AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024604


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024604.t1 MTR_7g114530 97.441 508 12 1 1 507 63 570 0.0 1024
MS.gene024604.t1 MTR_1g023570 59.136 509 197 5 1 507 44 543 0.0 611
MS.gene024604.t1 MTR_3g113210 57.558 516 203 8 1 507 47 555 0.0 584
MS.gene024604.t1 MTR_5g038410 52.963 540 215 9 1 506 1 535 0.0 573
MS.gene024604.t1 MTR_6g004960 53.996 513 223 7 1 507 11 516 0.0 552
MS.gene024604.t1 MTR_3g075520 44.660 515 269 9 1 506 1 508 1.31e-152 445
MS.gene024604.t1 MTR_4g019520 47.358 511 243 11 1 506 42 531 1.78e-145 428
MS.gene024604.t1 MTR_8g102900 44.874 517 264 13 1 506 126 632 1.14e-141 422
MS.gene024604.t1 MTR_6g088300 40.494 526 282 11 1 506 70 584 9.28e-129 387
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024604.t1 AT3G57620 63.922 510 168 7 1 506 49 546 0.0 674
MS.gene024604.t1 AT1G14430 55.364 522 205 10 1 506 55 564 0.0 570
MS.gene024604.t1 AT1G19900 53.333 510 227 7 1 506 45 547 0.0 554
MS.gene024604.t1 AT1G75620 54.028 509 220 7 1 506 49 546 0.0 550
MS.gene024604.t1 AT3G53950 43.945 512 267 10 1 507 48 544 7.47e-148 434
MS.gene024604.t1 AT5G19580 43.564 505 269 11 9 507 100 594 4.68e-143 424
MS.gene024604.t1 AT1G67290 44.773 507 262 12 9 507 119 615 8.45e-141 419

Find 0 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTGTAATCAAATAAAA+TGG - 51733:14274-14293 None:intergenic 15.0%
!! ATAATTATAATGCGATTATC+CGG - 51733:14069-14088 None:intergenic 20.0%
!! GATAATCGCATTATAATTAT+TGG + 51733:14069-14088 MS.gene024604:CDS 20.0%
!! GGTGATGTTATTATAATTAA+CGG + 51733:14585-14604 MS.gene024604:CDS 20.0%
!! GTAAAATTGTAATTTACATG+TGG - 51733:14798-14817 None:intergenic 20.0%
!!! CATGTAAATTACAATTTTAC+CGG + 51733:14798-14817 MS.gene024604:CDS 20.0%
! AAAAACAAAAGGTAATAACC+TGG - 51733:15146-15165 None:intergenic 25.0%
! AAAATGAAAAGGTTTCCATT+AGG - 51733:14237-14256 None:intergenic 25.0%
! AAAGAATGTGTAGTAAATGA+CGG - 51733:15014-15033 None:intergenic 25.0%
! AATCGCATTATAATTATTGG+TGG + 51733:14072-14091 MS.gene024604:CDS 25.0%
! ATATTCTCAATAATCCAACA+AGG - 51733:14522-14541 None:intergenic 25.0%
! ATTATAATAACATCACCGTT+AGG - 51733:14582-14601 None:intergenic 25.0%
! GTTTCAATGAAAATTGTGAT+TGG + 51733:13986-14005 MS.gene024604:CDS 25.0%
!! GAAGAAGAAGTTATTGTTTT+AGG - 51733:14126-14145 None:intergenic 25.0%
!! TCACAATTTTCATTGAAACA+TGG - 51733:13985-14004 None:intergenic 25.0%
!! TCATTTACTACACATTCTTT+TGG + 51733:15014-15033 MS.gene024604:CDS 25.0%
!!! AGGTTATTACCTTTTGTTTT+TGG + 51733:15145-15164 MS.gene024604:CDS 25.0%
!!! GTTTTATTACGTGACATTTA+CGG + 51733:14941-14960 MS.gene024604:CDS 25.0%
AAATGCCTCTAAGCTTAAAT+CGG - 51733:14838-14857 None:intergenic 30.0%
ACTAAACCGTTTATCTGATT+TGG - 51733:14688-14707 None:intergenic 30.0%
ATGTGGATTTCTCAAAGTAA+CGG + 51733:14488-14507 MS.gene024604:CDS 30.0%
CAGAAACCAAATCAGATAAA+CGG + 51733:14679-14698 MS.gene024604:CDS 30.0%
GACATGTTAATTCTACCTAA+CGG + 51733:14564-14583 MS.gene024604:CDS 30.0%
GATTATTGAGAATATGCCAA+TGG + 51733:14527-14546 MS.gene024604:CDS 30.0%
TGAAGTTTCCGTTAAGTTAT+TGG + 51733:14986-15005 MS.gene024604:CDS 30.0%
TGCAACAAATCAAATACTAC+CGG + 51733:14047-14066 MS.gene024604:CDS 30.0%
TTAACACAATTGCAGATGAA+TGG - 51733:14743-14762 None:intergenic 30.0%
TTCTTTCGGATAAGTAACTT+GGG - 51733:14020-14039 None:intergenic 30.0%
! ATGTCACCAATACCATTTTA+GGG + 51733:14910-14929 MS.gene024604:CDS 30.0%
!!! ATTCTTTTGGAATGAATCAG+AGG + 51733:15027-15046 MS.gene024604:CDS 30.0%
!!! CAATACCATTTTAGGGTATA+GGG + 51733:14917-14936 MS.gene024604:CDS 30.0%
AAACACCCTATACCCTAAAA+TGG - 51733:14925-14944 None:intergenic 35.0%
AAAGAATTTCCTGAGATTCC+AGG + 51733:14306-14325 MS.gene024604:CDS 35.0%
AACAAAAGGTAATAACCTGG+TGG - 51733:15143-15162 None:intergenic 35.0%
AAGCTACAATCATGATCTGT+GGG + 51733:14403-14422 MS.gene024604:CDS 35.0%
AGTGTCTGTTTGTACAGTTA+AGG - 51733:13872-13891 None:intergenic 35.0%
ATTTATTATGCTACCGTGGT+TGG + 51733:15095-15114 MS.gene024604:CDS 35.0%
CCTATACCCTAAAATGGTAT+TGG - 51733:14919-14938 None:intergenic 35.0%
CTGTTTGTACAGTTAAGGAT+CGG - 51733:13867-13886 None:intergenic 35.0%
CTTCTTTCGGATAAGTAACT+TGG - 51733:14021-14040 None:intergenic 35.0%
GGATATTTATTATGCTACCG+TGG + 51733:15091-15110 MS.gene024604:CDS 35.0%
GTGTGTTTGCGAAAATGAAA+AGG - 51733:14248-14267 None:intergenic 35.0%
GTTACTTATCCGAAAGAAGA+TGG + 51733:14022-14041 MS.gene024604:CDS 35.0%
GTTATTATAATTAACGGCGC+TGG + 51733:14591-14610 MS.gene024604:CDS 35.0%
TAACTGTACAAACAGACACT+TGG + 51733:13872-13891 MS.gene024604:CDS 35.0%
TCAAATCTCCCTCTTTCAAA+TGG + 51733:13754-13773 MS.gene024604:CDS 35.0%
TCTGCAATTGTGTTAAGAGA+TGG + 51733:14747-14766 MS.gene024604:CDS 35.0%
TCTGTTGAACGGAAAATTAC+CGG - 51733:14663-14682 None:intergenic 35.0%
TGTTGCATACCATCTTCTTT+CGG - 51733:14034-14053 None:intergenic 35.0%
TTAGGTAGAAGATGAACGAA+TGG - 51733:14219-14238 None:intergenic 35.0%
TTCGTTCATCTTCTACCTAA+TGG + 51733:14219-14238 MS.gene024604:CDS 35.0%
TTGAAAGAGGGAGATTTGAA+GGG - 51733:13753-13772 None:intergenic 35.0%
TTTGAAAGAGGGAGATTTGA+AGG - 51733:13754-13773 None:intergenic 35.0%
! AAAATTACCGGTGTTAAGAC+AGG - 51733:14651-14670 None:intergenic 35.0%
! CATGTCACCAATACCATTTT+AGG + 51733:14909-14928 MS.gene024604:CDS 35.0%
! GAAGTTGATTGGTGTAACAA+TGG + 51733:15061-15080 MS.gene024604:CDS 35.0%
! TACGGTAGCTAATTTTGCTT+CGG + 51733:14959-14978 MS.gene024604:CDS 35.0%
!! AATCCACATGTTTTAAGTGC+TGG - 51733:14477-14496 None:intergenic 35.0%
!! AGAGATGGAAGAGTTTTAGT+TGG + 51733:14762-14781 MS.gene024604:CDS 35.0%
!! CTGATTTGGTTTCTGTTGAA+CGG - 51733:14674-14693 None:intergenic 35.0%
!! GGATATAAGTTGTTTTCGCT+TGG - 51733:14198-14217 None:intergenic 35.0%
!! TTTTAAGGGCAGTATCGTAT+GGG - 51733:13795-13814 None:intergenic 35.0%
!!! ATGGTGGTTTTGAAGTTGAT+TGG + 51733:15050-15069 MS.gene024604:CDS 35.0%
!!! CCAATACCATTTTAGGGTAT+AGG + 51733:14916-14935 MS.gene024604:CDS 35.0%
!!! GAGATTTGGTTTTCGTCTAA+TGG - 51733:14378-14397 None:intergenic 35.0%
!!! TTTTGGAATGAATCAGAGGA+TGG + 51733:15031-15050 MS.gene024604:CDS 35.0%
AACAGAATGAGCAGTGCAAT+CGG - 51733:13818-13837 None:intergenic 40.0%
AACGGTACATTAGTCCAAAC+CGG + 51733:13919-13938 MS.gene024604:CDS 40.0%
AGAACAGATGATCCTGAACT+AGG - 51733:14351-14370 None:intergenic 40.0%
AGACGAAAACCAAATCTCCA+TGG + 51733:14380-14399 MS.gene024604:CDS 40.0%
AGCTACAATCATGATCTGTG+GGG + 51733:14404-14423 MS.gene024604:CDS 40.0%
ATCGGTTGGAAATTCAACTC+CGG - 51733:14820-14839 None:intergenic 40.0%
ATGCCAATGGCAAGAGTAAT+GGG + 51733:14540-14559 MS.gene024604:CDS 40.0%
ATGCCAGCACTTAAAACATG+TGG + 51733:14471-14490 MS.gene024604:CDS 40.0%
CCTCATAACTATCCTAGTTC+AGG + 51733:14336-14355 MS.gene024604:CDS 40.0%
CCTGAACTAGGATAGTTATG+AGG - 51733:14339-14358 None:intergenic 40.0%
GAAGCTACAATCATGATCTG+TGG + 51733:14402-14421 MS.gene024604:CDS 40.0%
GAGATTTGAAGGGCCAAAAT+CGG - 51733:13743-13762 None:intergenic 40.0%
GATCATGATTGTAGCTTCCA+TGG - 51733:14400-14419 None:intergenic 40.0%
TAAGGATCGGAATGTGTTTG+TGG - 51733:13854-13873 None:intergenic 40.0%
TATGCCAATGGCAAGAGTAA+TGG + 51733:14539-14558 MS.gene024604:CDS 40.0%
TCAGGTTCTGTTCTCTCAAA+CGG + 51733:13901-13920 MS.gene024604:CDS 40.0%
TGGTGTAACAATGGTGAGTT+TGG + 51733:15070-15089 MS.gene024604:CDS 40.0%
TTGTAGCTTCCATGGAGATT+TGG - 51733:14392-14411 None:intergenic 40.0%
! GACACTTGCCATTTGAAAGA+GGG - 51733:13765-13784 None:intergenic 40.0%
! TCCAACCGATTTAAGCTTAG+AGG + 51733:14830-14849 MS.gene024604:CDS 40.0%
! TGACGGTGCCAATAACTTAA+CGG - 51733:14997-15016 None:intergenic 40.0%
!! AGCAGTGCAATCGGTTTTAA+GGG - 51733:13809-13828 None:intergenic 40.0%
!! ATTTTCGACCGAACCGATTT+TGG + 51733:13727-13746 MS.gene024604:CDS 40.0%
!! TAACGGATTCGAATCCTTGT+TGG + 51733:14505-14524 MS.gene024604:CDS 40.0%
!! TTCAAATGGCAAGTGTCGAA+TGG + 51733:13768-13787 MS.gene024604:CDS 40.0%
!!! CCTTTTGTTTTTGGTGCATG+CGG + 51733:15154-15173 MS.gene024604:CDS 40.0%
!!! CTTTTGTTTTTGGTGCATGC+GGG + 51733:15155-15174 MS.gene024604:CDS 40.0%
!!! GATGGAAGAGTTTTAGTTGG+TGG + 51733:14765-14784 MS.gene024604:CDS 40.0%
!!! GTTTTAAGGGCAGTATCGTA+TGG - 51733:13796-13815 None:intergenic 40.0%
AGGATCATTCGAAGCTGCAA+AGG + 51733:14437-14456 MS.gene024604:CDS 45.0%
ATCAAACTCGGGCGACAAAT+AGG - 51733:14868-14887 None:intergenic 45.0%
CCGCATGCACCAAAAACAAA+AGG - 51733:15157-15176 None:intergenic 45.0%
GAATTTCCTGAGATTCCAGG+TGG + 51733:14309-14328 MS.gene024604:CDS 45.0%
GCAGATGAATGGTAGAGTCT+AGG - 51733:14732-14751 None:intergenic 45.0%
GCCTCTAAGCTTAAATCGGT+TGG - 51733:14834-14853 None:intergenic 45.0%
GCTACAATCATGATCTGTGG+GGG + 51733:14405-14424 MS.gene024604:CDS 45.0%
GGATCATTCGAAGCTGCAAA+GGG + 51733:14438-14457 MS.gene024604:CDS 45.0%
GGTGCAATCTCTTGAGTAGA+TGG - 51733:15122-15141 None:intergenic 45.0%
GTTTGAGAGAACAGAACCTG+AGG - 51733:13902-13921 None:intergenic 45.0%
TAGAGTCTAGGTCTAGAAGC+TGG - 51733:14720-14739 None:intergenic 45.0%
TAGTTATGAGGATCACCACC+TGG - 51733:14327-14346 None:intergenic 45.0%
TCAAACTCGGGCGACAAATA+GGG - 51733:14867-14886 None:intergenic 45.0%
TCTCCCATTACTCTTGCCAT+TGG - 51733:14546-14565 None:intergenic 45.0%
TGGAATGAATCAGAGGATGG+TGG + 51733:15034-15053 MS.gene024604:CDS 45.0%
TTCACCATCGTTGAAACCAC+CGG - 51733:13941-13960 None:intergenic 45.0%
TTGAAGGGCCAAAATCGGTT+CGG - 51733:13738-13757 None:intergenic 45.0%
TTGAGTAGATGGTCCAACCA+CGG - 51733:15111-15130 None:intergenic 45.0%
! ATAATTAACGGCGCTGGATC+AGG + 51733:14597-14616 MS.gene024604:CDS 45.0%
! CGACACTTGCCATTTGAAAG+AGG - 51733:13766-13785 None:intergenic 45.0%
! TTGGTGACATGCCAAATCGT+TGG - 51733:14900-14919 None:intergenic 45.0%
!! GAGCAGTGCAATCGGTTTTA+AGG - 51733:13810-13829 None:intergenic 45.0%
!! GTTGTTTTCGCTTGGATCGT+TGG - 51733:14190-14209 None:intergenic 45.0%
ACTCAAGAGATTGCACCACC+AGG + 51733:15125-15144 MS.gene024604:CDS 50.0%
CAAACCGGTGGTTTCAACGA+TGG + 51733:13934-13953 MS.gene024604:CDS 50.0%
GCGTCAACCTGTCTTAACAC+CGG + 51733:14641-14660 MS.gene024604:CDS 50.0%
GGTACAGCTGGATGGGAAAA+CGG + 51733:14618-14637 MS.gene024604:CDS 50.0%
GGTACATTAGTCCAAACCGG+TGG + 51733:13922-13941 MS.gene024604:CDS 50.0%
GTACAGCTGGATGGGAAAAC+GGG + 51733:14619-14638 MS.gene024604:CDS 50.0%
TGGATCAGGTACAGCTGGAT+GGG + 51733:14611-14630 MS.gene024604:CDS 50.0%
TGTGCCTAGTTCAGGTGAGT+GGG + 51733:15178-15197 MS.gene024604:CDS 50.0%
TTTGTCGCCCGAGTTTGATC+TGG + 51733:14869-14888 MS.gene024604:CDS 50.0%
! CATCGTTGAAACCACCGGTT+TGG - 51733:13936-13955 None:intergenic 50.0%
!! ACAGACACTTGGTGTTCCTC+AGG + 51733:13883-13902 MS.gene024604:CDS 50.0%
!! CGCTTGGATCGTTGGTTTCT+TGG - 51733:14182-14201 None:intergenic 50.0%
AACTCGGGCGACAAATAGGG+CGG - 51733:14864-14883 None:intergenic 55.0%
ATCTGGTGCGGCCAACGATT+TGG + 51733:14886-14905 MS.gene024604:CDS 55.0%
CTGGATCAGGTACAGCTGGA+TGG + 51733:14610-14629 MS.gene024604:CDS 55.0%
GCAGCTTCGAATGATCCTCG+AGG - 51733:14435-14454 None:intergenic 55.0%
GGATCACCACCTGGAATCTC+AGG - 51733:14318-14337 None:intergenic 55.0%
GTGTGCCTAGTTCAGGTGAG+TGG + 51733:15177-15196 MS.gene024604:CDS 55.0%
TGCACCCACTCACCTGAACT+AGG - 51733:15185-15204 None:intergenic 55.0%
TGGCCGCACCAGATCAAACT+CGG - 51733:14880-14899 None:intergenic 55.0%
CATGCGGGTGTGCCTAGTTC+AGG + 51733:15170-15189 MS.gene024604:CDS 60.0%
CGCCCGAGTTTGATCTGGTG+CGG + 51733:14874-14893 MS.gene024604:CDS 60.0%
GGCCGCACCAGATCAAACTC+GGG - 51733:14879-14898 None:intergenic 60.0%
! GGCGCTGGATCAGGTACAGC+TGG + 51733:14606-14625 MS.gene024604:CDS 65.0%
!! ATCTGTGGGGGAGCACCTCG+AGG + 51733:14417-14436 MS.gene024604:CDS 65.0%


Chromosome Type Strat End Strand Name
51733 gene 13691 15214 13691 ID=MS.gene024604
51733 mRNA 13691 15214 13691 ID=MS.gene024604.t1;Parent=MS.gene024604
51733 exon 13691 15214 13691 ID=MS.gene024604.t1.exon1;Parent=MS.gene024604.t1
51733 CDS 13691 15214 13691 ID=cds.MS.gene024604.t1;Parent=MS.gene024604.t1
Gene Sequence

>MS.gene024604

ATGCACATGCAACTTTCACACAACAACAAAATCATAATTTTCGACCGAACCGATTTTGGCCCTTCAAATCTCCCTCTTTCAAATGGCAAGTGTCGAATGGACCCATACGATACTGCCCTTAAAACCGATTGCACTGCTCATTCTGTTCTATACGACATTGCCACAAACACATTCCGATCCTTAACTGTACAAACAGACACTTGGTGTTCCTCAGGTTCTGTTCTCTCAAACGGTACATTAGTCCAAACCGGTGGTTTCAACGATGGTGAACGTCGAATTCGAATGTTCACGCCATGTTTCAATGAAAATTGTGATTGGATAGAATTCCCAAGTTACTTATCCGAAAGAAGATGGTATGCAACAAATCAAATACTACCGGATAATCGCATTATAATTATTGGTGGTAGAAGACAATTCAACTATGAATTCTTTCCTAAAACAATAACTTCTTCTTCTTCGTCTTCTTCATCAATTCATCTATCTTTTCTCCAAGAAACCAACGATCCAAGCGAAAACAACTTATATCCATTCGTTCATCTTCTACCTAATGGAAACCTTTTCATTTTCGCAAACACACGATCCATTTTATTTGATTACAAACAAAACGTTGTTGTTAAAGAATTTCCTGAGATTCCAGGTGGTGATCCTCATAACTATCCTAGTTCAGGATCATCTGTTCTTCTTCCATTAGACGAAAACCAAATCTCCATGGAAGCTACAATCATGATCTGTGGGGGAGCACCTCGAGGATCATTCGAAGCTGCAAAGGGAAAGAACTTCATGCCAGCACTTAAAACATGTGGATTTCTCAAAGTAACGGATTCGAATCCTTGTTGGATTATTGAGAATATGCCAATGGCAAGAGTAATGGGAGACATGTTAATTCTACCTAACGGTGATGTTATTATAATTAACGGCGCTGGATCAGGTACAGCTGGATGGGAAAACGGGCGTCAACCTGTCTTAACACCGGTAATTTTCCGTTCAACAGAAACCAAATCAGATAAACGGTTTAGTGTAATGTCACCAGCTTCTAGACCTAGACTCTACCATTCATCTGCAATTGTGTTAAGAGATGGAAGAGTTTTAGTTGGTGGTAGTAATCCACATGTAAATTACAATTTTACCGGAGTTGAATTTCCAACCGATTTAAGCTTAGAGGCATTTTCTCCGCCCTATTTGTCGCCCGAGTTTGATCTGGTGCGGCCAACGATTTGGCATGTCACCAATACCATTTTAGGGTATAGGGTGTTTTATTACGTGACATTTACGGTAGCTAATTTTGCTTCGGCAAGTGAAGTTTCCGTTAAGTTATTGGCACCGTCATTTACTACACATTCTTTTGGAATGAATCAGAGGATGGTGGTTTTGAAGTTGATTGGTGTAACAATGGTGAGTTTGGATATTTATTATGCTACCGTGGTTGGACCATCTACTCAAGAGATTGCACCACCAGGTTATTACCTTTTGTTTTTGGTGCATGCGGGTGTGCCTAGTTCAGGTGAGTGGGTGCAACTCATGTAA

Protein sequence

>MS.gene024604.t1

MHMQLSHNNKIIIFDRTDFGPSNLPLSNGKCRMDPYDTALKTDCTAHSVLYDIATNTFRSLTVQTDTWCSSGSVLSNGTLVQTGGFNDGERRIRMFTPCFNENCDWIEFPSYLSERRWYATNQILPDNRIIIIGGRRQFNYEFFPKTITSSSSSSSSIHLSFLQETNDPSENNLYPFVHLLPNGNLFIFANTRSILFDYKQNVVVKEFPEIPGGDPHNYPSSGSSVLLPLDENQISMEATIMICGGAPRGSFEAAKGKNFMPALKTCGFLKVTDSNPCWIIENMPMARVMGDMLILPNGDVIIINGAGSGTAGWENGRQPVLTPVIFRSTETKSDKRFSVMSPASRPRLYHSSAIVLRDGRVLVGGSNPHVNYNFTGVEFPTDLSLEAFSPPYLSPEFDLVRPTIWHVTNTILGYRVFYYVTFTVANFASASEVSVKLLAPSFTTHSFGMNQRMVVLKLIGVTMVSLDIYYATVVGPSTQEIAPPGYYLLFLVHAGVPSSGEWVQLM