Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05870.t1 | XP_003630722.1 | 95.2 | 668 | 22 | 1 | 1 | 658 | 1 | 668 | 0.00E+00 | 1275 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05870.t1 | Q8VYZ0 | 61.4 | 601 | 196 | 9 | 4 | 575 | 6 | 599 | 7.6e-211 | 734.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05870.t1 | G7L7G5 | 95.2 | 668 | 22 | 1 | 1 | 658 | 1 | 668 | 0.0e+00 | 1275.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene05870 | 0.813449 | 2.55E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene05870 | 0.82104 | 4.99E-53 | -1.69E-46 |
| MS.gene052732 | MS.gene05870 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene05870 | 0.82487 | 6.39E-54 | -1.69E-46 |
| MS.gene053171 | MS.gene05870 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene054554 | MS.gene05870 | 0.812526 | 4.06E-51 | -1.69E-46 |
| MS.gene054643 | MS.gene05870 | 0.807426 | 5.08E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene05870 | 0.842324 | 2.77E-58 | -1.69E-46 |
| MS.gene05870 | MS.gene061006 | 0.827987 | 1.15E-54 | -1.69E-46 |
| MS.gene05870 | MS.gene061805 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene064161 | 0.809243 | 2.08E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene064737 | 0.816898 | 4.36E-52 | -1.69E-46 |
| MS.gene05870 | MS.gene066477 | 0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene067773 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene071652 | 0.8047 | 1.91E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene072641 | 0.822938 | 1.81E-53 | -1.69E-46 |
| MS.gene05870 | MS.gene074289 | 0.81328 | 2.77E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene08769 | 0.801202 | 1.01E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene09087 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene09947 | 0.812172 | 4.85E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene23766 | 0.843186 | 1.64E-58 | -1.69E-46 |
| MS.gene05870 | MS.gene23792 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene24699 | 0.817772 | 2.77E-52 | -1.69E-46 |
| MS.gene05870 | MS.gene26801 | 0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene27222 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene28632 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene28979 | 0.801473 | 8.86E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene30201 | 0.819818 | 9.51E-53 | -1.69E-46 |
| MS.gene05870 | MS.gene31203 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene31204 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene32685 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene32853 | 0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene36285 | 0.830461 | 2.90E-55 | -1.69E-46 |
| MS.gene05870 | MS.gene38302 | 0.80778 | 4.28E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene39603 | 0.809652 | 1.70E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene41692 | 0.814716 | 1.34E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene42377 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene46302 | 0.824336 | 8.53E-54 | -1.69E-46 |
| MS.gene05870 | MS.gene47498 | 0.844357 | 7.95E-59 | -1.69E-46 |
| MS.gene05870 | MS.gene49883 | 0.801548 | 8.55E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene52333 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene55623 | 0.830739 | 2.48E-55 | -1.69E-46 |
| MS.gene05870 | MS.gene55904 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene56476 | 0.825136 | 5.53E-54 | -1.69E-46 |
| MS.gene05870 | MS.gene57320 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene60598 | 0.803006 | 4.28E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene63853 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene65433 | 0.810022 | 1.42E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene66156 | 0.840175 | 1.02E-57 | -1.69E-46 |
| MS.gene05870 | MS.gene66159 | 0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene05870 | MS.gene66803 | 0.823758 | 1.17E-53 | -1.69E-46 |
| MS.gene05870 | MS.gene67356 | 0.803381 | 3.58E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene67881 | 0.823867 | 1.10E-53 | -1.69E-46 |
| MS.gene05870 | MS.gene68060 | 0.840078 | 1.08E-57 | -1.69E-46 |
| MS.gene05870 | MS.gene68106 | 0.841623 | 4.25E-58 | -1.69E-46 |
| MS.gene05870 | MS.gene68107 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene68418 | 0.836865 | 7.28E-57 | -1.69E-46 |
| MS.gene05870 | MS.gene68420 | 0.837839 | 4.10E-57 | -1.69E-46 |
| MS.gene05870 | MS.gene69422 | 0.840531 | 8.22E-58 | -1.69E-46 |
| MS.gene05870 | MS.gene70898 | 0.808159 | 3.55E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene72136 | 0.813935 | 1.99E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene72170 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene75604 | 0.812722 | 3.67E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene81280 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene82375 | 0.81675 | 4.71E-52 | -1.69E-46 |
| MS.gene05870 | MS.gene82546 | 0.813467 | 2.52E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene82989 | 0.811794 | 5.86E-51 | -1.69E-46 |
| MS.gene05870 | MS.gene86064 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene89100 | 0.817859 | 2.65E-52 | -1.69E-46 |
| MS.gene05870 | MS.gene90636 | 0.813187 | 2.91E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066358 | MS.gene05870 | PPI |
| MS.gene066359 | MS.gene05870 | PPI |
| MS.gene05870 | MS.gene87801 | PPI |
| MS.gene034581 | MS.gene05870 | PPI |
| MS.gene015803 | MS.gene05870 | PPI |
| MS.gene87801 | MS.gene05870 | PPI |
| MS.gene39153 | MS.gene05870 | PPI |
| MS.gene38118 | MS.gene05870 | PPI |
| MS.gene049074 | MS.gene05870 | PPI |
| MS.gene017484 | MS.gene05870 | PPI |
| MS.gene020984 | MS.gene05870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05870.t1 | MTR_8g102580 | 95.359 | 668 | 21 | 1 | 1 | 658 | 1 | 668 | 0.0 | 1321 |
| MS.gene05870.t1 | MTR_5g098680 | 79.882 | 676 | 116 | 6 | 1 | 658 | 5 | 678 | 0.0 | 1059 |
| MS.gene05870.t1 | MTR_3g114910 | 59.821 | 448 | 114 | 9 | 20 | 467 | 12 | 393 | 0.0 | 529 |
| MS.gene05870.t1 | MTR_6g053210 | 42.522 | 341 | 72 | 7 | 45 | 384 | 8 | 225 | 3.33e-69 | 228 |
| MS.gene05870.t1 | MTR_6g053210 | 65.385 | 78 | 27 | 0 | 581 | 658 | 233 | 310 | 1.69e-22 | 99.0 |
| MS.gene05870.t1 | MTR_6g061270 | 31.183 | 186 | 108 | 6 | 261 | 428 | 223 | 406 | 2.33e-14 | 77.0 |
| MS.gene05870.t1 | MTR_1g035420 | 33.333 | 150 | 89 | 3 | 261 | 399 | 217 | 366 | 2.87e-14 | 76.6 |
| MS.gene05870.t1 | MTR_6g061200 | 31.183 | 186 | 108 | 6 | 261 | 428 | 223 | 406 | 5.40e-14 | 75.9 |
| MS.gene05870.t1 | MTR_8g070070 | 34.641 | 153 | 86 | 4 | 261 | 399 | 325 | 477 | 1.19e-12 | 71.6 |
| MS.gene05870.t1 | MTR_8g070075 | 32.026 | 153 | 90 | 3 | 261 | 399 | 318 | 470 | 2.06e-11 | 67.8 |
| MS.gene05870.t1 | MTR_8g071030 | 33.987 | 153 | 87 | 4 | 261 | 399 | 305 | 457 | 2.23e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05870.t1 | AT1G57820 | 61.270 | 630 | 208 | 12 | 4 | 606 | 6 | 626 | 0.0 | 758 |
| MS.gene05870.t1 | AT1G57820 | 60.979 | 633 | 208 | 12 | 4 | 606 | 6 | 629 | 0.0 | 758 |
| MS.gene05870.t1 | AT1G57820 | 60.979 | 633 | 208 | 12 | 4 | 606 | 6 | 629 | 0.0 | 758 |
| MS.gene05870.t1 | AT5G39550 | 58.678 | 605 | 207 | 11 | 1 | 584 | 3 | 585 | 0.0 | 702 |
| MS.gene05870.t1 | AT1G66040 | 59.631 | 597 | 201 | 11 | 1 | 576 | 3 | 580 | 0.0 | 694 |
| MS.gene05870.t1 | AT1G66050 | 59.631 | 597 | 201 | 11 | 1 | 576 | 3 | 580 | 0.0 | 694 |
| MS.gene05870.t1 | AT1G57800 | 52.799 | 661 | 246 | 15 | 2 | 605 | 4 | 655 | 0.0 | 665 |
| MS.gene05870.t1 | AT1G57800 | 52.424 | 660 | 246 | 15 | 2 | 605 | 4 | 651 | 0.0 | 657 |
| MS.gene05870.t1 | AT4G08590 | 50.759 | 461 | 180 | 12 | 4 | 452 | 6 | 431 | 3.56e-148 | 438 |
| MS.gene05870.t1 | AT4G08590 | 50.870 | 460 | 180 | 12 | 4 | 452 | 6 | 430 | 8.36e-148 | 437 |
| MS.gene05870.t1 | AT4G08590 | 50.446 | 448 | 175 | 12 | 4 | 439 | 6 | 418 | 1.24e-141 | 420 |
| MS.gene05870.t1 | AT4G08590 | 49.029 | 412 | 163 | 12 | 4 | 403 | 6 | 382 | 2.33e-123 | 372 |
| MS.gene05870.t1 | AT4G08590 | 47.208 | 394 | 162 | 11 | 4 | 386 | 6 | 364 | 4.53e-111 | 339 |
| MS.gene05870.t1 | AT4G08590 | 47.208 | 394 | 162 | 11 | 4 | 386 | 6 | 364 | 4.53e-111 | 339 |
| MS.gene05870.t1 | AT2G35160 | 35.032 | 157 | 87 | 6 | 261 | 403 | 333 | 488 | 1.31e-12 | 71.6 |
| MS.gene05870.t1 | AT2G35160 | 35.032 | 157 | 87 | 6 | 261 | 403 | 369 | 524 | 1.48e-12 | 71.6 |
| MS.gene05870.t1 | AT2G35160 | 35.032 | 157 | 87 | 6 | 261 | 403 | 369 | 524 | 1.48e-12 | 71.6 |
| MS.gene05870.t1 | AT2G35160 | 35.032 | 157 | 87 | 6 | 261 | 403 | 369 | 524 | 1.48e-12 | 71.6 |
| MS.gene05870.t1 | AT2G35160 | 35.032 | 157 | 87 | 6 | 261 | 403 | 369 | 524 | 1.48e-12 | 71.6 |
| MS.gene05870.t1 | AT5G13960 | 31.343 | 201 | 106 | 7 | 261 | 435 | 153 | 347 | 1.85e-12 | 70.9 |
| MS.gene05870.t1 | AT5G13960 | 34.615 | 156 | 81 | 6 | 295 | 435 | 64 | 213 | 1.99e-12 | 70.5 |
| MS.gene05870.t1 | AT2G22740 | 28.507 | 221 | 128 | 6 | 261 | 463 | 334 | 542 | 7.65e-12 | 69.3 |
| MS.gene05870.t1 | AT2G22740 | 28.507 | 221 | 128 | 6 | 261 | 463 | 334 | 542 | 7.65e-12 | 69.3 |
Find 189 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCATGTGGCTGGCATTGC+TGG | 0.165381 | 4.4:-3456105 | MS.gene05870:CDS |
| GGCTCAATCTGTTGCACTTT+CGG | 0.170233 | 4.4:-3456067 | MS.gene05870:CDS |
| CGCATTGATTCGTGGATTAC+TGG | 0.205826 | 4.4:+3456431 | None:intergenic |
| GCTCAATCTGTTGCACTTTC+GGG | 0.210487 | 4.4:-3456066 | MS.gene05870:CDS |
| ACCATTCCGAAAGATCATTT+TGG | 0.229790 | 4.4:-3456228 | MS.gene05870:CDS |
| TTTCTGGCCAAAGTTATATT+AGG | 0.257421 | 4.4:-3454626 | MS.gene05870:CDS |
| CCATCTGTTCAGCCTGTTGC+TGG | 0.265242 | 4.4:+3453882 | None:intergenic |
| TCAACACTATGATAAACTTT+TGG | 0.267094 | 4.4:+3456339 | None:intergenic |
| GAGAAATGCTGGCGCAAAAT+TGG | 0.280557 | 4.4:-3455678 | MS.gene05870:CDS |
| TTCACTGGCTTCTTACTTAG+AGG | 0.297296 | 4.4:+3454967 | None:intergenic |
| CCTTTAAACTCCTTAATTAC+AGG | 0.297648 | 4.4:+3455321 | None:intergenic |
| TCAGTTGTATAAGCAGTATC+AGG | 0.302375 | 4.4:+3456303 | None:intergenic |
| CCTGTAATTAAGGAGTTTAA+AGG | 0.304552 | 4.4:-3455321 | MS.gene05870:CDS |
| CCGTCCACTACCTGTAATTA+AGG | 0.306280 | 4.4:-3455331 | MS.gene05870:CDS |
| TTGCTCTGTAGTGATTTATC+AGG | 0.331832 | 4.4:-3455363 | MS.gene05870:intron |
| GAAACCTCTGTCTCCTCATC+TGG | 0.333300 | 4.4:+3453812 | None:intergenic |
| GACTGCAATTCCAGCGAAAA+TGG | 0.341889 | 4.4:-3456454 | MS.gene05870:CDS |
| AGAATTGAGGTTGGAATTAG+AGG | 0.343041 | 4.4:+3457128 | None:intergenic |
| CAACTTCTGCAAAGCTTGCC+TGG | 0.358824 | 4.4:-3454658 | MS.gene05870:CDS |
| TGAAAGAAACTAACAGTAAC+AGG | 0.365938 | 4.4:+3456843 | None:intergenic |
| GTCTAAATTTCAGGAGGAAA+AGG | 0.367223 | 4.4:-3455016 | MS.gene05870:intron |
| GGGTTCTTGTTGGTGATACA+TGG | 0.371099 | 4.4:-3456167 | MS.gene05870:CDS |
| GATAGGGTCATAAGGTTTGC+AGG | 0.378221 | 4.4:-3455530 | MS.gene05870:intron |
| ACTAGATCTCCGGCGATAGA+TGG | 0.381976 | 4.4:+3457053 | None:intergenic |
| TCATATCTCACTCCTGCTTC+CGG | 0.383404 | 4.4:+3455717 | None:intergenic |
| CCCTATTCCTAATATAACTT+TGG | 0.385855 | 4.4:+3454619 | None:intergenic |
| GCCAAAGTTATATTAGGAAT+AGG | 0.386276 | 4.4:-3454620 | MS.gene05870:CDS |
| ATCGGTCCAAAATGATCTTT+CGG | 0.386659 | 4.4:+3456222 | None:intergenic |
| CTCAGAGTGGCCGCGCTTTG+CGG | 0.393158 | 4.4:-3454593 | MS.gene05870:CDS |
| GTTATCCTGTTCGTGTTGTT+AGG | 0.396528 | 4.4:-3455888 | MS.gene05870:intron |
| GCTCACTTTCCCCATGTGGC+TGG | 0.410799 | 4.4:-3456114 | MS.gene05870:CDS |
| CCAAAGTTATATTAGGAATA+GGG | 0.411543 | 4.4:-3454619 | MS.gene05870:CDS |
| CAAAGCAATGGCTTTAAACT+AGG | 0.414652 | 4.4:-3453648 | None:intergenic |
| CTTTCTGTGATAGGGTCATA+AGG | 0.415365 | 4.4:-3455538 | MS.gene05870:intron |
| TAGGATGGACTGTAGGCAAT+GGG | 0.422920 | 4.4:-3456139 | MS.gene05870:CDS |
| TCCAACCTCAATTCTCGATT+GGG | 0.423904 | 4.4:-3457120 | MS.gene05870:CDS |
| GAAGTAAAATAAAAGTTGTT+AGG | 0.426055 | 4.4:-3454924 | MS.gene05870:CDS |
| AACTCCTTAATTACAGGTAG+TGG | 0.426574 | 4.4:+3455327 | None:intergenic |
| CTATTGTTTGTTTCACCAGT+TGG | 0.427799 | 4.4:+3456939 | None:intergenic |
| AACGAACTTGCTCGAATTGT+AGG | 0.430282 | 4.4:-3456476 | MS.gene05870:CDS |
| TTCCAACCTCAATTCTCGAT+TGG | 0.431388 | 4.4:-3457121 | MS.gene05870:CDS |
| GCCAACTGCGCATTGATTCG+TGG | 0.435702 | 4.4:+3456423 | None:intergenic |
| AACCTTGTAGATCCCGTAGA+TGG | 0.441088 | 4.4:-3454946 | MS.gene05870:CDS |
| CATAGAATCACTCCAGCAAC+AGG | 0.450682 | 4.4:-3453894 | MS.gene05870:CDS |
| TGAAGGGTTTCAGTTTCTAA+AGG | 0.455219 | 4.4:+3457191 | None:intergenic |
| GGCTTCTTACTTAGAGGTGG+AGG | 0.455434 | 4.4:+3454973 | None:intergenic |
| AGGAAAAGGGCTGTTGGTTG+TGG | 0.457564 | 4.4:-3455002 | MS.gene05870:CDS |
| TCTAAATTTCAGGAGGAAAA+GGG | 0.458204 | 4.4:-3455015 | MS.gene05870:intron |
| AATATAACTTTGGCCAGAAA+AGG | 0.463331 | 4.4:+3454629 | None:intergenic |
| GAAGCAGGAGTGAGATATGA+TGG | 0.463457 | 4.4:-3455714 | MS.gene05870:CDS |
| ATAGGTAAACAGGGAAATGA+TGG | 0.472208 | 4.4:-3453921 | MS.gene05870:intron |
| ACTGAGAGAGCAAAGAAAAC+AGG | 0.475334 | 4.4:-3456285 | MS.gene05870:CDS |
| CTAACAGTAACAGGTCTCTC+AGG | 0.475349 | 4.4:+3456852 | None:intergenic |
| TTGCGCATGTTCGACAATGA+AGG | 0.476061 | 4.4:+3457174 | None:intergenic |
| TTTGAGAGATGGATTAAGCT+AGG | 0.476184 | 4.4:-3456501 | MS.gene05870:CDS |
| TTCTGCAAAGCTTGCCTGGA+GGG | 0.476412 | 4.4:-3454654 | MS.gene05870:CDS |
| AGCAGAACGTTTCTCCTTGT+GGG | 0.480480 | 4.4:+3455746 | None:intergenic |
| ACCCTGCGATCTTGCTACCT+TGG | 0.482344 | 4.4:+3456383 | None:intergenic |
| CCTTTCCTCCGTTTCTGTGG+AGG | 0.482447 | 4.4:+3453731 | None:intergenic |
| TCTGCTTATGCACCGGAAGC+AGG | 0.484529 | 4.4:-3455729 | MS.gene05870:CDS |
| ACAGACCTAACAACACGAAC+AGG | 0.484685 | 4.4:+3455883 | None:intergenic |
| ACCAACCTTGTCCATGGAGC+TGG | 0.485991 | 4.4:+3455480 | None:intergenic |
| TTTATAGAATTGAGAAATGC+TGG | 0.487676 | 4.4:-3455689 | MS.gene05870:CDS |
| GCAGCGGAATCGCCGGCGAC+GGG | 0.487908 | 4.4:+3457077 | None:intergenic |
| AAAGAAAGGGTGATCCATCA+TGG | 0.491109 | 4.4:-3455281 | MS.gene05870:CDS |
| GCAAGATCGCAGGGTGGTGT+TGG | 0.495237 | 4.4:-3456375 | MS.gene05870:CDS |
| GATTGATATTACTGAAAGAA+AGG | 0.496742 | 4.4:-3455295 | MS.gene05870:CDS |
| GGTGGGGCTTCTAATCCAAC+TGG | 0.497248 | 4.4:-3456954 | MS.gene05870:CDS |
| AGATGGAGCAGCGGAATCGC+CGG | 0.497890 | 4.4:+3457070 | None:intergenic |
| AGAACCCCACGGTTCCTTGT+TGG | 0.498957 | 4.4:+3456183 | None:intergenic |
| CAATATATGTCGCAAGGTGT+TGG | 0.499103 | 4.4:-3454709 | MS.gene05870:CDS |
| AGCAGCGGAATCGCCGGCGA+CGG | 0.500128 | 4.4:+3457076 | None:intergenic |
| ACTGGCTTCTTACTTAGAGG+TGG | 0.502069 | 4.4:+3454970 | None:intergenic |
| ATCTGAATCCTCCACAGAAA+CGG | 0.503509 | 4.4:-3453739 | MS.gene05870:CDS |
| AAAGGTGTCCTTCAAAATCA+AGG | 0.505676 | 4.4:-3454890 | MS.gene05870:CDS |
| AGGAACCGTGGGGTTCTTGT+TGG | 0.509560 | 4.4:-3456177 | MS.gene05870:CDS |
| CTCAGACTGAGTTGTCGAAA+AGG | 0.510946 | 4.4:-3455910 | MS.gene05870:CDS |
| AGGTGCTGGTGGCAAGGCTG+CGG | 0.516252 | 4.4:-3453711 | MS.gene05870:CDS |
| GGAAAGGCAAATGCTTGCAG+TGG | 0.518736 | 4.4:-3456264 | MS.gene05870:CDS |
| TTCAGGAGGAAAAGGGCTGT+TGG | 0.518740 | 4.4:-3455008 | MS.gene05870:intron |
| AGATCGCAGGGTGGTGTTGG+AGG | 0.520960 | 4.4:-3456372 | MS.gene05870:CDS |
| CTTAATTACAGGTAGTGGAC+GGG | 0.521249 | 4.4:+3455332 | None:intergenic |
| CCAGCAACAGGCTGAACAGA+TGG | 0.522139 | 4.4:-3453882 | MS.gene05870:CDS |
| ATCATTCTCGATGGCGCGAA+TGG | 0.523127 | 4.4:+3457025 | None:intergenic |
| GGCCAGAAAAGGCACCCTCC+AGG | 0.525887 | 4.4:+3454640 | None:intergenic |
| TCCACGAATCAATGCGCAGT+TGG | 0.529107 | 4.4:-3456424 | MS.gene05870:CDS |
| GGTTCTTGTTGGTGATACAT+GGG | 0.529549 | 4.4:-3456166 | MS.gene05870:CDS |
| GCACCTTTCCTCCGTTTCTG+TGG | 0.530401 | 4.4:+3453728 | None:intergenic |
| TGCGCATGTTCGACAATGAA+GGG | 0.532166 | 4.4:+3457175 | None:intergenic |
| GGCCAAGGTAGCAAGATCGC+AGG | 0.532514 | 4.4:-3456385 | MS.gene05870:CDS |
| AAGCAGAACGTTTCTCCTTG+TGG | 0.535286 | 4.4:+3455745 | None:intergenic |
| GGATCATTCTCAGCAACAAT+CGG | 0.537495 | 4.4:+3456204 | None:intergenic |
| ATTGATATTACTGAAAGAAA+GGG | 0.540474 | 4.4:-3455294 | MS.gene05870:CDS |
| AACGACAAGAACTCGTTGGT+GGG | 0.540602 | 4.4:-3456971 | MS.gene05870:CDS |
| TGGCAAGGCTGCGGCGAACA+CGG | 0.540848 | 4.4:-3453702 | MS.gene05870:CDS |
| CTATGTCAGTTGAACAAGTA+GGG | 0.541131 | 4.4:+3454547 | None:intergenic |
| GAGGAAAGGTGCTGGTGGCA+AGG | 0.542633 | 4.4:-3453717 | MS.gene05870:CDS |
| GACCAGCAATGCCAGCCACA+TGG | 0.543440 | 4.4:+3456103 | None:intergenic |
| GATTGTTCTCAACCCGTCGC+CGG | 0.544832 | 4.4:-3457089 | MS.gene05870:CDS |
| GGCGACGGGTTGAGAACAAT+CGG | 0.545056 | 4.4:+3457091 | None:intergenic |
| CAATCTGTTGCACTTTCGGG+TGG | 0.550312 | 4.4:-3456063 | MS.gene05870:CDS |
| ACTAAAACCAACCTTGTCCA+TGG | 0.553488 | 4.4:+3455474 | None:intergenic |
| ACCAGCAATGCCAGCCACAT+GGG | 0.555202 | 4.4:+3456104 | None:intergenic |
| AATGGCGGAAACTAGATCTC+CGG | 0.557159 | 4.4:+3457043 | None:intergenic |
| ATAGGATGGACTGTAGGCAA+TGG | 0.558208 | 4.4:-3456140 | MS.gene05870:CDS |
| GCATTCCCAATCGAGAATTG+AGG | 0.561022 | 4.4:+3457115 | None:intergenic |
| TTGCAGAAGTTGTGAGCACA+AGG | 0.563114 | 4.4:+3454669 | None:intergenic |
| ACACGCCATGCAAACACCAT+CGG | 0.564270 | 4.4:+3457223 | None:intergenic |
| TTGGTGATACATGGGAGGAT+AGG | 0.564503 | 4.4:-3456158 | MS.gene05870:CDS |
| ACAAACAATAGACGCAGTAA+TGG | 0.566643 | 4.4:-3456927 | MS.gene05870:CDS |
| TGATACATGGGAGGATAGGA+TGG | 0.568109 | 4.4:-3456154 | MS.gene05870:CDS |
| TTCCATCTACGGGATCTACA+AGG | 0.569005 | 4.4:+3454944 | None:intergenic |
| TGTCCTTCAAAATCAAGGAT+AGG | 0.570073 | 4.4:-3454885 | MS.gene05870:CDS |
| AAGCAGGAGTGAGATATGAT+GGG | 0.570701 | 4.4:-3455713 | MS.gene05870:CDS |
| GGGTGGTTACGTCGATGATG+AGG | 0.573268 | 4.4:-3456046 | MS.gene05870:CDS |
| TGACGCCGATGGTGTTTGCA+TGG | 0.574105 | 4.4:-3457228 | MS.gene05870:CDS |
| TTTGCAGGTATTTGTTTGTG+AGG | 0.577114 | 4.4:-3455515 | MS.gene05870:CDS |
| GTTGGCGATTGCGATTCGTA+TGG | 0.577533 | 4.4:-3456406 | MS.gene05870:CDS |
| CTTACATCAAAGTCCCATGA+TGG | 0.578513 | 4.4:+3455267 | None:intergenic |
| CAGAAACGGAGGAAAGGTGC+TGG | 0.579863 | 4.4:-3453725 | MS.gene05870:CDS |
| ACGGGATCTACAAGGTTCAC+TGG | 0.581841 | 4.4:+3454952 | None:intergenic |
| CCTCCACAGAAACGGAGGAA+AGG | 0.583231 | 4.4:-3453731 | MS.gene05870:CDS |
| TCCGCTGCTCCATCTATCGC+CGG | 0.586761 | 4.4:-3457062 | MS.gene05870:CDS |
| ATGATCCAACAAGGAACCGT+GGG | 0.587067 | 4.4:-3456188 | MS.gene05870:CDS |
| TCCAAAATGATCTTTCGGAA+TGG | 0.587351 | 4.4:+3456227 | None:intergenic |
| TCCCAATCGAGAATTGAGGT+TGG | 0.588219 | 4.4:+3457119 | None:intergenic |
| GTGACAATGAGCCAGCTCCA+TGG | 0.592691 | 4.4:-3455491 | MS.gene05870:CDS |
| CTCAGGCAAATGCATGCAGA+AGG | 0.593870 | 4.4:+3456869 | None:intergenic |
| GGCTTGCTTGATATCTTCGA+CGG | 0.595055 | 4.4:-3456906 | MS.gene05870:CDS |
| ATGAGCCAGCTCCATGGACA+AGG | 0.595160 | 4.4:-3455485 | MS.gene05870:intron |
| ATCAAGGATAGGCTATTGAA+AGG | 0.595479 | 4.4:-3454874 | MS.gene05870:intron |
| GAAACGTTCTGCTTATGCAC+CGG | 0.598496 | 4.4:-3455736 | MS.gene05870:CDS |
| GCTATGTCAGTTGAACAAGT+AGG | 0.603141 | 4.4:+3454546 | None:intergenic |
| GAGAGCAAAGAAAACAGGAA+AGG | 0.603334 | 4.4:-3456280 | MS.gene05870:CDS |
| AAACGACAAGAACTCGTTGG+TGG | 0.604581 | 4.4:-3456972 | MS.gene05870:CDS |
| GGGAGCTCACTTTCCCCATG+TGG | 0.605209 | 4.4:-3456118 | MS.gene05870:CDS |
| CCTTAATTACAGGTAGTGGA+CGG | 0.608213 | 4.4:+3455331 | None:intergenic |
| TGTTGGTTTCAGACACCATG+TGG | 0.611898 | 4.4:-3456546 | MS.gene05870:intron |
| TAGGTAAACAGGGAAATGAT+GGG | 0.612689 | 4.4:-3453920 | MS.gene05870:CDS |
| TGATTATCTTCAGAATCCAC+AGG | 0.613570 | 4.4:-3454523 | MS.gene05870:intron |
| GCCAAGGTAGCAAGATCGCA+GGG | 0.613846 | 4.4:-3456384 | MS.gene05870:CDS |
| ACAGTTTGAGAACATGAATG+AGG | 0.614864 | 4.4:-3455935 | MS.gene05870:CDS |
| AAGAAAGGGTGATCCATCAT+GGG | 0.617640 | 4.4:-3455280 | MS.gene05870:CDS |
| GAAAGGCAAATGCTTGCAGT+GGG | 0.618010 | 4.4:-3456263 | MS.gene05870:CDS |
| CAGCTACCTTGTGACGCCGA+TGG | 0.618405 | 4.4:-3457239 | MS.gene05870:CDS |
| CAGTTGTATAAGCAGTATCA+GGG | 0.618478 | 4.4:+3456304 | None:intergenic |
| ATTGCTGGTCAGAGTACACA+CGG | 0.620317 | 4.4:-3456090 | MS.gene05870:CDS |
| ATTCTCGATGGCGCGAATGG+CGG | 0.623248 | 4.4:+3457028 | None:intergenic |
| CGGTTGCAATATATGTCGCA+AGG | 0.623774 | 4.4:-3454715 | MS.gene05870:CDS |
| CAAGCCAGATGAGGAGACAG+AGG | 0.627835 | 4.4:-3453816 | MS.gene05870:CDS |
| TTAATTACAGGTAGTGGACG+GGG | 0.630700 | 4.4:+3455333 | None:intergenic |
| TGATGCTTCGCTTACCGATG+AGG | 0.632600 | 4.4:-3457006 | MS.gene05870:CDS |
| TGAGCACAAGGCGTAGTGAG+AGG | 0.632833 | 4.4:+3454681 | None:intergenic |
| GGGAGGATAGGATGGACTGT+AGG | 0.633787 | 4.4:-3456146 | MS.gene05870:CDS |
| GTCGAACATGCGCAACTCCG+TGG | 0.636269 | 4.4:-3457166 | MS.gene05870:CDS |
| AAGAAACGACAAGAACTCGT+TGG | 0.636427 | 4.4:-3456975 | MS.gene05870:CDS |
| TATCTGGTTCAGGTCCCACA+AGG | 0.638859 | 4.4:-3455760 | MS.gene05870:intron |
| GGTAAACAAGGAACATGCCA+CGG | 0.638895 | 4.4:+3457149 | None:intergenic |
| AAACGTAGGAAGCAAAGCAA+TGG | 0.642429 | 4.4:-3453660 | MS.gene05870:CDS |
| GCAACAGGCTGAACAGATGG+AGG | 0.643602 | 4.4:-3453879 | MS.gene05870:CDS |
| GATTGCGATTCGTATGGCCA+AGG | 0.645669 | 4.4:-3456400 | MS.gene05870:CDS |
| AAGCGAAGCATCATTCTCGA+TGG | 0.646924 | 4.4:+3457016 | None:intergenic |
| TGAATCCTCCACAGAAACGG+AGG | 0.653417 | 4.4:-3453736 | MS.gene05870:CDS |
| TCCGGCGATAGATGGAGCAG+CGG | 0.654768 | 4.4:+3457061 | None:intergenic |
| TCTTGTTGGTGATACATGGG+AGG | 0.655577 | 4.4:-3456163 | MS.gene05870:CDS |
| GTTGGAATTAGAGGTAAACA+AGG | 0.655876 | 4.4:+3457137 | None:intergenic |
| TGAAAATCTCAAGCCAGATG+AGG | 0.658043 | 4.4:-3453825 | MS.gene05870:CDS |
| AATGATCCAACAAGGAACCG+TGG | 0.659307 | 4.4:-3456189 | MS.gene05870:CDS |
| CTTCTGCAAAGCTTGCCTGG+AGG | 0.661026 | 4.4:-3454655 | MS.gene05870:CDS |
| CCAGCAATGCCAGCCACATG+GGG | 0.663982 | 4.4:+3456105 | None:intergenic |
| CACGGAGGAACATATTGACG+AGG | 0.665899 | 4.4:-3453684 | MS.gene05870:CDS |
| CATATTGACGAGGCAAACGT+AGG | 0.666576 | 4.4:-3453674 | MS.gene05870:CDS |
| TTGCTGGTCAGAGTACACAC+GGG | 0.671136 | 4.4:-3456089 | MS.gene05870:CDS |
| AGGATGGACTGTAGGCAATG+GGG | 0.672226 | 4.4:-3456138 | MS.gene05870:CDS |
| ACGACAAGAACTCGTTGGTG+GGG | 0.672283 | 4.4:-3456970 | MS.gene05870:CDS |
| CAAACACCATCGGCGTCACA+AGG | 0.672371 | 4.4:+3457233 | None:intergenic |
| AGCAGGAGTGAGATATGATG+GGG | 0.676405 | 4.4:-3455712 | MS.gene05870:CDS |
| AAACGGAGGAAAGGTGCTGG+TGG | 0.676422 | 4.4:-3453722 | MS.gene05870:CDS |
| GTTGGTTTCAGACACCATGT+GGG | 0.680763 | 4.4:-3456545 | MS.gene05870:intron |
| TTGCTGAGAATGATCCAACA+AGG | 0.687062 | 4.4:-3456197 | MS.gene05870:CDS |
| TTACAGGTAGTGGACGGGGA+CGG | 0.692145 | 4.4:+3455337 | None:intergenic |
| AGGAATAGGGCATCTCAGAG+TGG | 0.716214 | 4.4:-3454606 | MS.gene05870:CDS |
| CAAGGCTGCGGCGAACACGG+AGG | 0.722485 | 4.4:-3453699 | MS.gene05870:CDS |
| TATCACCAACAAGAACCCCA+CGG | 0.735719 | 4.4:+3456172 | None:intergenic |
| TGCTGGTCAGAGTACACACG+GGG | 0.735876 | 4.4:-3456088 | MS.gene05870:CDS |
| TGTAAAGGAACCACTCACCG+TGG | 0.737377 | 4.4:+3456022 | None:intergenic |
| TGATCCAACAAGGAACCGTG+GGG | 0.760116 | 4.4:-3456187 | MS.gene05870:CDS |
| AAGGTAGCAAGATCGCAGGG+TGG | 0.760686 | 4.4:-3456381 | MS.gene05870:CDS |
| TACGTCGATGATGAGGACCA+CGG | 0.776378 | 4.4:-3456039 | MS.gene05870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGATATTAAACAAATT+AGG | + | chr4.4:3455076-3455095 | None:intergenic | 10.0% |
| !! | AAATGTTAAAAGAAATGAAA+AGG | + | chr4.4:3454086-3454105 | None:intergenic | 15.0% |
| !! | AACAAAAATAAGTTAAGTTA+AGG | + | chr4.4:3454286-3454305 | None:intergenic | 15.0% |
| !! | AATGTTAAAAGAAATGAAAA+GGG | + | chr4.4:3454085-3454104 | None:intergenic | 15.0% |
| !! | ATAATAATGATCTGAAAAAA+AGG | + | chr4.4:3456084-3456103 | None:intergenic | 15.0% |
| !! | TATAGTATGTTCAATTAATA+CGG | - | chr4.4:3456127-3456146 | MS.gene05870:CDS | 15.0% |
| !! | TCAATAATTATATTGTTATC+AGG | - | chr4.4:3456516-3456535 | MS.gene05870:CDS | 15.0% |
| !! | TCATTTCATAATATTTGATT+TGG | + | chr4.4:3456643-3456662 | None:intergenic | 15.0% |
| !!! | TTTTTTGAAATTGAAAATGA+AGG | - | chr4.4:3454320-3454339 | MS.gene05870:intron | 15.0% |
| !! | AATTAAAAGGAATTCAATGA+GGG | + | chr4.4:3456591-3456610 | None:intergenic | 20.0% |
| !! | ATCAAATATTATGAAATGAC+TGG | - | chr4.4:3456644-3456663 | MS.gene05870:intron | 20.0% |
| !! | ATGTTAAAAGAAATGAAAAG+GGG | + | chr4.4:3454084-3454103 | None:intergenic | 20.0% |
| !! | ATTGATATTACTGAAAGAAA+GGG | - | chr4.4:3455603-3455622 | MS.gene05870:intron | 20.0% |
| !! | CAAAGGAAAAATAAAAATTG+AGG | + | chr4.4:3455450-3455469 | None:intergenic | 20.0% |
| !! | GAAGTAAAATAAAAGTTGTT+AGG | - | chr4.4:3455973-3455992 | MS.gene05870:CDS | 20.0% |
| !! | GTTCAAAATTTATTGTTGAT+GGG | - | chr4.4:3455333-3455352 | MS.gene05870:CDS | 20.0% |
| !! | TATTTGATCCAATCAAATAA+GGG | - | chr4.4:3456544-3456563 | MS.gene05870:intron | 20.0% |
| !! | TGTTCAAAATTTATTGTTGA+TGG | - | chr4.4:3455332-3455351 | MS.gene05870:CDS | 20.0% |
| !! | TTCAAAATTTATTGTTGATG+GGG | - | chr4.4:3455334-3455353 | MS.gene05870:CDS | 20.0% |
| !!! | TGTTTATTTCTGTTTTCAAT+AGG | - | chr4.4:3456958-3456977 | MS.gene05870:CDS | 20.0% |
| !!! | TTTAACTGAAGAGTTTATTT+TGG | - | chr4.4:3454238-3454257 | MS.gene05870:intron | 20.0% |
| !!! | TTTTATTTTACTTCCATCTA+CGG | + | chr4.4:3455967-3455986 | None:intergenic | 20.0% |
| ! | AAATCAGTTAGGTTATTCAA+TGG | + | chr4.4:3454188-3454207 | None:intergenic | 25.0% |
| ! | ACAATAGTCAAGTTAGATTT+GGG | - | chr4.4:3455773-3455792 | MS.gene05870:intron | 25.0% |
| ! | CAATTAAAAGGAATTCAATG+AGG | + | chr4.4:3456592-3456611 | None:intergenic | 25.0% |
| ! | CCAAAGTTATATTAGGAATA+GGG | - | chr4.4:3456278-3456297 | MS.gene05870:CDS | 25.0% |
| ! | CCTAACTAAAAAAATCAGTT+AGG | + | chr4.4:3454199-3454218 | None:intergenic | 25.0% |
| ! | CGAAAATATGTAATTCACAA+TGG | - | chr4.4:3456698-3456717 | MS.gene05870:intron | 25.0% |
| ! | CTATTTAAAAAAATGCGAAG+TGG | + | chr4.4:3456402-3456421 | None:intergenic | 25.0% |
| ! | GATTGATATTACTGAAAGAA+AGG | - | chr4.4:3455602-3455621 | MS.gene05870:intron | 25.0% |
| ! | GTATTTGATCCAATCAAATA+AGG | - | chr4.4:3456543-3456562 | MS.gene05870:intron | 25.0% |
| ! | TATACGGAAAGTCAATTAAA+AGG | + | chr4.4:3456604-3456623 | None:intergenic | 25.0% |
| ! | TGTTCATTTGTCTAAATTTC+AGG | - | chr4.4:3455872-3455891 | MS.gene05870:intron | 25.0% |
| ! | TTTATAGAATTGAGAAATGC+TGG | - | chr4.4:3455208-3455227 | MS.gene05870:intron | 25.0% |
| !! | GAACATTTTCATGGTAAATT+AGG | + | chr4.4:3456674-3456693 | None:intergenic | 25.0% |
| !! | GTAATAATCCCTTATTTGAT+TGG | + | chr4.4:3456555-3456574 | None:intergenic | 25.0% |
| !! | TCAACACTATGATAAACTTT+TGG | + | chr4.4:3454561-3454580 | None:intergenic | 25.0% |
| !! | TGTTTATGGATTTGTTTATC+TGG | - | chr4.4:3455121-3455140 | MS.gene05870:intron | 25.0% |
| !! | TTTCGAAAAGAACATTTTCA+TGG | + | chr4.4:3456683-3456702 | None:intergenic | 25.0% |
| !!! | CCTAACTGATTTTTTTAGTT+AGG | - | chr4.4:3454196-3454215 | MS.gene05870:intron | 25.0% |
| !!! | TCTGTCATGAATTTTGTTTA+TGG | - | chr4.4:3455107-3455126 | MS.gene05870:intron | 25.0% |
| !!! | TTTATTTTACTTCCATCTAC+GGG | + | chr4.4:3455966-3455985 | None:intergenic | 25.0% |
| AAACAAAAATTATGCCCACA+TGG | + | chr4.4:3454369-3454388 | None:intergenic | 30.0% | |
| AAGGTTAATATTCATCACCA+AGG | + | chr4.4:3456057-3456076 | None:intergenic | 30.0% | |
| AATATAACTTTGGCCAGAAA+AGG | + | chr4.4:3456271-3456290 | None:intergenic | 30.0% | |
| AATTCAATGAGGGTTCAATT+TGG | + | chr4.4:3456581-3456600 | None:intergenic | 30.0% | |
| AGTGTTTACTATGATGTCTA+TGG | - | chr4.4:3456726-3456745 | MS.gene05870:intron | 30.0% | |
| AGTTGAATAAATGCAGTGAT+TGG | + | chr4.4:3455278-3455297 | None:intergenic | 30.0% | |
| CAATAGTCAAGTTAGATTTG+GGG | - | chr4.4:3455774-3455793 | MS.gene05870:intron | 30.0% | |
| CAATCCCAAAGCTAATAATA+AGG | + | chr4.4:3456475-3456494 | None:intergenic | 30.0% | |
| CACAATAGTCAAGTTAGATT+TGG | - | chr4.4:3455772-3455791 | MS.gene05870:intron | 30.0% | |
| CCCTATTCCTAATATAACTT+TGG | + | chr4.4:3456281-3456300 | None:intergenic | 30.0% | |
| CCTGTAATTAAGGAGTTTAA+AGG | - | chr4.4:3455576-3455595 | MS.gene05870:intron | 30.0% | |
| CCTTTAAACTCCTTAATTAC+AGG | + | chr4.4:3455579-3455598 | None:intergenic | 30.0% | |
| GATCTGAAAAAAAGGAAACA+AGG | + | chr4.4:3456076-3456095 | None:intergenic | 30.0% | |
| GCCAAAGTTATATTAGGAAT+AGG | - | chr4.4:3456277-3456296 | MS.gene05870:CDS | 30.0% | |
| GTGTTTACTATGATGTCTAT+GGG | - | chr4.4:3456727-3456746 | MS.gene05870:intron | 30.0% | |
| TCATTTGTCTAAATTTCAGG+AGG | - | chr4.4:3455875-3455894 | MS.gene05870:intron | 30.0% | |
| TCTAAATTTCAGGAGGAAAA+GGG | - | chr4.4:3455882-3455901 | MS.gene05870:intron | 30.0% | |
| TGAAAGAAACTAACAGTAAC+AGG | + | chr4.4:3454057-3454076 | None:intergenic | 30.0% | |
| TGTCTGTACTAATATACAAG+TGG | - | chr4.4:3455478-3455497 | MS.gene05870:intron | 30.0% | |
| TTCAAGTGAAAAAGTCTTGA+AGG | - | chr4.4:3457120-3457139 | MS.gene05870:CDS | 30.0% | |
| TTTGGGGAAAATTATTTGCT+AGG | - | chr4.4:3455790-3455809 | MS.gene05870:intron | 30.0% | |
| ! | ATTGAAAGGTATATGATCCT+TGG | - | chr4.4:3456037-3456056 | MS.gene05870:CDS | 30.0% |
| ! | CTGTTTTCAATAGGTAAACA+GGG | - | chr4.4:3456967-3456986 | MS.gene05870:CDS | 30.0% |
| ! | TAAATGCAGTGATTGGTAAT+TGG | + | chr4.4:3455271-3455290 | None:intergenic | 30.0% |
| ! | TCTGTTTTCAATAGGTAAAC+AGG | - | chr4.4:3456966-3456985 | MS.gene05870:CDS | 30.0% |
| ! | TGTTTTGCTCTGCATTAAAA+AGG | - | chr4.4:3456931-3456950 | MS.gene05870:CDS | 30.0% |
| ! | TTTCTGGCCAAAGTTATATT+AGG | - | chr4.4:3456271-3456290 | MS.gene05870:CDS | 30.0% |
| !! | AAATGAAGGTGATTTGTTGT+TGG | - | chr4.4:3454334-3454353 | MS.gene05870:intron | 30.0% |
| !! | ACTAGCCTTATTATTAGCTT+TGG | - | chr4.4:3456467-3456486 | MS.gene05870:CDS | 30.0% |
| !! | CTAGCCTTATTATTAGCTTT+GGG | - | chr4.4:3456468-3456487 | MS.gene05870:CDS | 30.0% |
| !! | TTTCTTAGCTTTTTCCTCAT+CGG | + | chr4.4:3453908-3453927 | None:intergenic | 30.0% |
| !!! | AAGTTTTGTTGCAAATCACA+AGG | - | chr4.4:3456793-3456812 | MS.gene05870:intron | 30.0% |
| !!! | ACTTTTTCACTTGAATCACA+GGG | + | chr4.4:3457115-3457134 | None:intergenic | 30.0% |
| !!! | CTGAAGAGTTTATTTTGGTT+AGG | - | chr4.4:3454243-3454262 | MS.gene05870:intron | 30.0% |
| AACCTATAGAACAGCAAAGT+TGG | + | chr4.4:3455834-3455853 | None:intergenic | 35.0% | |
| AACTCCTTAATTACAGGTAG+TGG | + | chr4.4:3455573-3455592 | None:intergenic | 35.0% | |
| ACAAACAATAGACGCAGTAA+TGG | - | chr4.4:3453970-3453989 | MS.gene05870:intron | 35.0% | |
| ACAGTTTGAGAACATGAATG+AGG | - | chr4.4:3454962-3454981 | MS.gene05870:CDS | 35.0% | |
| AGAATTGAGGTTGGAATTAG+AGG | + | chr4.4:3453772-3453791 | None:intergenic | 35.0% | |
| ATAGGTAAACAGGGAAATGA+TGG | - | chr4.4:3456976-3456995 | MS.gene05870:CDS | 35.0% | |
| ATCAAGGATAGGCTATTGAA+AGG | - | chr4.4:3456023-3456042 | MS.gene05870:intron | 35.0% | |
| ATCGGTCCAAAATGATCTTT+CGG | + | chr4.4:3454678-3454697 | None:intergenic | 35.0% | |
| CAGTTAAAGATCGAATCGTT+GGG | + | chr4.4:3454226-3454245 | None:intergenic | 35.0% | |
| CAGTTGTATAAGCAGTATCA+GGG | + | chr4.4:3454596-3454615 | None:intergenic | 35.0% | |
| CTATGTCAGTTGAACAAGTA+GGG | + | chr4.4:3456353-3456372 | None:intergenic | 35.0% | |
| CTATTGTTTGTTTCACCAGT+TGG | + | chr4.4:3453961-3453980 | None:intergenic | 35.0% | |
| GTCTAAATTTCAGGAGGAAA+AGG | - | chr4.4:3455881-3455900 | MS.gene05870:intron | 35.0% | |
| GTTGGAATTAGAGGTAAACA+AGG | + | chr4.4:3453763-3453782 | None:intergenic | 35.0% | |
| TAGGTAAACAGGGAAATGAT+GGG | - | chr4.4:3456977-3456996 | MS.gene05870:CDS | 35.0% | |
| TCAGTTAAAGATCGAATCGT+TGG | + | chr4.4:3454227-3454246 | None:intergenic | 35.0% | |
| TCAGTTGTATAAGCAGTATC+AGG | + | chr4.4:3454597-3454616 | None:intergenic | 35.0% | |
| TCCAAAATGATCTTTCGGAA+TGG | + | chr4.4:3454673-3454692 | None:intergenic | 35.0% | |
| TGAAGGGTTTCAGTTTCTAA+AGG | + | chr4.4:3453709-3453728 | None:intergenic | 35.0% | |
| TGATTATCTTCAGAATCCAC+AGG | - | chr4.4:3456374-3456393 | MS.gene05870:CDS | 35.0% | |
| TGTCCTTCAAAATCAAGGAT+AGG | - | chr4.4:3456012-3456031 | MS.gene05870:intron | 35.0% | |
| TGTTAGGCCAAAGACAAAAA+AGG | - | chr4.4:3455989-3456008 | MS.gene05870:intron | 35.0% | |
| TTGCTCTGTAGTGATTTATC+AGG | - | chr4.4:3455534-3455553 | MS.gene05870:intron | 35.0% | |
| TTTGCAGGTATTTGTTTGTG+AGG | - | chr4.4:3455382-3455401 | MS.gene05870:intron | 35.0% | |
| ! | ACCATTCCGAAAGATCATTT+TGG | - | chr4.4:3454669-3454688 | MS.gene05870:CDS | 35.0% |
| ! | TAGCCTATCCTTGATTTTGA+AGG | + | chr4.4:3456018-3456037 | None:intergenic | 35.0% |
| ! | TGGATTTGTTTATCTGGTTC+AGG | - | chr4.4:3455127-3455146 | MS.gene05870:intron | 35.0% |
| !! | AAAGGTGTCCTTCAAAATCA+AGG | - | chr4.4:3456007-3456026 | MS.gene05870:intron | 35.0% |
| !! | TTCCAACTTTGCTGTTCTAT+AGG | - | chr4.4:3455829-3455848 | MS.gene05870:intron | 35.0% |
| !! | TTTGAGAGATGGATTAAGCT+AGG | - | chr4.4:3454396-3454415 | MS.gene05870:intron | 35.0% |
| !!! | AAGGACACCTTTTTTGTCTT+TGG | + | chr4.4:3455999-3456018 | None:intergenic | 35.0% |
| !!! | GACTTTTTCACTTGAATCAC+AGG | + | chr4.4:3457116-3457135 | None:intergenic | 35.0% |
| !!! | GTTTGAAGTGTTTTGAGAGA+TGG | - | chr4.4:3454385-3454404 | MS.gene05870:intron | 35.0% |
| AAACGTAGGAAGCAAAGCAA+TGG | - | chr4.4:3457237-3457256 | MS.gene05870:CDS | 40.0% | |
| AAAGAAAGGGTGATCCATCA+TGG | - | chr4.4:3455616-3455635 | MS.gene05870:intron | 40.0% | |
| AAGAAACGACAAGAACTCGT+TGG | - | chr4.4:3453922-3453941 | MS.gene05870:intron | 40.0% | |
| AAGAAAGGGTGATCCATCAT+GGG | - | chr4.4:3455617-3455636 | MS.gene05870:intron | 40.0% | |
| AAGCAGGAGTGAGATATGAT+GGG | - | chr4.4:3455184-3455203 | MS.gene05870:intron | 40.0% | |
| ACTAAAACCAACCTTGTCCA+TGG | + | chr4.4:3455426-3455445 | None:intergenic | 40.0% | |
| ACTCTGCAAACACAATGACA+TGG | + | chr4.4:3456161-3456180 | None:intergenic | 40.0% | |
| ACTGAGAGAGCAAAGAAAAC+AGG | - | chr4.4:3454612-3454631 | MS.gene05870:CDS | 40.0% | |
| ATCTGAATCCTCCACAGAAA+CGG | - | chr4.4:3457158-3457177 | MS.gene05870:CDS | 40.0% | |
| ATGGGGATCTTTCTGTGATA+GGG | - | chr4.4:3455351-3455370 | MS.gene05870:CDS | 40.0% | |
| CAATATATGTCGCAAGGTGT+TGG | - | chr4.4:3456188-3456207 | MS.gene05870:CDS | 40.0% | |
| CAATGAGGGTTCAATTTGGA+GGG | + | chr4.4:3456577-3456596 | None:intergenic | 40.0% | |
| CTTACATCAAAGTCCCATGA+TGG | + | chr4.4:3455633-3455652 | None:intergenic | 40.0% | |
| CTTTCTGTGATAGGGTCATA+AGG | - | chr4.4:3455359-3455378 | MS.gene05870:intron | 40.0% | |
| GAGAGCAAAGAAAACAGGAA+AGG | - | chr4.4:3454617-3454636 | MS.gene05870:CDS | 40.0% | |
| GCTATGTCAGTTGAACAAGT+AGG | + | chr4.4:3456354-3456373 | None:intergenic | 40.0% | |
| GGATCATTCTCAGCAACAAT+CGG | + | chr4.4:3454696-3454715 | None:intergenic | 40.0% | |
| GTACAGACACACACATACAA+AGG | + | chr4.4:3455467-3455486 | None:intergenic | 40.0% | |
| GTCATTGTGTTTGCAGAGTT+CGG | - | chr4.4:3456162-3456181 | MS.gene05870:CDS | 40.0% | |
| TCAATGAGGGTTCAATTTGG+AGG | + | chr4.4:3456578-3456597 | None:intergenic | 40.0% | |
| TCATGGGACTTTGATGTAAG+TGG | - | chr4.4:3455633-3455652 | MS.gene05870:intron | 40.0% | |
| TCCAACCTCAATTCTCGATT+GGG | - | chr4.4:3453777-3453796 | MS.gene05870:CDS | 40.0% | |
| TGAAAATCTCAAGCCAGATG+AGG | - | chr4.4:3457072-3457091 | MS.gene05870:CDS | 40.0% | |
| TTCCAACCTCAATTCTCGAT+TGG | - | chr4.4:3453776-3453795 | MS.gene05870:CDS | 40.0% | |
| TTGCTGAGAATGATCCAACA+AGG | - | chr4.4:3454700-3454719 | MS.gene05870:CDS | 40.0% | |
| ! | AACGAACTTGCTCGAATTGT+AGG | - | chr4.4:3454421-3454440 | MS.gene05870:intron | 40.0% |
| ! | GCTGTTCTATAGGTTTTGCA+TGG | - | chr4.4:3455839-3455858 | MS.gene05870:intron | 40.0% |
| ! | GTTATCCTGTTCGTGTTGTT+AGG | - | chr4.4:3455009-3455028 | MS.gene05870:intron | 40.0% |
| !! | CCTTAATTACAGGTAGTGGA+CGG | + | chr4.4:3455569-3455588 | None:intergenic | 40.0% |
| !! | CTTAATTACAGGTAGTGGAC+GGG | + | chr4.4:3455568-3455587 | None:intergenic | 40.0% |
| !! | GGTTCTTGTTGGTGATACAT+GGG | - | chr4.4:3454731-3454750 | MS.gene05870:intron | 40.0% |
| !! | TTAATTACAGGTAGTGGACG+GGG | + | chr4.4:3455567-3455586 | None:intergenic | 40.0% |
| !! | TTCACTGGCTTCTTACTTAG+AGG | + | chr4.4:3455933-3455952 | None:intergenic | 40.0% |
| AAAATGCGAAGTGGTACCTG+TGG | + | chr4.4:3456393-3456412 | None:intergenic | 45.0% | |
| AAACGACAAGAACTCGTTGG+TGG | - | chr4.4:3453925-3453944 | MS.gene05870:intron | 45.0% | |
| AACCTTGTAGATCCCGTAGA+TGG | - | chr4.4:3455951-3455970 | MS.gene05870:CDS | 45.0% | |
| AACGACAAGAACTCGTTGGT+GGG | - | chr4.4:3453926-3453945 | MS.gene05870:intron | 45.0% | |
| AAGCAGAACGTTTCTCCTTG+TGG | + | chr4.4:3455155-3455174 | None:intergenic | 45.0% | |
| AATGATCCAACAAGGAACCG+TGG | - | chr4.4:3454708-3454727 | MS.gene05870:CDS | 45.0% | |
| ACAGACCTAACAACACGAAC+AGG | + | chr4.4:3455017-3455036 | None:intergenic | 45.0% | |
| AGCAGAACGTTTCTCCTTGT+GGG | + | chr4.4:3455154-3455173 | None:intergenic | 45.0% | |
| AGCAGGAGTGAGATATGATG+GGG | - | chr4.4:3455185-3455204 | MS.gene05870:intron | 45.0% | |
| ATGATCCAACAAGGAACCGT+GGG | - | chr4.4:3454709-3454728 | MS.gene05870:CDS | 45.0% | |
| ATTGCTGGTCAGAGTACACA+CGG | - | chr4.4:3454807-3454826 | MS.gene05870:intron | 45.0% | |
| CATAGAATCACTCCAGCAAC+AGG | - | chr4.4:3457003-3457022 | MS.gene05870:CDS | 45.0% | |
| CATATTGACGAGGCAAACGT+AGG | - | chr4.4:3457223-3457242 | MS.gene05870:CDS | 45.0% | |
| CCGTCCACTACCTGTAATTA+AGG | - | chr4.4:3455566-3455585 | MS.gene05870:intron | 45.0% | |
| CGGTTGCAATATATGTCGCA+AGG | - | chr4.4:3456182-3456201 | MS.gene05870:CDS | 45.0% | |
| CTAACAGTAACAGGTCTCTC+AGG | + | chr4.4:3454048-3454067 | None:intergenic | 45.0% | |
| CTCAGACTGAGTTGTCGAAA+AGG | - | chr4.4:3454987-3455006 | MS.gene05870:CDS | 45.0% | |
| GAAACGTTCTGCTTATGCAC+CGG | - | chr4.4:3455161-3455180 | MS.gene05870:intron | 45.0% | |
| GAAAGGCAAATGCTTGCAGT+GGG | - | chr4.4:3454634-3454653 | MS.gene05870:CDS | 45.0% | |
| GAAGCAGGAGTGAGATATGA+TGG | - | chr4.4:3455183-3455202 | MS.gene05870:intron | 45.0% | |
| GACTGCAATTCCAGCGAAAA+TGG | - | chr4.4:3454443-3454462 | MS.gene05870:intron | 45.0% | |
| GAGAAATGCTGGCGCAAAAT+TGG | - | chr4.4:3455219-3455238 | MS.gene05870:intron | 45.0% | |
| GATAGGGTCATAAGGTTTGC+AGG | - | chr4.4:3455367-3455386 | MS.gene05870:intron | 45.0% | |
| GATGGGGATCTTTCTGTGAT+AGG | - | chr4.4:3455350-3455369 | MS.gene05870:CDS | 45.0% | |
| GCATTCCCAATCGAGAATTG+AGG | + | chr4.4:3453785-3453804 | None:intergenic | 45.0% | |
| GCTCAATCTGTTGCACTTTC+GGG | - | chr4.4:3454831-3454850 | MS.gene05870:intron | 45.0% | |
| GGCTCAATCTGTTGCACTTT+CGG | - | chr4.4:3454830-3454849 | MS.gene05870:intron | 45.0% | |
| GGTAAACAAGGAACATGCCA+CGG | + | chr4.4:3453751-3453770 | None:intergenic | 45.0% | |
| TATCACCAACAAGAACCCCA+CGG | + | chr4.4:3454728-3454747 | None:intergenic | 45.0% | |
| TCATATCTCACTCCTGCTTC+CGG | + | chr4.4:3455183-3455202 | None:intergenic | 45.0% | |
| TCCCAATCGAGAATTGAGGT+TGG | + | chr4.4:3453781-3453800 | None:intergenic | 45.0% | |
| TGATACATGGGAGGATAGGA+TGG | - | chr4.4:3454743-3454762 | MS.gene05870:intron | 45.0% | |
| TGCGCATGTTCGACAATGAA+GGG | + | chr4.4:3453725-3453744 | None:intergenic | 45.0% | |
| TTCCATCTACGGGATCTACA+AGG | + | chr4.4:3455956-3455975 | None:intergenic | 45.0% | |
| TTGCAGAAGTTGTGAGCACA+AGG | + | chr4.4:3456231-3456250 | None:intergenic | 45.0% | |
| TTGCGCATGTTCGACAATGA+AGG | + | chr4.4:3453726-3453745 | None:intergenic | 45.0% | |
| ! | AAGCGAAGCATCATTCTCGA+TGG | + | chr4.4:3453884-3453903 | None:intergenic | 45.0% |
| ! | AATGGCGGAAACTAGATCTC+CGG | + | chr4.4:3453857-3453876 | None:intergenic | 45.0% |
| ! | ACTGGCTTCTTACTTAGAGG+TGG | + | chr4.4:3455930-3455949 | None:intergenic | 45.0% |
| ! | GGCTTGCTTGATATCTTCGA+CGG | - | chr4.4:3453991-3454010 | MS.gene05870:intron | 45.0% |
| ! | GTTGGTTTCAGACACCATGT+GGG | - | chr4.4:3454352-3454371 | MS.gene05870:intron | 45.0% |
| ! | TTGGTGATACATGGGAGGAT+AGG | - | chr4.4:3454739-3454758 | MS.gene05870:intron | 45.0% |
| !! | ATAGGATGGACTGTAGGCAA+TGG | - | chr4.4:3454757-3454776 | MS.gene05870:intron | 45.0% |
| !! | CGCATTGATTCGTGGATTAC+TGG | + | chr4.4:3454469-3454488 | None:intergenic | 45.0% |
| !! | GGGTTCTTGTTGGTGATACA+TGG | - | chr4.4:3454730-3454749 | MS.gene05870:intron | 45.0% |
| !! | TAGGATGGACTGTAGGCAAT+GGG | - | chr4.4:3454758-3454777 | MS.gene05870:intron | 45.0% |
| !! | TCTTGTTGGTGATACATGGG+AGG | - | chr4.4:3454734-3454753 | MS.gene05870:intron | 45.0% |
| !! | TGTTGGTTTCAGACACCATG+TGG | - | chr4.4:3454351-3454370 | MS.gene05870:intron | 45.0% |
| !! | AGAATAATAATAATTATATA+CGG | + | chr4.4:3456620-3456639 | None:intergenic | 5.0% |
| ACACGCCATGCAAACACCAT+CGG | + | chr4.4:3453677-3453696 | None:intergenic | 50.0% | |
| ACGACAAGAACTCGTTGGTG+GGG | - | chr4.4:3453927-3453946 | MS.gene05870:intron | 50.0% | |
| ACGGGATCTACAAGGTTCAC+TGG | + | chr4.4:3455948-3455967 | None:intergenic | 50.0% | |
| ACTAGATCTCCGGCGATAGA+TGG | + | chr4.4:3453847-3453866 | None:intergenic | 50.0% | |
| ATCATTCTCGATGGCGCGAA+TGG | + | chr4.4:3453875-3453894 | None:intergenic | 50.0% | |
| CAACTTCTGCAAAGCTTGCC+TGG | - | chr4.4:3456239-3456258 | MS.gene05870:CDS | 50.0% | |
| CAATCTGTTGCACTTTCGGG+TGG | - | chr4.4:3454834-3454853 | MS.gene05870:intron | 50.0% | |
| CACGGAGGAACATATTGACG+AGG | - | chr4.4:3457213-3457232 | MS.gene05870:CDS | 50.0% | |
| CGGTGAGTGGTTCCTTTACA+CGG | - | chr4.4:3454878-3454897 | MS.gene05870:CDS | 50.0% | |
| CTCAGGCAAATGCATGCAGA+AGG | + | chr4.4:3454031-3454050 | None:intergenic | 50.0% | |
| GAAACCTCTGTCTCCTCATC+TGG | + | chr4.4:3457088-3457107 | None:intergenic | 50.0% | |
| GATTGCGATTCGTATGGCCA+AGG | - | chr4.4:3454497-3454516 | MS.gene05870:intron | 50.0% | |
| GGAAAGGCAAATGCTTGCAG+TGG | - | chr4.4:3454633-3454652 | MS.gene05870:CDS | 50.0% | |
| GGCTTCTTACTTAGAGGTGG+AGG | + | chr4.4:3455927-3455946 | None:intergenic | 50.0% | |
| GGTGAGTGGTTCCTTTACAC+GGG | - | chr4.4:3454879-3454898 | MS.gene05870:CDS | 50.0% | |
| GGTTCCTTTACACGGGAAGT+GGG | - | chr4.4:3454886-3454905 | MS.gene05870:CDS | 50.0% | |
| GTTCCTTTACACGGGAAGTG+GGG | - | chr4.4:3454887-3454906 | MS.gene05870:CDS | 50.0% | |
| GTTGGCGATTGCGATTCGTA+TGG | - | chr4.4:3454491-3454510 | MS.gene05870:intron | 50.0% | |
| TACGTCGATGATGAGGACCA+CGG | - | chr4.4:3454858-3454877 | MS.gene05870:intron | 50.0% | |
| TCCACGAATCAATGCGCAGT+TGG | - | chr4.4:3454473-3454492 | MS.gene05870:intron | 50.0% | |
| TGAATCCTCCACAGAAACGG+AGG | - | chr4.4:3457161-3457180 | MS.gene05870:CDS | 50.0% | |
| TGATCCAACAAGGAACCGTG+GGG | - | chr4.4:3454710-3454729 | MS.gene05870:CDS | 50.0% | |
| TGATGCTTCGCTTACCGATG+AGG | - | chr4.4:3453891-3453910 | MS.gene05870:CDS | 50.0% | |
| TGGTTCCTTTACACGGGAAG+TGG | - | chr4.4:3454885-3454904 | MS.gene05870:CDS | 50.0% | |
| TGTAAAGGAACCACTCACCG+TGG | + | chr4.4:3454878-3454897 | None:intergenic | 50.0% | |
| TTCAGGAGGAAAAGGGCTGT+TGG | - | chr4.4:3455889-3455908 | MS.gene05870:CDS | 50.0% | |
| TTCCTTTACACGGGAAGTGG+GGG | - | chr4.4:3454888-3454907 | MS.gene05870:CDS | 50.0% | |
| TTCTGCAAAGCTTGCCTGGA+GGG | - | chr4.4:3456243-3456262 | MS.gene05870:CDS | 50.0% | |
| TTGCTGGTCAGAGTACACAC+GGG | - | chr4.4:3454808-3454827 | MS.gene05870:intron | 50.0% | |
| ! | AGGAAAAGGGCTGTTGGTTG+TGG | - | chr4.4:3455895-3455914 | MS.gene05870:CDS | 50.0% |
| ! | AGGAATAGGGCATCTCAGAG+TGG | - | chr4.4:3456291-3456310 | MS.gene05870:CDS | 50.0% |
| ! | TATCTGGTTCAGGTCCCACA+AGG | - | chr4.4:3455137-3455156 | MS.gene05870:intron | 50.0% |
| ! | TCTTTTGTGTCCGCAAAGCG+CGG | + | chr4.4:3456317-3456336 | None:intergenic | 50.0% |
| !! | AGGATGGACTGTAGGCAATG+GGG | - | chr4.4:3454759-3454778 | MS.gene05870:intron | 50.0% |
| !! | GGATTACTGGCCATTTTCGC+TGG | + | chr4.4:3454456-3454475 | None:intergenic | 50.0% |
| AAGGTAGCAAGATCGCAGGG+TGG | - | chr4.4:3454516-3454535 | MS.gene05870:intron | 55.0% | |
| ACCAACCTTGTCCATGGAGC+TGG | + | chr4.4:3455420-3455439 | None:intergenic | 55.0% | |
| ACCAGCAATGCCAGCCACAT+GGG | + | chr4.4:3454796-3454815 | None:intergenic | 55.0% | |
| ACCCTGCGATCTTGCTACCT+TGG | + | chr4.4:3454517-3454536 | None:intergenic | 55.0% | |
| AGAACCCCACGGTTCCTTGT+TGG | + | chr4.4:3454717-3454736 | None:intergenic | 55.0% | |
| AGGAACCGTGGGGTTCTTGT+TGG | - | chr4.4:3454720-3454739 | MS.gene05870:CDS | 55.0% | |
| ATGAGCCAGCTCCATGGACA+AGG | - | chr4.4:3455412-3455431 | MS.gene05870:intron | 55.0% | |
| ATGATGAGGACCACGGTGAG+TGG | - | chr4.4:3454865-3454884 | MS.gene05870:intron | 55.0% | |
| ATTCTCGATGGCGCGAATGG+CGG | + | chr4.4:3453872-3453891 | None:intergenic | 55.0% | |
| CAAACACCATCGGCGTCACA+AGG | + | chr4.4:3453667-3453686 | None:intergenic | 55.0% | |
| CAAGCCAGATGAGGAGACAG+AGG | - | chr4.4:3457081-3457100 | MS.gene05870:CDS | 55.0% | |
| CCAGCAACAGGCTGAACAGA+TGG | - | chr4.4:3457015-3457034 | MS.gene05870:CDS | 55.0% | |
| CCATCTGTTCAGCCTGTTGC+TGG | + | chr4.4:3457018-3457037 | None:intergenic | 55.0% | |
| CCTCCACAGAAACGGAGGAA+AGG | - | chr4.4:3457166-3457185 | MS.gene05870:CDS | 55.0% | |
| CCTTTCCTCCGTTTCTGTGG+AGG | + | chr4.4:3457169-3457188 | None:intergenic | 55.0% | |
| CTTCTGCAAAGCTTGCCTGG+AGG | - | chr4.4:3456242-3456261 | MS.gene05870:CDS | 55.0% | |
| GATTGTTCTCAACCCGTCGC+CGG | - | chr4.4:3453808-3453827 | MS.gene05870:CDS | 55.0% | |
| GCAACAGGCTGAACAGATGG+AGG | - | chr4.4:3457018-3457037 | MS.gene05870:CDS | 55.0% | |
| GCACCTTTCCTCCGTTTCTG+TGG | + | chr4.4:3457172-3457191 | None:intergenic | 55.0% | |
| GCCAAGGTAGCAAGATCGCA+GGG | - | chr4.4:3454513-3454532 | MS.gene05870:intron | 55.0% | |
| GGGTGGTTACGTCGATGATG+AGG | - | chr4.4:3454851-3454870 | MS.gene05870:intron | 55.0% | |
| GGTGGGGCTTCTAATCCAAC+TGG | - | chr4.4:3453943-3453962 | MS.gene05870:intron | 55.0% | |
| GTGACAATGAGCCAGCTCCA+TGG | - | chr4.4:3455406-3455425 | MS.gene05870:intron | 55.0% | |
| TCCTTTACACGGGAAGTGGG+GGG | - | chr4.4:3454889-3454908 | MS.gene05870:CDS | 55.0% | |
| TCTGCTTATGCACCGGAAGC+AGG | - | chr4.4:3455168-3455187 | MS.gene05870:intron | 55.0% | |
| TGACGCCGATGGTGTTTGCA+TGG | - | chr4.4:3453669-3453688 | MS.gene05870:CDS | 55.0% | |
| TGAGCACAAGGCGTAGTGAG+AGG | + | chr4.4:3456219-3456238 | None:intergenic | 55.0% | |
| TGCTGGTCAGAGTACACACG+GGG | - | chr4.4:3454809-3454828 | MS.gene05870:intron | 55.0% | |
| ! | CAGAAACGGAGGAAAGGTGC+TGG | - | chr4.4:3457172-3457191 | MS.gene05870:CDS | 55.0% |
| !! | AAACGGAGGAAAGGTGCTGG+TGG | - | chr4.4:3457175-3457194 | MS.gene05870:CDS | 55.0% |
| !! | GCCAACTGCGCATTGATTCG+TGG | + | chr4.4:3454477-3454496 | None:intergenic | 55.0% |
| !! | GGCGACGGGTTGAGAACAAT+CGG | + | chr4.4:3453809-3453828 | None:intergenic | 55.0% |
| !! | GGGAGGATAGGATGGACTGT+AGG | - | chr4.4:3454751-3454770 | MS.gene05870:intron | 55.0% |
| !! | TTACAGGTAGTGGACGGGGA+CGG | + | chr4.4:3455563-3455582 | None:intergenic | 55.0% |
| AGATGGAGCAGCGGAATCGC+CGG | + | chr4.4:3453830-3453849 | None:intergenic | 60.0% | |
| AGTGGGGGGAGAGATCTCAG+CGG | - | chr4.4:3454903-3454922 | MS.gene05870:CDS | 60.0% | |
| CAGCTACCTTGTGACGCCGA+TGG | - | chr4.4:3453658-3453677 | MS.gene05870:CDS | 60.0% | |
| CCAGCAATGCCAGCCACATG+GGG | + | chr4.4:3454795-3454814 | None:intergenic | 60.0% | |
| GACCAGCAATGCCAGCCACA+TGG | + | chr4.4:3454797-3454816 | None:intergenic | 60.0% | |
| GCAAGATCGCAGGGTGGTGT+TGG | - | chr4.4:3454522-3454541 | MS.gene05870:intron | 60.0% | |
| GCCAGCTCCATGGACAAGGT+TGG | - | chr4.4:3455416-3455435 | MS.gene05870:intron | 60.0% | |
| GCTCACTTTCCCCATGTGGC+TGG | - | chr4.4:3454783-3454802 | MS.gene05870:intron | 60.0% | |
| GGCCAAGGTAGCAAGATCGC+AGG | - | chr4.4:3454512-3454531 | MS.gene05870:intron | 60.0% | |
| GGGAGCTCACTTTCCCCATG+TGG | - | chr4.4:3454779-3454798 | MS.gene05870:intron | 60.0% | |
| GTCGAACATGCGCAACTCCG+TGG | - | chr4.4:3453731-3453750 | MS.gene05870:CDS | 60.0% | |
| TCCCCCCACTTCCCGTGTAA+AGG | + | chr4.4:3454893-3454912 | None:intergenic | 60.0% | |
| TCCGCTGCTCCATCTATCGC+CGG | - | chr4.4:3453835-3453854 | MS.gene05870:CDS | 60.0% | |
| TCCGGCGATAGATGGAGCAG+CGG | + | chr4.4:3453839-3453858 | None:intergenic | 60.0% | |
| ! | AGATCGCAGGGTGGTGTTGG+AGG | - | chr4.4:3454525-3454544 | MS.gene05870:CDS | 60.0% |
| !! | GAGGAAAGGTGCTGGTGGCA+AGG | - | chr4.4:3457180-3457199 | MS.gene05870:CDS | 60.0% |
| !!! | TGCCTGGAGGGTGCCTTTTC+TGG | - | chr4.4:3456255-3456274 | MS.gene05870:CDS | 60.0% |
| CCCCATGTGGCTGGCATTGC+TGG | - | chr4.4:3454792-3454811 | MS.gene05870:intron | 65.0% | |
| CTCAGAGTGGCCGCGCTTTG+CGG | - | chr4.4:3456304-3456323 | MS.gene05870:CDS | 65.0% | |
| TGGCAAGGCTGCGGCGAACA+CGG | - | chr4.4:3457195-3457214 | MS.gene05870:CDS | 65.0% | |
| !! | AGGTGCTGGTGGCAAGGCTG+CGG | - | chr4.4:3457186-3457205 | MS.gene05870:CDS | 65.0% |
| !! | GGCCAGAAAAGGCACCCTCC+AGG | + | chr4.4:3456260-3456279 | None:intergenic | 65.0% |
| AGCAGCGGAATCGCCGGCGA+CGG | + | chr4.4:3453824-3453843 | None:intergenic | 70.0% | |
| CAAGGCTGCGGCGAACACGG+AGG | - | chr4.4:3457198-3457217 | MS.gene05870:CDS | 70.0% | |
| GCAGCGGAATCGCCGGCGAC+GGG | + | chr4.4:3453823-3453842 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3453649 | 3457270 | 3453649 | ID=MS.gene05870 |
| chr4.4 | mRNA | 3453649 | 3457270 | 3453649 | ID=MS.gene05870.t1;Parent=MS.gene05870 |
| chr4.4 | exon | 3456857 | 3457270 | 3456857 | ID=MS.gene05870.t1.exon1;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3456857 | 3457270 | 3456857 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3456036 | 3456556 | 3456036 | ID=MS.gene05870.t1.exon2;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3456036 | 3456556 | 3456036 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3455889 | 3456005 | 3455889 | ID=MS.gene05870.t1.exon3;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3455889 | 3456005 | 3455889 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3455671 | 3455770 | 3455671 | ID=MS.gene05870.t1.exon4;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3455671 | 3455770 | 3455671 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3455486 | 3455547 | 3455486 | ID=MS.gene05870.t1.exon5;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3455486 | 3455547 | 3455486 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3455272 | 3455374 | 3455272 | ID=MS.gene05870.t1.exon6;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3455272 | 3455374 | 3455272 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3454875 | 3455025 | 3454875 | ID=MS.gene05870.t1.exon7;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3454875 | 3455025 | 3454875 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3454524 | 3454741 | 3454524 | ID=MS.gene05870.t1.exon8;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3454524 | 3454741 | 3454524 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| chr4.4 | exon | 3453649 | 3453939 | 3453649 | ID=MS.gene05870.t1.exon9;Parent=MS.gene05870.t1 |
| chr4.4 | CDS | 3453649 | 3453939 | 3453649 | ID=cds.MS.gene05870.t1;Parent=MS.gene05870.t1 |
| Gene Sequence |
| Protein sequence |
