Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024604.t1 | XP_003626387.1 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.40E-285 | 991.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024604.t1 | Q3HRQ2 | 44.0 | 509 | 268 | 10 | 1 | 507 | 29 | 522 | 4.2e-116 | 419.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024604.t1 | G7L0T4 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.0e-285 | 991.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024604 | MS.gene82837 | PPI |
MS.gene024604 | MS.gene064736 | PPI |
MS.gene024604 | MS.gene69423 | PPI |
MS.gene024604 | MS.gene27027 | PPI |
MS.gene024604 | MS.gene63972 | PPI |
MS.gene024604 | MS.gene42280 | PPI |
MS.gene024604 | MS.gene014446 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024604.t1 | MTR_7g114530 | 97.441 | 508 | 12 | 1 | 1 | 507 | 63 | 570 | 0.0 | 1024 |
MS.gene024604.t1 | MTR_1g023570 | 59.136 | 509 | 197 | 5 | 1 | 507 | 44 | 543 | 0.0 | 611 |
MS.gene024604.t1 | MTR_3g113210 | 57.558 | 516 | 203 | 8 | 1 | 507 | 47 | 555 | 0.0 | 584 |
MS.gene024604.t1 | MTR_5g038410 | 52.963 | 540 | 215 | 9 | 1 | 506 | 1 | 535 | 0.0 | 573 |
MS.gene024604.t1 | MTR_6g004960 | 53.996 | 513 | 223 | 7 | 1 | 507 | 11 | 516 | 0.0 | 552 |
MS.gene024604.t1 | MTR_3g075520 | 44.660 | 515 | 269 | 9 | 1 | 506 | 1 | 508 | 1.31e-152 | 445 |
MS.gene024604.t1 | MTR_4g019520 | 47.358 | 511 | 243 | 11 | 1 | 506 | 42 | 531 | 1.78e-145 | 428 |
MS.gene024604.t1 | MTR_8g102900 | 44.874 | 517 | 264 | 13 | 1 | 506 | 126 | 632 | 1.14e-141 | 422 |
MS.gene024604.t1 | MTR_6g088300 | 40.494 | 526 | 282 | 11 | 1 | 506 | 70 | 584 | 9.28e-129 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024604.t1 | AT3G57620 | 63.922 | 510 | 168 | 7 | 1 | 506 | 49 | 546 | 0.0 | 674 |
MS.gene024604.t1 | AT1G14430 | 55.364 | 522 | 205 | 10 | 1 | 506 | 55 | 564 | 0.0 | 570 |
MS.gene024604.t1 | AT1G19900 | 53.333 | 510 | 227 | 7 | 1 | 506 | 45 | 547 | 0.0 | 554 |
MS.gene024604.t1 | AT1G75620 | 54.028 | 509 | 220 | 7 | 1 | 506 | 49 | 546 | 0.0 | 550 |
MS.gene024604.t1 | AT3G53950 | 43.945 | 512 | 267 | 10 | 1 | 507 | 48 | 544 | 7.47e-148 | 434 |
MS.gene024604.t1 | AT5G19580 | 43.564 | 505 | 269 | 11 | 9 | 507 | 100 | 594 | 4.68e-143 | 424 |
MS.gene024604.t1 | AT1G67290 | 44.773 | 507 | 262 | 12 | 9 | 507 | 119 | 615 | 8.45e-141 | 419 |
Find 0 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTTTGTAATCAAATAAAA+TGG | - | 51733:14274-14293 | None:intergenic | 15.0% |
!! | ATAATTATAATGCGATTATC+CGG | - | 51733:14069-14088 | None:intergenic | 20.0% |
!! | GATAATCGCATTATAATTAT+TGG | + | 51733:14069-14088 | MS.gene024604:CDS | 20.0% |
!! | GGTGATGTTATTATAATTAA+CGG | + | 51733:14585-14604 | MS.gene024604:CDS | 20.0% |
!! | GTAAAATTGTAATTTACATG+TGG | - | 51733:14798-14817 | None:intergenic | 20.0% |
!!! | CATGTAAATTACAATTTTAC+CGG | + | 51733:14798-14817 | MS.gene024604:CDS | 20.0% |
! | AAAAACAAAAGGTAATAACC+TGG | - | 51733:15146-15165 | None:intergenic | 25.0% |
! | AAAATGAAAAGGTTTCCATT+AGG | - | 51733:14237-14256 | None:intergenic | 25.0% |
! | AAAGAATGTGTAGTAAATGA+CGG | - | 51733:15014-15033 | None:intergenic | 25.0% |
! | AATCGCATTATAATTATTGG+TGG | + | 51733:14072-14091 | MS.gene024604:CDS | 25.0% |
! | ATATTCTCAATAATCCAACA+AGG | - | 51733:14522-14541 | None:intergenic | 25.0% |
! | ATTATAATAACATCACCGTT+AGG | - | 51733:14582-14601 | None:intergenic | 25.0% |
! | GTTTCAATGAAAATTGTGAT+TGG | + | 51733:13986-14005 | MS.gene024604:CDS | 25.0% |
!! | GAAGAAGAAGTTATTGTTTT+AGG | - | 51733:14126-14145 | None:intergenic | 25.0% |
!! | TCACAATTTTCATTGAAACA+TGG | - | 51733:13985-14004 | None:intergenic | 25.0% |
!! | TCATTTACTACACATTCTTT+TGG | + | 51733:15014-15033 | MS.gene024604:CDS | 25.0% |
!!! | AGGTTATTACCTTTTGTTTT+TGG | + | 51733:15145-15164 | MS.gene024604:CDS | 25.0% |
!!! | GTTTTATTACGTGACATTTA+CGG | + | 51733:14941-14960 | MS.gene024604:CDS | 25.0% |
AAATGCCTCTAAGCTTAAAT+CGG | - | 51733:14838-14857 | None:intergenic | 30.0% | |
ACTAAACCGTTTATCTGATT+TGG | - | 51733:14688-14707 | None:intergenic | 30.0% | |
ATGTGGATTTCTCAAAGTAA+CGG | + | 51733:14488-14507 | MS.gene024604:CDS | 30.0% | |
CAGAAACCAAATCAGATAAA+CGG | + | 51733:14679-14698 | MS.gene024604:CDS | 30.0% | |
GACATGTTAATTCTACCTAA+CGG | + | 51733:14564-14583 | MS.gene024604:CDS | 30.0% | |
GATTATTGAGAATATGCCAA+TGG | + | 51733:14527-14546 | MS.gene024604:CDS | 30.0% | |
TGAAGTTTCCGTTAAGTTAT+TGG | + | 51733:14986-15005 | MS.gene024604:CDS | 30.0% | |
TGCAACAAATCAAATACTAC+CGG | + | 51733:14047-14066 | MS.gene024604:CDS | 30.0% | |
TTAACACAATTGCAGATGAA+TGG | - | 51733:14743-14762 | None:intergenic | 30.0% | |
TTCTTTCGGATAAGTAACTT+GGG | - | 51733:14020-14039 | None:intergenic | 30.0% | |
! | ATGTCACCAATACCATTTTA+GGG | + | 51733:14910-14929 | MS.gene024604:CDS | 30.0% |
!!! | ATTCTTTTGGAATGAATCAG+AGG | + | 51733:15027-15046 | MS.gene024604:CDS | 30.0% |
!!! | CAATACCATTTTAGGGTATA+GGG | + | 51733:14917-14936 | MS.gene024604:CDS | 30.0% |
AAACACCCTATACCCTAAAA+TGG | - | 51733:14925-14944 | None:intergenic | 35.0% | |
AAAGAATTTCCTGAGATTCC+AGG | + | 51733:14306-14325 | MS.gene024604:CDS | 35.0% | |
AACAAAAGGTAATAACCTGG+TGG | - | 51733:15143-15162 | None:intergenic | 35.0% | |
AAGCTACAATCATGATCTGT+GGG | + | 51733:14403-14422 | MS.gene024604:CDS | 35.0% | |
AGTGTCTGTTTGTACAGTTA+AGG | - | 51733:13872-13891 | None:intergenic | 35.0% | |
ATTTATTATGCTACCGTGGT+TGG | + | 51733:15095-15114 | MS.gene024604:CDS | 35.0% | |
CCTATACCCTAAAATGGTAT+TGG | - | 51733:14919-14938 | None:intergenic | 35.0% | |
CTGTTTGTACAGTTAAGGAT+CGG | - | 51733:13867-13886 | None:intergenic | 35.0% | |
CTTCTTTCGGATAAGTAACT+TGG | - | 51733:14021-14040 | None:intergenic | 35.0% | |
GGATATTTATTATGCTACCG+TGG | + | 51733:15091-15110 | MS.gene024604:CDS | 35.0% | |
GTGTGTTTGCGAAAATGAAA+AGG | - | 51733:14248-14267 | None:intergenic | 35.0% | |
GTTACTTATCCGAAAGAAGA+TGG | + | 51733:14022-14041 | MS.gene024604:CDS | 35.0% | |
GTTATTATAATTAACGGCGC+TGG | + | 51733:14591-14610 | MS.gene024604:CDS | 35.0% | |
TAACTGTACAAACAGACACT+TGG | + | 51733:13872-13891 | MS.gene024604:CDS | 35.0% | |
TCAAATCTCCCTCTTTCAAA+TGG | + | 51733:13754-13773 | MS.gene024604:CDS | 35.0% | |
TCTGCAATTGTGTTAAGAGA+TGG | + | 51733:14747-14766 | MS.gene024604:CDS | 35.0% | |
TCTGTTGAACGGAAAATTAC+CGG | - | 51733:14663-14682 | None:intergenic | 35.0% | |
TGTTGCATACCATCTTCTTT+CGG | - | 51733:14034-14053 | None:intergenic | 35.0% | |
TTAGGTAGAAGATGAACGAA+TGG | - | 51733:14219-14238 | None:intergenic | 35.0% | |
TTCGTTCATCTTCTACCTAA+TGG | + | 51733:14219-14238 | MS.gene024604:CDS | 35.0% | |
TTGAAAGAGGGAGATTTGAA+GGG | - | 51733:13753-13772 | None:intergenic | 35.0% | |
TTTGAAAGAGGGAGATTTGA+AGG | - | 51733:13754-13773 | None:intergenic | 35.0% | |
! | AAAATTACCGGTGTTAAGAC+AGG | - | 51733:14651-14670 | None:intergenic | 35.0% |
! | CATGTCACCAATACCATTTT+AGG | + | 51733:14909-14928 | MS.gene024604:CDS | 35.0% |
! | GAAGTTGATTGGTGTAACAA+TGG | + | 51733:15061-15080 | MS.gene024604:CDS | 35.0% |
! | TACGGTAGCTAATTTTGCTT+CGG | + | 51733:14959-14978 | MS.gene024604:CDS | 35.0% |
!! | AATCCACATGTTTTAAGTGC+TGG | - | 51733:14477-14496 | None:intergenic | 35.0% |
!! | AGAGATGGAAGAGTTTTAGT+TGG | + | 51733:14762-14781 | MS.gene024604:CDS | 35.0% |
!! | CTGATTTGGTTTCTGTTGAA+CGG | - | 51733:14674-14693 | None:intergenic | 35.0% |
!! | GGATATAAGTTGTTTTCGCT+TGG | - | 51733:14198-14217 | None:intergenic | 35.0% |
!! | TTTTAAGGGCAGTATCGTAT+GGG | - | 51733:13795-13814 | None:intergenic | 35.0% |
!!! | ATGGTGGTTTTGAAGTTGAT+TGG | + | 51733:15050-15069 | MS.gene024604:CDS | 35.0% |
!!! | CCAATACCATTTTAGGGTAT+AGG | + | 51733:14916-14935 | MS.gene024604:CDS | 35.0% |
!!! | GAGATTTGGTTTTCGTCTAA+TGG | - | 51733:14378-14397 | None:intergenic | 35.0% |
!!! | TTTTGGAATGAATCAGAGGA+TGG | + | 51733:15031-15050 | MS.gene024604:CDS | 35.0% |
AACAGAATGAGCAGTGCAAT+CGG | - | 51733:13818-13837 | None:intergenic | 40.0% | |
AACGGTACATTAGTCCAAAC+CGG | + | 51733:13919-13938 | MS.gene024604:CDS | 40.0% | |
AGAACAGATGATCCTGAACT+AGG | - | 51733:14351-14370 | None:intergenic | 40.0% | |
AGACGAAAACCAAATCTCCA+TGG | + | 51733:14380-14399 | MS.gene024604:CDS | 40.0% | |
AGCTACAATCATGATCTGTG+GGG | + | 51733:14404-14423 | MS.gene024604:CDS | 40.0% | |
ATCGGTTGGAAATTCAACTC+CGG | - | 51733:14820-14839 | None:intergenic | 40.0% | |
ATGCCAATGGCAAGAGTAAT+GGG | + | 51733:14540-14559 | MS.gene024604:CDS | 40.0% | |
ATGCCAGCACTTAAAACATG+TGG | + | 51733:14471-14490 | MS.gene024604:CDS | 40.0% | |
CCTCATAACTATCCTAGTTC+AGG | + | 51733:14336-14355 | MS.gene024604:CDS | 40.0% | |
CCTGAACTAGGATAGTTATG+AGG | - | 51733:14339-14358 | None:intergenic | 40.0% | |
GAAGCTACAATCATGATCTG+TGG | + | 51733:14402-14421 | MS.gene024604:CDS | 40.0% | |
GAGATTTGAAGGGCCAAAAT+CGG | - | 51733:13743-13762 | None:intergenic | 40.0% | |
GATCATGATTGTAGCTTCCA+TGG | - | 51733:14400-14419 | None:intergenic | 40.0% | |
TAAGGATCGGAATGTGTTTG+TGG | - | 51733:13854-13873 | None:intergenic | 40.0% | |
TATGCCAATGGCAAGAGTAA+TGG | + | 51733:14539-14558 | MS.gene024604:CDS | 40.0% | |
TCAGGTTCTGTTCTCTCAAA+CGG | + | 51733:13901-13920 | MS.gene024604:CDS | 40.0% | |
TGGTGTAACAATGGTGAGTT+TGG | + | 51733:15070-15089 | MS.gene024604:CDS | 40.0% | |
TTGTAGCTTCCATGGAGATT+TGG | - | 51733:14392-14411 | None:intergenic | 40.0% | |
! | GACACTTGCCATTTGAAAGA+GGG | - | 51733:13765-13784 | None:intergenic | 40.0% |
! | TCCAACCGATTTAAGCTTAG+AGG | + | 51733:14830-14849 | MS.gene024604:CDS | 40.0% |
! | TGACGGTGCCAATAACTTAA+CGG | - | 51733:14997-15016 | None:intergenic | 40.0% |
!! | AGCAGTGCAATCGGTTTTAA+GGG | - | 51733:13809-13828 | None:intergenic | 40.0% |
!! | ATTTTCGACCGAACCGATTT+TGG | + | 51733:13727-13746 | MS.gene024604:CDS | 40.0% |
!! | TAACGGATTCGAATCCTTGT+TGG | + | 51733:14505-14524 | MS.gene024604:CDS | 40.0% |
!! | TTCAAATGGCAAGTGTCGAA+TGG | + | 51733:13768-13787 | MS.gene024604:CDS | 40.0% |
!!! | CCTTTTGTTTTTGGTGCATG+CGG | + | 51733:15154-15173 | MS.gene024604:CDS | 40.0% |
!!! | CTTTTGTTTTTGGTGCATGC+GGG | + | 51733:15155-15174 | MS.gene024604:CDS | 40.0% |
!!! | GATGGAAGAGTTTTAGTTGG+TGG | + | 51733:14765-14784 | MS.gene024604:CDS | 40.0% |
!!! | GTTTTAAGGGCAGTATCGTA+TGG | - | 51733:13796-13815 | None:intergenic | 40.0% |
AGGATCATTCGAAGCTGCAA+AGG | + | 51733:14437-14456 | MS.gene024604:CDS | 45.0% | |
ATCAAACTCGGGCGACAAAT+AGG | - | 51733:14868-14887 | None:intergenic | 45.0% | |
CCGCATGCACCAAAAACAAA+AGG | - | 51733:15157-15176 | None:intergenic | 45.0% | |
GAATTTCCTGAGATTCCAGG+TGG | + | 51733:14309-14328 | MS.gene024604:CDS | 45.0% | |
GCAGATGAATGGTAGAGTCT+AGG | - | 51733:14732-14751 | None:intergenic | 45.0% | |
GCCTCTAAGCTTAAATCGGT+TGG | - | 51733:14834-14853 | None:intergenic | 45.0% | |
GCTACAATCATGATCTGTGG+GGG | + | 51733:14405-14424 | MS.gene024604:CDS | 45.0% | |
GGATCATTCGAAGCTGCAAA+GGG | + | 51733:14438-14457 | MS.gene024604:CDS | 45.0% | |
GGTGCAATCTCTTGAGTAGA+TGG | - | 51733:15122-15141 | None:intergenic | 45.0% | |
GTTTGAGAGAACAGAACCTG+AGG | - | 51733:13902-13921 | None:intergenic | 45.0% | |
TAGAGTCTAGGTCTAGAAGC+TGG | - | 51733:14720-14739 | None:intergenic | 45.0% | |
TAGTTATGAGGATCACCACC+TGG | - | 51733:14327-14346 | None:intergenic | 45.0% | |
TCAAACTCGGGCGACAAATA+GGG | - | 51733:14867-14886 | None:intergenic | 45.0% | |
TCTCCCATTACTCTTGCCAT+TGG | - | 51733:14546-14565 | None:intergenic | 45.0% | |
TGGAATGAATCAGAGGATGG+TGG | + | 51733:15034-15053 | MS.gene024604:CDS | 45.0% | |
TTCACCATCGTTGAAACCAC+CGG | - | 51733:13941-13960 | None:intergenic | 45.0% | |
TTGAAGGGCCAAAATCGGTT+CGG | - | 51733:13738-13757 | None:intergenic | 45.0% | |
TTGAGTAGATGGTCCAACCA+CGG | - | 51733:15111-15130 | None:intergenic | 45.0% | |
! | ATAATTAACGGCGCTGGATC+AGG | + | 51733:14597-14616 | MS.gene024604:CDS | 45.0% |
! | CGACACTTGCCATTTGAAAG+AGG | - | 51733:13766-13785 | None:intergenic | 45.0% |
! | TTGGTGACATGCCAAATCGT+TGG | - | 51733:14900-14919 | None:intergenic | 45.0% |
!! | GAGCAGTGCAATCGGTTTTA+AGG | - | 51733:13810-13829 | None:intergenic | 45.0% |
!! | GTTGTTTTCGCTTGGATCGT+TGG | - | 51733:14190-14209 | None:intergenic | 45.0% |
ACTCAAGAGATTGCACCACC+AGG | + | 51733:15125-15144 | MS.gene024604:CDS | 50.0% | |
CAAACCGGTGGTTTCAACGA+TGG | + | 51733:13934-13953 | MS.gene024604:CDS | 50.0% | |
GCGTCAACCTGTCTTAACAC+CGG | + | 51733:14641-14660 | MS.gene024604:CDS | 50.0% | |
GGTACAGCTGGATGGGAAAA+CGG | + | 51733:14618-14637 | MS.gene024604:CDS | 50.0% | |
GGTACATTAGTCCAAACCGG+TGG | + | 51733:13922-13941 | MS.gene024604:CDS | 50.0% | |
GTACAGCTGGATGGGAAAAC+GGG | + | 51733:14619-14638 | MS.gene024604:CDS | 50.0% | |
TGGATCAGGTACAGCTGGAT+GGG | + | 51733:14611-14630 | MS.gene024604:CDS | 50.0% | |
TGTGCCTAGTTCAGGTGAGT+GGG | + | 51733:15178-15197 | MS.gene024604:CDS | 50.0% | |
TTTGTCGCCCGAGTTTGATC+TGG | + | 51733:14869-14888 | MS.gene024604:CDS | 50.0% | |
! | CATCGTTGAAACCACCGGTT+TGG | - | 51733:13936-13955 | None:intergenic | 50.0% |
!! | ACAGACACTTGGTGTTCCTC+AGG | + | 51733:13883-13902 | MS.gene024604:CDS | 50.0% |
!! | CGCTTGGATCGTTGGTTTCT+TGG | - | 51733:14182-14201 | None:intergenic | 50.0% |
AACTCGGGCGACAAATAGGG+CGG | - | 51733:14864-14883 | None:intergenic | 55.0% | |
ATCTGGTGCGGCCAACGATT+TGG | + | 51733:14886-14905 | MS.gene024604:CDS | 55.0% | |
CTGGATCAGGTACAGCTGGA+TGG | + | 51733:14610-14629 | MS.gene024604:CDS | 55.0% | |
GCAGCTTCGAATGATCCTCG+AGG | - | 51733:14435-14454 | None:intergenic | 55.0% | |
GGATCACCACCTGGAATCTC+AGG | - | 51733:14318-14337 | None:intergenic | 55.0% | |
GTGTGCCTAGTTCAGGTGAG+TGG | + | 51733:15177-15196 | MS.gene024604:CDS | 55.0% | |
TGCACCCACTCACCTGAACT+AGG | - | 51733:15185-15204 | None:intergenic | 55.0% | |
TGGCCGCACCAGATCAAACT+CGG | - | 51733:14880-14899 | None:intergenic | 55.0% | |
CATGCGGGTGTGCCTAGTTC+AGG | + | 51733:15170-15189 | MS.gene024604:CDS | 60.0% | |
CGCCCGAGTTTGATCTGGTG+CGG | + | 51733:14874-14893 | MS.gene024604:CDS | 60.0% | |
GGCCGCACCAGATCAAACTC+GGG | - | 51733:14879-14898 | None:intergenic | 60.0% | |
! | GGCGCTGGATCAGGTACAGC+TGG | + | 51733:14606-14625 | MS.gene024604:CDS | 65.0% |
!! | ATCTGTGGGGGAGCACCTCG+AGG | + | 51733:14417-14436 | MS.gene024604:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51733 | gene | 13691 | 15214 | 13691 | ID=MS.gene024604 |
51733 | mRNA | 13691 | 15214 | 13691 | ID=MS.gene024604.t1;Parent=MS.gene024604 |
51733 | exon | 13691 | 15214 | 13691 | ID=MS.gene024604.t1.exon1;Parent=MS.gene024604.t1 |
51733 | CDS | 13691 | 15214 | 13691 | ID=cds.MS.gene024604.t1;Parent=MS.gene024604.t1 |
Gene Sequence |
Protein sequence |