AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015803


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015803.t1 MTR_8g102580 95.359 668 21 1 1 658 1 668 0.0 1321
MS.gene015803.t1 MTR_5g098680 79.882 676 116 6 1 658 5 678 0.0 1059
MS.gene015803.t1 MTR_3g114910 59.821 448 114 9 20 467 12 393 0.0 529
MS.gene015803.t1 MTR_6g053210 42.522 341 72 7 45 384 8 225 3.33e-69 228
MS.gene015803.t1 MTR_6g053210 65.385 78 27 0 581 658 233 310 1.69e-22 99.0
MS.gene015803.t1 MTR_6g061270 31.183 186 108 6 261 428 223 406 2.33e-14 77.0
MS.gene015803.t1 MTR_1g035420 33.333 150 89 3 261 399 217 366 2.87e-14 76.6
MS.gene015803.t1 MTR_6g061200 31.183 186 108 6 261 428 223 406 5.40e-14 75.9
MS.gene015803.t1 MTR_8g070070 34.641 153 86 4 261 399 325 477 1.19e-12 71.6
MS.gene015803.t1 MTR_8g070075 32.026 153 90 3 261 399 318 470 2.06e-11 67.8
MS.gene015803.t1 MTR_8g071030 33.987 153 87 4 261 399 305 457 2.23e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015803.t1 AT1G57820 61.270 630 208 12 4 606 6 626 0.0 758
MS.gene015803.t1 AT1G57820 60.979 633 208 12 4 606 6 629 0.0 758
MS.gene015803.t1 AT1G57820 60.979 633 208 12 4 606 6 629 0.0 758
MS.gene015803.t1 AT5G39550 58.678 605 207 11 1 584 3 585 0.0 702
MS.gene015803.t1 AT1G66040 59.631 597 201 11 1 576 3 580 0.0 694
MS.gene015803.t1 AT1G66050 59.631 597 201 11 1 576 3 580 0.0 694
MS.gene015803.t1 AT1G57800 52.799 661 246 15 2 605 4 655 0.0 665
MS.gene015803.t1 AT1G57800 52.424 660 246 15 2 605 4 651 0.0 657
MS.gene015803.t1 AT4G08590 50.759 461 180 12 4 452 6 431 3.56e-148 438
MS.gene015803.t1 AT4G08590 50.870 460 180 12 4 452 6 430 8.36e-148 437
MS.gene015803.t1 AT4G08590 50.446 448 175 12 4 439 6 418 1.24e-141 420
MS.gene015803.t1 AT4G08590 49.029 412 163 12 4 403 6 382 2.33e-123 372
MS.gene015803.t1 AT4G08590 47.208 394 162 11 4 386 6 364 4.53e-111 339
MS.gene015803.t1 AT4G08590 47.208 394 162 11 4 386 6 364 4.53e-111 339
MS.gene015803.t1 AT2G35160 35.032 157 87 6 261 403 333 488 1.31e-12 71.6
MS.gene015803.t1 AT2G35160 35.032 157 87 6 261 403 369 524 1.48e-12 71.6
MS.gene015803.t1 AT2G35160 35.032 157 87 6 261 403 369 524 1.48e-12 71.6
MS.gene015803.t1 AT2G35160 35.032 157 87 6 261 403 369 524 1.48e-12 71.6
MS.gene015803.t1 AT2G35160 35.032 157 87 6 261 403 369 524 1.48e-12 71.6
MS.gene015803.t1 AT5G13960 31.343 201 106 7 261 435 153 347 1.85e-12 70.9
MS.gene015803.t1 AT5G13960 34.615 156 81 6 295 435 64 213 1.99e-12 70.5
MS.gene015803.t1 AT2G22740 28.507 221 128 6 261 463 334 542 7.65e-12 69.3
MS.gene015803.t1 AT2G22740 28.507 221 128 6 261 463 334 542 7.65e-12 69.3

Find 189 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATGTGGCTGGCATTGC+TGG 0.165381 4.3:-2695708 MS.gene015803:CDS
GGCTCAATCTGTTGCACTTT+CGG 0.170233 4.3:-2695670 MS.gene015803:CDS
CGCATTGATTCGTGGATTAC+TGG 0.205826 4.3:+2696034 None:intergenic
GCTCAATCTGTTGCACTTTC+GGG 0.210487 4.3:-2695669 MS.gene015803:CDS
ACCATTCCGAAAGATCATTT+TGG 0.229790 4.3:-2695831 MS.gene015803:CDS
TTTCTGGCCAAAGTTATATT+AGG 0.257421 4.3:-2694250 MS.gene015803:CDS
CCATCTGTTCAGCCTGTTGC+TGG 0.265242 4.3:+2693509 None:intergenic
TCAACACTATGATAAACTTT+TGG 0.267094 4.3:+2695942 None:intergenic
GAGAAATGCTGGCGCAAAAT+TGG 0.280557 4.3:-2695281 MS.gene015803:CDS
TTCACTGGCTTCTTACTTAG+AGG 0.297296 4.3:+2694570 None:intergenic
CCTTTAAACTCCTTAATTAC+AGG 0.297648 4.3:+2694924 None:intergenic
TCAGTTGTATAAGCAGTATC+AGG 0.302375 4.3:+2695906 None:intergenic
CCTGTAATTAAGGAGTTTAA+AGG 0.304552 4.3:-2694924 MS.gene015803:CDS
CCGTCCACTACCTGTAATTA+AGG 0.306280 4.3:-2694934 MS.gene015803:CDS
TTGCTCTGTAGTGATTTATC+AGG 0.331832 4.3:-2694966 MS.gene015803:intron
GAAACCTCTGTCTCCTCATC+TGG 0.333300 4.3:+2693439 None:intergenic
GACTGCAATTCCAGCGAAAA+TGG 0.341889 4.3:-2696057 MS.gene015803:CDS
AGAATTGAGGTTGGAATTAG+AGG 0.343041 4.3:+2696731 None:intergenic
CAACTTCTGCAAAGCTTGCC+TGG 0.358824 4.3:-2694282 MS.gene015803:CDS
TGAAAGAAACTAACAGTAAC+AGG 0.365938 4.3:+2696446 None:intergenic
GTCTAAATTTCAGGAGGAAA+AGG 0.367223 4.3:-2694619 MS.gene015803:intron
GGGTTCTTGTTGGTGATACA+TGG 0.371099 4.3:-2695770 MS.gene015803:CDS
GATAGGGTCATAAGGTTTGC+AGG 0.378221 4.3:-2695133 MS.gene015803:intron
ACTAGATCTCCGGCGATAGA+TGG 0.381976 4.3:+2696656 None:intergenic
TCATATCTCACTCCTGCTTC+CGG 0.383404 4.3:+2695320 None:intergenic
CCCTATTCCTAATATAACTT+TGG 0.385855 4.3:+2694243 None:intergenic
GCCAAAGTTATATTAGGAAT+AGG 0.386276 4.3:-2694244 MS.gene015803:CDS
ATCGGTCCAAAATGATCTTT+CGG 0.386659 4.3:+2695825 None:intergenic
CTCAGAGTGGCCGCGCTTTG+CGG 0.393158 4.3:-2694217 MS.gene015803:CDS
GTTATCCTGTTCGTGTTGTT+AGG 0.396528 4.3:-2695491 MS.gene015803:intron
GCTCACTTTCCCCATGTGGC+TGG 0.410799 4.3:-2695717 MS.gene015803:CDS
CCAAAGTTATATTAGGAATA+GGG 0.411543 4.3:-2694243 MS.gene015803:CDS
CAAAGCAATGGCTTTAAACT+AGG 0.414652 4.3:-2693275 None:intergenic
CTTTCTGTGATAGGGTCATA+AGG 0.415365 4.3:-2695141 MS.gene015803:intron
TAGGATGGACTGTAGGCAAT+GGG 0.422920 4.3:-2695742 MS.gene015803:CDS
TCCAACCTCAATTCTCGATT+GGG 0.423904 4.3:-2696723 MS.gene015803:CDS
GAAGTAAAATAAAAGTTGTT+AGG 0.426055 4.3:-2694527 MS.gene015803:CDS
AACTCCTTAATTACAGGTAG+TGG 0.426574 4.3:+2694930 None:intergenic
CTATTGTTTGTTTCACCAGT+TGG 0.427799 4.3:+2696542 None:intergenic
AACGAACTTGCTCGAATTGT+AGG 0.430282 4.3:-2696079 MS.gene015803:CDS
TTCCAACCTCAATTCTCGAT+TGG 0.431388 4.3:-2696724 MS.gene015803:CDS
GCCAACTGCGCATTGATTCG+TGG 0.435702 4.3:+2696026 None:intergenic
AACCTTGTAGATCCCGTAGA+TGG 0.441088 4.3:-2694549 MS.gene015803:CDS
CATAGAATCACTCCAGCAAC+AGG 0.450682 4.3:-2693521 MS.gene015803:CDS
TGAAGGGTTTCAGTTTCTAA+AGG 0.455219 4.3:+2696794 None:intergenic
GGCTTCTTACTTAGAGGTGG+AGG 0.455434 4.3:+2694576 None:intergenic
AGGAAAAGGGCTGTTGGTTG+TGG 0.457564 4.3:-2694605 MS.gene015803:CDS
TCTAAATTTCAGGAGGAAAA+GGG 0.458204 4.3:-2694618 MS.gene015803:intron
AATATAACTTTGGCCAGAAA+AGG 0.463331 4.3:+2694253 None:intergenic
GAAGCAGGAGTGAGATATGA+TGG 0.463457 4.3:-2695317 MS.gene015803:CDS
ATAGGTAAACAGGGAAATGA+TGG 0.472208 4.3:-2693548 MS.gene015803:intron
ACTGAGAGAGCAAAGAAAAC+AGG 0.475334 4.3:-2695888 MS.gene015803:CDS
CTAACAGTAACAGGTCTCTC+AGG 0.475349 4.3:+2696455 None:intergenic
TTGCGCATGTTCGACAATGA+AGG 0.476061 4.3:+2696777 None:intergenic
TTTGAGAGATGGATTAAGCT+AGG 0.476184 4.3:-2696104 MS.gene015803:CDS
TTCTGCAAAGCTTGCCTGGA+GGG 0.476412 4.3:-2694278 MS.gene015803:CDS
AGCAGAACGTTTCTCCTTGT+GGG 0.480480 4.3:+2695349 None:intergenic
ACCCTGCGATCTTGCTACCT+TGG 0.482344 4.3:+2695986 None:intergenic
CCTTTCCTCCGTTTCTGTGG+AGG 0.482447 4.3:+2693358 None:intergenic
TCTGCTTATGCACCGGAAGC+AGG 0.484529 4.3:-2695332 MS.gene015803:CDS
ACAGACCTAACAACACGAAC+AGG 0.484685 4.3:+2695486 None:intergenic
ACCAACCTTGTCCATGGAGC+TGG 0.485991 4.3:+2695083 None:intergenic
TTTATAGAATTGAGAAATGC+TGG 0.487676 4.3:-2695292 MS.gene015803:CDS
GCAGCGGAATCGCCGGCGAC+GGG 0.487908 4.3:+2696680 None:intergenic
AAAGAAAGGGTGATCCATCA+TGG 0.491109 4.3:-2694884 MS.gene015803:CDS
GCAAGATCGCAGGGTGGTGT+TGG 0.495237 4.3:-2695978 MS.gene015803:CDS
GATTGATATTACTGAAAGAA+AGG 0.496742 4.3:-2694898 MS.gene015803:CDS
GGTGGGGCTTCTAATCCAAC+TGG 0.497248 4.3:-2696557 MS.gene015803:CDS
AGATGGAGCAGCGGAATCGC+CGG 0.497890 4.3:+2696673 None:intergenic
AGAACCCCACGGTTCCTTGT+TGG 0.498957 4.3:+2695786 None:intergenic
CAATATATGTCGCAAGGTGT+TGG 0.499103 4.3:-2694333 MS.gene015803:CDS
AGCAGCGGAATCGCCGGCGA+CGG 0.500128 4.3:+2696679 None:intergenic
ACTGGCTTCTTACTTAGAGG+TGG 0.502069 4.3:+2694573 None:intergenic
ATCTGAATCCTCCACAGAAA+CGG 0.503509 4.3:-2693366 MS.gene015803:CDS
AAAGGTGTCCTTCAAAATCA+AGG 0.505676 4.3:-2694493 MS.gene015803:CDS
AGGAACCGTGGGGTTCTTGT+TGG 0.509560 4.3:-2695780 MS.gene015803:CDS
CTCAGACTGAGTTGTCGAAA+AGG 0.510946 4.3:-2695513 MS.gene015803:CDS
AGGTGCTGGTGGCAAGGCTG+CGG 0.516252 4.3:-2693338 MS.gene015803:CDS
GGAAAGGCAAATGCTTGCAG+TGG 0.518736 4.3:-2695867 MS.gene015803:CDS
TTCAGGAGGAAAAGGGCTGT+TGG 0.518740 4.3:-2694611 MS.gene015803:intron
AGATCGCAGGGTGGTGTTGG+AGG 0.520960 4.3:-2695975 MS.gene015803:CDS
CTTAATTACAGGTAGTGGAC+GGG 0.521249 4.3:+2694935 None:intergenic
CCAGCAACAGGCTGAACAGA+TGG 0.522139 4.3:-2693509 MS.gene015803:CDS
ATCATTCTCGATGGCGCGAA+TGG 0.523127 4.3:+2696628 None:intergenic
GGCCAGAAAAGGCACCCTCC+AGG 0.525887 4.3:+2694264 None:intergenic
TCCACGAATCAATGCGCAGT+TGG 0.529107 4.3:-2696027 MS.gene015803:CDS
GGTTCTTGTTGGTGATACAT+GGG 0.529549 4.3:-2695769 MS.gene015803:CDS
GCACCTTTCCTCCGTTTCTG+TGG 0.530401 4.3:+2693355 None:intergenic
TGCGCATGTTCGACAATGAA+GGG 0.532166 4.3:+2696778 None:intergenic
GGCCAAGGTAGCAAGATCGC+AGG 0.532514 4.3:-2695988 MS.gene015803:CDS
AAGCAGAACGTTTCTCCTTG+TGG 0.535286 4.3:+2695348 None:intergenic
GGATCATTCTCAGCAACAAT+CGG 0.537495 4.3:+2695807 None:intergenic
ATTGATATTACTGAAAGAAA+GGG 0.540474 4.3:-2694897 MS.gene015803:CDS
AACGACAAGAACTCGTTGGT+GGG 0.540602 4.3:-2696574 MS.gene015803:CDS
TGGCAAGGCTGCGGCGAACA+CGG 0.540848 4.3:-2693329 MS.gene015803:CDS
CTATGTCAGTTGAACAAGTA+GGG 0.541131 4.3:+2694171 None:intergenic
GAGGAAAGGTGCTGGTGGCA+AGG 0.542633 4.3:-2693344 MS.gene015803:CDS
GACCAGCAATGCCAGCCACA+TGG 0.543440 4.3:+2695706 None:intergenic
GATTGTTCTCAACCCGTCGC+CGG 0.544832 4.3:-2696692 MS.gene015803:CDS
GGCGACGGGTTGAGAACAAT+CGG 0.545056 4.3:+2696694 None:intergenic
CAATCTGTTGCACTTTCGGG+TGG 0.550312 4.3:-2695666 MS.gene015803:CDS
ACTAAAACCAACCTTGTCCA+TGG 0.553488 4.3:+2695077 None:intergenic
ACCAGCAATGCCAGCCACAT+GGG 0.555202 4.3:+2695707 None:intergenic
AATGGCGGAAACTAGATCTC+CGG 0.557159 4.3:+2696646 None:intergenic
ATAGGATGGACTGTAGGCAA+TGG 0.558208 4.3:-2695743 MS.gene015803:CDS
GCATTCCCAATCGAGAATTG+AGG 0.561022 4.3:+2696718 None:intergenic
TTGCAGAAGTTGTGAGCACA+AGG 0.563114 4.3:+2694293 None:intergenic
ACACGCCATGCAAACACCAT+CGG 0.564270 4.3:+2696826 None:intergenic
TTGGTGATACATGGGAGGAT+AGG 0.564503 4.3:-2695761 MS.gene015803:CDS
ACAAACAATAGACGCAGTAA+TGG 0.566643 4.3:-2696530 MS.gene015803:CDS
TGATACATGGGAGGATAGGA+TGG 0.568109 4.3:-2695757 MS.gene015803:CDS
TTCCATCTACGGGATCTACA+AGG 0.569005 4.3:+2694547 None:intergenic
TGTCCTTCAAAATCAAGGAT+AGG 0.570073 4.3:-2694488 MS.gene015803:CDS
AAGCAGGAGTGAGATATGAT+GGG 0.570701 4.3:-2695316 MS.gene015803:CDS
GGGTGGTTACGTCGATGATG+AGG 0.573268 4.3:-2695649 MS.gene015803:CDS
TGACGCCGATGGTGTTTGCA+TGG 0.574105 4.3:-2696831 MS.gene015803:CDS
TTTGCAGGTATTTGTTTGTG+AGG 0.577114 4.3:-2695118 MS.gene015803:CDS
GTTGGCGATTGCGATTCGTA+TGG 0.577533 4.3:-2696009 MS.gene015803:CDS
CTTACATCAAAGTCCCATGA+TGG 0.578513 4.3:+2694870 None:intergenic
CAGAAACGGAGGAAAGGTGC+TGG 0.579863 4.3:-2693352 MS.gene015803:CDS
ACGGGATCTACAAGGTTCAC+TGG 0.581841 4.3:+2694555 None:intergenic
CCTCCACAGAAACGGAGGAA+AGG 0.583231 4.3:-2693358 MS.gene015803:CDS
TCCGCTGCTCCATCTATCGC+CGG 0.586761 4.3:-2696665 MS.gene015803:CDS
ATGATCCAACAAGGAACCGT+GGG 0.587067 4.3:-2695791 MS.gene015803:CDS
TCCAAAATGATCTTTCGGAA+TGG 0.587351 4.3:+2695830 None:intergenic
TCCCAATCGAGAATTGAGGT+TGG 0.588219 4.3:+2696722 None:intergenic
GTGACAATGAGCCAGCTCCA+TGG 0.592691 4.3:-2695094 MS.gene015803:CDS
CTCAGGCAAATGCATGCAGA+AGG 0.593870 4.3:+2696472 None:intergenic
GGCTTGCTTGATATCTTCGA+CGG 0.595055 4.3:-2696509 MS.gene015803:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 4.3:-2695088 MS.gene015803:intron
ATCAAGGATAGGCTATTGAA+AGG 0.595479 4.3:-2694477 MS.gene015803:intron
GAAACGTTCTGCTTATGCAC+CGG 0.598496 4.3:-2695339 MS.gene015803:CDS
GCTATGTCAGTTGAACAAGT+AGG 0.603141 4.3:+2694170 None:intergenic
GAGAGCAAAGAAAACAGGAA+AGG 0.603334 4.3:-2695883 MS.gene015803:CDS
AAACGACAAGAACTCGTTGG+TGG 0.604581 4.3:-2696575 MS.gene015803:CDS
GGGAGCTCACTTTCCCCATG+TGG 0.605209 4.3:-2695721 MS.gene015803:CDS
CCTTAATTACAGGTAGTGGA+CGG 0.608213 4.3:+2694934 None:intergenic
TGTTGGTTTCAGACACCATG+TGG 0.611898 4.3:-2696149 MS.gene015803:intron
TAGGTAAACAGGGAAATGAT+GGG 0.612689 4.3:-2693547 MS.gene015803:CDS
TGATTATCTTCAGAATCCAC+AGG 0.613570 4.3:-2694147 MS.gene015803:intron
GCCAAGGTAGCAAGATCGCA+GGG 0.613846 4.3:-2695987 MS.gene015803:CDS
ACAGTTTGAGAACATGAATG+AGG 0.614864 4.3:-2695538 MS.gene015803:CDS
AAGAAAGGGTGATCCATCAT+GGG 0.617640 4.3:-2694883 MS.gene015803:CDS
GAAAGGCAAATGCTTGCAGT+GGG 0.618010 4.3:-2695866 MS.gene015803:CDS
CAGCTACCTTGTGACGCCGA+TGG 0.618405 4.3:-2696842 MS.gene015803:CDS
CAGTTGTATAAGCAGTATCA+GGG 0.618478 4.3:+2695907 None:intergenic
ATTGCTGGTCAGAGTACACA+CGG 0.620317 4.3:-2695693 MS.gene015803:CDS
ATTCTCGATGGCGCGAATGG+CGG 0.623248 4.3:+2696631 None:intergenic
CGGTTGCAATATATGTCGCA+AGG 0.623774 4.3:-2694339 MS.gene015803:CDS
CAAGCCAGATGAGGAGACAG+AGG 0.627835 4.3:-2693443 MS.gene015803:CDS
TTAATTACAGGTAGTGGACG+GGG 0.630700 4.3:+2694936 None:intergenic
TGATGCTTCGCTTACCGATG+AGG 0.632600 4.3:-2696609 MS.gene015803:CDS
TGAGCACAAGGCGTAGTGAG+AGG 0.632833 4.3:+2694305 None:intergenic
GGGAGGATAGGATGGACTGT+AGG 0.633787 4.3:-2695749 MS.gene015803:CDS
GTCGAACATGCGCAACTCCG+TGG 0.636269 4.3:-2696769 MS.gene015803:CDS
AAGAAACGACAAGAACTCGT+TGG 0.636427 4.3:-2696578 MS.gene015803:CDS
TATCTGGTTCAGGTCCCACA+AGG 0.638859 4.3:-2695363 MS.gene015803:intron
GGTAAACAAGGAACATGCCA+CGG 0.638895 4.3:+2696752 None:intergenic
AAACGTAGGAAGCAAAGCAA+TGG 0.642429 4.3:-2693287 MS.gene015803:CDS
GCAACAGGCTGAACAGATGG+AGG 0.643602 4.3:-2693506 MS.gene015803:CDS
GATTGCGATTCGTATGGCCA+AGG 0.645669 4.3:-2696003 MS.gene015803:CDS
AAGCGAAGCATCATTCTCGA+TGG 0.646924 4.3:+2696619 None:intergenic
TGAATCCTCCACAGAAACGG+AGG 0.653417 4.3:-2693363 MS.gene015803:CDS
TCCGGCGATAGATGGAGCAG+CGG 0.654768 4.3:+2696664 None:intergenic
TCTTGTTGGTGATACATGGG+AGG 0.655577 4.3:-2695766 MS.gene015803:CDS
GTTGGAATTAGAGGTAAACA+AGG 0.655876 4.3:+2696740 None:intergenic
TGAAAATCTCAAGCCAGATG+AGG 0.658043 4.3:-2693452 MS.gene015803:CDS
AATGATCCAACAAGGAACCG+TGG 0.659307 4.3:-2695792 MS.gene015803:CDS
CTTCTGCAAAGCTTGCCTGG+AGG 0.661026 4.3:-2694279 MS.gene015803:CDS
CCAGCAATGCCAGCCACATG+GGG 0.663982 4.3:+2695708 None:intergenic
CACGGAGGAACATATTGACG+AGG 0.665899 4.3:-2693311 MS.gene015803:CDS
CATATTGACGAGGCAAACGT+AGG 0.666576 4.3:-2693301 MS.gene015803:CDS
TTGCTGGTCAGAGTACACAC+GGG 0.671136 4.3:-2695692 MS.gene015803:CDS
AGGATGGACTGTAGGCAATG+GGG 0.672226 4.3:-2695741 MS.gene015803:CDS
ACGACAAGAACTCGTTGGTG+GGG 0.672283 4.3:-2696573 MS.gene015803:CDS
CAAACACCATCGGCGTCACA+AGG 0.672371 4.3:+2696836 None:intergenic
AGCAGGAGTGAGATATGATG+GGG 0.676405 4.3:-2695315 MS.gene015803:CDS
AAACGGAGGAAAGGTGCTGG+TGG 0.676422 4.3:-2693349 MS.gene015803:CDS
GTTGGTTTCAGACACCATGT+GGG 0.680763 4.3:-2696148 MS.gene015803:intron
TTGCTGAGAATGATCCAACA+AGG 0.687062 4.3:-2695800 MS.gene015803:CDS
TTACAGGTAGTGGACGGGGA+CGG 0.692145 4.3:+2694940 None:intergenic
AGGAATAGGGCATCTCAGAG+TGG 0.716214 4.3:-2694230 MS.gene015803:CDS
CAAGGCTGCGGCGAACACGG+AGG 0.722485 4.3:-2693326 MS.gene015803:CDS
TATCACCAACAAGAACCCCA+CGG 0.735719 4.3:+2695775 None:intergenic
TGCTGGTCAGAGTACACACG+GGG 0.735876 4.3:-2695691 MS.gene015803:CDS
TGTAAAGGAACCACTCACCG+TGG 0.737377 4.3:+2695625 None:intergenic
TGATCCAACAAGGAACCGTG+GGG 0.760116 4.3:-2695790 MS.gene015803:CDS
AAGGTAGCAAGATCGCAGGG+TGG 0.760686 4.3:-2695984 MS.gene015803:CDS
TACGTCGATGATGAGGACCA+CGG 0.776378 4.3:-2695642 MS.gene015803:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATATTAAACAAATT+AGG + chr4.3:2694703-2694722 None:intergenic 10.0%
!! AAATGTTAAAAGAAATGAAA+AGG + chr4.3:2693713-2693732 None:intergenic 15.0%
!! AACAAAAATAAGTTAAGTTA+AGG + chr4.3:2693913-2693932 None:intergenic 15.0%
!! AATGTTAAAAGAAATGAAAA+GGG + chr4.3:2693712-2693731 None:intergenic 15.0%
!! TATAGTATGTTCAATTAATA+CGG - chr4.3:2695733-2695752 MS.gene015803:CDS 15.0%
!! TCAATAATTATATTGTTATC+AGG - chr4.3:2696122-2696141 MS.gene015803:CDS 15.0%
!! TCATTTCATAATATTTGATT+TGG + chr4.3:2696249-2696268 None:intergenic 15.0%
!!! TTTAACTGAATAGTTTATTT+TGG - chr4.3:2693865-2693884 MS.gene015803:intron 15.0%
!!! TTTTTTGAAATTGAAAATGA+AGG - chr4.3:2693947-2693966 MS.gene015803:intron 15.0%
!! AATTAAAAGGAATTCAATGA+GGG + chr4.3:2696197-2696216 None:intergenic 20.0%
!! ATCAAATATTATGAAATGAC+TGG - chr4.3:2696250-2696269 MS.gene015803:intron 20.0%
!! ATGTTAAAAGAAATGAAAAG+GGG + chr4.3:2693711-2693730 None:intergenic 20.0%
!! ATTGATATTACTGAAAGAAA+GGG - chr4.3:2695230-2695249 MS.gene015803:intron 20.0%
!! CAAAGGAAAAATAAAAATTG+AGG + chr4.3:2695077-2695096 None:intergenic 20.0%
!! CTATTTAAAAAAATGTGAAG+TGG + chr4.3:2696008-2696027 None:intergenic 20.0%
!! GAAGTAAAATAAAAGTTGTT+AGG - chr4.3:2695600-2695619 MS.gene015803:intron 20.0%
!! GTTCAAAATTTATTGTTGAT+GGG - chr4.3:2694960-2694979 MS.gene015803:intron 20.0%
!! TATTTGATCCAATCAAATAA+GGG - chr4.3:2696150-2696169 MS.gene015803:intron 20.0%
!! TGTTCAAAATTTATTGTTGA+TGG - chr4.3:2694959-2694978 MS.gene015803:intron 20.0%
!! TTCAAAATTTATTGTTGATG+GGG - chr4.3:2694961-2694980 MS.gene015803:intron 20.0%
!!! TTTTATTTTACTTCCATCTA+CGG + chr4.3:2695594-2695613 None:intergenic 20.0%
! AAATCAGTTAGGTTATTCAA+TGG + chr4.3:2693815-2693834 None:intergenic 25.0%
! ACAATAGTCAAGTTAGATTT+GGG - chr4.3:2695400-2695419 MS.gene015803:intron 25.0%
! CAATTAAAAGGAATTCAATG+AGG + chr4.3:2696198-2696217 None:intergenic 25.0%
! CCAAAGTTATATTAGGAATA+GGG - chr4.3:2695884-2695903 MS.gene015803:CDS 25.0%
! CCTAACTAAAAAAATCAGTT+AGG + chr4.3:2693826-2693845 None:intergenic 25.0%
! CGAAAATATGTAATTCACAA+TGG - chr4.3:2696304-2696323 MS.gene015803:intron 25.0%
! GATTGATATTACTGAAAGAA+AGG - chr4.3:2695229-2695248 MS.gene015803:intron 25.0%
! GTATTTGATCCAATCAAATA+AGG - chr4.3:2696149-2696168 MS.gene015803:intron 25.0%
! TATACGGAAAGTCAATTAAA+AGG + chr4.3:2696210-2696229 None:intergenic 25.0%
! TGTTCATTTGTCTAAATTTC+AGG - chr4.3:2695499-2695518 MS.gene015803:CDS 25.0%
! TGTTTGTACTAATATACAAG+TGG - chr4.3:2695105-2695124 MS.gene015803:CDS 25.0%
! TTTATAGAATTGAGAAATGC+TGG - chr4.3:2694835-2694854 MS.gene015803:intron 25.0%
!! GAACATTTTCATGGTAAATT+AGG + chr4.3:2696280-2696299 None:intergenic 25.0%
!! GTAATAATCCCTTATTTGAT+TGG + chr4.3:2696161-2696180 None:intergenic 25.0%
!! TCAACACTATGATAAACTTT+TGG + chr4.3:2694188-2694207 None:intergenic 25.0%
!! TGTTTATGGATTTGTTTATC+TGG - chr4.3:2694748-2694767 MS.gene015803:intron 25.0%
!! TTTCGAAAAGAACATTTTCA+TGG + chr4.3:2696289-2696308 None:intergenic 25.0%
!!! CCTAACTGATTTTTTTAGTT+AGG - chr4.3:2693823-2693842 MS.gene015803:intron 25.0%
!!! CTGAATAGTTTATTTTGGTT+AGG - chr4.3:2693870-2693889 MS.gene015803:intron 25.0%
!!! TCTGTCATGAATTTTGTTTA+TGG - chr4.3:2694734-2694753 MS.gene015803:intron 25.0%
!!! TGTTTGTTTCTGTTTTCAAT+AGG - chr4.3:2696561-2696580 MS.gene015803:CDS 25.0%
!!! TTTATTTTACTTCCATCTAC+GGG + chr4.3:2695593-2695612 None:intergenic 25.0%
AAACAAAAATTATGCCCACA+TGG + chr4.3:2693996-2694015 None:intergenic 30.0%
AAGGTTAATATTCATCACCA+AGG + chr4.3:2695684-2695703 None:intergenic 30.0%
AATATAACTTTGGCCAGAAA+AGG + chr4.3:2695877-2695896 None:intergenic 30.0%
AATTCAATGAGGGTTCAATT+TGG + chr4.3:2696187-2696206 None:intergenic 30.0%
AGTGTTTACTATGATGTCTA+TGG - chr4.3:2696332-2696351 MS.gene015803:intron 30.0%
AGTTGAATAAATGCAGTGAT+TGG + chr4.3:2694905-2694924 None:intergenic 30.0%
CAATAGTCAAGTTAGATTTG+GGG - chr4.3:2695401-2695420 MS.gene015803:intron 30.0%
CAATCCCAAAGCTAATAATA+AGG + chr4.3:2696081-2696100 None:intergenic 30.0%
CACAATAGTCAAGTTAGATT+TGG - chr4.3:2695399-2695418 MS.gene015803:intron 30.0%
CCCTATTCCTAATATAACTT+TGG + chr4.3:2695887-2695906 None:intergenic 30.0%
CCTGTAATTAAGGAGTTTAA+AGG - chr4.3:2695203-2695222 MS.gene015803:intron 30.0%
CCTTTAAACTCCTTAATTAC+AGG + chr4.3:2695206-2695225 None:intergenic 30.0%
GCCAAAGTTATATTAGGAAT+AGG - chr4.3:2695883-2695902 MS.gene015803:CDS 30.0%
GTGTTTACTATGATGTCTAT+GGG - chr4.3:2696333-2696352 MS.gene015803:intron 30.0%
TCATTTGTCTAAATTTCAGG+AGG - chr4.3:2695502-2695521 MS.gene015803:CDS 30.0%
TCTAAATTTCAGGAGGAAAA+GGG - chr4.3:2695509-2695528 MS.gene015803:CDS 30.0%
TGAAAGAAACTAACAGTAAC+AGG + chr4.3:2693684-2693703 None:intergenic 30.0%
TTCAAGTGAAAAAGTCTTGA+AGG - chr4.3:2696723-2696742 MS.gene015803:CDS 30.0%
TTGTGTTTATAACAGCTTCA+AGG + chr4.3:2695711-2695730 None:intergenic 30.0%
TTTGGGGAAAATTATTTGCT+AGG - chr4.3:2695417-2695436 MS.gene015803:intron 30.0%
! ATTGAAAGGTATATGATCCT+TGG - chr4.3:2695664-2695683 MS.gene015803:CDS 30.0%
! CTGTTTTCAATAGGTAAACA+GGG - chr4.3:2696570-2696589 MS.gene015803:CDS 30.0%
! TAAATGCAGTGATTGGTAAT+TGG + chr4.3:2694898-2694917 None:intergenic 30.0%
! TCTGTTTTCAATAGGTAAAC+AGG - chr4.3:2696569-2696588 MS.gene015803:CDS 30.0%
! TGTTTTGCTCTGCATTAAAA+AGG - chr4.3:2696534-2696553 MS.gene015803:CDS 30.0%
! TTTCTGGCCAAAGTTATATT+AGG - chr4.3:2695877-2695896 MS.gene015803:CDS 30.0%
!! AAATGAAGGTGATTTGTTGT+TGG - chr4.3:2693961-2693980 MS.gene015803:intron 30.0%
!! ACTAGCCTTATTATTAGCTT+TGG - chr4.3:2696073-2696092 MS.gene015803:CDS 30.0%
!! CTAGCCTTATTATTAGCTTT+GGG - chr4.3:2696074-2696093 MS.gene015803:CDS 30.0%
!! TTTCTTAGCTTTTTCCTCAT+CGG + chr4.3:2693535-2693554 None:intergenic 30.0%
!!! AAGTTTTGTTGCAAATCACA+AGG - chr4.3:2696396-2696415 MS.gene015803:intron 30.0%
!!! ACTTTTTCACTTGAATCACA+GGG + chr4.3:2696718-2696737 None:intergenic 30.0%
AACCTATAGAACAGCAAAGT+TGG + chr4.3:2695461-2695480 None:intergenic 35.0%
AACTCCTTAATTACAGGTAG+TGG + chr4.3:2695200-2695219 None:intergenic 35.0%
ACAAACAATAGACGCAGTAA+TGG - chr4.3:2693597-2693616 MS.gene015803:intron 35.0%
ACAGTTTGAGAACATGAATG+AGG - chr4.3:2694589-2694608 MS.gene015803:CDS 35.0%
AGAATTGAGGTTGGAATTAG+AGG + chr4.3:2693399-2693418 None:intergenic 35.0%
ATAACAGCTTCAAGGAAACA+AGG + chr4.3:2695703-2695722 None:intergenic 35.0%
ATAGGTAAACAGGGAAATGA+TGG - chr4.3:2696579-2696598 MS.gene015803:CDS 35.0%
ATCAAGGATAGGCTATTGAA+AGG - chr4.3:2695650-2695669 MS.gene015803:CDS 35.0%
ATCGGTCCAAAATGATCTTT+CGG + chr4.3:2694305-2694324 None:intergenic 35.0%
CAGTTAAAGATCGAATCGTT+GGG + chr4.3:2693853-2693872 None:intergenic 35.0%
CAGTTGTATAAGCAGTATCA+GGG + chr4.3:2694223-2694242 None:intergenic 35.0%
CTATGTCAGTTGAACAAGTA+GGG + chr4.3:2695959-2695978 None:intergenic 35.0%
CTATTGTTTGTTTCACCAGT+TGG + chr4.3:2693588-2693607 None:intergenic 35.0%
GTACAAACACACACATACAA+AGG + chr4.3:2695094-2695113 None:intergenic 35.0%
GTCTAAATTTCAGGAGGAAA+AGG - chr4.3:2695508-2695527 MS.gene015803:CDS 35.0%
GTTGGAATTAGAGGTAAACA+AGG + chr4.3:2693390-2693409 None:intergenic 35.0%
TAGGTAAACAGGGAAATGAT+GGG - chr4.3:2696580-2696599 MS.gene015803:CDS 35.0%
TCAGTTAAAGATCGAATCGT+TGG + chr4.3:2693854-2693873 None:intergenic 35.0%
TCAGTTGTATAAGCAGTATC+AGG + chr4.3:2694224-2694243 None:intergenic 35.0%
TCCAAAATGATCTTTCGGAA+TGG + chr4.3:2694300-2694319 None:intergenic 35.0%
TGAAGGGTTTCAGTTTCTAA+AGG + chr4.3:2693336-2693355 None:intergenic 35.0%
TGATTATCTTCAGAATCCAC+AGG - chr4.3:2695980-2695999 MS.gene015803:CDS 35.0%
TGTCCTTCAAAATCAAGGAT+AGG - chr4.3:2695639-2695658 MS.gene015803:CDS 35.0%
TGTTAGGCCAAAGACAAAAA+AGG - chr4.3:2695616-2695635 MS.gene015803:intron 35.0%
TTGCTCTGTAGTGATTTATC+AGG - chr4.3:2695161-2695180 MS.gene015803:intron 35.0%
TTTGCAGGTATTTGTTTGTG+AGG - chr4.3:2695009-2695028 MS.gene015803:intron 35.0%
! ACCATTCCGAAAGATCATTT+TGG - chr4.3:2694296-2694315 MS.gene015803:CDS 35.0%
! TAGCCTATCCTTGATTTTGA+AGG + chr4.3:2695645-2695664 None:intergenic 35.0%
! TGGATTTGTTTATCTGGTTC+AGG - chr4.3:2694754-2694773 MS.gene015803:intron 35.0%
!! AAAGGTGTCCTTCAAAATCA+AGG - chr4.3:2695634-2695653 MS.gene015803:intron 35.0%
!! TTCCAACTTTGCTGTTCTAT+AGG - chr4.3:2695456-2695475 MS.gene015803:intron 35.0%
!! TTTGAGAGATGGATTAAGCT+AGG - chr4.3:2694023-2694042 MS.gene015803:intron 35.0%
!!! AAGGACACCTTTTTTGTCTT+TGG + chr4.3:2695626-2695645 None:intergenic 35.0%
!!! GACTTTTTCACTTGAATCAC+AGG + chr4.3:2696719-2696738 None:intergenic 35.0%
!!! GTTTGAAGTGTTTTGAGAGA+TGG - chr4.3:2694012-2694031 MS.gene015803:intron 35.0%
AAAATGTGAAGTGGTACCTG+TGG + chr4.3:2695999-2696018 None:intergenic 40.0%
AAACGTAGGAAGCAAAGCAA+TGG - chr4.3:2696840-2696859 MS.gene015803:CDS 40.0%
AAAGAAAGGGTGATCCATCA+TGG - chr4.3:2695243-2695262 MS.gene015803:intron 40.0%
AAGAAACGACAAGAACTCGT+TGG - chr4.3:2693549-2693568 MS.gene015803:intron 40.0%
AAGAAAGGGTGATCCATCAT+GGG - chr4.3:2695244-2695263 MS.gene015803:intron 40.0%
AAGCAGGAGTGAGATATGAT+GGG - chr4.3:2694811-2694830 MS.gene015803:intron 40.0%
ACTAAAACCAACCTTGTCCA+TGG + chr4.3:2695053-2695072 None:intergenic 40.0%
ACTCTGCAAACACAATGACA+TGG + chr4.3:2695767-2695786 None:intergenic 40.0%
ACTGAGAGAGCAAAGAAAAC+AGG - chr4.3:2694239-2694258 MS.gene015803:CDS 40.0%
ATCTGAATCCTCCACAGAAA+CGG - chr4.3:2696761-2696780 MS.gene015803:CDS 40.0%
ATGGGGATCTTTCTGTGATA+GGG - chr4.3:2694978-2694997 MS.gene015803:intron 40.0%
CAATATATGTCGCAAGGTGT+TGG - chr4.3:2695794-2695813 MS.gene015803:CDS 40.0%
CAATGAGGGTTCAATTTGGA+GGG + chr4.3:2696183-2696202 None:intergenic 40.0%
CTTACATCAAAGTCCCATGA+TGG + chr4.3:2695260-2695279 None:intergenic 40.0%
CTTTCTGTGATAGGGTCATA+AGG - chr4.3:2694986-2695005 MS.gene015803:intron 40.0%
GAGAGCAAAGAAAACAGGAA+AGG - chr4.3:2694244-2694263 MS.gene015803:CDS 40.0%
GCTATGTCAGTTGAACAAGT+AGG + chr4.3:2695960-2695979 None:intergenic 40.0%
GGATCATTCTCAGCAACAAT+CGG + chr4.3:2694323-2694342 None:intergenic 40.0%
GTCATTGTGTTTGCAGAGTT+CGG - chr4.3:2695768-2695787 MS.gene015803:CDS 40.0%
TCAATGAGGGTTCAATTTGG+AGG + chr4.3:2696184-2696203 None:intergenic 40.0%
TCATGGGACTTTGATGTAAG+TGG - chr4.3:2695260-2695279 MS.gene015803:intron 40.0%
TCCAACCTCAATTCTCGATT+GGG - chr4.3:2693404-2693423 MS.gene015803:CDS 40.0%
TGAAAATCTCAAGCCAGATG+AGG - chr4.3:2696675-2696694 MS.gene015803:CDS 40.0%
TTCCAACCTCAATTCTCGAT+TGG - chr4.3:2693403-2693422 MS.gene015803:CDS 40.0%
TTGCTGAGAATGATCCAACA+AGG - chr4.3:2694327-2694346 MS.gene015803:CDS 40.0%
! AACGAACTTGCTCGAATTGT+AGG - chr4.3:2694048-2694067 MS.gene015803:intron 40.0%
! GCTGTTCTATAGGTTTTGCA+TGG - chr4.3:2695466-2695485 MS.gene015803:intron 40.0%
! GTTATCCTGTTCGTGTTGTT+AGG - chr4.3:2694636-2694655 MS.gene015803:intron 40.0%
!! CCTTAATTACAGGTAGTGGA+CGG + chr4.3:2695196-2695215 None:intergenic 40.0%
!! CTTAATTACAGGTAGTGGAC+GGG + chr4.3:2695195-2695214 None:intergenic 40.0%
!! GGTTCTTGTTGGTGATACAT+GGG - chr4.3:2694358-2694377 MS.gene015803:intron 40.0%
!! TTAATTACAGGTAGTGGACG+GGG + chr4.3:2695194-2695213 None:intergenic 40.0%
!! TTCACTGGCTTCTTACTTAG+AGG + chr4.3:2695560-2695579 None:intergenic 40.0%
AAACGACAAGAACTCGTTGG+TGG - chr4.3:2693552-2693571 MS.gene015803:intron 45.0%
AACCTTGTAGATCCCGTAGA+TGG - chr4.3:2695578-2695597 MS.gene015803:CDS 45.0%
AACGACAAGAACTCGTTGGT+GGG - chr4.3:2693553-2693572 MS.gene015803:intron 45.0%
AAGCAGAACGTTTCTCCTTG+TGG + chr4.3:2694782-2694801 None:intergenic 45.0%
AATGATCCAACAAGGAACCG+TGG - chr4.3:2694335-2694354 MS.gene015803:CDS 45.0%
ACAGACCTAACAACACGAAC+AGG + chr4.3:2694644-2694663 None:intergenic 45.0%
AGCAGAACGTTTCTCCTTGT+GGG + chr4.3:2694781-2694800 None:intergenic 45.0%
AGCAGGAGTGAGATATGATG+GGG - chr4.3:2694812-2694831 MS.gene015803:intron 45.0%
ATGATCCAACAAGGAACCGT+GGG - chr4.3:2694336-2694355 MS.gene015803:CDS 45.0%
ATTGCTGGTCAGAGTACACA+CGG - chr4.3:2694434-2694453 MS.gene015803:intron 45.0%
CATAGAATCACTCCAGCAAC+AGG - chr4.3:2696606-2696625 MS.gene015803:CDS 45.0%
CATATTGACGAGGCAAACGT+AGG - chr4.3:2696826-2696845 MS.gene015803:CDS 45.0%
CCGTCCACTACCTGTAATTA+AGG - chr4.3:2695193-2695212 MS.gene015803:intron 45.0%
CGGTTGCAATATATGTCGCA+AGG - chr4.3:2695788-2695807 MS.gene015803:CDS 45.0%
CTAACAGTAACAGGTCTCTC+AGG + chr4.3:2693675-2693694 None:intergenic 45.0%
CTCAGACTGAGTTGTCGAAA+AGG - chr4.3:2694614-2694633 MS.gene015803:intron 45.0%
GAAACGTTCTGCTTATGCAC+CGG - chr4.3:2694788-2694807 MS.gene015803:intron 45.0%
GAAAGGCAAATGCTTGCAGT+GGG - chr4.3:2694261-2694280 MS.gene015803:CDS 45.0%
GAAGCAGGAGTGAGATATGA+TGG - chr4.3:2694810-2694829 MS.gene015803:intron 45.0%
GACTGCAATTCCAGCGAAAA+TGG - chr4.3:2694070-2694089 MS.gene015803:intron 45.0%
GAGAAATGCTGGCGCAAAAT+TGG - chr4.3:2694846-2694865 MS.gene015803:intron 45.0%
GATAGGGTCATAAGGTTTGC+AGG - chr4.3:2694994-2695013 MS.gene015803:intron 45.0%
GATGGGGATCTTTCTGTGAT+AGG - chr4.3:2694977-2694996 MS.gene015803:intron 45.0%
GCATTCCCAATCGAGAATTG+AGG + chr4.3:2693412-2693431 None:intergenic 45.0%
GCTCAATCTGTTGCACTTTC+GGG - chr4.3:2694458-2694477 MS.gene015803:intron 45.0%
GGCTCAATCTGTTGCACTTT+CGG - chr4.3:2694457-2694476 MS.gene015803:intron 45.0%
GGTAAACAAGGAACATGCCA+CGG + chr4.3:2693378-2693397 None:intergenic 45.0%
TATCACCAACAAGAACCCCA+CGG + chr4.3:2694355-2694374 None:intergenic 45.0%
TCATATCTCACTCCTGCTTC+CGG + chr4.3:2694810-2694829 None:intergenic 45.0%
TCCCAATCGAGAATTGAGGT+TGG + chr4.3:2693408-2693427 None:intergenic 45.0%
TGATACATGGGAGGATAGGA+TGG - chr4.3:2694370-2694389 MS.gene015803:intron 45.0%
TGCGCATGTTCGACAATGAA+GGG + chr4.3:2693352-2693371 None:intergenic 45.0%
TTCCATCTACGGGATCTACA+AGG + chr4.3:2695583-2695602 None:intergenic 45.0%
TTGCAGAAGTTGTGAGCACA+AGG + chr4.3:2695837-2695856 None:intergenic 45.0%
TTGCGCATGTTCGACAATGA+AGG + chr4.3:2693353-2693372 None:intergenic 45.0%
! AAGCGAAGCATCATTCTCGA+TGG + chr4.3:2693511-2693530 None:intergenic 45.0%
! AATGGCGGAAACTAGATCTC+CGG + chr4.3:2693484-2693503 None:intergenic 45.0%
! ACTGGCTTCTTACTTAGAGG+TGG + chr4.3:2695557-2695576 None:intergenic 45.0%
! GGCTTGCTTGATATCTTCGA+CGG - chr4.3:2693618-2693637 MS.gene015803:intron 45.0%
! GTTGGTTTCAGACACCATGT+GGG - chr4.3:2693979-2693998 MS.gene015803:intron 45.0%
! TTGGTGATACATGGGAGGAT+AGG - chr4.3:2694366-2694385 MS.gene015803:intron 45.0%
!! ATAGGATGGACTGTAGGCAA+TGG - chr4.3:2694384-2694403 MS.gene015803:intron 45.0%
!! CGCATTGATTCGTGGATTAC+TGG + chr4.3:2694096-2694115 None:intergenic 45.0%
!! GGGTTCTTGTTGGTGATACA+TGG - chr4.3:2694357-2694376 MS.gene015803:intron 45.0%
!! TAGGATGGACTGTAGGCAAT+GGG - chr4.3:2694385-2694404 MS.gene015803:intron 45.0%
!! TCTTGTTGGTGATACATGGG+AGG - chr4.3:2694361-2694380 MS.gene015803:intron 45.0%
!! TGTTGGTTTCAGACACCATG+TGG - chr4.3:2693978-2693997 MS.gene015803:intron 45.0%
!! AGAATAATAATAATTATATA+CGG + chr4.3:2696226-2696245 None:intergenic 5.0%
ACACGCCATGCAAACACCAT+CGG + chr4.3:2693304-2693323 None:intergenic 50.0%
ACGACAAGAACTCGTTGGTG+GGG - chr4.3:2693554-2693573 MS.gene015803:intron 50.0%
ACGGGATCTACAAGGTTCAC+TGG + chr4.3:2695575-2695594 None:intergenic 50.0%
ACTAGATCTCCGGCGATAGA+TGG + chr4.3:2693474-2693493 None:intergenic 50.0%
ATCATTCTCGATGGCGCGAA+TGG + chr4.3:2693502-2693521 None:intergenic 50.0%
CAACTTCTGCAAAGCTTGCC+TGG - chr4.3:2695845-2695864 MS.gene015803:CDS 50.0%
CAATCTGTTGCACTTTCGGG+TGG - chr4.3:2694461-2694480 MS.gene015803:intron 50.0%
CACGGAGGAACATATTGACG+AGG - chr4.3:2696816-2696835 MS.gene015803:CDS 50.0%
CGGTGAGTGGTTCCTTTACA+CGG - chr4.3:2694505-2694524 MS.gene015803:CDS 50.0%
CTCAGGCAAATGCATGCAGA+AGG + chr4.3:2693658-2693677 None:intergenic 50.0%
GAAACCTCTGTCTCCTCATC+TGG + chr4.3:2696691-2696710 None:intergenic 50.0%
GATTGCGATTCGTATGGCCA+AGG - chr4.3:2694124-2694143 MS.gene015803:intron 50.0%
GGAAAGGCAAATGCTTGCAG+TGG - chr4.3:2694260-2694279 MS.gene015803:CDS 50.0%
GGCTTCTTACTTAGAGGTGG+AGG + chr4.3:2695554-2695573 None:intergenic 50.0%
GGTGAGTGGTTCCTTTACAC+GGG - chr4.3:2694506-2694525 MS.gene015803:CDS 50.0%
GGTTCCTTTACACGGGAAGT+GGG - chr4.3:2694513-2694532 MS.gene015803:CDS 50.0%
GTTCCTTTACACGGGAAGTG+GGG - chr4.3:2694514-2694533 MS.gene015803:CDS 50.0%
GTTGGCGATTGCGATTCGTA+TGG - chr4.3:2694118-2694137 MS.gene015803:intron 50.0%
TACGTCGATGATGAGGACCA+CGG - chr4.3:2694485-2694504 MS.gene015803:CDS 50.0%
TCCACGAATCAATGCGCAGT+TGG - chr4.3:2694100-2694119 MS.gene015803:intron 50.0%
TGAATCCTCCACAGAAACGG+AGG - chr4.3:2696764-2696783 MS.gene015803:CDS 50.0%
TGATCCAACAAGGAACCGTG+GGG - chr4.3:2694337-2694356 MS.gene015803:CDS 50.0%
TGATGCTTCGCTTACCGATG+AGG - chr4.3:2693518-2693537 MS.gene015803:CDS 50.0%
TGGTTCCTTTACACGGGAAG+TGG - chr4.3:2694512-2694531 MS.gene015803:CDS 50.0%
TGTAAAGGAACCACTCACCG+TGG + chr4.3:2694505-2694524 None:intergenic 50.0%
TTCAGGAGGAAAAGGGCTGT+TGG - chr4.3:2695516-2695535 MS.gene015803:CDS 50.0%
TTCCTTTACACGGGAAGTGG+GGG - chr4.3:2694515-2694534 MS.gene015803:CDS 50.0%
TTCTGCAAAGCTTGCCTGGA+GGG - chr4.3:2695849-2695868 MS.gene015803:CDS 50.0%
TTGCTGGTCAGAGTACACAC+GGG - chr4.3:2694435-2694454 MS.gene015803:intron 50.0%
! AGGAAAAGGGCTGTTGGTTG+TGG - chr4.3:2695522-2695541 MS.gene015803:CDS 50.0%
! AGGAATAGGGCATCTCAGAG+TGG - chr4.3:2695897-2695916 MS.gene015803:CDS 50.0%
! TATCTGGTTCAGGTCCCACA+AGG - chr4.3:2694764-2694783 MS.gene015803:intron 50.0%
! TCTTTTGTGTCCGCAAAGCG+CGG + chr4.3:2695923-2695942 None:intergenic 50.0%
!! AGGATGGACTGTAGGCAATG+GGG - chr4.3:2694386-2694405 MS.gene015803:intron 50.0%
!! GGATTACTGGCCATTTTCGC+TGG + chr4.3:2694083-2694102 None:intergenic 50.0%
AAGGTAGCAAGATCGCAGGG+TGG - chr4.3:2694143-2694162 MS.gene015803:intron 55.0%
ACCAACCTTGTCCATGGAGC+TGG + chr4.3:2695047-2695066 None:intergenic 55.0%
ACCAGCAATGCCAGCCACAT+GGG + chr4.3:2694423-2694442 None:intergenic 55.0%
ACCCTGCGATCTTGCTACCT+TGG + chr4.3:2694144-2694163 None:intergenic 55.0%
AGAACCCCACGGTTCCTTGT+TGG + chr4.3:2694344-2694363 None:intergenic 55.0%
AGGAACCGTGGGGTTCTTGT+TGG - chr4.3:2694347-2694366 MS.gene015803:intron 55.0%
ATGAGCCAGCTCCATGGACA+AGG - chr4.3:2695039-2695058 MS.gene015803:intron 55.0%
ATGATGAGGACCACGGTGAG+TGG - chr4.3:2694492-2694511 MS.gene015803:CDS 55.0%
ATTCTCGATGGCGCGAATGG+CGG + chr4.3:2693499-2693518 None:intergenic 55.0%
CAAACACCATCGGCGTCACA+AGG + chr4.3:2693294-2693313 None:intergenic 55.0%
CAAGCCAGATGAGGAGACAG+AGG - chr4.3:2696684-2696703 MS.gene015803:CDS 55.0%
CCAGCAACAGGCTGAACAGA+TGG - chr4.3:2696618-2696637 MS.gene015803:CDS 55.0%
CCATCTGTTCAGCCTGTTGC+TGG + chr4.3:2696621-2696640 None:intergenic 55.0%
CCTCCACAGAAACGGAGGAA+AGG - chr4.3:2696769-2696788 MS.gene015803:CDS 55.0%
CCTTTCCTCCGTTTCTGTGG+AGG + chr4.3:2696772-2696791 None:intergenic 55.0%
CTTCTGCAAAGCTTGCCTGG+AGG - chr4.3:2695848-2695867 MS.gene015803:CDS 55.0%
GATTGTTCTCAACCCGTCGC+CGG - chr4.3:2693435-2693454 MS.gene015803:CDS 55.0%
GCAACAGGCTGAACAGATGG+AGG - chr4.3:2696621-2696640 MS.gene015803:CDS 55.0%
GCACCTTTCCTCCGTTTCTG+TGG + chr4.3:2696775-2696794 None:intergenic 55.0%
GCCAAGGTAGCAAGATCGCA+GGG - chr4.3:2694140-2694159 MS.gene015803:intron 55.0%
GGGTGGTTACGTCGATGATG+AGG - chr4.3:2694478-2694497 MS.gene015803:CDS 55.0%
GGTGGGGCTTCTAATCCAAC+TGG - chr4.3:2693570-2693589 MS.gene015803:intron 55.0%
GTGACAATGAGCCAGCTCCA+TGG - chr4.3:2695033-2695052 MS.gene015803:intron 55.0%
TCCTTTACACGGGAAGTGGG+GGG - chr4.3:2694516-2694535 MS.gene015803:CDS 55.0%
TCTGCTTATGCACCGGAAGC+AGG - chr4.3:2694795-2694814 MS.gene015803:intron 55.0%
TGACGCCGATGGTGTTTGCA+TGG - chr4.3:2693296-2693315 MS.gene015803:CDS 55.0%
TGAGCACAAGGCGTAGTGAG+AGG + chr4.3:2695825-2695844 None:intergenic 55.0%
TGCTGGTCAGAGTACACACG+GGG - chr4.3:2694436-2694455 MS.gene015803:intron 55.0%
! CAGAAACGGAGGAAAGGTGC+TGG - chr4.3:2696775-2696794 MS.gene015803:CDS 55.0%
!! AAACGGAGGAAAGGTGCTGG+TGG - chr4.3:2696778-2696797 MS.gene015803:CDS 55.0%
!! GCCAACTGCGCATTGATTCG+TGG + chr4.3:2694104-2694123 None:intergenic 55.0%
!! GGCGACGGGTTGAGAACAAT+CGG + chr4.3:2693436-2693455 None:intergenic 55.0%
!! GGGAGGATAGGATGGACTGT+AGG - chr4.3:2694378-2694397 MS.gene015803:intron 55.0%
!! TTACAGGTAGTGGACGGGGA+CGG + chr4.3:2695190-2695209 None:intergenic 55.0%
AGATGGAGCAGCGGAATCGC+CGG + chr4.3:2693457-2693476 None:intergenic 60.0%
AGTGGGGGGAGAGATCTCAG+CGG - chr4.3:2694530-2694549 MS.gene015803:CDS 60.0%
CAGCTACCTTGTGACGCCGA+TGG - chr4.3:2693285-2693304 MS.gene015803:CDS 60.0%
CCAGCAATGCCAGCCACATG+GGG + chr4.3:2694422-2694441 None:intergenic 60.0%
GACCAGCAATGCCAGCCACA+TGG + chr4.3:2694424-2694443 None:intergenic 60.0%
GCAAGATCGCAGGGTGGTGT+TGG - chr4.3:2694149-2694168 MS.gene015803:CDS 60.0%
GCCAGCTCCATGGACAAGGT+TGG - chr4.3:2695043-2695062 MS.gene015803:intron 60.0%
GCTCACTTTCCCCATGTGGC+TGG - chr4.3:2694410-2694429 MS.gene015803:intron 60.0%
GGCCAAGGTAGCAAGATCGC+AGG - chr4.3:2694139-2694158 MS.gene015803:intron 60.0%
GGGAGCTCACTTTCCCCATG+TGG - chr4.3:2694406-2694425 MS.gene015803:intron 60.0%
GTCGAACATGCGCAACTCCG+TGG - chr4.3:2693358-2693377 MS.gene015803:CDS 60.0%
TCCCCCCACTTCCCGTGTAA+AGG + chr4.3:2694520-2694539 None:intergenic 60.0%
TCCGCTGCTCCATCTATCGC+CGG - chr4.3:2693462-2693481 MS.gene015803:CDS 60.0%
TCCGGCGATAGATGGAGCAG+CGG + chr4.3:2693466-2693485 None:intergenic 60.0%
! AGATCGCAGGGTGGTGTTGG+AGG - chr4.3:2694152-2694171 MS.gene015803:CDS 60.0%
!! GAGGAAAGGTGCTGGTGGCA+AGG - chr4.3:2696783-2696802 MS.gene015803:CDS 60.0%
!!! TGCCTGGAGGGTGCCTTTTC+TGG - chr4.3:2695861-2695880 MS.gene015803:CDS 60.0%
CCCCATGTGGCTGGCATTGC+TGG - chr4.3:2694419-2694438 MS.gene015803:intron 65.0%
CTCAGAGTGGCCGCGCTTTG+CGG - chr4.3:2695910-2695929 MS.gene015803:CDS 65.0%
TGGCAAGGCTGCGGCGAACA+CGG - chr4.3:2696798-2696817 MS.gene015803:CDS 65.0%
!! AGGTGCTGGTGGCAAGGCTG+CGG - chr4.3:2696789-2696808 MS.gene015803:CDS 65.0%
!! GGCCAGAAAAGGCACCCTCC+AGG + chr4.3:2695866-2695885 None:intergenic 65.0%
AGCAGCGGAATCGCCGGCGA+CGG + chr4.3:2693451-2693470 None:intergenic 70.0%
CAAGGCTGCGGCGAACACGG+AGG - chr4.3:2696801-2696820 MS.gene015803:CDS 70.0%
GCAGCGGAATCGCCGGCGAC+GGG + chr4.3:2693450-2693469 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 2693276 2696873 2693276 ID=MS.gene015803
chr4.3 mRNA 2693276 2696873 2693276 ID=MS.gene015803.t1;Parent=MS.gene015803
chr4.3 exon 2696460 2696873 2696460 ID=MS.gene015803.t1.exon1;Parent=MS.gene015803.t1
chr4.3 CDS 2696460 2696873 2696460 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2695639 2696159 2695639 ID=MS.gene015803.t1.exon2;Parent=MS.gene015803.t1
chr4.3 CDS 2695639 2696159 2695639 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2695492 2695608 2695492 ID=MS.gene015803.t1.exon3;Parent=MS.gene015803.t1
chr4.3 CDS 2695492 2695608 2695492 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2695274 2695373 2695274 ID=MS.gene015803.t1.exon4;Parent=MS.gene015803.t1
chr4.3 CDS 2695274 2695373 2695274 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2695089 2695150 2695089 ID=MS.gene015803.t1.exon5;Parent=MS.gene015803.t1
chr4.3 CDS 2695089 2695150 2695089 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2694875 2694977 2694875 ID=MS.gene015803.t1.exon6;Parent=MS.gene015803.t1
chr4.3 CDS 2694875 2694977 2694875 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2694478 2694628 2694478 ID=MS.gene015803.t1.exon7;Parent=MS.gene015803.t1
chr4.3 CDS 2694478 2694628 2694478 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2694148 2694365 2694148 ID=MS.gene015803.t1.exon8;Parent=MS.gene015803.t1
chr4.3 CDS 2694148 2694365 2694148 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
chr4.3 exon 2693276 2693566 2693276 ID=MS.gene015803.t1.exon9;Parent=MS.gene015803.t1
chr4.3 CDS 2693276 2693566 2693276 ID=cds.MS.gene015803.t1;Parent=MS.gene015803.t1
Gene Sequence

>MS.gene015803

ATGTCGAAGCAGCTACCTTGTGACGCCGATGGTGTTTGCATGGCGTGTAAAACGAAGCCTTTAGAAACTGAAACCCTTCATTGTCGAACATGCGCAACTCCGTGGCATGTTCCTTGTTTACCTCTAATTCCAACCTCAATTCTCGATTGGGAATGCTCCGATTGTTCTCAACCCGTCGCCGGCGATTCCGCTGCTCCATCTATCGCCGGAGATCTAGTTTCCGCCATTCGCGCCATCGAGAATGATGCTTCGCTTACCGATGAGGAAAAAGCTAAGAAACGACAAGAACTCGTTGGTGGGGCTTCTAATCCAACTGGTGAAACAAACAATAGACGCAGTAATGGCTTGCTTGATATCTTCGACGGTAGTCTCAACTGTTCCTTCTGCATGCATTTGCCTGAGAGACCTGTTACTGTTAGTTTCTTTCATTTTCCCCTTTTCATTTCTTTTAACATTTTAATTTTATTACAATTATTATTTGTATTATTGATTCTCTGATGATTTTTAGTGACTTTGTTTTTTAAGATCGAATCGATCCATTGAATAACCTAACTGATTTTTTTAGTTAGGTTATCCCAACGATTCGATCTTTAACTGAATAGTTTATTTTGGTTAGGTTTTCTGAACGATTCGACCTTAACTTAACTTATTTTTGTTTTGTTAAATTATTATTTTTTGAAATTGAAAATGAAGGTGATTTGTTGTTGGTTTCAGACACCATGTGGGCATAATTTTTGTTTGAAGTGTTTTGAGAGATGGATTAAGCTAGGAAAACGAACTTGCTCGAATTGTAGGACTGCAATTCCAGCGAAAATGGCCAGTAATCCACGAATCAATGCGCAGTTGGCGATTGCGATTCGTATGGCCAAGGTAGCAAGATCGCAGGGTGGTGTTGGAGGAAGTAGCGTTCCAAAAGTTTATCATAGTGTTGACAATGATGAGCGCCCTGATACTGCTTATACAACTGAGAGAGCAAAGAAAACAGGAAAGGCAAATGCTTGCAGTGGGAAGATATTTGTGACCATTCCGAAAGATCATTTTGGACCGATTGTTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGACTGTAGGCAATGGGGAGCTCACTTTCCCCATGTGGCTGGCATTGCTGGTCAGAGTACACACGGGGCTCAATCTGTTGCACTTTCGGGTGGTTACGTCGATGATGAGGACCACGGTGAGTGGTTCCTTTACACGGGAAGTGGGGGGAGAGATCTCAGCGGTAATAAACGTACAAACAAAAATCAGTCTTTTGATCAACAGTTTGAGAACATGAATGAGGCTCTCAGACTGAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCTGTTTTTATTGATTATGAATTCAATTCAATTGATTGATTCCTAATTTGTTTAATATCAAATTCAATGTGATGTTCTGTCATGAATTTTGTTTATGGATTTGTTTATCTGGTTCAGGTCCCACAAGGAGAAACGTTCTGCTTATGCACCGGAAGCAGGAGTGAGATATGATGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAATTGGAATACAAGTAAGTTTCATTCTTGTTTCCAATTACCAATCACTGCATTTATTCAACTAAGTACATTGAGTTATATCTAGTTGATTATCAATTGTTCAAAATTTATTGTTGATGGGGATCTTTCTGTGATAGGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGGTTGGTTTTAGTTCCTCAATTTTTATTTTTCCTTTGTATGTGTGTGTTTGTACTAATATACAAGTGGAAGTGTAGAACTTGATCACTTGAATTCATTTTGTTGCTCTGTAGTGATTTATCAGGAGACCGTCCCCGTCCACTACCTGTAATTAAGGAGTTTAAAGGTGCGATTGATATTACTGAAAGAAAGGGTGATCCATCATGGGACTTTGATGTAAGTGGTGTGTCTACTGATCTGCTTTTCTTAGATTTCTTGAAGTGTTTCTTTCACTTTTGTTTATTACATTTCTTCTTTGTTTTCTAGACATTATTTTTGTACTCTTTTAAGATATGATGATCACAATAGTCAAGTTAGATTTGGGGAAAATTATTTGCTAGGCAAATGTTATTCTTTTTTCCAACTTTGCTGTTCTATAGGTTTTGCATGGACTCTCAATATGTTCATTTGTCTAAATTTCAGGAGGAAAAGGGCTGTTGGTTGTGGAAGAAGCCTCCACCTCTAAGTAAGAAGCCAGTGAACCTTGTAGATCCCGTAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAGACAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGGTATATGATCCTTGGTGATGAATATTAACCTTGTTTCCTTGAAGCTGTTATAAACACAATATATAGTATGTTCAATTAATACGGTGTTGCATCCATGTCATTGTGTTTGCAGAGTTCGGTTGCAATATATGTCGCAAGGTGTTGGCTTCGCCTCTCACTACGCCTTGTGCTCACAACTTCTGCAAAGCTTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATTAGGAATAGGGCATCTCAGAGTGGCCGCGCTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTATCTTCAGAATCCACAGGTACCACTTCACATTTTTTTAAATAGATGTTTATGAAAAGAACTGCTTGATTTCACTTTGAAGTGAGTGTTACTAGCCTTATTATTAGCTTTGGGATTGCATTGCTTATTTCTAACGTGATCAATAATTATATTGTTATCAGGACTTGTATTTGATCCAATCAAATAAGGGATTATTACCCTCCAAATTGAACCCTCATTGAATTCCTTTTAATTGACTTTCCGTATATAATTATTATTATTCTCCAAATCAAATATTATGAAATGACTGGTATTCCTAATTTACCATGAAAATGTTCTTTTCGAAAATATGTAATTCACAATGGAGTTTAGTGTTTACTATGATGTCTATGGGTACTTAATATTGACAGTGTCTATCTATTTGATAATGTTTTAAGTTTTGTTGCAAATCACAAGGCTCTTAATAATATTGACACTGTTTATGTATCTGATAATGTTCAAAGTTTTGTTTCAAGTATTTAGTGAAGTAAGCTATTGACTTTTGCAATTGCAATTTATTCAATATGAAGCTTTGTTTTGCTCTGCATTAAAAAGGTCTTTGTTTGTTTCTGTTTTCAATAGGTAAACAGGGAAATGATGGGTGTCATAGAATCACTCCAGCAACAGGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGCAAAAAGTGATGAAAATCTCAAGCCAGATGAGGAGACAGAGGTTTCAAAGCCCTGTGATTCAAGTGAAAAAGTCTTGAAGGAAATTAACAAGAATGATCTGAATCCTCCACAGAAACGGAGGAAAGGTGCTGGTGGCAAGGCTGCGGCGAACACGGAGGAACATATTGACGAGGCAAACGTAGGAAGCAAAGCAATGGCTTTAAACTAG

Protein sequence

>MS.gene015803.t1

MSKQLPCDADGVCMACKTKPLETETLHCRTCATPWHVPCLPLIPTSILDWECSDCSQPVAGDSAAPSIAGDLVSAIRAIENDASLTDEEKAKKRQELVGGASNPTGETNNRRSNGLLDIFDGSLNCSFCMHLPERPVTTPCGHNFCLKCFERWIKLGKRTCSNCRTAIPAKMASNPRINAQLAIAIRMAKVARSQGGVGGSSVPKVYHSVDNDERPDTAYTTERAKKTGKANACSGKIFVTIPKDHFGPIVAENDPTRNRGVLVGDTWEDRMDCRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSAYAPEAGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPVIKEFKGAIDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNLVDPVDGSKIKVVRPKTKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRASQSGRALRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQQQAEQMEESSEESSAKSDENLKPDEETEVSKPCDSSEKVLKEINKNDLNPPQKRRKGAGGKAAANTEEHIDEANVGSKAMALN