Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22907.t1 | XP_003626387.1 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.40E-285 | 991.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22907.t1 | Q3HRQ2 | 44.0 | 509 | 268 | 10 | 1 | 507 | 29 | 522 | 4.2e-116 | 419.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22907.t1 | G7L0T4 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.0e-285 | 991.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene22907 | MS.gene82837 | PPI |
MS.gene22907 | MS.gene014446 | PPI |
MS.gene22907 | MS.gene064736 | PPI |
MS.gene22907 | MS.gene27027 | PPI |
MS.gene22907 | MS.gene69423 | PPI |
MS.gene22907 | MS.gene63972 | PPI |
MS.gene22907 | MS.gene42280 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22907.t1 | MTR_7g114530 | 97.441 | 508 | 12 | 1 | 1 | 507 | 63 | 570 | 0.0 | 1024 |
MS.gene22907.t1 | MTR_1g023570 | 59.136 | 509 | 197 | 5 | 1 | 507 | 44 | 543 | 0.0 | 611 |
MS.gene22907.t1 | MTR_3g113210 | 57.558 | 516 | 203 | 8 | 1 | 507 | 47 | 555 | 0.0 | 584 |
MS.gene22907.t1 | MTR_5g038410 | 52.963 | 540 | 215 | 9 | 1 | 506 | 1 | 535 | 0.0 | 573 |
MS.gene22907.t1 | MTR_6g004960 | 53.996 | 513 | 223 | 7 | 1 | 507 | 11 | 516 | 0.0 | 552 |
MS.gene22907.t1 | MTR_3g075520 | 44.660 | 515 | 269 | 9 | 1 | 506 | 1 | 508 | 1.31e-152 | 445 |
MS.gene22907.t1 | MTR_4g019520 | 47.358 | 511 | 243 | 11 | 1 | 506 | 42 | 531 | 1.78e-145 | 428 |
MS.gene22907.t1 | MTR_8g102900 | 44.874 | 517 | 264 | 13 | 1 | 506 | 126 | 632 | 1.14e-141 | 422 |
MS.gene22907.t1 | MTR_6g088300 | 40.494 | 526 | 282 | 11 | 1 | 506 | 70 | 584 | 9.28e-129 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22907.t1 | AT3G57620 | 63.922 | 510 | 168 | 7 | 1 | 506 | 49 | 546 | 0.0 | 674 |
MS.gene22907.t1 | AT1G14430 | 55.364 | 522 | 205 | 10 | 1 | 506 | 55 | 564 | 0.0 | 570 |
MS.gene22907.t1 | AT1G19900 | 53.333 | 510 | 227 | 7 | 1 | 506 | 45 | 547 | 0.0 | 554 |
MS.gene22907.t1 | AT1G75620 | 54.028 | 509 | 220 | 7 | 1 | 506 | 49 | 546 | 0.0 | 550 |
MS.gene22907.t1 | AT3G53950 | 43.945 | 512 | 267 | 10 | 1 | 507 | 48 | 544 | 7.47e-148 | 434 |
MS.gene22907.t1 | AT5G19580 | 43.564 | 505 | 269 | 11 | 9 | 507 | 100 | 594 | 4.68e-143 | 424 |
MS.gene22907.t1 | AT1G67290 | 44.773 | 507 | 262 | 12 | 9 | 507 | 119 | 615 | 8.45e-141 | 419 |
Find 0 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTTTGTAATCAAATAAAA+TGG | - | 51732:12248-12267 | None:intergenic | 15.0% |
!! | ATAATTATAATGCGATTATC+CGG | - | 51732:12043-12062 | None:intergenic | 20.0% |
!! | GATAATCGCATTATAATTAT+TGG | + | 51732:12043-12062 | MS.gene22907:CDS | 20.0% |
!! | GGTGATGTTATTATAATTAA+CGG | + | 51732:12559-12578 | MS.gene22907:CDS | 20.0% |
!! | GTAAAATTGTAATTTACATG+TGG | - | 51732:12772-12791 | None:intergenic | 20.0% |
!!! | CATGTAAATTACAATTTTAC+CGG | + | 51732:12772-12791 | MS.gene22907:CDS | 20.0% |
! | AAAAACAAAAGGTAATAACC+TGG | - | 51732:13120-13139 | None:intergenic | 25.0% |
! | AAAATGAAAAGGTTTCCATT+AGG | - | 51732:12211-12230 | None:intergenic | 25.0% |
! | AATCGCATTATAATTATTGG+TGG | + | 51732:12046-12065 | MS.gene22907:CDS | 25.0% |
! | ATATTCTCAATAATCCAACA+AGG | - | 51732:12496-12515 | None:intergenic | 25.0% |
! | ATTATAATAACATCACCGTT+AGG | - | 51732:12556-12575 | None:intergenic | 25.0% |
! | GTTTCAATGAAAATTGTGAT+TGG | + | 51732:11960-11979 | MS.gene22907:CDS | 25.0% |
!! | GAAGAAGAAGTTATTGTTTT+AGG | - | 51732:12100-12119 | None:intergenic | 25.0% |
!! | TCACAATTTTCATTGAAACA+TGG | - | 51732:11959-11978 | None:intergenic | 25.0% |
!!! | AGGTTATTACCTTTTGTTTT+TGG | + | 51732:13119-13138 | MS.gene22907:CDS | 25.0% |
!!! | GTTTTATTACGTGACATTTA+CGG | + | 51732:12915-12934 | MS.gene22907:CDS | 25.0% |
AAAGAATGTGTAGTAAACGA+CGG | - | 51732:12988-13007 | None:intergenic | 30.0% | |
AAATGCCTCTAAGCTTAAAT+CGG | - | 51732:12812-12831 | None:intergenic | 30.0% | |
ACTAAACCGTTTATCTGATT+TGG | - | 51732:12662-12681 | None:intergenic | 30.0% | |
ATGTGGATTTCTCAAAGTAA+CGG | + | 51732:12462-12481 | MS.gene22907:CDS | 30.0% | |
CAGAAACCAAATCAGATAAA+CGG | + | 51732:12653-12672 | MS.gene22907:CDS | 30.0% | |
GACATGTTAATTCTACCTAA+CGG | + | 51732:12538-12557 | MS.gene22907:CDS | 30.0% | |
GATTATTGAGAATATGCCAA+TGG | + | 51732:12501-12520 | MS.gene22907:CDS | 30.0% | |
TGAAGTTTCCGTTAAGTTAT+TGG | + | 51732:12960-12979 | MS.gene22907:CDS | 30.0% | |
TGCAACAAATCAAATACTAC+CGG | + | 51732:12021-12040 | MS.gene22907:CDS | 30.0% | |
TTAACACAATTGCAGATGAA+TGG | - | 51732:12717-12736 | None:intergenic | 30.0% | |
TTCTTTCGGATAAGTAACTT+GGG | - | 51732:11994-12013 | None:intergenic | 30.0% | |
! | ATGTCACCAATACCATTTTA+GGG | + | 51732:12884-12903 | MS.gene22907:CDS | 30.0% |
! | TCGTTTACTACACATTCTTT+TGG | + | 51732:12988-13007 | MS.gene22907:CDS | 30.0% |
!!! | ATTCTTTTGGAATGAATCAG+AGG | + | 51732:13001-13020 | MS.gene22907:CDS | 30.0% |
!!! | CAATACCATTTTAGGGTATA+GGG | + | 51732:12891-12910 | MS.gene22907:CDS | 30.0% |
AAACACCCTATACCCTAAAA+TGG | - | 51732:12899-12918 | None:intergenic | 35.0% | |
AAAGAATTTCCTGAGATTCC+AGG | + | 51732:12280-12299 | MS.gene22907:CDS | 35.0% | |
AACAAAAGGTAATAACCTGG+TGG | - | 51732:13117-13136 | None:intergenic | 35.0% | |
AAGCTACAATCATGATCTGT+GGG | + | 51732:12377-12396 | MS.gene22907:CDS | 35.0% | |
AGTGTCTGTTTGTACAGTTA+AGG | - | 51732:11846-11865 | None:intergenic | 35.0% | |
ATTTATTATGCTACCGTGGT+TGG | + | 51732:13069-13088 | MS.gene22907:CDS | 35.0% | |
CCTATACCCTAAAATGGTAT+TGG | - | 51732:12893-12912 | None:intergenic | 35.0% | |
CTGTTTGTACAGTTAAGGAT+CGG | - | 51732:11841-11860 | None:intergenic | 35.0% | |
CTTCTTTCGGATAAGTAACT+TGG | - | 51732:11995-12014 | None:intergenic | 35.0% | |
GGATATTTATTATGCTACCG+TGG | + | 51732:13065-13084 | MS.gene22907:CDS | 35.0% | |
GTGTGTTTGCGAAAATGAAA+AGG | - | 51732:12222-12241 | None:intergenic | 35.0% | |
GTTACTTATCCGAAAGAAGA+TGG | + | 51732:11996-12015 | MS.gene22907:CDS | 35.0% | |
GTTATTATAATTAACGGCGC+TGG | + | 51732:12565-12584 | MS.gene22907:CDS | 35.0% | |
TAACTGTACAAACAGACACT+TGG | + | 51732:11846-11865 | MS.gene22907:CDS | 35.0% | |
TCAAATCTCCCTCTTTCAAA+TGG | + | 51732:11728-11747 | MS.gene22907:CDS | 35.0% | |
TCTGCAATTGTGTTAAGAGA+TGG | + | 51732:12721-12740 | MS.gene22907:CDS | 35.0% | |
TCTGTTGAACGGAAAATTAC+CGG | - | 51732:12637-12656 | None:intergenic | 35.0% | |
TGTTGCATACCATCTTCTTT+CGG | - | 51732:12008-12027 | None:intergenic | 35.0% | |
TTAGGTAGAAGATGAACGAA+TGG | - | 51732:12193-12212 | None:intergenic | 35.0% | |
TTCGTTCATCTTCTACCTAA+TGG | + | 51732:12193-12212 | MS.gene22907:CDS | 35.0% | |
TTGAAAGAGGGAGATTTGAA+GGG | - | 51732:11727-11746 | None:intergenic | 35.0% | |
TTTGAAAGAGGGAGATTTGA+AGG | - | 51732:11728-11747 | None:intergenic | 35.0% | |
! | AAAATTACCGGTGTTAAGAC+AGG | - | 51732:12625-12644 | None:intergenic | 35.0% |
! | CATGTCACCAATACCATTTT+AGG | + | 51732:12883-12902 | MS.gene22907:CDS | 35.0% |
! | GAAGTTGATTGGTGTAACAA+TGG | + | 51732:13035-13054 | MS.gene22907:CDS | 35.0% |
! | TACGGTAGCTAATTTTGCTT+CGG | + | 51732:12933-12952 | MS.gene22907:CDS | 35.0% |
!! | AATCCACATGTTTTAAGTGC+TGG | - | 51732:12451-12470 | None:intergenic | 35.0% |
!! | AGAGATGGAAGAGTTTTAGT+TGG | + | 51732:12736-12755 | MS.gene22907:CDS | 35.0% |
!! | CTGATTTGGTTTCTGTTGAA+CGG | - | 51732:12648-12667 | None:intergenic | 35.0% |
!! | GGATATAAGTTGTTTTCGCT+TGG | - | 51732:12172-12191 | None:intergenic | 35.0% |
!! | TTTTAAGGGCAGTATCGTAT+GGG | - | 51732:11769-11788 | None:intergenic | 35.0% |
!!! | ATGGTGGTTTTGAAGTTGAT+TGG | + | 51732:13024-13043 | MS.gene22907:CDS | 35.0% |
!!! | CCAATACCATTTTAGGGTAT+AGG | + | 51732:12890-12909 | MS.gene22907:CDS | 35.0% |
!!! | GAGATTTGGTTTTCGTCTAA+TGG | - | 51732:12352-12371 | None:intergenic | 35.0% |
!!! | TTTTGGAATGAATCAGAGGA+TGG | + | 51732:13005-13024 | MS.gene22907:CDS | 35.0% |
AACAGAATGAGCAGTGCAAT+CGG | - | 51732:11792-11811 | None:intergenic | 40.0% | |
AACGGTACATTAGTCCAAAC+CGG | + | 51732:11893-11912 | MS.gene22907:CDS | 40.0% | |
AGAACAGATGATCCTGAACT+AGG | - | 51732:12325-12344 | None:intergenic | 40.0% | |
AGACGAAAACCAAATCTCCA+TGG | + | 51732:12354-12373 | MS.gene22907:CDS | 40.0% | |
AGCTACAATCATGATCTGTG+GGG | + | 51732:12378-12397 | MS.gene22907:CDS | 40.0% | |
ATCGGTTGGAAATTCAACTC+CGG | - | 51732:12794-12813 | None:intergenic | 40.0% | |
ATGCCAATGGCAAGAGTAAT+GGG | + | 51732:12514-12533 | MS.gene22907:CDS | 40.0% | |
ATGCCAGCACTTAAAACATG+TGG | + | 51732:12445-12464 | MS.gene22907:CDS | 40.0% | |
CCTCATAACTATCCTAGTTC+AGG | + | 51732:12310-12329 | MS.gene22907:CDS | 40.0% | |
CCTGAACTAGGATAGTTATG+AGG | - | 51732:12313-12332 | None:intergenic | 40.0% | |
GAAGCTACAATCATGATCTG+TGG | + | 51732:12376-12395 | MS.gene22907:CDS | 40.0% | |
GAGATTTGAAGGGCCAAAAT+CGG | - | 51732:11717-11736 | None:intergenic | 40.0% | |
GATCATGATTGTAGCTTCCA+TGG | - | 51732:12374-12393 | None:intergenic | 40.0% | |
TAAGGATCGGAATGTGTTTG+TGG | - | 51732:11828-11847 | None:intergenic | 40.0% | |
TATGCCAATGGCAAGAGTAA+TGG | + | 51732:12513-12532 | MS.gene22907:CDS | 40.0% | |
TCAGGTTCTGTTCTCTCAAA+CGG | + | 51732:11875-11894 | MS.gene22907:CDS | 40.0% | |
TGGTGTAACAATGGTGAGTT+TGG | + | 51732:13044-13063 | MS.gene22907:CDS | 40.0% | |
TTGTAGCTTCCATGGAGATT+TGG | - | 51732:12366-12385 | None:intergenic | 40.0% | |
! | GACACTTGCCATTTGAAAGA+GGG | - | 51732:11739-11758 | None:intergenic | 40.0% |
! | TCCAACCGATTTAAGCTTAG+AGG | + | 51732:12804-12823 | MS.gene22907:CDS | 40.0% |
!! | AGCAGTGCAATCGGTTTTAA+GGG | - | 51732:11783-11802 | None:intergenic | 40.0% |
!! | ATTTTCGACCGAACCGATTT+TGG | + | 51732:11701-11720 | MS.gene22907:CDS | 40.0% |
!! | TAACGGATTCGAATCCTTGT+TGG | + | 51732:12479-12498 | MS.gene22907:CDS | 40.0% |
!! | TTCAAATGGCAAGTGTCGAA+TGG | + | 51732:11742-11761 | MS.gene22907:CDS | 40.0% |
!!! | CCTTTTGTTTTTGGTGCATG+CGG | + | 51732:13128-13147 | MS.gene22907:CDS | 40.0% |
!!! | CTTTTGTTTTTGGTGCATGC+GGG | + | 51732:13129-13148 | MS.gene22907:CDS | 40.0% |
!!! | GATGGAAGAGTTTTAGTTGG+TGG | + | 51732:12739-12758 | MS.gene22907:CDS | 40.0% |
!!! | GTTTTAAGGGCAGTATCGTA+TGG | - | 51732:11770-11789 | None:intergenic | 40.0% |
AGGATCATTCGAAGCTGCAA+AGG | + | 51732:12411-12430 | MS.gene22907:CDS | 45.0% | |
ATCAAACTCGGGCGACAAAT+AGG | - | 51732:12842-12861 | None:intergenic | 45.0% | |
CCGCATGCACCAAAAACAAA+AGG | - | 51732:13131-13150 | None:intergenic | 45.0% | |
GAATTTCCTGAGATTCCAGG+TGG | + | 51732:12283-12302 | MS.gene22907:CDS | 45.0% | |
GCAGATGAATGGTAGAGTCT+AGG | - | 51732:12706-12725 | None:intergenic | 45.0% | |
GCCTCTAAGCTTAAATCGGT+TGG | - | 51732:12808-12827 | None:intergenic | 45.0% | |
GCTACAATCATGATCTGTGG+GGG | + | 51732:12379-12398 | MS.gene22907:CDS | 45.0% | |
GGATCATTCGAAGCTGCAAA+GGG | + | 51732:12412-12431 | MS.gene22907:CDS | 45.0% | |
GGTGCAATCTCTTGAGTAGA+TGG | - | 51732:13096-13115 | None:intergenic | 45.0% | |
GTTTGAGAGAACAGAACCTG+AGG | - | 51732:11876-11895 | None:intergenic | 45.0% | |
TAGAGTCTAGGTCTAGAAGC+TGG | - | 51732:12694-12713 | None:intergenic | 45.0% | |
TAGTTATGAGGATCACCACC+TGG | - | 51732:12301-12320 | None:intergenic | 45.0% | |
TCAAACTCGGGCGACAAATA+GGG | - | 51732:12841-12860 | None:intergenic | 45.0% | |
TCTCCCATTACTCTTGCCAT+TGG | - | 51732:12520-12539 | None:intergenic | 45.0% | |
TGGAATGAATCAGAGGATGG+TGG | + | 51732:13008-13027 | MS.gene22907:CDS | 45.0% | |
TTCACCATCGTTGAAACCAC+CGG | - | 51732:11915-11934 | None:intergenic | 45.0% | |
TTGAAGGGCCAAAATCGGTT+CGG | - | 51732:11712-11731 | None:intergenic | 45.0% | |
TTGAGTAGATGGTCCAACCA+CGG | - | 51732:13085-13104 | None:intergenic | 45.0% | |
! | ATAATTAACGGCGCTGGATC+AGG | + | 51732:12571-12590 | MS.gene22907:CDS | 45.0% |
! | CGACACTTGCCATTTGAAAG+AGG | - | 51732:11740-11759 | None:intergenic | 45.0% |
! | CGACGGTGCCAATAACTTAA+CGG | - | 51732:12971-12990 | None:intergenic | 45.0% |
! | TTGGTGACATGCCAAATCGT+TGG | - | 51732:12874-12893 | None:intergenic | 45.0% |
!! | GAGCAGTGCAATCGGTTTTA+AGG | - | 51732:11784-11803 | None:intergenic | 45.0% |
!! | GTTGTTTTCGCTTGGATCGT+TGG | - | 51732:12164-12183 | None:intergenic | 45.0% |
ACTCAAGAGATTGCACCACC+AGG | + | 51732:13099-13118 | MS.gene22907:CDS | 50.0% | |
CAAACCGGTGGTTTCAACGA+TGG | + | 51732:11908-11927 | MS.gene22907:CDS | 50.0% | |
GCGTCAACCTGTCTTAACAC+CGG | + | 51732:12615-12634 | MS.gene22907:CDS | 50.0% | |
GGTACAGCTGGATGGGAAAA+CGG | + | 51732:12592-12611 | MS.gene22907:CDS | 50.0% | |
GGTACATTAGTCCAAACCGG+TGG | + | 51732:11896-11915 | MS.gene22907:CDS | 50.0% | |
GTACAGCTGGATGGGAAAAC+GGG | + | 51732:12593-12612 | MS.gene22907:CDS | 50.0% | |
TGGATCAGGTACAGCTGGAT+GGG | + | 51732:12585-12604 | MS.gene22907:CDS | 50.0% | |
TGTGCCTAGTTCAGGTGAGT+GGG | + | 51732:13152-13171 | MS.gene22907:CDS | 50.0% | |
TTTGTCGCCCGAGTTTGATC+TGG | + | 51732:12843-12862 | MS.gene22907:CDS | 50.0% | |
! | CATCGTTGAAACCACCGGTT+TGG | - | 51732:11910-11929 | None:intergenic | 50.0% |
!! | ACAGACACTTGGTGTTCCTC+AGG | + | 51732:11857-11876 | MS.gene22907:CDS | 50.0% |
!! | CGCTTGGATCGTTGGTTTCT+TGG | - | 51732:12156-12175 | None:intergenic | 50.0% |
AACTCGGGCGACAAATAGGG+CGG | - | 51732:12838-12857 | None:intergenic | 55.0% | |
ATCTGGTGCGGCCAACGATT+TGG | + | 51732:12860-12879 | MS.gene22907:CDS | 55.0% | |
CTGGATCAGGTACAGCTGGA+TGG | + | 51732:12584-12603 | MS.gene22907:CDS | 55.0% | |
GCAGCTTCGAATGATCCTCG+AGG | - | 51732:12409-12428 | None:intergenic | 55.0% | |
GGATCACCACCTGGAATCTC+AGG | - | 51732:12292-12311 | None:intergenic | 55.0% | |
GTGTGCCTAGTTCAGGTGAG+TGG | + | 51732:13151-13170 | MS.gene22907:CDS | 55.0% | |
TGCACCCACTCACCTGAACT+AGG | - | 51732:13159-13178 | None:intergenic | 55.0% | |
TGGCCGCACCAGATCAAACT+CGG | - | 51732:12854-12873 | None:intergenic | 55.0% | |
CATGCGGGTGTGCCTAGTTC+AGG | + | 51732:13144-13163 | MS.gene22907:CDS | 60.0% | |
CGCCCGAGTTTGATCTGGTG+CGG | + | 51732:12848-12867 | MS.gene22907:CDS | 60.0% | |
GGCCGCACCAGATCAAACTC+GGG | - | 51732:12853-12872 | None:intergenic | 60.0% | |
! | GGCGCTGGATCAGGTACAGC+TGG | + | 51732:12580-12599 | MS.gene22907:CDS | 65.0% |
!! | ATCTGTGGGGGAGCACCTCG+AGG | + | 51732:12391-12410 | MS.gene22907:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51732 | gene | 11665 | 13188 | 11665 | ID=MS.gene22907 |
51732 | mRNA | 11665 | 13188 | 11665 | ID=MS.gene22907.t1;Parent=MS.gene22907 |
51732 | exon | 11665 | 13188 | 11665 | ID=MS.gene22907.t1.exon1;Parent=MS.gene22907.t1 |
51732 | CDS | 11665 | 13188 | 11665 | ID=cds.MS.gene22907.t1;Parent=MS.gene22907.t1 |
Gene Sequence |
Protein sequence |