGGTTGGAAATTCAACTC+CGG - 51732:12794-12813 None:intergenic 40.0%
ATGCCAATGGCAAGAGTAAT+GGG + 51732:12514-12533 MS.gene22907:CDS 40.0%
ATGCCAGCACTTAAAACATG+TGG + 51732:12445-12464 MS.gene22907:CDS 40.0%
CCTCATAACTATCCTAGTTC+AGG + 51732:12310-12329 MS.gene22907:CDS 40.0%
CCTGAACTAGGATAGTTATG+AGG - 51732:12313-12332 None:intergenic 40.0%
GAAGCTACAATCATGATCTG+TGG + 51732:12376-12395 MS.gene22907:CDS 40.0%
GAGATTTGAAGGGCCAAAAT+CGG - 51732:11717-11736 None:intergenic 40.0%
GATCATGATTGTAGCTTCCA+TGG - 51732:12374-12393 None:intergenic 40.0%
TAAGGATCGGAATGTGTTTG+TGG - 51732:11828-11847 None:intergenic 40.0%
TATGCCAATGGCAAGAGTAA+TGG + 51732:12513-12532 MS.gene22907:CDS 40.0%
TCAGGTTCTGTTCTCTCAAA+CGG + 51732:11875-11894 MS.gene22907:CDS 40.0%
TGGTGTAACAATGGTGAGTT+TGG + 51732:13044-13063 MS.gene22907:CDS 40.0%
TTGTAGCTTCCATGGAGATT+TGG - 51732:12366-12385 None:intergenic 40.0%
! GACACTTGCCATTTGAAAGA+GGG - 51732:11739-11758 None:intergenic 40.0%
! TCCAACCGATTTAAGCTTAG+AGG + 51732:12804-12823 MS.gene22907:CDS 40.0%
!! AGCAGTGCAATCGGTTTTAA+GGG - 51732:11783-11802 None:intergenic 40.0%
!! ATTTTCGACCGAACCGATTT+TGG + 51732:11701-11720 MS.gene22907:CDS 40.0%
!! TAACGGATTCGAATCCTTGT+TGG + 51732:12479-12498 MS.gene22907:CDS 40.0%
!! TTCAAATGGCAAGTGTCGAA+TGG + 51732:11742-11761 MS.gene22907:CDS 40.0%
!!! CCTTTTGTTTTTGGTGCATG+CGG + 51732:13128-13147 MS.gene22907:CDS 40.0%
!!! CTTTTGTTTTTGGTGCATGC+GGG + 51732:13129-13148 MS.gene22907:CDS 40.0%
!!! GATGGAAGAGTTTTAGTTGG+TGG + 51732:12739-12758 MS.gene22907:CDS 40.0%
!!! GTTTTAAGGGCAGTATCGTA+TGG - 51732:11770-11789 None:intergenic 40.0%
AGGATCATTCGAAGCTGCAA+AGG + 51732:12411-12430 MS.gene22907:CDS 45.0%
ATCAAACTCGGGCGACAAAT+AGG - 51732:12842-12861 None:intergenic 45.0%
CCGCATGCACCAAAAACAAA+AGG - 51732:13131-13150 None:intergenic 45.0%
GAATTTCCTGAGATTCCAGG+TGG + 51732:12283-12302 MS.gene22907:CDS 45.0%
GCAGATGAATGGTAGAGTCT+AGG - 51732:12706-12725 None:intergenic 45.0%
GCCTCTAAGCTTAAATCGGT+TGG - 51732:12808-12827 None:intergenic 45.0%
GCTACAATCATGATCTGTGG+GGG + 51732:12379-12398 MS.gene22907:CDS 45.0%
GGATCATTCGAAGCTGCAAA+GGG + 51732:12412-12431 MS.gene22907:CDS 45.0%
GGTGCAATCTCTTGAGTAGA+TGG - 51732:13096-13115 None:intergenic 45.0%
GTTTGAGAGAACAGAACCTG+AGG - 51732:11876-11895 None:intergenic 45.0%
TAGAGTCTAGGTCTAGAAGC+TGG - 51732:12694-12713 None:intergenic 45.0%
TAGTTATGAGGATCACCACC+TGG - 51732:12301-12320 None:intergenic 45.0%
TCAAACTCGGGCGACAAATA+GGG - 51732:12841-12860 None:intergenic 45.0%
TCTCCCATTACTCTTGCCAT+TGG - 51732:12520-12539 None:intergenic 45.0%
TGGAATGAATCAGAGGATGG+TGG + 51732:13008-13027 MS.gene22907:CDS 45.0%
TTCACCATCGTTGAAACCAC+CGG - 51732:11915-11934 None:intergenic 45.0%
TTGAAGGGCCAAAATCGGTT+CGG - 51732:11712-11731 None:intergenic 45.0%
TTGAGTAGATGGTCCAACCA+CGG - 51732:13085-13104 None:intergenic 45.0%
! ATAATTAACGGCGCTGGATC+AGG + 51732:12571-12590 MS.gene22907:CDS 45.0%
! CGACACTTGCCATTTGAAAG+AGG - 51732:11740-11759 None:intergenic 45.0%
! CGACGGTGCCAATAACTTAA+CGG - 51732:12971-12990 None:intergenic 45.0%
! TTGGTGACATGCCAAATCGT+TGG - 51732:12874-12893 None:intergenic 45.0%
!! GAGCAGTGCAATCGGTTTTA+AGG - 51732:11784-11803 None:intergenic 45.0%
!! GTTGTTTTCGCTTGGATCGT+TGG - 51732:12164-12183 None:intergenic 45.0%
ACTCAAGAGATTGCACCACC+AGG + 51732:13099-13118 MS.gene22907:CDS 50.0%
CAAACCGGTGGTTTCAACGA+TGG + 51732:11908-11927 MS.gene22907:CDS 50.0%
GCGTCAACCTGTCTTAACAC+CGG + 51732:12615-12634 MS.gene22907:CDS 50.0%
GGTACAGCTGGATGGGAAAA+CGG + 51732:12592-12611 MS.gene22907:CDS 50.0%
GGTACATTAGTCCAAACCGG+TGG + 51732:11896-11915 MS.gene22907:CDS 50.0%
GTACAGCTGGATGGGAAAAC+GGG + 51732:12593-12612 MS.gene22907:CDS 50.0%
TGGATCAGGTACAGCTGGAT+GGG + 51732:12585-12604 MS.gene22907:CDS 50.0%
TGTGCCTAGTTCAGGTGAGT+GGG + 51732:13152-13171 MS.gene22907:CDS 50.0%
TTTGTCGCCCGAGTTTGATC+TGG + 51732:12843-12862 MS.gene22907:CDS 50.0%
! CATCGTTGAAACCACCGGTT+TGG - 51732:11910-11929 None:intergenic 50.0%
!! ACAGACACTTGGTGTTCCTC+AGG + 51732:11857-11876 MS.gene22907:CDS 50.0%
!! CGCTTGGATCGTTGGTTTCT+TGG - 51732:12156-12175 None:intergenic 50.0%
AACTCGGGCGACAAATAGGG+CGG - 51732:12838-12857 None:intergenic 55.0%
ATCTGGTGCGGCCAACGATT+TGG + 51732:12860-12879 MS.gene22907:CDS 55.0%
CTGGATCAGGTACAGCTGGA+TGG + 51732:12584-12603 MS.gene22907:CDS 55.0%
GCAGCTTCGAATGATCCTCG+AGG - 51732:12409-12428 None:intergenic 55.0%
GGATCACCACCTGGAATCTC+AGG - 51732:12292-12311 None:intergenic 55.0%
GTGTGCCTAGTTCAGGTGAG+TGG + 51732:13151-13170 MS.gene22907:CDS 55.0%
TGCACCCACTCACCTGAACT+AGG - 51732:13159-13178 None:intergenic 55.0%
TGGCCGCACCAGATCAAACT+CGG - 51732:12854-12873 None:intergenic 55.0%
CATGCGGGTGTGCCTAGTTC+AGG + 51732:13144-13163 MS.gene22907:CDS 60.0%
CGCCCGAGTTTGATCTGGTG+CGG + 51732:12848-12867 MS.gene22907:CDS 60.0%
GGCCGCACCAGATCAAACTC+GGG - 51732:12853-12872 None:intergenic 60.0%
! GGCGCTGGATCAGGTACAGC+TGG + 51732:12580-12599 MS.gene22907:CDS 65.0%
!! ATCTGTGGGGGAGCACCTCG+AGG + 51732:12391-12410 MS.gene22907:CDS 65.0%


Chromosome Type Strat End Strand Name
51732 gene 11665 13188 11665 ID=MS.gene22907
51732 mRNA 11665 13188 11665 ID=MS.gene22907.t1;Parent=MS.gene22907
51732 exon 11665 13188 11665 ID=MS.gene22907.t1.exon1;Parent=MS.gene22907.t1
51732 CDS 11665 13188 11665 ID=cds.MS.gene22907.t1;Parent=MS.gene22907.t1
Gene Sequence

>MS.gene22907

ATGCACATGCAACTTTCACACAACAACAAAATCATAATTTTCGACCGAACCGATTTTGGCCCTTCAAATCTCCCTCTTTCAAATGGCAAGTGTCGAATGGACCCATACGATACTGCCCTTAAAACCGATTGCACTGCTCATTCTGTTCTATACGACATTGCCACAAACACATTCCGATCCTTAACTGTACAAACAGACACTTGGTGTTCCTCAGGTTCTGTTCTCTCAAACGGTACATTAGTCCAAACCGGTGGTTTCAACGATGGTGAACGTCGAATTCGAATGTTCACGCCATGTTTCAATGAAAATTGTGATTGGATAGAATTCCCAAGTTACTTATCCGAAAGAAGATGGTATGCAACAAATCAAATACTACCGGATAATCGCATTATAATTATTGGTGGTAGAAGACAATTCAACTATGAATTCTTTCCTAAAACAATAACTTCTTCTTCTTCGTCTTCTTCATCAATTCATCTATCTTTTCTCCAAGAAACCAACGATCCAAGCGAAAACAACTTATATCCATTCGTTCATCTTCTACCTAATGGAAACCTTTTCATTTTCGCAAACACACGATCCATTTTATTTGATTACAAACAAAACGTTGTTGTTAAAGAATTTCCTGAGATTCCAGGTGGTGATCCTCATAACTATCCTAGTTCAGGATCATCTGTTCTTCTTCCATTAGACGAAAACCAAATCTCCATGGAAGCTACAATCATGATCTGTGGGGGAGCACCTCGAGGATCATTCGAAGCTGCAAAGGGAAAGAACTTCATGCCAGCACTTAAAACATGTGGATTTCTCAAAGTAACGGATTCGAATCCTTGTTGGATTATTGAGAATATGCCAATGGCAAGAGTAATGGGAGACATGTTAATTCTACCTAACGGTGATGTTATTATAATTAACGGCGCTGGATCAGGTACAGCTGGATGGGAAAACGGGCGTCAACCTGTCTTAACACCGGTAATTTTCCGTTCAACAGAAACCAAATCAGATAAACGGTTTAGTGTAATGTCACCAGCTTCTAGACCTAGACTCTACCATTCATCTGCAATTGTGTTAAGAGATGGAAGAGTTTTAGTTGGTGGTAGTAATCCACATGTAAATTACAATTTTACCGGAGTTGAATTTCCAACCGATTTAAGCTTAGAGGCATTTTCTCCGCCCTATTTGTCGCCCGAGTTTGATCTGGTGCGGCCAACGATTTGGCATGTCACCAATACCATTTTAGGGTATAGGGTGTTTTATTACGTGACATTTACGGTAGCTAATTTTGCTTCGGCAAGTGAAGTTTCCGTTAAGTTATTGGCACCGTCGTTTACTACACATTCTTTTGGAATGAATCAGAGGATGGTGGTTTTGAAGTTGATTGGTGTAACAATGGTGAGTTTGGATATTTATTATGCTACCGTGGTTGGACCATCTACTCAAGAGATTGCACCACCAGGTTATTACCTTTTGTTTTTGGTGCATGCGGGTGTGCCTAGTTCAGGTGAGTGGGTGCAACTCATGTAA

Protein sequence

>MS.gene22907.t1

MHMQLSHNNKIIIFDRTDFGPSNLPLSNGKCRMDPYDTALKTDCTAHSVLYDIATNTFRSLTVQTDTWCSSGSVLSNGTLVQTGGFNDGERRIRMFTPCFNENCDWIEFPSYLSERRWYATNQILPDNRIIIIGGRRQFNYEFFPKTITSSSSSSSSIHLSFLQETNDPSENNLYPFVHLLPNGNLFIFANTRSILFDYKQNVVVKEFPEIPGGDPHNYPSSGSSVLLPLDENQISMEATIMICGGAPRGSFEAAKGKNFMPALKTCGFLKVTDSNPCWIIENMPMARVMGDMLILPNGDVIIINGAGSGTAGWENGRQPVLTPVIFRSTETKSDKRFSVMSPASRPRLYHSSAIVLRDGRVLVGGSNPHVNYNFTGVEFPTDLSLEAFSPPYLSPEFDLVRPTIWHVTNTILGYRVFYYVTFTVANFASASEVSVKLLAPSFTTHSFGMNQRMVVLKLIGVTMVSLDIYYATVVGPSTQEIAPPGYYLLFLVHAGVPSSGEWVQLM