Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01479.t1 | XP_024631490.1 | 94.1 | 306 | 18 | 0 | 1 | 306 | 2 | 307 | 1.80E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01479.t1 | Q6AY46 | 45.6 | 294 | 145 | 6 | 10 | 300 | 4 | 285 | 6.1e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01479.t1 | A2Q516 | 94.1 | 306 | 18 | 0 | 1 | 306 | 2 | 307 | 1.3e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01479 | MS.gene82633 | PPI |
| MS.gene21989 | MS.gene01479 | PPI |
| MS.gene01479 | MS.gene64211 | PPI |
| MS.gene027187 | MS.gene01479 | PPI |
| MS.gene24165 | MS.gene01479 | PPI |
| MS.gene01479 | MS.gene27063 | PPI |
| MS.gene01479 | MS.gene30096 | PPI |
| MS.gene01479 | MS.gene64008 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01479.t1 | MTR_6g047800 | 77.994 | 309 | 62 | 4 | 1 | 303 | 1 | 309 | 1.19e-172 | 480 |
| MS.gene01479.t1 | MTR_6g047800 | 79.000 | 300 | 57 | 4 | 10 | 303 | 1 | 300 | 1.20e-169 | 472 |
| MS.gene01479.t1 | MTR_2g014590 | 93.074 | 231 | 16 | 0 | 1 | 231 | 2 | 232 | 6.28e-161 | 448 |
| MS.gene01479.t1 | MTR_2g014570 | 98.361 | 61 | 1 | 0 | 246 | 306 | 6 | 66 | 2.07e-38 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01479.t1 | AT5G14600 | 69.182 | 318 | 86 | 2 | 1 | 306 | 1 | 318 | 7.22e-165 | 461 |
Find 57 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGCTTGGTTCTTGAATC+TGG | 0.235361 | 2.2:+68357066 | MS.gene01479:CDS |
| CTCTAAAGTATTCAACAATA+AGG | 0.250501 | 2.2:+68356921 | MS.gene01479:CDS |
| GATTAATCAGTTGTGGAGTT+AGG | 0.260288 | 2.2:+68358038 | MS.gene01479:CDS |
| TTGTGGAGTTAGGGACATTC+AGG | 0.262187 | 2.2:+68358048 | MS.gene01479:CDS |
| GATTGGATTGGAAAGCCTTT+TGG | 0.269508 | 2.2:+68356898 | MS.gene01479:CDS |
| TAGCTCCCACACCAGAATTA+TGG | 0.286409 | 2.2:+68356962 | MS.gene01479:CDS |
| GGATTTCCTGATGAGTTTAA+TGG | 0.286421 | 2.2:+68358076 | MS.gene01479:CDS |
| AACACTAGAGTCCATAATTC+TGG | 0.292506 | 2.2:-68356973 | None:intergenic |
| CAGATGCTGCCCTTTGTTCA+TGG | 0.315015 | 2.2:-68357164 | None:intergenic |
| TCCTGATGAGTTTAATGGCT+TGG | 0.351169 | 2.2:+68358081 | MS.gene01479:CDS |
| ATGTATTTGGAGATTGTTCC+TGG | 0.387434 | 2.2:+68357045 | MS.gene01479:CDS |
| GTGAAGACGAAAAGCTTTCA+TGG | 0.388067 | 2.2:+68360195 | MS.gene01479:CDS |
| CTTGAATCTGGAACTGGTAG+TGG | 0.396327 | 2.2:+68357078 | MS.gene01479:CDS |
| CGTTGTACTTGTTCGATACA+TGG | 0.406361 | 2.2:-68358199 | None:intergenic |
| TTTAAACATTCTGATTGGAT+TGG | 0.406520 | 2.2:+68356886 | MS.gene01479:CDS |
| AATGTTTAAAAGCACCTAAA+GGG | 0.409810 | 2.2:-68356873 | None:intergenic |
| CTTTGACTACTTCACTTGCT+AGG | 0.430680 | 2.2:+68357103 | MS.gene01479:CDS |
| TCTAAAGTATTCAACAATAA+GGG | 0.439227 | 2.2:+68356922 | MS.gene01479:CDS |
| ATTAATCAGTTGTGGAGTTA+GGG | 0.447067 | 2.2:+68358039 | MS.gene01479:CDS |
| GCCAAGCCATTAAACTCATC+AGG | 0.456967 | 2.2:-68358082 | None:intergenic |
| GAATGTTTAAAAGCACCTAA+AGG | 0.458705 | 2.2:-68356874 | None:intergenic |
| GATTGCTGTCACGAATTGTT+CGG | 0.459234 | 2.2:-68356780 | None:intergenic |
| GGAGATTGTTCCTGGTTGCT+TGG | 0.459797 | 2.2:+68357053 | MS.gene01479:CDS |
| TTGGTTCTTGAATCTGGAAC+TGG | 0.463211 | 2.2:+68357072 | MS.gene01479:CDS |
| GCACTTCAGTCCTGCTTCAC+AGG | 0.472308 | 2.2:+68358232 | MS.gene01479:CDS |
| TTGAATACTTTAGAGCCAAA+AGG | 0.478439 | 2.2:-68356913 | None:intergenic |
| AATGTATAAACATGTCCGTT+TGG | 0.481340 | 2.2:-68357135 | None:intergenic |
| GAAAGATATAAAGACATTTG+AGG | 0.513281 | 2.2:+68360143 | MS.gene01479:intron |
| ATTTGATTTCCATGAACAAA+GGG | 0.526401 | 2.2:+68357155 | MS.gene01479:CDS |
| GCTAGGGCAGTTGCGCCAAA+CGG | 0.528305 | 2.2:+68357120 | MS.gene01479:CDS |
| CATTTGATTTCCATGAACAA+AGG | 0.531378 | 2.2:+68357154 | MS.gene01479:CDS |
| GCGAAAATGCTTAAACAAGA+TGG | 0.531846 | 2.2:+68358157 | MS.gene01479:CDS |
| CAATCCTACTTCTTCTGTCA+TGG | 0.536704 | 2.2:+68360281 | MS.gene01479:CDS |
| CCTAAAAGTACCTGTGAAGC+AGG | 0.543977 | 2.2:-68358242 | None:intergenic |
| GTTAGGGACATTCAGGGTGA+GGG | 0.545604 | 2.2:+68358055 | MS.gene01479:CDS |
| TTTGACTACTTCACTTGCTA+GGG | 0.548143 | 2.2:+68357104 | MS.gene01479:CDS |
| GAAAGCTGTAACAGTGTCTG+AGG | 0.556493 | 2.2:+68356834 | MS.gene01479:CDS |
| TGTGGAGTTAGGGACATTCA+GGG | 0.558563 | 2.2:+68358049 | MS.gene01479:CDS |
| TTAAGCAGATTAATCAGTTG+TGG | 0.568079 | 2.2:+68358031 | MS.gene01479:CDS |
| GGACTCTAGTGTTAAATCAC+AGG | 0.580184 | 2.2:+68356983 | MS.gene01479:CDS |
| AGAGTCCATAATTCTGGTGT+GGG | 0.584035 | 2.2:-68356967 | None:intergenic |
| TAGAGTCCATAATTCTGGTG+TGG | 0.585946 | 2.2:-68356968 | None:intergenic |
| AGTTAGGGACATTCAGGGTG+AGG | 0.591437 | 2.2:+68358054 | MS.gene01479:CDS |
| GGAATGGCTAACCAAGGTTG+AGG | 0.592393 | 2.2:-68358127 | None:intergenic |
| GTTATTGTTTACGTAAAACA+TGG | 0.594494 | 2.2:+68356805 | MS.gene01479:CDS |
| CTAGCCATGACAGAAGAAGT+AGG | 0.599460 | 2.2:-68360285 | None:intergenic |
| AACAAAGGGCAGCATCTGCT+AGG | 0.601675 | 2.2:+68357169 | MS.gene01479:CDS |
| AAGAGAAGACAGTGTTCAGA+TGG | 0.602416 | 2.2:+68360243 | MS.gene01479:CDS |
| GAACACTGTCTTCTCTTGCA+AGG | 0.615282 | 2.2:-68360237 | None:intergenic |
| GATTCAAGAACCAAGCAACC+AGG | 0.619604 | 2.2:-68357063 | None:intergenic |
| TGACCTCTAGCCTCATCACA+AGG | 0.640370 | 2.2:-68360309 | None:intergenic |
| CATGGCTAGACCTTGTGATG+AGG | 0.646852 | 2.2:+68360299 | MS.gene01479:CDS |
| AAAGCTGTAACAGTGTCTGA+GGG | 0.675726 | 2.2:+68356835 | MS.gene01479:CDS |
| AGACCTTGTGATGAGGCTAG+AGG | 0.676272 | 2.2:+68360306 | MS.gene01479:CDS |
| AGCTTTCATGGAGATGACAG+TGG | 0.682269 | 2.2:+68360207 | MS.gene01479:CDS |
| GCTGAAGGAATGGCTAACCA+AGG | 0.691556 | 2.2:-68358133 | None:intergenic |
| GATGAGGCTAGAGGTCACAC+AGG | 0.703330 | 2.2:+68360315 | MS.gene01479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAAATACAATTAATTT+AGG | + | chr2.2:68360082-68360101 | MS.gene01479:intron | 10.0% |
| !! | TGATTTAAATTTCTTATATA+TGG | + | chr2.2:68357846-68357865 | MS.gene01479:intron | 10.0% |
| !!! | TTTTTTAGAAACTTAATATA+TGG | + | chr2.2:68357365-68357384 | MS.gene01479:intron | 10.0% |
| !! | AAAATCAGAAAATATATATG+AGG | - | chr2.2:68358484-68358503 | None:intergenic | 15.0% |
| !! | AGAATAAATAGAATAGAATA+TGG | - | chr2.2:68360049-68360068 | None:intergenic | 15.0% |
| !! | GAATAAATAGAATAGAATAT+GGG | - | chr2.2:68360048-68360067 | None:intergenic | 15.0% |
| !! | TCGAAAAAATATATATTCAT+TGG | + | chr2.2:68358619-68358638 | MS.gene01479:intron | 15.0% |
| !!! | TAATTTGTTAATTATTTGCA+GGG | + | chr2.2:68357988-68358007 | MS.gene01479:intron | 15.0% |
| !!! | TAGTTTTGTTATTATGTATT+TGG | + | chr2.2:68357032-68357051 | MS.gene01479:CDS | 15.0% |
| !!! | TTAATTTGTTAATTATTTGC+AGG | + | chr2.2:68357987-68358006 | MS.gene01479:intron | 15.0% |
| !! | AAGTGCATTTAAAAATAGAT+TGG | - | chr2.2:68358429-68358448 | None:intergenic | 20.0% |
| !! | AATTCTTCTAATCAATTCTT+TGG | + | chr2.2:68359043-68359062 | MS.gene01479:intron | 20.0% |
| !! | ACTGTATTAAGAGATATAAA+AGG | + | chr2.2:68359952-68359971 | MS.gene01479:intron | 20.0% |
| !! | ATTCTTCTAATCAATTCTTT+GGG | + | chr2.2:68359044-68359063 | MS.gene01479:intron | 20.0% |
| !! | CATAAGCAAAATATAAACAT+TGG | - | chr2.2:68360122-68360141 | None:intergenic | 20.0% |
| !! | CTGTATTAAGAGATATAAAA+GGG | + | chr2.2:68359953-68359972 | MS.gene01479:intron | 20.0% |
| !! | TAACAAAATTGTGTAACAAA+GGG | + | chr2.2:68359918-68359937 | MS.gene01479:intron | 20.0% |
| !! | TACTTCATTATTCAAAATCT+TGG | + | chr2.2:68357753-68357772 | MS.gene01479:intron | 20.0% |
| !! | TATGTTATTAGAAAGTAAAC+AGG | - | chr2.2:68358269-68358288 | None:intergenic | 20.0% |
| !! | TGTATTAAGAGATATAAAAG+GGG | + | chr2.2:68359954-68359973 | MS.gene01479:intron | 20.0% |
| !! | TTAACTATCCTAATATTTGA+TGG | - | chr2.2:68359480-68359499 | None:intergenic | 20.0% |
| !!! | TCTAAAGTATTCAACAATAA+GGG | + | chr2.2:68356922-68356941 | MS.gene01479:CDS | 20.0% |
| !!! | TTCATTTTTACTTTGTATGA+AGG | + | chr2.2:68358289-68358308 | MS.gene01479:intron | 20.0% |
| ! | AAACATTGGAATATGTTAGT+AGG | - | chr2.2:68360108-68360127 | None:intergenic | 25.0% |
| ! | AAACTACAGAGAATACATTT+CGG | + | chr2.2:68358373-68358392 | MS.gene01479:intron | 25.0% |
| ! | AACAAAATTGTGTAACAAAG+GGG | + | chr2.2:68359919-68359938 | MS.gene01479:intron | 25.0% |
| ! | AGCAATAAGAGATAGAAAAA+GGG | + | chr2.2:68358735-68358754 | MS.gene01479:intron | 25.0% |
| ! | ATAGAATAGAATATGGGAAT+CGG | - | chr2.2:68360042-68360061 | None:intergenic | 25.0% |
| ! | CTAACAAAATTGTGTAACAA+AGG | + | chr2.2:68359917-68359936 | MS.gene01479:intron | 25.0% |
| ! | GAAAGATATAAAGACATTTG+AGG | + | chr2.2:68360143-68360162 | MS.gene01479:intron | 25.0% |
| ! | GAACAATTTGAATTATAAGC+TGG | - | chr2.2:68359192-68359211 | None:intergenic | 25.0% |
| ! | GTTATTGTTTACGTAAAACA+TGG | + | chr2.2:68356805-68356824 | MS.gene01479:CDS | 25.0% |
| ! | TCTCTTGATCATAACTAAAA+AGG | - | chr2.2:68358343-68358362 | None:intergenic | 25.0% |
| ! | TGAATTTATTGATGAAACTC+TGG | + | chr2.2:68358653-68358672 | MS.gene01479:intron | 25.0% |
| ! | TTCCAAAATAATTTCCTCTA+TGG | + | chr2.2:68359562-68359581 | MS.gene01479:intron | 25.0% |
| ! | TTTAAACATTCTGATTGGAT+TGG | + | chr2.2:68356886-68356905 | MS.gene01479:CDS | 25.0% |
| !! | ATTTGATTTCCATGAACAAA+GGG | + | chr2.2:68357155-68357174 | MS.gene01479:CDS | 25.0% |
| !! | CTTAAAGCAATTTTTCTCAA+GGG | - | chr2.2:68359141-68359160 | None:intergenic | 25.0% |
| !! | TCTTAAAGCAATTTTTCTCA+AGG | - | chr2.2:68359142-68359161 | None:intergenic | 25.0% |
| !! | TTCCATAGAGGAAATTATTT+TGG | - | chr2.2:68359567-68359586 | None:intergenic | 25.0% |
| !! | TTCTTTTCTTCCTATGATAA+GGG | + | chr2.2:68357923-68357942 | MS.gene01479:intron | 25.0% |
| !! | TTTCTTTTCTTCCTATGATA+AGG | + | chr2.2:68357922-68357941 | MS.gene01479:intron | 25.0% |
| !! | TTTTACTAAATAGCGTATCA+CGG | - | chr2.2:68357302-68357321 | None:intergenic | 25.0% |
| !!! | AATGTTTAAAAGCACCTAAA+GGG | - | chr2.2:68356876-68356895 | None:intergenic | 25.0% |
| !!! | AATTATTTTGGAAATGGAGA+TGG | - | chr2.2:68359555-68359574 | None:intergenic | 25.0% |
| !!! | AGAGGAAATTATTTTGGAAA+TGG | - | chr2.2:68359561-68359580 | None:intergenic | 25.0% |
| !!! | CTCTAAAGTATTCAACAATA+AGG | + | chr2.2:68356921-68356940 | MS.gene01479:CDS | 25.0% |
| !!! | TTTTTCGAACAAGCTAAAAT+GGG | - | chr2.2:68358607-68358626 | None:intergenic | 25.0% |
| !!! | TTTTTTCGAACAAGCTAAAA+TGG | - | chr2.2:68358608-68358627 | None:intergenic | 25.0% |
| AATCAGAGTTGTGTTACAAA+AGG | + | chr2.2:68358687-68358706 | MS.gene01479:intron | 30.0% | |
| AATGTATAAACATGTCCGTT+TGG | - | chr2.2:68357138-68357157 | None:intergenic | 30.0% | |
| AGTACTGTTATGATGAATGA+AGG | - | chr2.2:68359008-68359027 | None:intergenic | 30.0% | |
| ATCAGAGTTGTGTTACAAAA+GGG | + | chr2.2:68358688-68358707 | MS.gene01479:intron | 30.0% | |
| ATTAATCAGTTGTGGAGTTA+GGG | + | chr2.2:68358039-68358058 | MS.gene01479:CDS | 30.0% | |
| ATTACCAAGTCTCAAACAAA+AGG | - | chr2.2:68359235-68359254 | None:intergenic | 30.0% | |
| ATTCATTGCAATTCTGATCT+TGG | - | chr2.2:68359789-68359808 | None:intergenic | 30.0% | |
| ATTTACTGGATAATTGCTTG+TGG | + | chr2.2:68359864-68359883 | MS.gene01479:intron | 30.0% | |
| GAAACTTAATATATGGTCCA+AGG | + | chr2.2:68357372-68357391 | MS.gene01479:intron | 30.0% | |
| GAATTCTATCAGAATCAGTT+TGG | + | chr2.2:68358571-68358590 | MS.gene01479:intron | 30.0% | |
| GAGCAATAAGAGATAGAAAA+AGG | + | chr2.2:68358734-68358753 | MS.gene01479:intron | 30.0% | |
| GGTAGTAATTAATGGTTACA+AGG | - | chr2.2:68359768-68359787 | None:intergenic | 30.0% | |
| GTACTGTTATGATGAATGAA+GGG | - | chr2.2:68359007-68359026 | None:intergenic | 30.0% | |
| TACTGTTATGATGAATGAAG+GGG | - | chr2.2:68359006-68359025 | None:intergenic | 30.0% | |
| TAGAATAGAATATGGGAATC+GGG | - | chr2.2:68360041-68360060 | None:intergenic | 30.0% | |
| TATCCTAATATTTGATGGAG+AGG | - | chr2.2:68359475-68359494 | None:intergenic | 30.0% | |
| TGGATTTATTGACGAAACTT+TGG | + | chr2.2:68359884-68359903 | MS.gene01479:intron | 30.0% | |
| TTAAGCAGATTAATCAGTTG+TGG | + | chr2.2:68358031-68358050 | MS.gene01479:CDS | 30.0% | |
| TTACCAAGTCTCAAACAAAA+GGG | - | chr2.2:68359234-68359253 | None:intergenic | 30.0% | |
| TTACTTTGTATGAAGGTAGA+TGG | + | chr2.2:68358296-68358315 | MS.gene01479:intron | 30.0% | |
| TTCTACATAACCCTTATCAT+AGG | - | chr2.2:68357936-68357955 | None:intergenic | 30.0% | |
| TTGTCAAATAGCAGTTACAT+AGG | + | chr2.2:68357325-68357344 | MS.gene01479:intron | 30.0% | |
| ! | AATTTCTGCCATTTCTGTTT+GGG | + | chr2.2:68359498-68359517 | MS.gene01479:intron | 30.0% |
| ! | AGTAAAACTGATTCTAACAC+TGG | - | chr2.2:68359840-68359859 | None:intergenic | 30.0% |
| ! | CAGTTTTACTCTTGATTTAC+TGG | + | chr2.2:68359850-68359869 | MS.gene01479:intron | 30.0% |
| ! | CATTACAAGGTATCAATAGT+GGG | - | chr2.2:68359349-68359368 | None:intergenic | 30.0% |
| ! | CATTTGATTTCCATGAACAA+AGG | + | chr2.2:68357154-68357173 | MS.gene01479:CDS | 30.0% |
| ! | CTGATCTTGGTAGTAATTAA+TGG | - | chr2.2:68359776-68359795 | None:intergenic | 30.0% |
| ! | GTGCTTTTAAACATTCTGAT+TGG | + | chr2.2:68356881-68356900 | MS.gene01479:CDS | 30.0% |
| ! | TAATTTCTGCCATTTCTGTT+TGG | + | chr2.2:68359497-68359516 | MS.gene01479:intron | 30.0% |
| !! | AACTTTATTCTGGCTTCAAT+TGG | - | chr2.2:68357444-68357463 | None:intergenic | 30.0% |
| !! | AAGAGCGTTTAGAAGATTAA+TGG | - | chr2.2:68358845-68358864 | None:intergenic | 30.0% |
| !! | ACTTTATTCTGGCTTCAATT+GGG | - | chr2.2:68357443-68357462 | None:intergenic | 30.0% |
| !! | AGTGGAACGATATTTTGAAT+TGG | - | chr2.2:68359430-68359449 | None:intergenic | 30.0% |
| !! | GAACGATATTTTGAATTGGA+GGG | - | chr2.2:68359426-68359445 | None:intergenic | 30.0% |
| !! | GAATGTTTAAAAGCACCTAA+AGG | - | chr2.2:68356877-68356896 | None:intergenic | 30.0% |
| !! | TAAAGTGCTAACTTGTTGAT+TGG | + | chr2.2:68358933-68358952 | MS.gene01479:intron | 30.0% |
| !! | TTGAATACTTTAGAGCCAAA+AGG | - | chr2.2:68356916-68356935 | None:intergenic | 30.0% |
| AACACTAGAGTCCATAATTC+TGG | - | chr2.2:68356976-68356995 | None:intergenic | 35.0% | |
| AATTGCAATGAATAACGACC+TGG | + | chr2.2:68359796-68359815 | MS.gene01479:intron | 35.0% | |
| ACAGTGGATAGCAAAAAATG+TGG | - | chr2.2:68357619-68357638 | None:intergenic | 35.0% | |
| ACTGTTATGATGAATGAAGG+GGG | - | chr2.2:68359005-68359024 | None:intergenic | 35.0% | |
| AGAAAATGCACACAAAGATG+AGG | - | chr2.2:68358507-68358526 | None:intergenic | 35.0% | |
| AGAATAGAATATGGGAATCG+GGG | - | chr2.2:68360040-68360059 | None:intergenic | 35.0% | |
| AGAGAAGTTTGAATCACAGA+AGG | - | chr2.2:68359647-68359666 | None:intergenic | 35.0% | |
| AGGACGACATGATCATTTAT+GGG | - | chr2.2:68358868-68358887 | None:intergenic | 35.0% | |
| ATGTATTTGGAGATTGTTCC+TGG | + | chr2.2:68357045-68357064 | MS.gene01479:CDS | 35.0% | |
| CATCCTCTCCATCAAATATT+AGG | + | chr2.2:68359469-68359488 | MS.gene01479:intron | 35.0% | |
| CCACTATTGATACCTTGTAA+TGG | + | chr2.2:68359347-68359366 | MS.gene01479:intron | 35.0% | |
| GAACATGATCAATTCCATAG+AGG | - | chr2.2:68359579-68359598 | None:intergenic | 35.0% | |
| GATTAATCAGTTGTGGAGTT+AGG | + | chr2.2:68358038-68358057 | MS.gene01479:CDS | 35.0% | |
| GCGAAAATGCTTAAACAAGA+TGG | + | chr2.2:68358157-68358176 | MS.gene01479:CDS | 35.0% | |
| GGATTTCCTGATGAGTTTAA+TGG | + | chr2.2:68358076-68358095 | MS.gene01479:CDS | 35.0% | |
| TACCAAGTCTCAAACAAAAG+GGG | - | chr2.2:68359233-68359252 | None:intergenic | 35.0% | |
| TATTTCCTTAGTCACACGTA+AGG | + | chr2.2:68357815-68357834 | MS.gene01479:intron | 35.0% | |
| TGTCAGCATAAAGTTCTACA+CGG | - | chr2.2:68357650-68357669 | None:intergenic | 35.0% | |
| TTCCATTGAAGAATCTAGTG+CGG | - | chr2.2:68358892-68358911 | None:intergenic | 35.0% | |
| TTGTGCGTGAAATTCTACTT+TGG | - | chr2.2:68359322-68359341 | None:intergenic | 35.0% | |
| TTTGAATCACAGAAGGATTG+AGG | - | chr2.2:68359640-68359659 | None:intergenic | 35.0% | |
| ! | AATTTTTCTCAAGGGACTGA+AGG | - | chr2.2:68359133-68359152 | None:intergenic | 35.0% |
| ! | ATTTCTGCCATTTCTGTTTG+GGG | + | chr2.2:68359499-68359518 | MS.gene01479:intron | 35.0% |
| ! | CCATTACAAGGTATCAATAG+TGG | - | chr2.2:68359350-68359369 | None:intergenic | 35.0% |
| ! | TTCTACTTTGGAGGATTTGA+AGG | - | chr2.2:68359310-68359329 | None:intergenic | 35.0% |
| ! | TTTGACTACTTCACTTGCTA+GGG | + | chr2.2:68357104-68357123 | MS.gene01479:CDS | 35.0% |
| !! | AGACTTGGTAATGATTCACA+AGG | + | chr2.2:68359243-68359262 | MS.gene01479:intron | 35.0% |
| !! | CTTGGCTGATTCTGTATTTT+TGG | + | chr2.2:68358099-68358118 | MS.gene01479:CDS | 35.0% |
| !! | GACTTGGTAATGATTCACAA+GGG | + | chr2.2:68359244-68359263 | MS.gene01479:intron | 35.0% |
| !! | GGAACGATATTTTGAATTGG+AGG | - | chr2.2:68359427-68359446 | None:intergenic | 35.0% |
| !! | TATTTTGAATTGGAGGGTGT+AGG | - | chr2.2:68359420-68359439 | None:intergenic | 35.0% |
| !! | TCAGTTTTTCAGAACCCTTT+AGG | + | chr2.2:68356859-68356878 | MS.gene01479:CDS | 35.0% |
| !!! | TTTTTAGAACGTGCCTATGA+AGG | - | chr2.2:68359721-68359740 | None:intergenic | 35.0% |
| AAACTCCTTACCAGAGATGA+TGG | - | chr2.2:68359076-68359095 | None:intergenic | 40.0% | |
| AAAGCTGTAACAGTGTCTGA+GGG | + | chr2.2:68356835-68356854 | MS.gene01479:CDS | 40.0% | |
| AACGCGAGAAAAATCAAGGT+TGG | - | chr2.2:68358815-68358834 | None:intergenic | 40.0% | |
| AAGAGAAGACAGTGTTCAGA+TGG | + | chr2.2:68360243-68360262 | MS.gene01479:CDS | 40.0% | |
| AATGGTTACAAGGTGCAGAA+TGG | - | chr2.2:68359758-68359777 | None:intergenic | 40.0% | |
| AGAGTCCATAATTCTGGTGT+GGG | - | chr2.2:68356970-68356989 | None:intergenic | 40.0% | |
| AGCACTTTAGACAAAGTCCT+TGG | - | chr2.2:68358922-68358941 | None:intergenic | 40.0% | |
| AGCCAGAATAAAGTTCTGTG+TGG | + | chr2.2:68357449-68357468 | MS.gene01479:intron | 40.0% | |
| ATAGTCCATCATCTCTGGTA+AGG | + | chr2.2:68359068-68359087 | MS.gene01479:intron | 40.0% | |
| ATCTCTGGTAAGGAGTTTAC+TGG | + | chr2.2:68359078-68359097 | MS.gene01479:intron | 40.0% | |
| CAATCCTACTTCTTCTGTCA+TGG | + | chr2.2:68360281-68360300 | MS.gene01479:CDS | 40.0% | |
| CAATCTCTATTTCCTCTTCC+TGG | - | chr2.2:68357202-68357221 | None:intergenic | 40.0% | |
| CGTTGTACTTGTTCGATACA+TGG | - | chr2.2:68358202-68358221 | None:intergenic | 40.0% | |
| CTGAAACGCGAGAAAAATCA+AGG | - | chr2.2:68358819-68358838 | None:intergenic | 40.0% | |
| CTTTGACTACTTCACTTGCT+AGG | + | chr2.2:68357103-68357122 | MS.gene01479:CDS | 40.0% | |
| GAATAGAATATGGGAATCGG+GGG | - | chr2.2:68360039-68360058 | None:intergenic | 40.0% | |
| GAGGACGACATGATCATTTA+TGG | - | chr2.2:68358869-68358888 | None:intergenic | 40.0% | |
| GATTGCTGTCACGAATTGTT+CGG | - | chr2.2:68356783-68356802 | None:intergenic | 40.0% | |
| GCACTTTAGACAAAGTCCTT+GGG | - | chr2.2:68358921-68358940 | None:intergenic | 40.0% | |
| GGACTCTAGTGTTAAATCAC+AGG | + | chr2.2:68356983-68357002 | MS.gene01479:CDS | 40.0% | |
| GTACGAGAGGATTTCAAATC+TGG | - | chr2.2:68359525-68359544 | None:intergenic | 40.0% | |
| GTCCACACAGAACTTTATTC+TGG | - | chr2.2:68357454-68357473 | None:intergenic | 40.0% | |
| GTGAAGACGAAAAGCTTTCA+TGG | + | chr2.2:68360195-68360214 | MS.gene01479:CDS | 40.0% | |
| GTGCCAACAATTTCTGTGTT+GGG | - | chr2.2:68357480-68357499 | None:intergenic | 40.0% | |
| TAGAGTCCATAATTCTGGTG+TGG | - | chr2.2:68356971-68356990 | None:intergenic | 40.0% | |
| TAGCCCAACACAGAAATTGT+TGG | + | chr2.2:68357474-68357493 | MS.gene01479:intron | 40.0% | |
| TATCAGAAAGCAGTTGATCC+AGG | - | chr2.2:68359817-68359836 | None:intergenic | 40.0% | |
| TATGGCCATGTATCCTTCAT+AGG | + | chr2.2:68359705-68359724 | MS.gene01479:intron | 40.0% | |
| TCCAAGGATCGATTAATCCA+GGG | + | chr2.2:68357388-68357407 | MS.gene01479:intron | 40.0% | |
| TCCATTGAAGAATCTAGTGC+GGG | - | chr2.2:68358891-68358910 | None:intergenic | 40.0% | |
| TCCTGATGAGTTTAATGGCT+TGG | + | chr2.2:68358081-68358100 | MS.gene01479:CDS | 40.0% | |
| TCTCTGGTAAGGAGTTTACT+GGG | + | chr2.2:68359079-68359098 | MS.gene01479:intron | 40.0% | |
| TGCGTGAAATTCTACTTTGG+AGG | - | chr2.2:68359319-68359338 | None:intergenic | 40.0% | |
| TTCAATGGAACTGTTTCCCA+AGG | + | chr2.2:68358902-68358921 | MS.gene01479:intron | 40.0% | |
| ! | AAGGTTGGTTGAGAGAGAAT+AGG | - | chr2.2:68358800-68358819 | None:intergenic | 40.0% |
| ! | ACTGAAAATAACTGCCGACT+AGG | + | chr2.2:68358763-68358782 | MS.gene01479:intron | 40.0% |
| ! | CTCCTGATTTTCCTTCTGTA+TGG | + | chr2.2:68359687-68359706 | MS.gene01479:intron | 40.0% |
| ! | TTAAGCATTTTCGCAGCTGA+AGG | - | chr2.2:68358151-68358170 | None:intergenic | 40.0% |
| ! | TTGGTTCTTGAATCTGGAAC+TGG | + | chr2.2:68357072-68357091 | MS.gene01479:CDS | 40.0% |
| !! | AGGGACGATTTTGAGAGAAT+AGG | + | chr2.2:68358007-68358026 | MS.gene01479:intron | 40.0% |
| !! | GATTGGATTGGAAAGCCTTT+TGG | + | chr2.2:68356898-68356917 | MS.gene01479:CDS | 40.0% |
| !! | TTCACAAGGGTTCTGAAGTA+TGG | + | chr2.2:68359257-68359276 | MS.gene01479:intron | 40.0% |
| !!! | GCGGGCAGTTTTTTTTTCTT+CGG | - | chr2.2:68359985-68360004 | None:intergenic | 40.0% |
| AACTAACAGAACTGCGACGT+GGG | - | chr2.2:68358961-68358980 | None:intergenic | 45.0% | |
| AATCTGGCCCCAAACAGAAA+TGG | - | chr2.2:68359509-68359528 | None:intergenic | 45.0% | |
| ACACAGAAATTGTTGGCACC+TGG | + | chr2.2:68357481-68357500 | MS.gene01479:intron | 45.0% | |
| ACAGAAATTGTTGGCACCTG+GGG | + | chr2.2:68357483-68357502 | MS.gene01479:intron | 45.0% | |
| ACGTGCCTATGAAGGATACA+TGG | - | chr2.2:68359713-68359732 | None:intergenic | 45.0% | |
| AGCTTTCATGGAGATGACAG+TGG | + | chr2.2:68360207-68360226 | MS.gene01479:CDS | 45.0% | |
| AGGATACATGGCCATACAGA+AGG | - | chr2.2:68359701-68359720 | None:intergenic | 45.0% | |
| AGGCTCTCTTAACTCCTAGT+CGG | - | chr2.2:68358780-68358799 | None:intergenic | 45.0% | |
| ATAAGCTGGACCACTCGTAA+GGG | - | chr2.2:68359178-68359197 | None:intergenic | 45.0% | |
| ATTGAAGAATCTAGTGCGGG+AGG | - | chr2.2:68358888-68358907 | None:intergenic | 45.0% | |
| CAAGGGACTGAAGGATGTAA+TGG | - | chr2.2:68359124-68359143 | None:intergenic | 45.0% | |
| CACAGAAATTGTTGGCACCT+GGG | + | chr2.2:68357482-68357501 | MS.gene01479:intron | 45.0% | |
| CAGAAGGATTGAGGAATTGC+TGG | - | chr2.2:68359631-68359650 | None:intergenic | 45.0% | |
| CATCTGCTAGGTAACAAACC+AGG | + | chr2.2:68357181-68357200 | MS.gene01479:intron | 45.0% | |
| CTACGAGTATGCTCTTCTCT+AGG | - | chr2.2:68357523-68357542 | None:intergenic | 45.0% | |
| CTAGCCATGACAGAAGAAGT+AGG | - | chr2.2:68360288-68360307 | None:intergenic | 45.0% | |
| CTAGGTAACAAACCAGGAAG+AGG | + | chr2.2:68357187-68357206 | MS.gene01479:intron | 45.0% | |
| GAAAGCTGTAACAGTGTCTG+AGG | + | chr2.2:68356834-68356853 | MS.gene01479:CDS | 45.0% | |
| GAACACTGTCTTCTCTTGCA+AGG | - | chr2.2:68360240-68360259 | None:intergenic | 45.0% | |
| GAACTCCTTACGTGTGACTA+AGG | - | chr2.2:68357823-68357842 | None:intergenic | 45.0% | |
| GAATTGCTGGAAACAGTCAG+AGG | - | chr2.2:68359618-68359637 | None:intergenic | 45.0% | |
| GATTCAAGAACCAAGCAACC+AGG | - | chr2.2:68357066-68357085 | None:intergenic | 45.0% | |
| GCAGCAATCGTACGAAGATT+TGG | - | chr2.2:68359288-68359307 | None:intergenic | 45.0% | |
| GCCAAGCCATTAAACTCATC+AGG | - | chr2.2:68358085-68358104 | None:intergenic | 45.0% | |
| GGCCATACAGAAGGAAAATC+AGG | - | chr2.2:68359692-68359711 | None:intergenic | 45.0% | |
| GGTGCCAACAATTTCTGTGT+TGG | - | chr2.2:68357481-68357500 | None:intergenic | 45.0% | |
| GTCCAAGGATCGATTAATCC+AGG | + | chr2.2:68357387-68357406 | MS.gene01479:intron | 45.0% | |
| GTTTGGTTGGACAAGTAGAG+TGG | - | chr2.2:68359448-68359467 | None:intergenic | 45.0% | |
| TAAGATTGCCATGGAAGGCA+AGG | - | chr2.2:68359373-68359392 | None:intergenic | 45.0% | |
| TAGCTCCCACACCAGAATTA+TGG | + | chr2.2:68356962-68356981 | MS.gene01479:CDS | 45.0% | |
| TATAAGCTGGACCACTCGTA+AGG | - | chr2.2:68359179-68359198 | None:intergenic | 45.0% | |
| TCCCGCACTAGATTCTTCAA+TGG | + | chr2.2:68358887-68358906 | MS.gene01479:intron | 45.0% | |
| TCCCTGGATTAATCGATCCT+TGG | - | chr2.2:68357392-68357411 | None:intergenic | 45.0% | |
| TCGCAGTTCTGTTAGTTGGA+TGG | + | chr2.2:68358964-68358983 | MS.gene01479:intron | 45.0% | |
| TCTCAAACAAAAGGGGACTG+TGG | - | chr2.2:68359226-68359245 | None:intergenic | 45.0% | |
| TGTGGAGTTAGGGACATTCA+GGG | + | chr2.2:68358049-68358068 | MS.gene01479:CDS | 45.0% | |
| TTGGGCTCTCTAACTCTTAG+CGG | - | chr2.2:68360004-68360023 | None:intergenic | 45.0% | |
| TTGTGGAGTTAGGGACATTC+AGG | + | chr2.2:68358048-68358067 | MS.gene01479:CDS | 45.0% | |
| TTTGATGGAGAGGATGCGTT+TGG | - | chr2.2:68359465-68359484 | None:intergenic | 45.0% | |
| ! | CATTTTCGCAGCTGAAGGAA+TGG | - | chr2.2:68358146-68358165 | None:intergenic | 45.0% |
| ! | CCTGCTTCACAGGTACTTTT+AGG | + | chr2.2:68358242-68358261 | MS.gene01479:intron | 45.0% |
| ! | CTAGAGAAGAGCATACTCGT+AGG | + | chr2.2:68357521-68357540 | MS.gene01479:intron | 45.0% |
| ! | CTTGAATCTGGAACTGGTAG+TGG | + | chr2.2:68357078-68357097 | MS.gene01479:CDS | 45.0% |
| ! | GGTTGCTTGGTTCTTGAATC+TGG | + | chr2.2:68357066-68357085 | MS.gene01479:CDS | 45.0% |
| ! | TAGCGGCTTGAATTTTCTCG+TGG | + | chr2.2:68359391-68359410 | MS.gene01479:intron | 45.0% |
| ! | TTTTGGATCTGCCTCAACCT+TGG | + | chr2.2:68358116-68358135 | MS.gene01479:CDS | 45.0% |
| !! | CAAGGGTTCTGAAGTATGGA+CGG | + | chr2.2:68359261-68359280 | MS.gene01479:intron | 45.0% |
| !! | CCTAAAAGTACCTGTGAAGC+AGG | - | chr2.2:68358245-68358264 | None:intergenic | 45.0% |
| !! | GTCCCCTTTTGTTTGAGACT+TGG | + | chr2.2:68359228-68359247 | MS.gene01479:intron | 45.0% |
| !!! | CGGGGGATATCTGGTTTTTT+GGG | - | chr2.2:68360022-68360041 | None:intergenic | 45.0% |
| !!! | TCGGGGGATATCTGGTTTTT+TGG | - | chr2.2:68360023-68360042 | None:intergenic | 45.0% |
| AACAAAGGGCAGCATCTGCT+AGG | + | chr2.2:68357169-68357188 | MS.gene01479:CDS | 50.0% | |
| AGACCTTGTGATGAGGCTAG+AGG | + | chr2.2:68360306-68360325 | MS.gene01479:CDS | 50.0% | |
| AGTTAGGGACATTCAGGGTG+AGG | + | chr2.2:68358054-68358073 | MS.gene01479:CDS | 50.0% | |
| ATGGAGAGGATGCGTTTGGT+TGG | - | chr2.2:68359461-68359480 | None:intergenic | 50.0% | |
| CAAACAAAAGGGGACTGTGG+AGG | - | chr2.2:68359223-68359242 | None:intergenic | 50.0% | |
| CAACTAACAGAACTGCGACG+TGG | - | chr2.2:68358962-68358981 | None:intergenic | 50.0% | |
| CAATTGGGTCCGACTACTAG+CGG | - | chr2.2:68357428-68357447 | None:intergenic | 50.0% | |
| CACGTCGCAGTTCTGTTAGT+TGG | + | chr2.2:68358960-68358979 | MS.gene01479:intron | 50.0% | |
| CAGATGCTGCCCTTTGTTCA+TGG | - | chr2.2:68357167-68357186 | None:intergenic | 50.0% | |
| CATGGCTAGACCTTGTGATG+AGG | + | chr2.2:68360299-68360318 | MS.gene01479:CDS | 50.0% | |
| CTACACGGTGTAGTCAACAG+TGG | - | chr2.2:68357635-68357654 | None:intergenic | 50.0% | |
| GCCTTCCATGGCAATCTTAG+CGG | + | chr2.2:68359374-68359393 | MS.gene01479:intron | 50.0% | |
| GCTGAAGGAATGGCTAACCA+AGG | - | chr2.2:68358136-68358155 | None:intergenic | 50.0% | |
| GGAATGGCTAACCAAGGTTG+AGG | - | chr2.2:68358130-68358149 | None:intergenic | 50.0% | |
| GGAGATTGTTCCTGGTTGCT+TGG | + | chr2.2:68357053-68357072 | MS.gene01479:CDS | 50.0% | |
| GGAGTTGCGACAACTTCTAG+AGG | - | chr2.2:68359671-68359690 | None:intergenic | 50.0% | |
| GGGACTGAAGGATGTAATGG+AGG | - | chr2.2:68359121-68359140 | None:intergenic | 50.0% | |
| GTTAGGGACATTCAGGGTGA+GGG | + | chr2.2:68358055-68358074 | MS.gene01479:CDS | 50.0% | |
| TATGGGAATCGGGGGATATC+TGG | - | chr2.2:68360031-68360050 | None:intergenic | 50.0% | |
| TCAAGCCGCTAAGATTGCCA+TGG | - | chr2.2:68359382-68359401 | None:intergenic | 50.0% | |
| TGACCTCTAGCCTCATCACA+AGG | - | chr2.2:68360312-68360331 | None:intergenic | 50.0% | |
| TGGAAGGCAAGGCCATTACA+AGG | - | chr2.2:68359362-68359381 | None:intergenic | 50.0% | |
| TGGGCATAGTCCATCATCTC+TGG | + | chr2.2:68359063-68359082 | MS.gene01479:intron | 50.0% | |
| TGGGCTCTCTAACTCTTAGC+GGG | - | chr2.2:68360003-68360022 | None:intergenic | 50.0% | |
| ! | TGTAATGGCCTTGCCTTCCA+TGG | + | chr2.2:68359362-68359381 | MS.gene01479:intron | 50.0% |
| AAGCCAACTCCTAGGGCCAT+GGG | + | chr2.2:68357562-68357581 | MS.gene01479:intron | 55.0% | |
| ACACCACCAAGCCAACTCCT+AGG | + | chr2.2:68357554-68357573 | MS.gene01479:intron | 55.0% | |
| CACCACCAAGCCAACTCCTA+GGG | + | chr2.2:68357555-68357574 | MS.gene01479:intron | 55.0% | |
| CTACGCTGTAGCGTAACCCA+TGG | - | chr2.2:68357581-68357600 | None:intergenic | 55.0% | |
| GATGAGGCTAGAGGTCACAC+AGG | + | chr2.2:68360315-68360334 | MS.gene01479:CDS | 55.0% | |
| GCACTTCAGTCCTGCTTCAC+AGG | + | chr2.2:68358232-68358251 | MS.gene01479:CDS | 55.0% | |
| GCCGCTAAGATTGCCATGGA+AGG | - | chr2.2:68359378-68359397 | None:intergenic | 55.0% | |
| GCTGGAAACAGTCAGAGGCA+TGG | - | chr2.2:68359613-68359632 | None:intergenic | 55.0% | |
| GGTCTCAGTTTCGAATCCCC+AGG | - | chr2.2:68357502-68357521 | None:intergenic | 55.0% | |
| TAACCCATGGCCCTAGGAGT+TGG | - | chr2.2:68357568-68357587 | None:intergenic | 55.0% | |
| TCTCGTTCAGCCCTTACGAG+TGG | + | chr2.2:68359165-68359184 | MS.gene01479:intron | 55.0% | |
| ! | AGATGGCAAGAGCGTACGAG+AGG | - | chr2.2:68359538-68359557 | None:intergenic | 55.0% |
| !! | AGGAGTTGGCTTGGTGGTGT+AGG | - | chr2.2:68357554-68357573 | None:intergenic | 55.0% |
| CAAGCCAACTCCTAGGGCCA+TGG | + | chr2.2:68357561-68357580 | MS.gene01479:intron | 60.0% | |
| CATGGCCCTAGGAGTTGGCT+TGG | - | chr2.2:68357563-68357582 | None:intergenic | 60.0% | |
| GCTAGGGCAGTTGCGCCAAA+CGG | + | chr2.2:68357120-68357139 | MS.gene01479:CDS | 60.0% | |
| GTAGCGTAACCCATGGCCCT+AGG | - | chr2.2:68357574-68357593 | None:intergenic | 60.0% | |
| TCCCACCGTCCGCTAGTAGT+CGG | + | chr2.2:68357416-68357435 | MS.gene01479:intron | 60.0% | |
| TGGGTCCGACTACTAGCGGA+CGG | - | chr2.2:68357424-68357443 | None:intergenic | 60.0% | |
| ! | CTACTAGCGGACGGTGGGAT+TGG | - | chr2.2:68357415-68357434 | None:intergenic | 60.0% |
| ! | TCCGACTACTAGCGGACGGT+GGG | - | chr2.2:68357420-68357439 | None:intergenic | 60.0% |
| ! | GTCCGACTACTAGCGGACGG+TGG | - | chr2.2:68357421-68357440 | None:intergenic | 65.0% |
| !! | GGCCCTAGGAGTTGGCTTGG+TGG | - | chr2.2:68357560-68357579 | None:intergenic | 65.0% |
| !! | CGGACGGTGGGATTGGTCCC+TGG | - | chr2.2:68357408-68357427 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 68356742 | 68360374 | 68356742 | ID=MS.gene01479 |
| chr2.2 | mRNA | 68356742 | 68360374 | 68356742 | ID=MS.gene01479.t1;Parent=MS.gene01479 |
| chr2.2 | exon | 68356742 | 68357190 | 68356742 | ID=MS.gene01479.t1.exon1;Parent=MS.gene01479.t1 |
| chr2.2 | CDS | 68356742 | 68357190 | 68356742 | ID=cds.MS.gene01479.t1;Parent=MS.gene01479.t1 |
| chr2.2 | exon | 68358009 | 68358253 | 68358009 | ID=MS.gene01479.t1.exon2;Parent=MS.gene01479.t1 |
| chr2.2 | CDS | 68358009 | 68358253 | 68358009 | ID=cds.MS.gene01479.t1;Parent=MS.gene01479.t1 |
| chr2.2 | exon | 68360148 | 68360374 | 68360148 | ID=MS.gene01479.t1.exon3;Parent=MS.gene01479.t1 |
| chr2.2 | CDS | 68360148 | 68360374 | 68360148 | ID=cds.MS.gene01479.t1;Parent=MS.gene01479.t1 |
| Gene Sequence |
| Protein sequence |