Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050500.t1 | XP_003626387.1 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.40E-285 | 991.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050500.t1 | Q3HRQ2 | 44.0 | 509 | 268 | 10 | 1 | 507 | 29 | 522 | 4.2e-116 | 419.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050500.t1 | G7L0T4 | 96.9 | 508 | 15 | 1 | 1 | 507 | 63 | 570 | 1.0e-285 | 991.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014446 | MS.gene050500 | PPI |
| MS.gene63972 | MS.gene050500 | PPI |
| MS.gene050500 | MS.gene064736 | PPI |
| MS.gene27027 | MS.gene050500 | PPI |
| MS.gene050500 | MS.gene69423 | PPI |
| MS.gene050500 | MS.gene82837 | PPI |
| MS.gene42280 | MS.gene050500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050500.t1 | MTR_7g114530 | 97.441 | 508 | 12 | 1 | 1 | 507 | 63 | 570 | 0.0 | 1024 |
| MS.gene050500.t1 | MTR_1g023570 | 59.136 | 509 | 197 | 5 | 1 | 507 | 44 | 543 | 0.0 | 611 |
| MS.gene050500.t1 | MTR_3g113210 | 57.558 | 516 | 203 | 8 | 1 | 507 | 47 | 555 | 0.0 | 584 |
| MS.gene050500.t1 | MTR_5g038410 | 52.963 | 540 | 215 | 9 | 1 | 506 | 1 | 535 | 0.0 | 573 |
| MS.gene050500.t1 | MTR_6g004960 | 53.996 | 513 | 223 | 7 | 1 | 507 | 11 | 516 | 0.0 | 552 |
| MS.gene050500.t1 | MTR_3g075520 | 44.660 | 515 | 269 | 9 | 1 | 506 | 1 | 508 | 1.31e-152 | 445 |
| MS.gene050500.t1 | MTR_4g019520 | 47.358 | 511 | 243 | 11 | 1 | 506 | 42 | 531 | 1.78e-145 | 428 |
| MS.gene050500.t1 | MTR_8g102900 | 44.874 | 517 | 264 | 13 | 1 | 506 | 126 | 632 | 1.14e-141 | 422 |
| MS.gene050500.t1 | MTR_6g088300 | 40.494 | 526 | 282 | 11 | 1 | 506 | 70 | 584 | 9.28e-129 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050500.t1 | AT3G57620 | 63.922 | 510 | 168 | 7 | 1 | 506 | 49 | 546 | 0.0 | 674 |
| MS.gene050500.t1 | AT1G14430 | 55.364 | 522 | 205 | 10 | 1 | 506 | 55 | 564 | 0.0 | 570 |
| MS.gene050500.t1 | AT1G19900 | 53.333 | 510 | 227 | 7 | 1 | 506 | 45 | 547 | 0.0 | 554 |
| MS.gene050500.t1 | AT1G75620 | 54.028 | 509 | 220 | 7 | 1 | 506 | 49 | 546 | 0.0 | 550 |
| MS.gene050500.t1 | AT3G53950 | 43.945 | 512 | 267 | 10 | 1 | 507 | 48 | 544 | 7.47e-148 | 434 |
| MS.gene050500.t1 | AT5G19580 | 43.564 | 505 | 269 | 11 | 9 | 507 | 100 | 594 | 4.68e-143 | 424 |
| MS.gene050500.t1 | AT1G67290 | 44.773 | 507 | 262 | 12 | 9 | 507 | 119 | 615 | 8.45e-141 | 419 |
Find 113 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGGATCGTTGGTTTCT+TGG | 0.138988 | 7.2:-2916726 | None:intergenic |
| TGAAGTTTCCGTTAAGTTAT+TGG | 0.155144 | 7.2:+2917533 | MS.gene050500:CDS |
| ATCAAACTCGGGCGACAAAT+AGG | 0.226207 | 7.2:-2917412 | None:intergenic |
| TTGTTTGTAATCAAATAAAA+TGG | 0.234406 | 7.2:-2916818 | None:intergenic |
| GATAATCGCATTATAATTAT+TGG | 0.236980 | 7.2:+2916616 | MS.gene050500:CDS |
| ACTAAACCGTTTATCTGATT+TGG | 0.256968 | 7.2:-2917232 | None:intergenic |
| TCCAACCGATTTAAGCTTAG+AGG | 0.277351 | 7.2:+2917377 | MS.gene050500:CDS |
| TTCGTTCATCTTCTACCTAA+TGG | 0.307167 | 7.2:+2916766 | MS.gene050500:CDS |
| AAACACCCTATACCCTAAAA+TGG | 0.308294 | 7.2:-2917469 | None:intergenic |
| TCGTTTACTACACATTCTTT+TGG | 0.309650 | 7.2:+2917561 | MS.gene050500:CDS |
| CTTCTTTCGGATAAGTAACT+TGG | 0.333768 | 7.2:-2916565 | None:intergenic |
| ATCTGGTGCGGCCAACGATT+TGG | 0.353634 | 7.2:+2917433 | MS.gene050500:CDS |
| TGGTGTAACAATGGTGAGTT+TGG | 0.365132 | 7.2:+2917617 | MS.gene050500:CDS |
| TTGTAGCTTCCATGGAGATT+TGG | 0.388161 | 7.2:-2916936 | None:intergenic |
| CATGCGGGTGTGCCTAGTTC+AGG | 0.389805 | 7.2:+2917717 | MS.gene050500:CDS |
| TCTGTTGAACGGAAAATTAC+CGG | 0.394920 | 7.2:-2917207 | None:intergenic |
| CCTCATAACTATCCTAGTTC+AGG | 0.395696 | 7.2:+2916883 | MS.gene050500:CDS |
| AAAGAATTTCCTGAGATTCC+AGG | 0.397033 | 7.2:+2916853 | MS.gene050500:CDS |
| TGTTGCATACCATCTTCTTT+CGG | 0.397098 | 7.2:-2916578 | None:intergenic |
| ATGCCAATGGCAAGAGTAAT+GGG | 0.406898 | 7.2:+2917087 | MS.gene050500:CDS |
| GTTTCAATGAAAATTGTGAT+TGG | 0.409383 | 7.2:+2916533 | MS.gene050500:CDS |
| TCAAACTCGGGCGACAAATA+GGG | 0.414466 | 7.2:-2917411 | None:intergenic |
| CATCGTTGAAACCACCGGTT+TGG | 0.418440 | 7.2:-2916480 | None:intergenic |
| GGATCACCACCTGGAATCTC+AGG | 0.427719 | 7.2:-2916862 | None:intergenic |
| GGTGATGTTATTATAATTAA+CGG | 0.429135 | 7.2:+2917132 | MS.gene050500:CDS |
| TAACGGATTCGAATCCTTGT+TGG | 0.429188 | 7.2:+2917052 | MS.gene050500:CDS |
| TTTGTCGCCCGAGTTTGATC+TGG | 0.432911 | 7.2:+2917416 | MS.gene050500:CDS |
| AAAATGAAAAGGTTTCCATT+AGG | 0.434658 | 7.2:-2916781 | None:intergenic |
| GCCTCTAAGCTTAAATCGGT+TGG | 0.441570 | 7.2:-2917378 | None:intergenic |
| TCAAATCTCCCTCTTTCAAA+TGG | 0.442557 | 7.2:+2916301 | MS.gene050500:CDS |
| ATAATTAACGGCGCTGGATC+AGG | 0.447525 | 7.2:+2917144 | MS.gene050500:CDS |
| AAATGCCTCTAAGCTTAAAT+CGG | 0.449489 | 7.2:-2917382 | None:intergenic |
| GGTACAGCTGGATGGGAAAA+CGG | 0.450387 | 7.2:+2917165 | MS.gene050500:CDS |
| CCTATACCCTAAAATGGTAT+TGG | 0.451118 | 7.2:-2917463 | None:intergenic |
| TTTGAAAGAGGGAGATTTGA+AGG | 0.457232 | 7.2:-2916298 | None:intergenic |
| AGTGTCTGTTTGTACAGTTA+AGG | 0.459742 | 7.2:-2916416 | None:intergenic |
| TCTCCCATTACTCTTGCCAT+TGG | 0.460857 | 7.2:-2917090 | None:intergenic |
| GTACAGCTGGATGGGAAAAC+GGG | 0.462956 | 7.2:+2917166 | MS.gene050500:CDS |
| ATTTATTATGCTACTGTGGT+TGG | 0.464726 | 7.2:+2917642 | MS.gene050500:CDS |
| GTTATTATAATTAACGGCGC+TGG | 0.464794 | 7.2:+2917138 | MS.gene050500:CDS |
| CGACGGTGCCAATAACTTAA+CGG | 0.464822 | 7.2:-2917541 | None:intergenic |
| GAGATTTGAAGGGCCAAAAT+CGG | 0.469183 | 7.2:-2916287 | None:intergenic |
| GTGTGTTTGCGAAAATGAAA+AGG | 0.469444 | 7.2:-2916792 | None:intergenic |
| TCAGGTTCTGTTCTCTCAAA+CGG | 0.470534 | 7.2:+2916448 | MS.gene050500:CDS |
| ATAATTATAATGCGATTATC+CGG | 0.473131 | 7.2:-2916613 | None:intergenic |
| CAGAAACCAAATCAGATAAA+CGG | 0.475967 | 7.2:+2917226 | MS.gene050500:CDS |
| CGACACTTGCCATTTGAAAG+AGG | 0.478870 | 7.2:-2916310 | None:intergenic |
| GGCGCTGGATCAGGTACAGC+TGG | 0.480169 | 7.2:+2917153 | MS.gene050500:CDS |
| GGTGCAATCTCTTGAGTAGA+TGG | 0.483794 | 7.2:-2917666 | None:intergenic |
| GATCATGATTGTAGCTTCCA+TGG | 0.486690 | 7.2:-2916944 | None:intergenic |
| CTGATTTGGTTTCTGTTGAA+CGG | 0.498979 | 7.2:-2917218 | None:intergenic |
| TAAGGATCGGAATGTGTTTG+TGG | 0.500625 | 7.2:-2916398 | None:intergenic |
| AACGGTACATTAGTCCAAAC+CGG | 0.503003 | 7.2:+2916466 | MS.gene050500:CDS |
| ACAGACACTTGGTGTTCCTC+AGG | 0.504225 | 7.2:+2916430 | MS.gene050500:CDS |
| TTAACACAATTGCAGATGAA+TGG | 0.511755 | 7.2:-2917287 | None:intergenic |
| AACAGAATGAGCAGTGCAAT+CGG | 0.515620 | 7.2:-2916362 | None:intergenic |
| TCTGCAATTGTGTTAAGAGA+TGG | 0.518046 | 7.2:+2917294 | MS.gene050500:CDS |
| AAGCTACAATCATGATCTGT+GGG | 0.518476 | 7.2:+2916950 | MS.gene050500:CDS |
| CTGGATCAGGTACAGCTGGA+TGG | 0.518785 | 7.2:+2917157 | MS.gene050500:CDS |
| GTTACTTATCCGAAAGAAGA+TGG | 0.518841 | 7.2:+2916569 | MS.gene050500:CDS |
| TATGCCAATGGCAAGAGTAA+TGG | 0.519941 | 7.2:+2917086 | MS.gene050500:CDS |
| ATTATAATAACATCACCGTT+AGG | 0.520481 | 7.2:-2917126 | None:intergenic |
| TTCTTTCGGATAAGTAACTT+GGG | 0.521465 | 7.2:-2916564 | None:intergenic |
| AAAATTACCGGTGTTAAGAC+AGG | 0.525245 | 7.2:-2917195 | None:intergenic |
| TGCAACAAATCAAATACTAC+CGG | 0.532156 | 7.2:+2916594 | MS.gene050500:CDS |
| TGGATCAGGTACAGCTGGAT+GGG | 0.533783 | 7.2:+2917158 | MS.gene050500:CDS |
| GTGTGCCTAGTTCAGGTGAG+TGG | 0.533842 | 7.2:+2917724 | MS.gene050500:CDS |
| AGAACAGATGATCCTGAACT+AGG | 0.534256 | 7.2:-2916895 | None:intergenic |
| GACACTTGCCATTTGAAAGA+GGG | 0.534985 | 7.2:-2916309 | None:intergenic |
| TTGAAGGGCCAAAATCGGTT+CGG | 0.542479 | 7.2:-2916282 | None:intergenic |
| GTAAAATTGTAATTTACATG+TGG | 0.547520 | 7.2:-2917342 | None:intergenic |
| TTCACCATCGTTGAAACCAC+CGG | 0.549101 | 7.2:-2916485 | None:intergenic |
| TGCACCCACTCACCTGAACT+AGG | 0.551187 | 7.2:-2917729 | None:intergenic |
| TTCAAATGGCAAGTGTCGAA+TGG | 0.551733 | 7.2:+2916315 | MS.gene050500:CDS |
| TGGCCGCACCAGATCAAACT+CGG | 0.554483 | 7.2:-2917424 | None:intergenic |
| GCAGATGAATGGTAGAGTCT+AGG | 0.556251 | 7.2:-2917276 | None:intergenic |
| GGATCATTCGAAGCTGCAAA+GGG | 0.556897 | 7.2:+2916985 | MS.gene050500:CDS |
| CCTGAACTAGGATAGTTATG+AGG | 0.558050 | 7.2:-2916883 | None:intergenic |
| AATCGCATTATAATTATTGG+TGG | 0.567057 | 7.2:+2916619 | MS.gene050500:CDS |
| ATGTGGATTTCTCAAAGTAA+CGG | 0.567949 | 7.2:+2917035 | MS.gene050500:CDS |
| TGTGCCTAGTTCAGGTGAGT+GGG | 0.569338 | 7.2:+2917725 | MS.gene050500:CDS |
| CGCCCGAGTTTGATCTGGTG+CGG | 0.573599 | 7.2:+2917421 | MS.gene050500:CDS |
| GAAGTTGATTGGTGTAACAA+TGG | 0.574279 | 7.2:+2917608 | MS.gene050500:CDS |
| TTGAAAGAGGGAGATTTGAA+GGG | 0.575769 | 7.2:-2916297 | None:intergenic |
| CTGTTTGTACAGTTAAGGAT+CGG | 0.578161 | 7.2:-2916411 | None:intergenic |
| AGGATCATTCGAAGCTGCAA+AGG | 0.579586 | 7.2:+2916984 | MS.gene050500:CDS |
| ATCGGTTGGAAATTCAACTC+CGG | 0.585189 | 7.2:-2917364 | None:intergenic |
| ATGCCAGCACTTAAAACATG+TGG | 0.586066 | 7.2:+2917018 | MS.gene050500:CDS |
| GGATATTTATTATGCTACTG+TGG | 0.592685 | 7.2:+2917638 | MS.gene050500:CDS |
| TGGAATGAATCAGAGGATGG+TGG | 0.596770 | 7.2:+2917581 | MS.gene050500:CDS |
| GAAGCTACAATCATGATCTG+TGG | 0.597875 | 7.2:+2916949 | MS.gene050500:CDS |
| GATTATTGAGAATATGCCAA+TGG | 0.598570 | 7.2:+2917074 | MS.gene050500:CDS |
| GACATGTTAATTCTACCTAA+CGG | 0.599177 | 7.2:+2917111 | MS.gene050500:CDS |
| AGACGAAAACCAAATCTCCA+TGG | 0.602677 | 7.2:+2916927 | MS.gene050500:CDS |
| TTGGTGACATGCCAAATCGT+TGG | 0.613442 | 7.2:-2917444 | None:intergenic |
| TAGAGTCTAGGTCTAGAAGC+TGG | 0.617233 | 7.2:-2917264 | None:intergenic |
| TAACTGTACAAACAGACACT+TGG | 0.621175 | 7.2:+2916419 | MS.gene050500:CDS |
| GGCCGCACCAGATCAAACTC+GGG | 0.621190 | 7.2:-2917423 | None:intergenic |
| ACTCAAGAGATTGCACCACC+AGG | 0.621834 | 7.2:+2917672 | MS.gene050500:CDS |
| TAGTTATGAGGATCACCACC+TGG | 0.625212 | 7.2:-2916871 | None:intergenic |
| TTAGGTAGAAGATGAACGAA+TGG | 0.630921 | 7.2:-2916763 | None:intergenic |
| CAAACCGGTGGTTTCAACGA+TGG | 0.662190 | 7.2:+2916481 | MS.gene050500:CDS |
| GCTACAATCATGATCTGTGG+GGG | 0.668137 | 7.2:+2916952 | MS.gene050500:CDS |
| AACTCGGGCGACAAATAGGG+CGG | 0.685726 | 7.2:-2917408 | None:intergenic |
| GCAGCTTCGAATGATCCTCG+AGG | 0.689096 | 7.2:-2916979 | None:intergenic |
| GCGTCAACCTGTCTTAACAC+CGG | 0.690909 | 7.2:+2917188 | MS.gene050500:CDS |
| AGCTACAATCATGATCTGTG+GGG | 0.693738 | 7.2:+2916951 | MS.gene050500:CDS |
| GAATTTCCTGAGATTCCAGG+TGG | 0.707449 | 7.2:+2916856 | MS.gene050500:CDS |
| AACAAAAGGTAATAACCTGG+TGG | 0.707456 | 7.2:-2917687 | None:intergenic |
| AAAGAATGTGTAGTAAACGA+CGG | 0.717580 | 7.2:-2917558 | None:intergenic |
| GTTTGAGAGAACAGAACCTG+AGG | 0.719623 | 7.2:-2916446 | None:intergenic |
| ATATTCTCAATAATCCAACA+AGG | 0.727484 | 7.2:-2917066 | None:intergenic |
| GGTACATTAGTCCAAACCGG+TGG | 0.732000 | 7.2:+2916469 | MS.gene050500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTGTAATCAAATAAAA+TGG | - | chr7.2:2916821-2916840 | None:intergenic | 15.0% |
| !! | ATAATTATAATGCGATTATC+CGG | - | chr7.2:2916616-2916635 | None:intergenic | 20.0% |
| !! | GATAATCGCATTATAATTAT+TGG | + | chr7.2:2916616-2916635 | MS.gene050500:CDS | 20.0% |
| !! | GGTGATGTTATTATAATTAA+CGG | + | chr7.2:2917132-2917151 | MS.gene050500:CDS | 20.0% |
| !! | GTAAAATTGTAATTTACATG+TGG | - | chr7.2:2917345-2917364 | None:intergenic | 20.0% |
| !!! | CATGTAAATTACAATTTTAC+CGG | + | chr7.2:2917345-2917364 | MS.gene050500:CDS | 20.0% |
| ! | AAAAACAAAAGGTAATAACC+TGG | - | chr7.2:2917693-2917712 | None:intergenic | 25.0% |
| ! | AAAATGAAAAGGTTTCCATT+AGG | - | chr7.2:2916784-2916803 | None:intergenic | 25.0% |
| ! | AATCGCATTATAATTATTGG+TGG | + | chr7.2:2916619-2916638 | MS.gene050500:CDS | 25.0% |
| ! | ATATTCTCAATAATCCAACA+AGG | - | chr7.2:2917069-2917088 | None:intergenic | 25.0% |
| ! | ATTATAATAACATCACCGTT+AGG | - | chr7.2:2917129-2917148 | None:intergenic | 25.0% |
| ! | GTTTCAATGAAAATTGTGAT+TGG | + | chr7.2:2916533-2916552 | MS.gene050500:CDS | 25.0% |
| !! | GAAGAAGAAGTTATTGTTTT+AGG | - | chr7.2:2916673-2916692 | None:intergenic | 25.0% |
| !! | TCACAATTTTCATTGAAACA+TGG | - | chr7.2:2916532-2916551 | None:intergenic | 25.0% |
| !!! | AGGTTATTACCTTTTGTTTT+TGG | + | chr7.2:2917692-2917711 | MS.gene050500:CDS | 25.0% |
| !!! | GTTTTATTACGTGACATTTA+CGG | + | chr7.2:2917488-2917507 | MS.gene050500:CDS | 25.0% |
| AAAGAATGTGTAGTAAACGA+CGG | - | chr7.2:2917561-2917580 | None:intergenic | 30.0% | |
| AAATGCCTCTAAGCTTAAAT+CGG | - | chr7.2:2917385-2917404 | None:intergenic | 30.0% | |
| ACTAAACCGTTTATCTGATT+TGG | - | chr7.2:2917235-2917254 | None:intergenic | 30.0% | |
| ATGTGGATTTCTCAAAGTAA+CGG | + | chr7.2:2917035-2917054 | MS.gene050500:CDS | 30.0% | |
| ATTTATTATGCTACTGTGGT+TGG | + | chr7.2:2917642-2917661 | MS.gene050500:CDS | 30.0% | |
| CAGAAACCAAATCAGATAAA+CGG | + | chr7.2:2917226-2917245 | MS.gene050500:CDS | 30.0% | |
| GACATGTTAATTCTACCTAA+CGG | + | chr7.2:2917111-2917130 | MS.gene050500:CDS | 30.0% | |
| GATTATTGAGAATATGCCAA+TGG | + | chr7.2:2917074-2917093 | MS.gene050500:CDS | 30.0% | |
| GGATATTTATTATGCTACTG+TGG | + | chr7.2:2917638-2917657 | MS.gene050500:CDS | 30.0% | |
| TGAAGTTTCCGTTAAGTTAT+TGG | + | chr7.2:2917533-2917552 | MS.gene050500:CDS | 30.0% | |
| TGCAACAAATCAAATACTAC+CGG | + | chr7.2:2916594-2916613 | MS.gene050500:CDS | 30.0% | |
| TTAACACAATTGCAGATGAA+TGG | - | chr7.2:2917290-2917309 | None:intergenic | 30.0% | |
| TTCTTTCGGATAAGTAACTT+GGG | - | chr7.2:2916567-2916586 | None:intergenic | 30.0% | |
| ! | ATGTCACCAATACCATTTTA+GGG | + | chr7.2:2917457-2917476 | MS.gene050500:CDS | 30.0% |
| ! | TCGTTTACTACACATTCTTT+TGG | + | chr7.2:2917561-2917580 | MS.gene050500:CDS | 30.0% |
| !!! | ATTCTTTTGGAATGAATCAG+AGG | + | chr7.2:2917574-2917593 | MS.gene050500:CDS | 30.0% |
| !!! | CAATACCATTTTAGGGTATA+GGG | + | chr7.2:2917464-2917483 | MS.gene050500:CDS | 30.0% |
| AAACACCCTATACCCTAAAA+TGG | - | chr7.2:2917472-2917491 | None:intergenic | 35.0% | |
| AAAGAATTTCCTGAGATTCC+AGG | + | chr7.2:2916853-2916872 | MS.gene050500:CDS | 35.0% | |
| AACAAAAGGTAATAACCTGG+TGG | - | chr7.2:2917690-2917709 | None:intergenic | 35.0% | |
| AAGCTACAATCATGATCTGT+GGG | + | chr7.2:2916950-2916969 | MS.gene050500:CDS | 35.0% | |
| AGTGTCTGTTTGTACAGTTA+AGG | - | chr7.2:2916419-2916438 | None:intergenic | 35.0% | |
| CCTATACCCTAAAATGGTAT+TGG | - | chr7.2:2917466-2917485 | None:intergenic | 35.0% | |
| CTGTTTGTACAGTTAAGGAT+CGG | - | chr7.2:2916414-2916433 | None:intergenic | 35.0% | |
| CTTCTTTCGGATAAGTAACT+TGG | - | chr7.2:2916568-2916587 | None:intergenic | 35.0% | |
| GTGTGTTTGCGAAAATGAAA+AGG | - | chr7.2:2916795-2916814 | None:intergenic | 35.0% | |
| GTTACTTATCCGAAAGAAGA+TGG | + | chr7.2:2916569-2916588 | MS.gene050500:CDS | 35.0% | |
| GTTATTATAATTAACGGCGC+TGG | + | chr7.2:2917138-2917157 | MS.gene050500:CDS | 35.0% | |
| TAACTGTACAAACAGACACT+TGG | + | chr7.2:2916419-2916438 | MS.gene050500:CDS | 35.0% | |
| TCAAATCTCCCTCTTTCAAA+TGG | + | chr7.2:2916301-2916320 | MS.gene050500:CDS | 35.0% | |
| TCTGCAATTGTGTTAAGAGA+TGG | + | chr7.2:2917294-2917313 | MS.gene050500:CDS | 35.0% | |
| TCTGTTGAACGGAAAATTAC+CGG | - | chr7.2:2917210-2917229 | None:intergenic | 35.0% | |
| TGTTGCATACCATCTTCTTT+CGG | - | chr7.2:2916581-2916600 | None:intergenic | 35.0% | |
| TTAGGTAGAAGATGAACGAA+TGG | - | chr7.2:2916766-2916785 | None:intergenic | 35.0% | |
| TTCGTTCATCTTCTACCTAA+TGG | + | chr7.2:2916766-2916785 | MS.gene050500:CDS | 35.0% | |
| TTGAAAGAGGGAGATTTGAA+GGG | - | chr7.2:2916300-2916319 | None:intergenic | 35.0% | |
| TTTGAAAGAGGGAGATTTGA+AGG | - | chr7.2:2916301-2916320 | None:intergenic | 35.0% | |
| ! | AAAATTACCGGTGTTAAGAC+AGG | - | chr7.2:2917198-2917217 | None:intergenic | 35.0% |
| ! | CATGTCACCAATACCATTTT+AGG | + | chr7.2:2917456-2917475 | MS.gene050500:CDS | 35.0% |
| ! | GAAGTTGATTGGTGTAACAA+TGG | + | chr7.2:2917608-2917627 | MS.gene050500:CDS | 35.0% |
| ! | TACGGTAGCTAATTTTGCTT+CGG | + | chr7.2:2917506-2917525 | MS.gene050500:CDS | 35.0% |
| !! | AATCCACATGTTTTAAGTGC+TGG | - | chr7.2:2917024-2917043 | None:intergenic | 35.0% |
| !! | AGAGATGGAAGAGTTTTAGT+TGG | + | chr7.2:2917309-2917328 | MS.gene050500:CDS | 35.0% |
| !! | CTGATTTGGTTTCTGTTGAA+CGG | - | chr7.2:2917221-2917240 | None:intergenic | 35.0% |
| !! | GGATATAAGTTGTTTTCGCT+TGG | - | chr7.2:2916745-2916764 | None:intergenic | 35.0% |
| !! | TTTTAAGGGCAGTATCGTAT+GGG | - | chr7.2:2916342-2916361 | None:intergenic | 35.0% |
| !!! | ATGGTGGTTTTGAAGTTGAT+TGG | + | chr7.2:2917597-2917616 | MS.gene050500:CDS | 35.0% |
| !!! | CCAATACCATTTTAGGGTAT+AGG | + | chr7.2:2917463-2917482 | MS.gene050500:CDS | 35.0% |
| !!! | GAGATTTGGTTTTCGTCTAA+TGG | - | chr7.2:2916925-2916944 | None:intergenic | 35.0% |
| !!! | TTTTGGAATGAATCAGAGGA+TGG | + | chr7.2:2917578-2917597 | MS.gene050500:CDS | 35.0% |
| AACAGAATGAGCAGTGCAAT+CGG | - | chr7.2:2916365-2916384 | None:intergenic | 40.0% | |
| AACGGTACATTAGTCCAAAC+CGG | + | chr7.2:2916466-2916485 | MS.gene050500:CDS | 40.0% | |
| AGAACAGATGATCCTGAACT+AGG | - | chr7.2:2916898-2916917 | None:intergenic | 40.0% | |
| AGACGAAAACCAAATCTCCA+TGG | + | chr7.2:2916927-2916946 | MS.gene050500:CDS | 40.0% | |
| AGCTACAATCATGATCTGTG+GGG | + | chr7.2:2916951-2916970 | MS.gene050500:CDS | 40.0% | |
| ATCGGTTGGAAATTCAACTC+CGG | - | chr7.2:2917367-2917386 | None:intergenic | 40.0% | |
| ATGCCAATGGCAAGAGTAAT+GGG | + | chr7.2:2917087-2917106 | MS.gene050500:CDS | 40.0% | |
| ATGCCAGCACTTAAAACATG+TGG | + | chr7.2:2917018-2917037 | MS.gene050500:CDS | 40.0% | |
| CCTCATAACTATCCTAGTTC+AGG | + | chr7.2:2916883-2916902 | MS.gene050500:CDS | 40.0% | |
| CCTGAACTAGGATAGTTATG+AGG | - | chr7.2:2916886-2916905 | None:intergenic | 40.0% | |
| GAAGCTACAATCATGATCTG+TGG | + | chr7.2:2916949-2916968 | MS.gene050500:CDS | 40.0% | |
| GAGATTTGAAGGGCCAAAAT+CGG | - | chr7.2:2916290-2916309 | None:intergenic | 40.0% | |
| GATCATGATTGTAGCTTCCA+TGG | - | chr7.2:2916947-2916966 | None:intergenic | 40.0% | |
| TAAGGATCGGAATGTGTTTG+TGG | - | chr7.2:2916401-2916420 | None:intergenic | 40.0% | |
| TATGCCAATGGCAAGAGTAA+TGG | + | chr7.2:2917086-2917105 | MS.gene050500:CDS | 40.0% | |
| TCAGGTTCTGTTCTCTCAAA+CGG | + | chr7.2:2916448-2916467 | MS.gene050500:CDS | 40.0% | |
| TGGTGTAACAATGGTGAGTT+TGG | + | chr7.2:2917617-2917636 | MS.gene050500:CDS | 40.0% | |
| TTGTAGCTTCCATGGAGATT+TGG | - | chr7.2:2916939-2916958 | None:intergenic | 40.0% | |
| ! | GACACTTGCCATTTGAAAGA+GGG | - | chr7.2:2916312-2916331 | None:intergenic | 40.0% |
| ! | TCCAACCGATTTAAGCTTAG+AGG | + | chr7.2:2917377-2917396 | MS.gene050500:CDS | 40.0% |
| !! | AGCAGTGCAATCGGTTTTAA+GGG | - | chr7.2:2916356-2916375 | None:intergenic | 40.0% |
| !! | ATTTTCGACCGAACCGATTT+TGG | + | chr7.2:2916274-2916293 | MS.gene050500:CDS | 40.0% |
| !! | TAACGGATTCGAATCCTTGT+TGG | + | chr7.2:2917052-2917071 | MS.gene050500:CDS | 40.0% |
| !! | TTCAAATGGCAAGTGTCGAA+TGG | + | chr7.2:2916315-2916334 | MS.gene050500:CDS | 40.0% |
| !!! | CCTTTTGTTTTTGGTGCATG+CGG | + | chr7.2:2917701-2917720 | MS.gene050500:CDS | 40.0% |
| !!! | CTTTTGTTTTTGGTGCATGC+GGG | + | chr7.2:2917702-2917721 | MS.gene050500:CDS | 40.0% |
| !!! | GATGGAAGAGTTTTAGTTGG+TGG | + | chr7.2:2917312-2917331 | MS.gene050500:CDS | 40.0% |
| !!! | GTTTTAAGGGCAGTATCGTA+TGG | - | chr7.2:2916343-2916362 | None:intergenic | 40.0% |
| AGGATCATTCGAAGCTGCAA+AGG | + | chr7.2:2916984-2917003 | MS.gene050500:CDS | 45.0% | |
| ATCAAACTCGGGCGACAAAT+AGG | - | chr7.2:2917415-2917434 | None:intergenic | 45.0% | |
| CCGCATGCACCAAAAACAAA+AGG | - | chr7.2:2917704-2917723 | None:intergenic | 45.0% | |
| GAATTTCCTGAGATTCCAGG+TGG | + | chr7.2:2916856-2916875 | MS.gene050500:CDS | 45.0% | |
| GCAGATGAATGGTAGAGTCT+AGG | - | chr7.2:2917279-2917298 | None:intergenic | 45.0% | |
| GCCTCTAAGCTTAAATCGGT+TGG | - | chr7.2:2917381-2917400 | None:intergenic | 45.0% | |
| GCTACAATCATGATCTGTGG+GGG | + | chr7.2:2916952-2916971 | MS.gene050500:CDS | 45.0% | |
| GGATCATTCGAAGCTGCAAA+GGG | + | chr7.2:2916985-2917004 | MS.gene050500:CDS | 45.0% | |
| GGTGCAATCTCTTGAGTAGA+TGG | - | chr7.2:2917669-2917688 | None:intergenic | 45.0% | |
| GTTTGAGAGAACAGAACCTG+AGG | - | chr7.2:2916449-2916468 | None:intergenic | 45.0% | |
| TAGAGTCTAGGTCTAGAAGC+TGG | - | chr7.2:2917267-2917286 | None:intergenic | 45.0% | |
| TAGTTATGAGGATCACCACC+TGG | - | chr7.2:2916874-2916893 | None:intergenic | 45.0% | |
| TCAAACTCGGGCGACAAATA+GGG | - | chr7.2:2917414-2917433 | None:intergenic | 45.0% | |
| TCTCCCATTACTCTTGCCAT+TGG | - | chr7.2:2917093-2917112 | None:intergenic | 45.0% | |
| TGGAATGAATCAGAGGATGG+TGG | + | chr7.2:2917581-2917600 | MS.gene050500:CDS | 45.0% | |
| TTCACCATCGTTGAAACCAC+CGG | - | chr7.2:2916488-2916507 | None:intergenic | 45.0% | |
| TTGAAGGGCCAAAATCGGTT+CGG | - | chr7.2:2916285-2916304 | None:intergenic | 45.0% | |
| ! | ATAATTAACGGCGCTGGATC+AGG | + | chr7.2:2917144-2917163 | MS.gene050500:CDS | 45.0% |
| ! | CGACACTTGCCATTTGAAAG+AGG | - | chr7.2:2916313-2916332 | None:intergenic | 45.0% |
| ! | CGACGGTGCCAATAACTTAA+CGG | - | chr7.2:2917544-2917563 | None:intergenic | 45.0% |
| ! | TTGGTGACATGCCAAATCGT+TGG | - | chr7.2:2917447-2917466 | None:intergenic | 45.0% |
| !! | GAGCAGTGCAATCGGTTTTA+AGG | - | chr7.2:2916357-2916376 | None:intergenic | 45.0% |
| !! | GTTGTTTTCGCTTGGATCGT+TGG | - | chr7.2:2916737-2916756 | None:intergenic | 45.0% |
| ACTCAAGAGATTGCACCACC+AGG | + | chr7.2:2917672-2917691 | MS.gene050500:CDS | 50.0% | |
| CAAACCGGTGGTTTCAACGA+TGG | + | chr7.2:2916481-2916500 | MS.gene050500:CDS | 50.0% | |
| GCGTCAACCTGTCTTAACAC+CGG | + | chr7.2:2917188-2917207 | MS.gene050500:CDS | 50.0% | |
| GGTACAGCTGGATGGGAAAA+CGG | + | chr7.2:2917165-2917184 | MS.gene050500:CDS | 50.0% | |
| GGTACATTAGTCCAAACCGG+TGG | + | chr7.2:2916469-2916488 | MS.gene050500:CDS | 50.0% | |
| GTACAGCTGGATGGGAAAAC+GGG | + | chr7.2:2917166-2917185 | MS.gene050500:CDS | 50.0% | |
| TGGATCAGGTACAGCTGGAT+GGG | + | chr7.2:2917158-2917177 | MS.gene050500:CDS | 50.0% | |
| TGTGCCTAGTTCAGGTGAGT+GGG | + | chr7.2:2917725-2917744 | MS.gene050500:CDS | 50.0% | |
| TTTGTCGCCCGAGTTTGATC+TGG | + | chr7.2:2917416-2917435 | MS.gene050500:CDS | 50.0% | |
| ! | CATCGTTGAAACCACCGGTT+TGG | - | chr7.2:2916483-2916502 | None:intergenic | 50.0% |
| !! | ACAGACACTTGGTGTTCCTC+AGG | + | chr7.2:2916430-2916449 | MS.gene050500:CDS | 50.0% |
| !! | CGCTTGGATCGTTGGTTTCT+TGG | - | chr7.2:2916729-2916748 | None:intergenic | 50.0% |
| AACTCGGGCGACAAATAGGG+CGG | - | chr7.2:2917411-2917430 | None:intergenic | 55.0% | |
| ATCTGGTGCGGCCAACGATT+TGG | + | chr7.2:2917433-2917452 | MS.gene050500:CDS | 55.0% | |
| CTGGATCAGGTACAGCTGGA+TGG | + | chr7.2:2917157-2917176 | MS.gene050500:CDS | 55.0% | |
| GCAGCTTCGAATGATCCTCG+AGG | - | chr7.2:2916982-2917001 | None:intergenic | 55.0% | |
| GGATCACCACCTGGAATCTC+AGG | - | chr7.2:2916865-2916884 | None:intergenic | 55.0% | |
| GTGTGCCTAGTTCAGGTGAG+TGG | + | chr7.2:2917724-2917743 | MS.gene050500:CDS | 55.0% | |
| TGCACCCACTCACCTGAACT+AGG | - | chr7.2:2917732-2917751 | None:intergenic | 55.0% | |
| TGGCCGCACCAGATCAAACT+CGG | - | chr7.2:2917427-2917446 | None:intergenic | 55.0% | |
| CATGCGGGTGTGCCTAGTTC+AGG | + | chr7.2:2917717-2917736 | MS.gene050500:CDS | 60.0% | |
| CGCCCGAGTTTGATCTGGTG+CGG | + | chr7.2:2917421-2917440 | MS.gene050500:CDS | 60.0% | |
| GGCCGCACCAGATCAAACTC+GGG | - | chr7.2:2917426-2917445 | None:intergenic | 60.0% | |
| ! | GGCGCTGGATCAGGTACAGC+TGG | + | chr7.2:2917153-2917172 | MS.gene050500:CDS | 65.0% |
| !! | ATCTGTGGGGGAGCACCTCG+AGG | + | chr7.2:2916964-2916983 | MS.gene050500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 2916238 | 2917761 | 2916238 | ID=MS.gene050500 |
| chr7.2 | mRNA | 2916238 | 2917761 | 2916238 | ID=MS.gene050500.t1;Parent=MS.gene050500 |
| chr7.2 | exon | 2916238 | 2917761 | 2916238 | ID=MS.gene050500.t1.exon1;Parent=MS.gene050500.t1 |
| chr7.2 | CDS | 2916238 | 2917761 | 2916238 | ID=cds.MS.gene050500.t1;Parent=MS.gene050500.t1 |
| Gene Sequence |
| Protein sequence |
