Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21881.t1 | XP_003610866.2 | 97.9 | 193 | 4 | 0 | 3 | 195 | 120 | 312 | 2.00E-70 | 275.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21881.t1 | Q5M882 | 38.0 | 100 | 58 | 2 | 96 | 191 | 105 | 204 | 1.7e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21881.t1 | G7K6I6 | 97.9 | 193 | 4 | 0 | 3 | 195 | 120 | 312 | 1.5e-70 | 275.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene21881 | 0.820136 | 8.05E-53 | -1.69E-46 |
| MS.gene049230 | MS.gene21881 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene21881 | 0.801913 | 7.19E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene21881 | 0.835157 | 1.98E-56 | -1.69E-46 |
| MS.gene049501 | MS.gene21881 | 0.801706 | 7.93E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene21881 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene21881 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene21881 | 0.843955 | 1.02E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene21881 | 0.841855 | 3.69E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene21881 | 0.824241 | 8.98E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene21881 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene21881 | 0.841807 | 3.80E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene21881 | -0.805224 | 1.48E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene21881 | 0.803733 | 3.03E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene21881 | 0.87614 | 1.77E-68 | -1.69E-46 |
| MS.gene050721 | MS.gene21881 | 0.87962 | 1.07E-69 | -1.69E-46 |
| MS.gene050724 | MS.gene21881 | 0.867011 | 1.87E-65 | -1.69E-46 |
| MS.gene050750 | MS.gene21881 | 0.819423 | 1.17E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene21881 | 0.824574 | 7.50E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene21881 | 0.812654 | 3.80E-51 | -1.69E-46 |
| MS.gene050824 | MS.gene21881 | 0.826663 | 2.40E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene21881 | 0.848078 | 7.71E-60 | -1.69E-46 |
| MS.gene050953 | MS.gene21881 | 0.819753 | 9.84E-53 | -1.69E-46 |
| MS.gene051349 | MS.gene21881 | 0.82732 | 1.67E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene21881 | 0.810717 | 1.00E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene21881 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene21881 | 0.828829 | 7.23E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene21881 | 0.800082 | 1.70E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene21881 | 0.815455 | 9.16E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene21881 | 0.804951 | 1.69E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene21881 | 0.824307 | 8.67E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene21881 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene21881 | 0.801391 | 9.21E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene21881 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene21881 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene052896 | MS.gene21881 | 0.811893 | 5.57E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene21881 | 0.802592 | 5.21E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene21881 | 0.808221 | 3.45E-50 | -1.69E-46 |
| MS.gene053184 | MS.gene21881 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene21881 | 0.802375 | 5.78E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene21881 | 0.816774 | 4.65E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene21881 | 0.800271 | 1.56E-48 | -1.69E-46 |
| MS.gene054405 | MS.gene21881 | 0.805184 | 1.51E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene21881 | 0.826668 | 2.39E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene21881 | 0.821523 | 3.86E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene21881 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene21881 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene21881 | 0.806878 | 6.64E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene21881 | 0.801738 | 7.82E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene21881 | 0.83663 | 8.36E-57 | -1.69E-46 |
| MS.gene055778 | MS.gene21881 | 0.802024 | 6.83E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene21881 | 0.822812 | 1.94E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene21881 | 0.800396 | 1.47E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene21881 | 0.842768 | 2.11E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene21881 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene21881 | 0.848196 | 7.15E-60 | -1.69E-46 |
| MS.gene057060 | MS.gene21881 | 0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene21881 | 0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene21881 | 0.815073 | 1.11E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene21881 | 0.807748 | 4.34E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene21881 | 0.813196 | 2.89E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene21881 | 0.810471 | 1.13E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene21881 | 0.80456 | 2.04E-49 | -1.69E-46 |
| MS.gene058792 | MS.gene21881 | 0.817432 | 3.31E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene21881 | 0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene21881 | 0.822555 | 2.22E-53 | -1.69E-46 |
| MS.gene059249 | MS.gene21881 | 0.822693 | 2.07E-53 | -1.69E-46 |
| MS.gene059317 | MS.gene21881 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene21881 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene059569 | MS.gene21881 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene059789 | MS.gene21881 | 0.818504 | 1.89E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene21881 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene21881 | 0.856705 | 2.68E-62 | -1.69E-46 |
| MS.gene06052 | MS.gene21881 | 0.801961 | 7.03E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene21881 | 0.874537 | 6.25E-68 | -1.69E-46 |
| MS.gene060586 | MS.gene21881 | 0.806989 | 6.29E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene21881 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene21881 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene21881 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene21881 | 0.809969 | 1.46E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene21881 | 0.820098 | 8.21E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene21881 | -0.828559 | 8.41E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21881 | MS.gene015759 | PPI |
| MS.gene05906 | MS.gene21881 | PPI |
| MS.gene21881 | MS.gene04750 | PPI |
| MS.gene21881 | MS.gene049112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21881.t1 | MTR_5g007880 | 97.927 | 193 | 4 | 0 | 3 | 195 | 120 | 312 | 3.03e-140 | 394 |
| MS.gene21881.t1 | MTR_5g007880 | 98.137 | 161 | 3 | 0 | 3 | 163 | 120 | 280 | 1.88e-115 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21881.t1 | AT2G43190 | 58.947 | 190 | 77 | 1 | 2 | 191 | 102 | 290 | 2.01e-76 | 231 |
| MS.gene21881.t1 | AT2G43190 | 58.947 | 190 | 77 | 1 | 2 | 191 | 102 | 290 | 2.01e-76 | 231 |
| MS.gene21881.t1 | AT2G43190 | 58.947 | 190 | 77 | 1 | 2 | 191 | 101 | 289 | 2.06e-76 | 231 |
| MS.gene21881.t1 | AT2G43190 | 58.947 | 190 | 77 | 1 | 2 | 191 | 101 | 289 | 2.06e-76 | 231 |
| MS.gene21881.t1 | AT2G43190 | 61.940 | 134 | 51 | 0 | 58 | 191 | 122 | 255 | 6.77e-56 | 177 |
Find 29 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGAAACTGCAGAAGCTTT+TGG | 0.202603 | 5.1:-2149886 | MS.gene21881:CDS |
| TGCCACCAGTTCCAGTAAAA+TGG | 0.225932 | 5.1:+2149917 | None:intergenic |
| ACTTACTTATGGAACTCTTT+AGG | 0.344380 | 5.1:+2151292 | None:intergenic |
| AAGAAGTTCATGCAATATTT+CGG | 0.347349 | 5.1:+2151513 | None:intergenic |
| TTGTACTACAAGTTGATTGC+TGG | 0.357928 | 5.1:-2148842 | MS.gene21881:CDS |
| AAACTAGATTCAAGAAAGGT+TGG | 0.424013 | 5.1:-2148798 | MS.gene21881:CDS |
| TGCTGGAAAGCCACTCTGCT+TGG | 0.452437 | 5.1:-2148825 | MS.gene21881:CDS |
| TTGTTCCAGGAATAATCAAT+TGG | 0.458394 | 5.1:-2150840 | MS.gene21881:intron |
| AAGTTGTTGCTTAAATCCAC+TGG | 0.460350 | 5.1:-2150974 | MS.gene21881:CDS |
| GCCACCAGTTCCAGTAAAAT+GGG | 0.464672 | 5.1:+2149918 | None:intergenic |
| AATTGCAGTTGTTCCGAAGA+AGG | 0.466042 | 5.1:-2148874 | MS.gene21881:intron |
| TTCTTCATCTTCTCAAACAA+GGG | 0.478707 | 5.1:-2151392 | MS.gene21881:CDS |
| ACAAATACAGAACCCTTCTT+CGG | 0.485262 | 5.1:+2148861 | None:intergenic |
| CAATTGGCTCAATGTCTCCT+AGG | 0.493446 | 5.1:-2150824 | MS.gene21881:CDS |
| TCTTTCCACATGTCATGCAT+TGG | 0.514242 | 5.1:+2151004 | None:intergenic |
| ATTGCATGAACTTCTTCAGA+AGG | 0.532906 | 5.1:-2151506 | MS.gene21881:CDS |
| ATTGCAGTTGTTCCGAAGAA+GGG | 0.549801 | 5.1:-2148873 | MS.gene21881:intron |
| CTTGCACAAAATTATCAAGA+AGG | 0.550602 | 5.1:+2151425 | None:intergenic |
| AGATAAACTAGATTCAAGAA+AGG | 0.561327 | 5.1:-2148802 | MS.gene21881:CDS |
| TTTCTTCATCTTCTCAAACA+AGG | 0.563095 | 5.1:-2151393 | MS.gene21881:CDS |
| CTCCTAGGTGCAGATCTACA+TGG | 0.569680 | 5.1:-2150809 | MS.gene21881:CDS |
| TTGCATGAACTTCTTCAGAA+GGG | 0.595042 | 5.1:-2151505 | MS.gene21881:CDS |
| AGTTGTTGCTTAAATCCACT+GGG | 0.610453 | 5.1:-2150973 | MS.gene21881:intron |
| TCAAGCCAATGCATGACATG+TGG | 0.623887 | 5.1:-2151009 | MS.gene21881:CDS |
| ACTGAAGATAATAAATTCCG+AGG | 0.626423 | 5.1:-2149856 | MS.gene21881:intron |
| GCAGCACAAAAGTACATGCA+AGG | 0.640542 | 5.1:-2151478 | MS.gene21881:CDS |
| TCTGCTCACAACTAATGGGG+AGG | 0.647144 | 5.1:-2151702 | None:intergenic |
| TAGTTTATCTCCAAGCAGAG+TGG | 0.678445 | 5.1:+2148815 | None:intergenic |
| CACCATGTAGATCTGCACCT+AGG | 0.706017 | 5.1:+2150807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATTAATGAATAATA+AGG | - | chr5.1:2150787-2150806 | MS.gene21881:intron | 10.0% |
| !!! | AATTAACAAATCAAAGTATT+TGG | + | chr5.1:2151589-2151608 | None:intergenic | 15.0% |
| !!! | ATTGAATCACTTTTTATTTA+GGG | - | chr5.1:2151295-2151314 | MS.gene21881:intron | 15.0% |
| !!! | ATTTCATTTTCTTAGTAAAA+GGG | + | chr5.1:2151379-2151398 | None:intergenic | 15.0% |
| !!! | CTATTTTTGTTTTTTGTTTT+TGG | - | chr5.1:2149720-2149739 | MS.gene21881:intron | 15.0% |
| !!! | TATTTCATTTTCTTAGTAAA+AGG | + | chr5.1:2151380-2151399 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCCAAGTGTA+AGG | + | chr5.1:2150161-2150180 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAAGAGAAAA+TGG | + | chr5.1:2151355-2151374 | None:intergenic | 20.0% |
| !! | AGAATTAAGAAAGAGAAAAT+GGG | + | chr5.1:2151354-2151373 | None:intergenic | 20.0% |
| !! | AGTCATTCTTATAAACAATA+TGG | - | chr5.1:2151074-2151093 | MS.gene21881:intron | 20.0% |
| !! | ATGAAACAACATAAAAAACA+TGG | - | chr5.1:2149151-2149170 | MS.gene21881:intron | 20.0% |
| !!! | ATGTTTTTTATGTTGTTTCA+TGG | + | chr5.1:2149152-2149171 | None:intergenic | 20.0% |
| !!! | ATTTGCTACATATAATTGTA+CGG | - | chr5.1:2151185-2151204 | MS.gene21881:intron | 20.0% |
| !!! | GATTGAATCACTTTTTATTT+AGG | - | chr5.1:2151294-2151313 | MS.gene21881:intron | 20.0% |
| !!! | TTCTATTTTTAAGTAGTGAA+AGG | + | chr5.1:2150653-2150672 | None:intergenic | 20.0% |
| !!! | TTTCATTTTCTTAGTAAAAG+GGG | + | chr5.1:2151378-2151397 | None:intergenic | 20.0% |
| !!! | TTTTGATCTAACTAAAACTT+TGG | + | chr5.1:2151330-2151349 | None:intergenic | 20.0% |
| ! | AAAACTTCAACTTAAGCAAA+CGG | + | chr5.1:2151507-2151526 | None:intergenic | 25.0% |
| ! | AAAGCTCAAGATAAATGAAA+TGG | + | chr5.1:2149781-2149800 | None:intergenic | 25.0% |
| ! | AAGAAGTTCATGCAATATTT+CGG | + | chr5.1:2148969-2148988 | None:intergenic | 25.0% |
| ! | AAGTCAAATTAGAACAATCA+GGG | + | chr5.1:2148907-2148926 | None:intergenic | 25.0% |
| ! | AAGTGATTCAATCGTAAATT+AGG | + | chr5.1:2151287-2151306 | None:intergenic | 25.0% |
| ! | AATATTTCATATGCATCGAA+AGG | - | chr5.1:2149881-2149900 | MS.gene21881:CDS | 25.0% |
| ! | ACAATTATATGTAGCAAATC+TGG | + | chr5.1:2151184-2151203 | None:intergenic | 25.0% |
| ! | ACATAAAAAACATGGATCAA+TGG | - | chr5.1:2149159-2149178 | MS.gene21881:intron | 25.0% |
| ! | ACTATGCTAAAGTTTCAAAA+CGG | + | chr5.1:2150824-2150843 | None:intergenic | 25.0% |
| ! | AGACGAGTAAAAAAATCAAT+AGG | + | chr5.1:2151252-2151271 | None:intergenic | 25.0% |
| ! | AGATAAACTAGATTCAAGAA+AGG | - | chr5.1:2151677-2151696 | MS.gene21881:intron | 25.0% |
| ! | ATGTGACACTTACAATATTA+TGG | - | chr5.1:2151434-2151453 | MS.gene21881:CDS | 25.0% |
| ! | CAAAAAACAAAAATAGAGTG+TGG | + | chr5.1:2149716-2149735 | None:intergenic | 25.0% |
| ! | CATTAATACTTGAGAAATAC+AGG | + | chr5.1:2150705-2150724 | None:intergenic | 25.0% |
| ! | GCTTATATGTTTGAATGTAA+AGG | - | chr5.1:2150951-2150970 | MS.gene21881:intron | 25.0% |
| ! | TAAGTCAAATTAGAACAATC+AGG | + | chr5.1:2148908-2148927 | None:intergenic | 25.0% |
| ! | TTACAATATTATGGCTGAAT+TGG | - | chr5.1:2151443-2151462 | MS.gene21881:CDS | 25.0% |
| !! | AACTTATGTTGAATGCTTTT+AGG | - | chr5.1:2150198-2150217 | MS.gene21881:intron | 25.0% |
| !! | TTCATTTATCTTGAGCTTTT+TGG | - | chr5.1:2149782-2149801 | MS.gene21881:intron | 25.0% |
| !! | TTTTAATGACTTATCAGTTC+TGG | - | chr5.1:2151523-2151542 | MS.gene21881:CDS | 25.0% |
| !! | TTTTCATTTCGTCTTTCATT+GGG | - | chr5.1:2149307-2149326 | MS.gene21881:intron | 25.0% |
| !! | TTTTTCATTTCGTCTTTCAT+TGG | - | chr5.1:2149306-2149325 | MS.gene21881:intron | 25.0% |
| !!! | GATTGAACATATTGACTTTT+TGG | + | chr5.1:2148836-2148855 | None:intergenic | 25.0% |
| AAACTAGATTCAAGAAAGGT+TGG | - | chr5.1:2151681-2151700 | MS.gene21881:intron | 30.0% | |
| AAATTTGTCTGCATAACATG+TGG | + | chr5.1:2150453-2150472 | None:intergenic | 30.0% | |
| ACTGAAGATAATAAATTCCG+AGG | - | chr5.1:2150623-2150642 | MS.gene21881:intron | 30.0% | |
| ACTTACTTATGGAACTCTTT+AGG | + | chr5.1:2149190-2149209 | None:intergenic | 30.0% | |
| ATATGGCTGAGATTCTTATT+TGG | - | chr5.1:2151091-2151110 | MS.gene21881:intron | 30.0% | |
| ATTCAAATGAGAAACATTCC+CGG | + | chr5.1:2150087-2150106 | None:intergenic | 30.0% | |
| CATTATTAGATTGTCCTATC+AGG | - | chr5.1:2151129-2151148 | MS.gene21881:intron | 30.0% | |
| CTGATAGGACAATCTAATAA+TGG | + | chr5.1:2151131-2151150 | None:intergenic | 30.0% | |
| CTTGCACAAAATTATCAAGA+AGG | + | chr5.1:2149057-2149076 | None:intergenic | 30.0% | |
| TAACTAGCAGACAACTATTT+AGG | + | chr5.1:2150412-2150431 | None:intergenic | 30.0% | |
| TACTTGAGATATAACCTGAT+AGG | + | chr5.1:2151146-2151165 | None:intergenic | 30.0% | |
| TGGATGTTAATTATTTCCCA+CGG | - | chr5.1:2149837-2149856 | MS.gene21881:intron | 30.0% | |
| TTATATGTAGCAAATCTGGT+TGG | + | chr5.1:2151180-2151199 | None:intergenic | 30.0% | |
| TTATTCCTGGAACAATAAAC+AGG | + | chr5.1:2149634-2149653 | None:intergenic | 30.0% | |
| TTCTTCATCTTCTCAAACAA+GGG | - | chr5.1:2149087-2149106 | MS.gene21881:intron | 30.0% | |
| TTGTTCCAGGAATAATCAAT+TGG | - | chr5.1:2149639-2149658 | MS.gene21881:intron | 30.0% | |
| TTTCATTTCGTCTTTCATTG+GGG | - | chr5.1:2149308-2149327 | MS.gene21881:intron | 30.0% | |
| TTTCTTCATCTTCTCAAACA+AGG | - | chr5.1:2149086-2149105 | MS.gene21881:intron | 30.0% | |
| ! | ATGAACAGTGATTACTGATT+AGG | + | chr5.1:2149428-2149447 | None:intergenic | 30.0% |
| ! | GAGAAGATGTATTTTATGAC+AGG | - | chr5.1:2150997-2151016 | MS.gene21881:CDS | 30.0% |
| ! | GAGCTTTTTGGATAATTACA+AGG | - | chr5.1:2149794-2149813 | MS.gene21881:intron | 30.0% |
| ! | TACACTTTATGGAAGTATGT+TGG | - | chr5.1:2149225-2149244 | MS.gene21881:intron | 30.0% |
| ! | TGTAAACTAACCCATTTTAC+TGG | - | chr5.1:2150551-2150570 | MS.gene21881:intron | 30.0% |
| ! | TTTCTAAGAACACCAAAAGT+AGG | + | chr5.1:2149949-2149968 | None:intergenic | 30.0% |
| !! | AAGGACAGTTATTTTGTCAT+TGG | - | chr5.1:2149813-2149832 | MS.gene21881:intron | 30.0% |
| !! | ACAGTTATTTTGTCATTGGT+TGG | - | chr5.1:2149817-2149836 | MS.gene21881:intron | 30.0% |
| !! | CTTCTTGATAATTTTGTGCA+AGG | - | chr5.1:2149055-2149074 | MS.gene21881:intron | 30.0% |
| !! | GAAGTATTTTACGCAATCAT+TGG | - | chr5.1:2149980-2149999 | MS.gene21881:intron | 30.0% |
| !!! | CTACATGGTGCTATTATTTT+AGG | - | chr5.1:2149685-2149704 | MS.gene21881:intron | 30.0% |
| !!! | GTGTTCAGTTGCTTTTAAAA+TGG | - | chr5.1:2150904-2150923 | MS.gene21881:intron | 30.0% |
| !!! | TTTTAGAGTTCAGACTTCAA+AGG | + | chr5.1:2148860-2148879 | None:intergenic | 30.0% |
| AAATACAGGAATAACAGCTC+TGG | + | chr5.1:2150691-2150710 | None:intergenic | 35.0% | |
| AAGTAGTGAAAGGATTACCT+CGG | + | chr5.1:2150643-2150662 | None:intergenic | 35.0% | |
| ACAAACCTGTTTATTGTTCC+AGG | - | chr5.1:2149626-2149645 | MS.gene21881:intron | 35.0% | |
| ACAAATACAGAACCCTTCTT+CGG | + | chr5.1:2151621-2151640 | None:intergenic | 35.0% | |
| AGAGACCTTGAACTTACTTA+TGG | + | chr5.1:2149201-2149220 | None:intergenic | 35.0% | |
| ATTCACAGGTTTCATTACAG+CGG | + | chr5.1:2149925-2149944 | None:intergenic | 35.0% | |
| ATTGCATGAACTTCTTCAGA+AGG | - | chr5.1:2148973-2148992 | MS.gene21881:intron | 35.0% | |
| CAAATTTGTACAGCAAACAC+TGG | + | chr5.1:2150770-2150789 | None:intergenic | 35.0% | |
| GAGTTCCATAAGTAAGTTCA+AGG | - | chr5.1:2149193-2149212 | MS.gene21881:intron | 35.0% | |
| GATTTAATAACAGTACCCAG+TGG | + | chr5.1:2149524-2149543 | None:intergenic | 35.0% | |
| GGAATTCTTAGATTCATGCT+AGG | - | chr5.1:2149329-2149348 | MS.gene21881:intron | 35.0% | |
| GGTCTCTAAACTACACTTTA+TGG | - | chr5.1:2149214-2149233 | MS.gene21881:intron | 35.0% | |
| TAGTAAGATGAGCTTCTGAT+TGG | - | chr5.1:2150035-2150054 | MS.gene21881:intron | 35.0% | |
| TGTGCAATTCATCAATAGCA+AGG | + | chr5.1:2149546-2149565 | None:intergenic | 35.0% | |
| TTGAGCCAATTGATTATTCC+TGG | + | chr5.1:2149647-2149666 | None:intergenic | 35.0% | |
| TTGCATGAACTTCTTCAGAA+GGG | - | chr5.1:2148974-2148993 | MS.gene21881:intron | 35.0% | |
| ! | AAGTTGTTGCTTAAATCCAC+TGG | - | chr5.1:2149505-2149524 | MS.gene21881:intron | 35.0% |
| ! | AGTGTAAGGAGCATGAAAAA+AGG | + | chr5.1:2150147-2150166 | None:intergenic | 35.0% |
| ! | AGTTGTTGCTTAAATCCACT+GGG | - | chr5.1:2149506-2149525 | MS.gene21881:intron | 35.0% |
| ! | GATGTATTTTATGACAGGCA+TGG | - | chr5.1:2151002-2151021 | MS.gene21881:CDS | 35.0% |
| ! | GGTTTAGCATTTTCTGTTGT+AGG | + | chr5.1:2149760-2149779 | None:intergenic | 35.0% |
| ! | GTGTAAGGAGCATGAAAAAA+GGG | + | chr5.1:2150146-2150165 | None:intergenic | 35.0% |
| ! | TCAGCACTTTTATTCTCTCA+CGG | - | chr5.1:2149586-2149605 | MS.gene21881:intron | 35.0% |
| ! | TTGACTCGAAAGTCGTTAAT+AGG | - | chr5.1:2151406-2151425 | MS.gene21881:CDS | 35.0% |
| ! | TTGGTGTTCTTAGAAAGAGT+TGG | - | chr5.1:2149953-2149972 | MS.gene21881:intron | 35.0% |
| ! | TTTTTCATGCTCCTTACACT+TGG | - | chr5.1:2150147-2150166 | MS.gene21881:intron | 35.0% |
| !! | TTGTACTACAAGTTGATTGC+TGG | - | chr5.1:2151637-2151656 | MS.gene21881:intron | 35.0% |
| AATTGCAGTTGTTCCGAAGA+AGG | - | chr5.1:2151605-2151624 | MS.gene21881:intron | 40.0% | |
| ACACAGAATTGTGATGCTCA+AGG | + | chr5.1:2151483-2151502 | None:intergenic | 40.0% | |
| ATAAAGACATGAGCATCCGT+GGG | + | chr5.1:2149856-2149875 | None:intergenic | 40.0% | |
| ATACACTACCACAAACTGCA+GGG | + | chr5.1:2149272-2149291 | None:intergenic | 40.0% | |
| ATCCACATGTTATGCAGTTG+TGG | - | chr5.1:2150526-2150545 | MS.gene21881:intron | 40.0% | |
| ATTGCAGTTGTTCCGAAGAA+GGG | - | chr5.1:2151606-2151625 | MS.gene21881:intron | 40.0% | |
| CAATGCATGTTGAGTCATCT+AGG | + | chr5.1:2150317-2150336 | None:intergenic | 40.0% | |
| CTAGCAGACAACTATTTAGG+AGG | + | chr5.1:2150409-2150428 | None:intergenic | 40.0% | |
| GACAACTATTTAGGAGGTAG+AGG | + | chr5.1:2150403-2150422 | None:intergenic | 40.0% | |
| TAGTTTATCTCCAAGCAGAG+TGG | + | chr5.1:2151667-2151686 | None:intergenic | 40.0% | |
| TATACACTACCACAAACTGC+AGG | + | chr5.1:2149273-2149292 | None:intergenic | 40.0% | |
| TCTTTCCACATGTCATGCAT+TGG | + | chr5.1:2149478-2149497 | None:intergenic | 40.0% | |
| ! | AACCTGTGAATGCCTACTTT+TGG | - | chr5.1:2149934-2149953 | MS.gene21881:CDS | 40.0% |
| ! | ATGAGCTTCTGATTGGTTCA+AGG | - | chr5.1:2150042-2150061 | MS.gene21881:intron | 40.0% |
| ! | CTAACCCATTTTACTGGAAC+TGG | - | chr5.1:2150557-2150576 | MS.gene21881:intron | 40.0% |
| ! | CTGCTTGTTACTCAAGAAAG+CGG | + | chr5.1:2151047-2151066 | None:intergenic | 40.0% |
| ! | GTGAAACTGCAGAAGCTTTT+GGG | - | chr5.1:2150594-2150613 | MS.gene21881:intron | 40.0% |
| ! | GTTGAGTCATCTAGGAGTTT+TGG | + | chr5.1:2150309-2150328 | None:intergenic | 40.0% |
| !! | CAGTTTTCTTCTGAAAGAGG+AGG | - | chr5.1:2148935-2148954 | MS.gene21881:intron | 40.0% |
| !! | CTGCAGTTTTCTTCTGAAAG+AGG | - | chr5.1:2148932-2148951 | MS.gene21881:intron | 40.0% |
| ATACCTAGGTCTTCTTCTCC+GGG | - | chr5.1:2150066-2150085 | MS.gene21881:intron | 45.0% | |
| CACCAAAAGTAGGCATTCAC+AGG | + | chr5.1:2149939-2149958 | None:intergenic | 45.0% | |
| CATAAAGACATGAGCATCCG+TGG | + | chr5.1:2149857-2149876 | None:intergenic | 45.0% | |
| CATACCTAGGTCTTCTTCTC+CGG | - | chr5.1:2150065-2150084 | MS.gene21881:intron | 45.0% | |
| CTCCACAACTGCATAACATG+TGG | + | chr5.1:2150531-2150550 | None:intergenic | 45.0% | |
| GCCACCAGTTCCAGTAAAAT+GGG | + | chr5.1:2150564-2150583 | None:intergenic | 45.0% | |
| GGGCTGTAGTAGTAATGACA+AGG | + | chr5.1:2149252-2149271 | None:intergenic | 45.0% | |
| TCAAGCCAATGCATGACATG+TGG | - | chr5.1:2149470-2149489 | MS.gene21881:intron | 45.0% | |
| TGCCACCAGTTCCAGTAAAA+TGG | + | chr5.1:2150565-2150584 | None:intergenic | 45.0% | |
| ! | ACCCATTTTACTGGAACTGG+TGG | - | chr5.1:2150560-2150579 | MS.gene21881:intron | 45.0% |
| ! | CAATTGGCTCAATGTCTCCT+AGG | - | chr5.1:2149655-2149674 | MS.gene21881:intron | 45.0% |
| ! | CGTGAAACTGCAGAAGCTTT+TGG | - | chr5.1:2150593-2150612 | MS.gene21881:intron | 45.0% |
| ! | GATTGGTTCAAGGCATACCT+AGG | - | chr5.1:2150052-2150071 | MS.gene21881:intron | 45.0% |
| ! | GCAGCACAAAAGTACATGCA+AGG | - | chr5.1:2149001-2149020 | MS.gene21881:intron | 45.0% |
| ATTCCCGGAGAAGAAGACCT+AGG | + | chr5.1:2150072-2150091 | None:intergenic | 50.0% | |
| CACCATGTAGATCTGCACCT+AGG | + | chr5.1:2149675-2149694 | None:intergenic | 50.0% | |
| CTCCTAGGTGCAGATCTACA+TGG | - | chr5.1:2149670-2149689 | MS.gene21881:intron | 50.0% | |
| TACTACAGCCCTGCAGTTTG+TGG | - | chr5.1:2149261-2149280 | MS.gene21881:intron | 50.0% | |
| ! | CGTGCCACTGGGAATGAAAA+GGG | + | chr5.1:2150113-2150132 | None:intergenic | 50.0% |
| ! | TCCTCCCTTTTCATTCCCAG+TGG | - | chr5.1:2150106-2150125 | MS.gene21881:intron | 50.0% |
| GCCACTGGGAATGAAAAGGG+AGG | + | chr5.1:2150110-2150129 | None:intergenic | 55.0% | |
| TGCTGGAAAGCCACTCTGCT+TGG | - | chr5.1:2151654-2151673 | MS.gene21881:intron | 55.0% | |
| ! | GCGTGCCACTGGGAATGAAA+AGG | + | chr5.1:2150114-2150133 | None:intergenic | 55.0% |
| ! | GTATGCGTATGCGTGCCACT+GGG | + | chr5.1:2150124-2150143 | None:intergenic | 55.0% |
| GGTATGCGTATGCGTGCCAC+TGG | + | chr5.1:2150125-2150144 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2148791 | 2151710 | 2148791 | ID=MS.gene21881 |
| chr5.1 | mRNA | 2148791 | 2151710 | 2148791 | ID=MS.gene21881.t1;Parent=MS.gene21881 |
| chr5.1 | exon | 2151703 | 2151710 | 2151703 | ID=MS.gene21881.t1.exon1;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2151703 | 2151710 | 2151703 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| chr5.1 | exon | 2151298 | 2151549 | 2151298 | ID=MS.gene21881.t1.exon2;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2151298 | 2151549 | 2151298 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| chr5.1 | exon | 2150974 | 2151042 | 2150974 | ID=MS.gene21881.t1.exon3;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2150974 | 2151042 | 2150974 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| chr5.1 | exon | 2150795 | 2150853 | 2150795 | ID=MS.gene21881.t1.exon4;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2150795 | 2150853 | 2150795 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| chr5.1 | exon | 2149857 | 2149958 | 2149857 | ID=MS.gene21881.t1.exon5;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2149857 | 2149958 | 2149857 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| chr5.1 | exon | 2148791 | 2148888 | 2148791 | ID=MS.gene21881.t1.exon6;Parent=MS.gene21881.t1 |
| chr5.1 | CDS | 2148791 | 2148888 | 2148791 | ID=cds.MS.gene21881.t1;Parent=MS.gene21881.t1 |
| Gene Sequence |
| Protein sequence |
