AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87801.t1 MTR_8g102580 68.919 666 165 7 6 631 2 665 0.0 894
MS.gene87801.t1 MTR_5g098680 65.179 672 186 7 6 631 6 675 0.0 840
MS.gene87801.t1 MTR_3g114910 60.911 417 109 6 38 451 26 391 7.97e-176 505
MS.gene87801.t1 MTR_6g053210 34.302 344 84 7 46 370 5 225 6.69e-46 165
MS.gene87801.t1 MTR_6g053210 61.644 73 28 0 559 631 235 307 2.25e-18 86.7
MS.gene87801.t1 MTR_1g035420 36.667 150 84 3 247 385 217 366 3.00e-17 86.3
MS.gene87801.t1 MTR_8g070070 38.562 153 80 4 247 385 325 477 1.28e-16 84.3
MS.gene87801.t1 MTR_6g061270 34.356 163 89 5 247 393 223 383 9.07e-16 81.3
MS.gene87801.t1 MTR_7g088370 34.194 155 88 4 247 390 263 414 1.91e-15 80.5
MS.gene87801.t1 MTR_8g071030 35.948 153 84 3 247 385 305 457 5.01e-15 79.3
MS.gene87801.t1 MTR_8g070075 34.641 153 86 4 247 385 318 470 7.93e-15 78.6
MS.gene87801.t1 MTR_6g061200 33.129 163 91 5 247 393 223 383 2.92e-14 76.6
MS.gene87801.t1 MTR_6g044690 34.459 148 86 5 247 386 137 281 1.30e-12 71.2
MS.gene87801.t1 MTR_4g010550 33.784 148 87 3 247 386 49 193 1.49e-12 70.5
MS.gene87801.t1 MTR_1g035400 34.211 152 87 5 247 385 134 285 4.08e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87801.t1 AT1G57820 53.105 612 224 10 8 563 6 610 0.0 646
MS.gene87801.t1 AT1G57820 53.105 612 224 10 8 563 6 610 0.0 646
MS.gene87801.t1 AT1G57820 53.202 609 225 10 8 563 6 607 0.0 646
MS.gene87801.t1 AT5G39550 52.764 597 220 14 8 560 6 584 0.0 612
MS.gene87801.t1 AT1G66040 52.542 590 221 13 8 553 6 580 0.0 595
MS.gene87801.t1 AT1G66050 52.203 590 223 12 8 553 6 580 0.0 594
MS.gene87801.t1 AT1G57800 48.534 614 237 15 6 548 4 609 0.0 568
MS.gene87801.t1 AT1G57800 48.287 613 236 15 6 548 4 605 0.0 563
MS.gene87801.t1 AT4G08590 48.908 458 175 14 8 438 6 431 3.16e-139 414
MS.gene87801.t1 AT4G08590 48.796 457 176 14 8 438 6 430 2.14e-138 412
MS.gene87801.t1 AT4G08590 48.539 445 170 14 8 425 6 418 1.94e-132 395
MS.gene87801.t1 AT4G08590 47.188 409 157 14 8 389 6 382 3.34e-115 350
MS.gene87801.t1 AT4G08590 45.714 385 151 13 8 366 6 358 9.41e-103 317
MS.gene87801.t1 AT4G08590 45.714 385 151 13 8 366 6 358 9.41e-103 317
MS.gene87801.t1 AT2G33290 37.748 151 81 5 247 386 211 359 5.64e-16 82.0
MS.gene87801.t1 AT2G33290 37.748 151 81 5 247 386 211 359 5.64e-16 82.0
MS.gene87801.t1 AT2G33290 37.748 151 81 5 247 386 211 359 5.64e-16 82.0
MS.gene87801.t1 AT2G33290 37.748 151 81 5 247 386 211 359 5.64e-16 82.0
MS.gene87801.t1 AT5G04940 35.849 159 85 5 247 391 215 370 9.79e-15 78.2
MS.gene87801.t1 AT5G04940 35.849 159 85 5 247 391 215 370 9.79e-15 78.2
MS.gene87801.t1 AT4G13460 35.443 158 89 5 247 393 209 364 2.25e-14 77.0
MS.gene87801.t1 AT4G13460 35.443 158 89 5 247 393 209 364 2.25e-14 77.0
MS.gene87801.t1 AT5G13960 33.537 164 90 4 247 393 153 314 4.62e-14 75.9
MS.gene87801.t1 AT2G22740 33.548 155 87 4 247 386 334 487 6.24e-14 75.9
MS.gene87801.t1 AT2G22740 33.548 155 87 4 247 386 334 487 6.24e-14 75.9
MS.gene87801.t1 AT5G13960 34.395 157 84 4 247 386 19 173 7.01e-14 75.1

Find 156 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCAGTCAGTTGCTCTTTC+TGG 0.065244 1.2:+41722926 MS.gene87801:CDS
ACCTATAATTGAGGAGTTTA+AGG 0.146808 1.2:+41723634 MS.gene87801:CDS
ACGATTCCAATAGATCATTT+TGG 0.199264 1.2:+41722764 MS.gene87801:CDS
CACGAACAGGATAGCCATTT+TGG 0.200055 1.2:-41723096 None:intergenic
TGGCCAAAGTTATATTTCTA+AGG 0.219271 1.2:+41725416 MS.gene87801:CDS
TGATTCAAGTGAAATATTTC+AGG 0.244406 1.2:+41726135 MS.gene87801:CDS
CGGTGAGTGGTTCCTTTATA+CGG 0.252259 1.2:+41722973 MS.gene87801:CDS
GAGAAATGTTGGCGCAAAAT+TGG 0.255568 1.2:+41723298 MS.gene87801:CDS
GACCAGCAATCCCCGCAATA+TGG 0.265157 1.2:-41722889 None:intergenic
TCATATCTCACTCCTGCTTT+TGG 0.274714 1.2:-41723259 None:intergenic
GGATTCTTGGTCATCTTTGC+TGG 0.275592 1.2:-41722551 None:intergenic
CCCCATATTGCGGGGATTGC+TGG 0.290706 1.2:+41722887 MS.gene87801:CDS
TTCCACCACTTCCCGTATAA+AGG 0.309213 1.2:-41722985 None:intergenic
ATAGGTTAATAAAGAAATAA+TGG 0.310053 1.2:+41725997 MS.gene87801:intron
GGCAACTTTGTTGATGTCAT+TGG 0.316463 1.2:-41722015 None:intergenic
GCTATCCTGTTCGTGTTATT+AGG 0.321291 1.2:+41723104 MS.gene87801:CDS
TTTGTATGCAGTGATTTATT+AGG 0.326326 1.2:+41723593 MS.gene87801:intron
TTCTCGATACGTCTCTTTGC+AGG 0.326727 1.2:-41721886 None:intergenic
GTAACAAAGGTACAAATAAA+AGG 0.327130 1.2:+41723020 MS.gene87801:intron
TCCTTAAACTCCTCAATTAT+AGG 0.329415 1.2:-41723635 None:intergenic
ATCGGTCCAAAATGATCTAT+TGG 0.338198 1.2:-41722770 None:intergenic
GGGTTCTTGTTGGTGATACA+TGG 0.342233 1.2:+41722825 MS.gene87801:CDS
ACATATTGATGAGGCAGAAT+TGG 0.354569 1.2:+41726240 MS.gene87801:CDS
TTGAGACTCAGTTGCCAAAA+TGG 0.354609 1.2:+41723082 MS.gene87801:CDS
GAAAGGGTTATAAAGTTTGC+AGG 0.370247 1.2:+41723425 MS.gene87801:intron
GCAACTTTGTTGATGTCATT+GGG 0.371718 1.2:-41722014 None:intergenic
TTTGTTTAGCGATGAAGAAT+TGG 0.375796 1.2:+41722046 MS.gene87801:CDS
CTGATCAACAATTTAAAGAT+AGG 0.376098 1.2:+41723050 MS.gene87801:CDS
TTCAGGAGGAAAAGGGTTGC+TGG 0.389484 1.2:+41725051 MS.gene87801:intron
ATACAAATTTCAGGAGGAAA+AGG 0.391935 1.2:+41725043 MS.gene87801:intron
TTCCCACTACAATCTATGAT+TGG 0.394717 1.2:+41721970 MS.gene87801:CDS
CTCAATTATAGGTAGTGGTC+GGG 0.402866 1.2:-41723624 None:intergenic
TTCTGCAAAATCTGCCTTGA+GGG 0.403578 1.2:+41725384 MS.gene87801:CDS
TCCATTTCACAAAACACTTT+AGG 0.413839 1.2:-41722478 None:intergenic
TTTATAGAATTGAGAAATGT+TGG 0.416474 1.2:+41723287 MS.gene87801:CDS
CTCCCTTAGAAATATAACTT+TGG 0.425328 1.2:-41725419 None:intergenic
AAATGGATTAAGGATGGAAA+TGG 0.436348 1.2:+41722494 MS.gene87801:CDS
CCAACGAGAGGCTGAACAAA+TGG 0.436811 1.2:+41726036 MS.gene87801:CDS
AGGAAAAGGGTTGCTGGTTG+TGG 0.439545 1.2:+41725057 MS.gene87801:CDS
ACTGAGAGAACAAAGAAATC+AGG 0.444069 1.2:+41722707 MS.gene87801:CDS
TGATACATGGGGAGATAGGA+TGG 0.447018 1.2:+41722838 MS.gene87801:CDS
CGCCAGAAAGAGCAACTGAC+TGG 0.449819 1.2:-41722928 None:intergenic
ACCAGCAATCCCCGCAATAT+GGG 0.450678 1.2:-41722888 None:intergenic
TAGGATGGAATGTAAGCAAT+GGG 0.454356 1.2:+41722853 MS.gene87801:CDS
GAATGATCCAACAAGGAGGC+GGG 0.459090 1.2:+41722802 MS.gene87801:CDS
ATGTATGAAGAACTTGTTGC+TGG 0.459347 1.2:+41722074 MS.gene87801:CDS
ATCAACCTTGTCCATGGAGC+TGG 0.459843 1.2:-41723475 None:intergenic
GGATCATTCTCAGCAATAAT+CGG 0.463917 1.2:-41722788 None:intergenic
CCATTTGTTCAGCCTCTCGT+TGG 0.465410 1.2:-41726036 None:intergenic
TCCCACTACAATCTATGATT+GGG 0.467641 1.2:+41721971 MS.gene87801:CDS
CTAACAGTGACAGGTCTCTC+AGG 0.469314 1.2:-41722182 None:intergenic
TACAAATTTCAGGAGGAAAA+GGG 0.470573 1.2:+41725044 MS.gene87801:intron
GGTTCTTGTTGGTGATACAT+GGG 0.474741 1.2:+41722826 MS.gene87801:CDS
ACAAACCTAATAACACGAAC+AGG 0.478738 1.2:-41723109 None:intergenic
ACTCTCAGATCTTGCTAGCT+TGG 0.479913 1.2:-41722612 None:intergenic
TCAGGAAAAGCTAATGTTGT+TGG 0.481646 1.2:+41722725 MS.gene87801:CDS
AGTCAGTTGCTCTTTCTGGC+GGG 0.488233 1.2:+41722930 MS.gene87801:CDS
GGCCAAAGTTATATTTCTAA+GGG 0.492868 1.2:+41725417 MS.gene87801:CDS
AAAGGAAGGGTGATCCATCA+TGG 0.493405 1.2:+41723675 MS.gene87801:CDS
TCAGTCTTGTAACAAGTGTC+AGG 0.494666 1.2:-41722689 None:intergenic
AGAGGAATGTTTCTCCTTGT+GGG 0.498560 1.2:-41723230 None:intergenic
AACTCCTCAATTATAGGTAG+TGG 0.498984 1.2:-41723629 None:intergenic
TGAGCACAAGGTGTTGTAAG+AGG 0.501144 1.2:-41725357 None:intergenic
TTTGTGAAATGGATTAAGGA+TGG 0.502978 1.2:+41722488 MS.gene87801:CDS
CAATTGCTTGAATTGTAAAA+CGG 0.503895 1.2:+41722523 MS.gene87801:CDS
AAAGGTGTCCTTCAAAATCA+AGG 0.505676 1.2:+41725169 MS.gene87801:CDS
ATGATCCAACAAGGAGGCGG+GGG 0.513329 1.2:+41722804 MS.gene87801:CDS
TCCTCTTATGCACCAAAAGC+AGG 0.513587 1.2:+41723247 MS.gene87801:CDS
TGCTAGCTTGGCCACACGAA+TGG 0.520546 1.2:-41722600 None:intergenic
GCAGGCCATGCATACGCCAT+TGG 0.521132 1.2:-41721868 None:intergenic
AAGAGGAATGTTTCTCCTTG+TGG 0.526594 1.2:-41723231 None:intergenic
CAAAAGAAACTAACAGTGAC+AGG 0.526842 1.2:-41722191 None:intergenic
CGATGTTAGTTGAACAAGTA+GGG 0.527869 1.2:-41725464 None:intergenic
GTTTAGCGATGAAGAATTGG+CGG 0.530457 1.2:+41722049 MS.gene87801:CDS
AGAATGATCCAACAAGGAGG+CGG 0.533072 1.2:+41722801 MS.gene87801:CDS
ATCGCTAAACAAAGGTGGAC+TGG 0.533268 1.2:-41722036 None:intergenic
TCCTCTACTGAAAACAACAT+TGG 0.535789 1.2:+41722098 MS.gene87801:CDS
GGTGAGTGGTTCCTTTATAC+GGG 0.536258 1.2:+41722974 MS.gene87801:CDS
CAGTCAGTTGCTCTTTCTGG+CGG 0.537914 1.2:+41722929 MS.gene87801:CDS
CTAGCAAGATCTGAGAGTGT+TGG 0.540174 1.2:+41722617 MS.gene87801:CDS
ACCGGCTTCTTACTAAGTGG+TGG 0.542915 1.2:-41725089 None:intergenic
CATGCTGGATGATAAGATAG+AGG 0.543827 1.2:+41726099 MS.gene87801:CDS
TTGCAGAAGTTGTGAGCACA+AGG 0.550433 1.2:-41725369 None:intergenic
GAGCACAAGGTGTTGTAAGA+GGG 0.552772 1.2:-41725356 None:intergenic
AAGTGATGAAAATCTCATGC+TGG 0.552999 1.2:+41726084 MS.gene87801:CDS
GGCTTCTTACTAAGTGGTGG+AGG 0.553420 1.2:-41725086 None:intergenic
CCGACCACTACCTATAATTG+AGG 0.556426 1.2:+41723625 MS.gene87801:CDS
TGATTATCTTCAAAATCCAC+AGG 0.558282 1.2:+41725488 MS.gene87801:CDS
GGAAAAGCTAATGTTGTTGG+TGG 0.558380 1.2:+41722728 MS.gene87801:CDS
CAAAAGAGGAGGAAAGGTAA+TGG 0.559102 1.2:+41726190 MS.gene87801:CDS
TTGGTGATACATGGGGAGAT+AGG 0.560509 1.2:+41722834 MS.gene87801:CDS
CCAGCAATCCCCGCAATATG+GGG 0.562661 1.2:-41722887 None:intergenic
AGTTGACATTACTGAAAGGA+AGG 0.564447 1.2:+41723661 MS.gene87801:CDS
CTTACATCAAAGTCCCATGA+TGG 0.566094 1.2:-41723689 None:intergenic
ATAAGAATGCTCCACAAAAG+AGG 0.567809 1.2:+41726176 MS.gene87801:CDS
CCTCAATTATAGGTAGTGGT+CGG 0.569585 1.2:-41723625 None:intergenic
CAGCTTCCTTGTGACTCCAA+TGG 0.569846 1.2:+41721852 MS.gene87801:CDS
AATGATCCAACAAGGAGGCG+GGG 0.570704 1.2:+41722803 MS.gene87801:CDS
GCAAAACTTGCAATAAGCCA+TGG 0.571037 1.2:+41721925 MS.gene87801:CDS
GAGGAAAGGTAATGGAGGCA+AGG 0.571304 1.2:+41726198 MS.gene87801:CDS
TCCACCACTTAGTAAGAAGC+CGG 0.572237 1.2:+41725088 MS.gene87801:CDS
GCCAGAAAGAGCAACTGACT+GGG 0.572445 1.2:-41722927 None:intergenic
TGTCCTTCAAAATCAAGGAT+AGG 0.577288 1.2:+41725174 MS.gene87801:CDS
ATCAAGGATAGGTTATTGAA+AGG 0.579801 1.2:+41725185 MS.gene87801:CDS
CATAGATTGTAGTGGGAAGG+AGG 0.581188 1.2:-41721965 None:intergenic
AGGCAAGGCTGTGGTGAACA+TGG 0.583775 1.2:+41726213 MS.gene87801:CDS
TGACTCCAATGGCGTATGCA+TGG 0.584830 1.2:+41721863 MS.gene87801:CDS
AGGTAATGGAGGCAAGGCTG+TGG 0.586615 1.2:+41726204 MS.gene87801:CDS
TCCCAATCATAGATTGTAGT+GGG 0.591503 1.2:-41721972 None:intergenic
GTTGGCGAACGCCATTCGTG+TGG 0.592073 1.2:+41722589 MS.gene87801:CDS
ACAATTTAAAGATAGGAATG+AGG 0.592075 1.2:+41723057 MS.gene87801:CDS
GTGACAATGAGCCAGCTCCA+TGG 0.592691 1.2:+41723464 MS.gene87801:CDS
GCTCCACAAAAGAGGAGGAA+AGG 0.592739 1.2:+41726184 MS.gene87801:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 1.2:+41723470 MS.gene87801:CDS
TTTGCAGGTATTTGTTTGTG+AGG 0.596884 1.2:+41723440 MS.gene87801:CDS
TTCACCGGCTTCTTACTAAG+TGG 0.597288 1.2:-41725092 None:intergenic
ATCTATGATTGGGAATGCCC+TGG 0.598470 1.2:+41721981 MS.gene87801:CDS
ATTGCTGGTCAAAGTAGTCA+TGG 0.601087 1.2:+41722902 MS.gene87801:CDS
TCTTCATCGCTAAACAAAGG+TGG 0.604543 1.2:-41722041 None:intergenic
ATGACGAAGACCACGGTGAG+TGG 0.606110 1.2:+41722960 MS.gene87801:CDS
AGTAAACATGGCATATGCCA+TGG 0.607296 1.2:-41721942 None:intergenic
ATAGGATGGAATGTAAGCAA+TGG 0.609099 1.2:+41722852 MS.gene87801:CDS
AATCATAGATTGTAGTGGGA+AGG 0.610898 1.2:-41721968 None:intergenic
GTTCTTGTTGGTGATACATG+GGG 0.611481 1.2:+41722827 MS.gene87801:CDS
TTCCCAATCATAGATTGTAG+TGG 0.613702 1.2:-41721973 None:intergenic
AAAGCAGGAGTGAGATATGA+CGG 0.615626 1.2:+41723262 MS.gene87801:CDS
AAGGAAGGGTGATCCATCAT+GGG 0.617640 1.2:+41723676 MS.gene87801:CDS
ACGATGTTAGTTGAACAAGT+AGG 0.620801 1.2:-41725465 None:intergenic
AGCACAAGGTGTTGTAAGAG+GGG 0.621158 1.2:-41725355 None:intergenic
TCAATTATAGGTAGTGGTCG+GGG 0.621301 1.2:-41723623 None:intergenic
AATATTTCACTTGAATCACA+AGG 0.627953 1.2:-41726130 None:intergenic
TGGAGCAAGCATTTCTACAG+AGG 0.629773 1.2:+41722637 MS.gene87801:CDS
TGATCCAACAAGGAGGCGGG+GGG 0.632009 1.2:+41722805 MS.gene87801:CDS
CAGCAATCCCCGCAATATGG+GGG 0.636776 1.2:-41722886 None:intergenic
GGCCAGAAAAGACACCCTCA+AGG 0.639715 1.2:-41725398 None:intergenic
TTATAGGTAGTGGTCGGGGA+CGG 0.640704 1.2:-41723619 None:intergenic
ATGCAGTTGACATTACTGAA+AGG 0.640737 1.2:+41723657 MS.gene87801:CDS
ATAGGATCGACAATGTTCAC+CGG 0.641647 1.2:-41725107 None:intergenic
CATGGAAGAACATATTGATG+AGG 0.644622 1.2:+41726231 MS.gene87801:CDS
GAAAAGCTAATGTTGTTGGT+GGG 0.645095 1.2:+41722729 MS.gene87801:CDS
AATTCTTCATCGCTAAACAA+AGG 0.645742 1.2:-41722044 None:intergenic
TACATTGATGACGAAGACCA+CGG 0.647956 1.2:+41722953 MS.gene87801:CDS
AGAATGCTCCACAAAAGAGG+AGG 0.650023 1.2:+41726179 MS.gene87801:CDS
CTTCTGCAAAATCTGCCTTG+AGG 0.653244 1.2:+41725383 MS.gene87801:CDS
CATAGAATCACTCCAACGAG+AGG 0.656194 1.2:+41726024 MS.gene87801:CDS
CATACGCCATTGGAGTCACA+AGG 0.662456 1.2:-41721858 None:intergenic
TCATTGGTTCAGACTCCATG+TGG 0.662877 1.2:+41722443 MS.gene87801:intron
TCATTGGGCTGAGAACAACC+AGG 0.663523 1.2:-41721999 None:intergenic
GTGGGAAGGAGGAGTAAACA+TGG 0.666201 1.2:-41721954 None:intergenic
AAGAGGAGGAAAGGTAATGG+AGG 0.667393 1.2:+41726193 MS.gene87801:CDS
GTTGACATTACTGAAAGGAA+GGG 0.667673 1.2:+41723662 MS.gene87801:CDS
TTGCTGAGAATGATCCAACA+AGG 0.691905 1.2:+41722795 MS.gene87801:CDS
CATTGGGCTGAGAACAACCA+GGG 0.719376 1.2:-41721998 None:intergenic
CTGAGAATGATCCAACAAGG+AGG 0.731919 1.2:+41722798 MS.gene87801:CDS
TATAAAGGAACCACTCACCG+TGG 0.734894 1.2:-41722970 None:intergenic
AGGATGGAATGTAAGCAATG+GGG 0.764192 1.2:+41722854 MS.gene87801:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATATTTATTATTGAC+GGG + chr1.2:41723392-41723411 MS.gene87801:intron 10.0%
!! CATTTAATATTTATTATTGA+CGG + chr1.2:41723391-41723410 MS.gene87801:intron 10.0%
!!! TAAAAAAGTTATTAGTTTAT+TGG - chr1.2:41725919-41725938 None:intergenic 10.0%
!! AAACATAAATAAATGTAGAA+AGG - chr1.2:41724778-41724797 None:intergenic 15.0%
!! AAACTAGAAATTAAAAAATG+TGG + chr1.2:41723913-41723932 MS.gene87801:intron 15.0%
!! AAATGTTTAATATGATAACT+TGG + chr1.2:41723560-41723579 MS.gene87801:intron 15.0%
!! AACTAGAAATTAAAAAATGT+GGG + chr1.2:41723914-41723933 MS.gene87801:intron 15.0%
!! AATTTATGGATACAATTAAA+AGG - chr1.2:41725724-41725743 None:intergenic 15.0%
!! ACTTTATATTAAGATTTGTA+AGG + chr1.2:41725001-41725020 MS.gene87801:intron 15.0%
!! ACTTTATCATTATGATTATT+AGG - chr1.2:41723833-41723852 None:intergenic 15.0%
!! AGTAATTTCATAGTAATTTA+TGG - chr1.2:41725738-41725757 None:intergenic 15.0%
!! ATAGGTTAATAAAGAAATAA+TGG + chr1.2:41725997-41726016 MS.gene87801:intron 15.0%
!! ATGATTAAACATTTCAATTA+AGG - chr1.2:41722368-41722387 None:intergenic 15.0%
!! TAATTGTTAAAGAGATAAAA+GGG - chr1.2:41722222-41722241 None:intergenic 15.0%
!! TGAAAATATGAAATTTAGTA+AGG + chr1.2:41725795-41725814 MS.gene87801:intron 15.0%
!! TTAATTGTTAAAGAGATAAA+AGG - chr1.2:41722223-41722242 None:intergenic 15.0%
!! TTTAATATTTATTATTGACG+GGG + chr1.2:41723393-41723412 MS.gene87801:intron 15.0%
!!! TTAGTGTTATTATTTACTAT+TGG + chr1.2:41725587-41725606 MS.gene87801:intron 15.0%
!!! TTTTGTAATAATAAAACAAG+TGG + chr1.2:41723537-41723556 MS.gene87801:intron 15.0%
!! AATAGATCATATAATCCTAT+TGG - chr1.2:41724671-41724690 None:intergenic 20.0%
!! AATTGTTAAAGAGATAAAAG+GGG - chr1.2:41722221-41722240 None:intergenic 20.0%
!! ACAATTAAAAGGAATTCAAT+TGG - chr1.2:41725713-41725732 None:intergenic 20.0%
!! CAAGTAAATAAATTGAGTAA+GGG + chr1.2:41723359-41723378 MS.gene87801:intron 20.0%
!! TAAAAGTTTCATGGTAAATT+AGG - chr1.2:41725767-41725786 None:intergenic 20.0%
!! TAAATAAATGTAGAAAGGAA+TGG - chr1.2:41724773-41724792 None:intergenic 20.0%
!! TATCATATAAATTCACGAAT+AGG - chr1.2:41723177-41723196 None:intergenic 20.0%
!! TCAAGTAAATAAATTGAGTA+AGG + chr1.2:41723358-41723377 MS.gene87801:intron 20.0%
!! TTTATAGAATTGAGAAATGT+TGG + chr1.2:41723287-41723306 MS.gene87801:CDS 20.0%
!! TTTGAATTCATACAAATTTC+AGG + chr1.2:41725034-41725053 MS.gene87801:intron 20.0%
!!! AAAATTGATTTTTGGATTCT+TGG - chr1.2:41722567-41722586 None:intergenic 20.0%
!!! AGCTCATTTTCAAAATTTAT+AGG + chr1.2:41724451-41724470 MS.gene87801:intron 20.0%
!!! ATATTTTCACCAATCAAATA+AGG + chr1.2:41725659-41725678 MS.gene87801:intron 20.0%
!!! CAATTTTCAATTTGATGTAT+TGG + chr1.2:41725943-41725962 MS.gene87801:intron 20.0%
!!! TAACTTAATCTAGTTTGTTA+TGG + chr1.2:41722320-41722339 MS.gene87801:intron 20.0%
!!! TGTATTGATTTATTTTGTTC+AGG + chr1.2:41723206-41723225 MS.gene87801:intron 20.0%
!!! TGTATTTAGTTTTTCTCAAA+CGG - chr1.2:41724268-41724287 None:intergenic 20.0%
! AACAACCTACAACATATTAA+TGG + chr1.2:41723862-41723881 MS.gene87801:intron 25.0%
! AACCAACAAGACTATAATAT+AGG + chr1.2:41724060-41724079 MS.gene87801:intron 25.0%
! AATATTTCACTTGAATCACA+AGG - chr1.2:41726133-41726152 None:intergenic 25.0%
! ACAATTTAAAGATAGGAATG+AGG + chr1.2:41723057-41723076 MS.gene87801:CDS 25.0%
! ACCAACAAGACTATAATATA+GGG + chr1.2:41724061-41724080 MS.gene87801:intron 25.0%
! ATTGTTAAAGAGATAAAAGG+GGG - chr1.2:41722220-41722239 None:intergenic 25.0%
! CAATTGCTTGAATTGTAAAA+CGG + chr1.2:41722523-41722542 MS.gene87801:CDS 25.0%
! CCATGGAAAAAAAAAATATG+AGG - chr1.2:41723509-41723528 None:intergenic 25.0%
! CTGATCAACAATTTAAAGAT+AGG + chr1.2:41723050-41723069 MS.gene87801:CDS 25.0%
! TGATTCAAGTGAAATATTTC+AGG + chr1.2:41726135-41726154 MS.gene87801:CDS 25.0%
! TTATTTAAGAGATCACCAAA+TGG - chr1.2:41724895-41724914 None:intergenic 25.0%
! TTGATAGATTTACTTCCATT+TGG + chr1.2:41724877-41724896 MS.gene87801:intron 25.0%
! TTTGTATGCAGTGATTTATT+AGG + chr1.2:41723593-41723612 MS.gene87801:intron 25.0%
!! AAACGACTTTAAAAGTTTCA+TGG - chr1.2:41725776-41725795 None:intergenic 25.0%
!! CTTAATTTTCTGATGATTTC+TGG + chr1.2:41722260-41722279 MS.gene87801:intron 25.0%
!! GTAACAAAGGTACAAATAAA+AGG + chr1.2:41723020-41723039 MS.gene87801:intron 25.0%
!! TAATCCATTCCTTATTTGAT+TGG - chr1.2:41725671-41725690 None:intergenic 25.0%
!! TCCAAAAATCAATTTTCAGT+TGG + chr1.2:41722571-41722590 MS.gene87801:CDS 25.0%
!!! AATATGTTGTAGGTTGTTTT+TGG - chr1.2:41723860-41723879 None:intergenic 25.0%
!!! ATTTTGAAAATGAGCTATTG+AGG - chr1.2:41724447-41724466 None:intergenic 25.0%
!!! CCTCATATTTTTTTTTTCCA+TGG + chr1.2:41723506-41723525 MS.gene87801:intron 25.0%
!!! GTATTTAGTTTTTCTCAAAC+GGG - chr1.2:41724267-41724286 None:intergenic 25.0%
!!! TCTATTTTTACTCGATCAAT+AGG - chr1.2:41725128-41725147 None:intergenic 25.0%
AAAAAAATCAACCTTGTCCA+TGG - chr1.2:41723484-41723503 None:intergenic 30.0%
AACAAACACAACTAGGATAT+AGG + chr1.2:41724481-41724500 MS.gene87801:intron 30.0%
AACCGATAATTTAACCACAA+GGG + chr1.2:41724007-41724026 MS.gene87801:intron 30.0%
AAGGTTACTAATTATCAGCA+AGG - chr1.2:41725219-41725238 None:intergenic 30.0%
AATTCTTCATCGCTAAACAA+AGG - chr1.2:41722047-41722066 None:intergenic 30.0%
ACAACATATTAATGGTGAGA+CGG + chr1.2:41723870-41723889 MS.gene87801:intron 30.0%
ACAAGGATTTAACTACTTCA+CGG + chr1.2:41724324-41724343 MS.gene87801:intron 30.0%
ACCTATAATTGAGGAGTTTA+AGG + chr1.2:41723634-41723653 MS.gene87801:CDS 30.0%
AGAAAATGCCACAAAACATA+AGG + chr1.2:41724544-41724563 MS.gene87801:intron 30.0%
AGAATTGGAAAGCAAAAAAG+TGG + chr1.2:41726255-41726274 MS.gene87801:CDS 30.0%
AGTAAATACACTGTTACATG+TGG + chr1.2:41725279-41725298 MS.gene87801:intron 30.0%
ATAAGGAATGAGGCAAAATA+TGG + chr1.2:41724561-41724580 MS.gene87801:intron 30.0%
ATACAAATTTCAGGAGGAAA+AGG + chr1.2:41725043-41725062 MS.gene87801:intron 30.0%
ATCAAGGATAGGTTATTGAA+AGG + chr1.2:41725185-41725204 MS.gene87801:CDS 30.0%
ATCCCTTGTGGTTAAATTAT+CGG - chr1.2:41724012-41724031 None:intergenic 30.0%
CAAAAGAGAATATCAACACA+AGG + chr1.2:41724307-41724326 MS.gene87801:intron 30.0%
CAACAAGACTATAATATAGG+GGG + chr1.2:41724063-41724082 MS.gene87801:intron 30.0%
CATAATTAGTCCAAGACATA+TGG + chr1.2:41723984-41724003 MS.gene87801:intron 30.0%
CCAACAAGACTATAATATAG+GGG + chr1.2:41724062-41724081 MS.gene87801:intron 30.0%
CCTCAAAAGAATGTTAAGTA+CGG - chr1.2:41724836-41724855 None:intergenic 30.0%
CTCCCTTAGAAATATAACTT+TGG - chr1.2:41725422-41725441 None:intergenic 30.0%
GAAAGATTCAACTAATACGT+TGG - chr1.2:41724350-41724369 None:intergenic 30.0%
GAATTCATACAAATTTCAGG+AGG + chr1.2:41725037-41725056 MS.gene87801:intron 30.0%
GAGCTAAGAAAAAATAGACA+AGG - chr1.2:41725238-41725257 None:intergenic 30.0%
GTAAATACACTGTTACATGT+GGG + chr1.2:41725280-41725299 MS.gene87801:intron 30.0%
TAAGGAATGAGGCAAAATAT+GGG + chr1.2:41724562-41724581 MS.gene87801:intron 30.0%
TACAAATTTCAGGAGGAAAA+GGG + chr1.2:41725044-41725063 MS.gene87801:intron 30.0%
TCAAGATAACAAACACAACT+AGG + chr1.2:41724474-41724493 MS.gene87801:intron 30.0%
TCCATTTCACAAAACACTTT+AGG - chr1.2:41722481-41722500 None:intergenic 30.0%
TCCTTAAACTCCTCAATTAT+AGG - chr1.2:41723638-41723657 None:intergenic 30.0%
TCTCACCATTAATATGTTGT+AGG - chr1.2:41723870-41723889 None:intergenic 30.0%
TGATTATCTTCAAAATCCAC+AGG + chr1.2:41725488-41725507 MS.gene87801:CDS 30.0%
TGTTGTAATGTTGTTGTCAT+TGG + chr1.2:41722427-41722446 MS.gene87801:intron 30.0%
TTAAGTACCTAAAGACATCA+TGG - chr1.2:41725841-41725860 None:intergenic 30.0%
TTCACCAATCAAATAAGGAA+TGG + chr1.2:41725664-41725683 MS.gene87801:intron 30.0%
TTTGTTTAGCGATGAAGAAT+TGG + chr1.2:41722046-41722065 MS.gene87801:CDS 30.0%
! ACGATTCCAATAGATCATTT+TGG + chr1.2:41722764-41722783 MS.gene87801:CDS 30.0%
! CACTTTAGTTGATTCTTTGT+AGG + chr1.2:41724633-41724652 MS.gene87801:intron 30.0%
! GGCCAAAGTTATATTTCTAA+GGG + chr1.2:41725417-41725436 MS.gene87801:CDS 30.0%
! TAACCTATCCTTGATTTTGA+AGG - chr1.2:41725180-41725199 None:intergenic 30.0%
! TGGCCAAAGTTATATTTCTA+AGG + chr1.2:41725416-41725435 MS.gene87801:CDS 30.0%
!! AAATGGATTAAGGATGGAAA+TGG + chr1.2:41722494-41722513 MS.gene87801:CDS 30.0%
!! GCCAACTGAAAATTGATTTT+TGG - chr1.2:41722575-41722594 None:intergenic 30.0%
!! TTTGTGAAATGGATTAAGGA+TGG + chr1.2:41722488-41722507 MS.gene87801:CDS 30.0%
!!! GTGTTTTGTGAAATGGATTA+AGG + chr1.2:41722484-41722503 MS.gene87801:CDS 30.0%
AACTCCTCAATTATAGGTAG+TGG - chr1.2:41723632-41723651 None:intergenic 35.0%
AAGTGATGAAAATCTCATGC+TGG + chr1.2:41726084-41726103 MS.gene87801:CDS 35.0%
ACAAACCTAATAACACGAAC+AGG - chr1.2:41723112-41723131 None:intergenic 35.0%
ACATATTGATGAGGCAGAAT+TGG + chr1.2:41726240-41726259 MS.gene87801:CDS 35.0%
ACGATGTTAGTTGAACAAGT+AGG - chr1.2:41725468-41725487 None:intergenic 35.0%
ACTGAGAGAACAAAGAAATC+AGG + chr1.2:41722707-41722726 MS.gene87801:CDS 35.0%
AGTTGACATTACTGAAAGGA+AGG + chr1.2:41723661-41723680 MS.gene87801:CDS 35.0%
ATAAGAATGCTCCACAAAAG+AGG + chr1.2:41726176-41726195 MS.gene87801:CDS 35.0%
ATAGGATGGAATGTAAGCAA+TGG + chr1.2:41722852-41722871 MS.gene87801:CDS 35.0%
ATCGGTCCAAAATGATCTAT+TGG - chr1.2:41722773-41722792 None:intergenic 35.0%
ATGCAGTTGACATTACTGAA+AGG + chr1.2:41723657-41723676 MS.gene87801:CDS 35.0%
ATTACAAAAACACACGTCCA+TGG - chr1.2:41723526-41723545 None:intergenic 35.0%
CAAAAGAAACTAACAGTGAC+AGG - chr1.2:41722194-41722213 None:intergenic 35.0%
CATGGAAGAACATATTGATG+AGG + chr1.2:41726231-41726250 MS.gene87801:CDS 35.0%
CGATGTTAGTTGAACAAGTA+GGG - chr1.2:41725467-41725486 None:intergenic 35.0%
GAAAAGCTAATGTTGTTGGT+GGG + chr1.2:41722729-41722748 MS.gene87801:CDS 35.0%
GAAAGGGTTATAAAGTTTGC+AGG + chr1.2:41723425-41723444 MS.gene87801:intron 35.0%
GAACCGATAATTTAACCACA+AGG + chr1.2:41724006-41724025 MS.gene87801:intron 35.0%
GAGAAAAACTTGTGTGCAAA+AGG + chr1.2:41724517-41724536 MS.gene87801:intron 35.0%
GCAACTTTGTTGATGTCATT+GGG - chr1.2:41722017-41722036 None:intergenic 35.0%
GGATCATTCTCAGCAATAAT+CGG - chr1.2:41722791-41722810 None:intergenic 35.0%
GTGTTTACCATGATGTCTTT+AGG + chr1.2:41725831-41725850 MS.gene87801:intron 35.0%
GTTCTATTTCATAAGAGTCG+TGG + chr1.2:41723955-41723974 MS.gene87801:intron 35.0%
GTTGACATTACTGAAAGGAA+GGG + chr1.2:41723662-41723681 MS.gene87801:CDS 35.0%
TAGGATGGAATGTAAGCAAT+GGG + chr1.2:41722853-41722872 MS.gene87801:CDS 35.0%
TCAGGAAAAGCTAATGTTGT+TGG + chr1.2:41722725-41722744 MS.gene87801:CDS 35.0%
TCATTGTTGAGAGCTATGAA+CGG + chr1.2:41724923-41724942 MS.gene87801:intron 35.0%
TCCCAATCATAGATTGTAGT+GGG - chr1.2:41721975-41721994 None:intergenic 35.0%
TCCCACTACAATCTATGATT+GGG + chr1.2:41721971-41721990 MS.gene87801:CDS 35.0%
TCCTCTACTGAAAACAACAT+TGG + chr1.2:41722098-41722117 MS.gene87801:CDS 35.0%
TCGAATTTGAAAGTTTGTCG+AGG - chr1.2:41724952-41724971 None:intergenic 35.0%
TGTCCTTCAAAATCAAGGAT+AGG + chr1.2:41725174-41725193 MS.gene87801:CDS 35.0%
TGTTACGCCAGAAGAAAAAA+AGG + chr1.2:41725151-41725170 MS.gene87801:CDS 35.0%
TTCCCAATCATAGATTGTAG+TGG - chr1.2:41721976-41721995 None:intergenic 35.0%
TTCCCACTACAATCTATGAT+TGG + chr1.2:41721970-41721989 MS.gene87801:CDS 35.0%
TTTGCAGGTATTTGTTTGTG+AGG + chr1.2:41723440-41723459 MS.gene87801:CDS 35.0%
! AATCATAGATTGTAGTGGGA+AGG - chr1.2:41721971-41721990 None:intergenic 35.0%
! CCGTACTTAACATTCTTTTG+AGG + chr1.2:41724833-41724852 MS.gene87801:intron 35.0%
! GCTTATTGCAAGTTTTGCAA+AGG - chr1.2:41721923-41721942 None:intergenic 35.0%
!! AAAGGTGTCCTTCAAAATCA+AGG + chr1.2:41725169-41725188 MS.gene87801:CDS 35.0%
!! ATGTATGAAGAACTTGTTGC+TGG + chr1.2:41722074-41722093 MS.gene87801:CDS 35.0%
!! ATTATCGGTTCCATATGTCT+TGG - chr1.2:41723997-41724016 None:intergenic 35.0%
!! CCCCTATATTATAGTCTTGT+TGG - chr1.2:41724065-41724084 None:intergenic 35.0%
!! GCCTAAAGTGTTTTGTGAAA+TGG + chr1.2:41722477-41722496 MS.gene87801:CDS 35.0%
!!! AAGGACACCTTTTTTTCTTC+TGG - chr1.2:41725161-41725180 None:intergenic 35.0%
!!! TCCAATGTTGTTTTCAGTAG+AGG - chr1.2:41722102-41722121 None:intergenic 35.0%
AAAGCAGGAGTGAGATATGA+CGG + chr1.2:41723262-41723281 MS.gene87801:CDS 40.0%
AAGAGGAATGTTTCTCCTTG+TGG - chr1.2:41723234-41723253 None:intergenic 40.0%
AAGGATACTGCTGGTAACAA+AGG + chr1.2:41723007-41723026 MS.gene87801:intron 40.0%
AGAGGAATGTTTCTCCTTGT+GGG - chr1.2:41723233-41723252 None:intergenic 40.0%
AGGATGGAATGTAAGCAATG+GGG + chr1.2:41722854-41722873 MS.gene87801:CDS 40.0%
AGGCAAAAATTGTGTCCACA+TGG - chr1.2:41722461-41722480 None:intergenic 40.0%
AGTAAACATGGCATATGCCA+TGG - chr1.2:41721945-41721964 None:intergenic 40.0%
AGTACTAGTAGTAGTACCTG+TGG - chr1.2:41725507-41725526 None:intergenic 40.0%
ATAGGATCGACAATGTTCAC+CGG - chr1.2:41725110-41725129 None:intergenic 40.0%
ATGAATCAGTCAAACACGAG+TGG + chr1.2:41724407-41724426 MS.gene87801:intron 40.0%
ATTGCTGGTCAAAGTAGTCA+TGG + chr1.2:41722902-41722921 MS.gene87801:CDS 40.0%
CAAAAGAGGAGGAAAGGTAA+TGG + chr1.2:41726190-41726209 MS.gene87801:CDS 40.0%
CATGCTGGATGATAAGATAG+AGG + chr1.2:41726099-41726118 MS.gene87801:CDS 40.0%
CTTACATCAAAGTCCCATGA+TGG - chr1.2:41723692-41723711 None:intergenic 40.0%
GAGAAATGTTGGCGCAAAAT+TGG + chr1.2:41723298-41723317 MS.gene87801:CDS 40.0%
GCAAAACTTGCAATAAGCCA+TGG + chr1.2:41721925-41721944 MS.gene87801:CDS 40.0%
GCCACAAAACATAAGGAATG+AGG + chr1.2:41724551-41724570 MS.gene87801:intron 40.0%
GGAAAAGCTAATGTTGTTGG+TGG + chr1.2:41722728-41722747 MS.gene87801:CDS 40.0%
GGCAACTTTGTTGATGTCAT+TGG - chr1.2:41722018-41722037 None:intergenic 40.0%
GTTTAGCGATGAAGAATTGG+CGG + chr1.2:41722049-41722068 MS.gene87801:CDS 40.0%
TCTTCATCGCTAAACAAAGG+TGG - chr1.2:41722044-41722063 None:intergenic 40.0%
TGAGGCAAAATATGGGATCT+AGG + chr1.2:41724569-41724588 MS.gene87801:intron 40.0%
TTCTGCAAAATCTGCCTTGA+GGG + chr1.2:41725384-41725403 MS.gene87801:CDS 40.0%
TTGAGACTCAGTTGCCAAAA+TGG + chr1.2:41723082-41723101 MS.gene87801:CDS 40.0%
TTGCTGAGAATGATCCAACA+AGG + chr1.2:41722795-41722814 MS.gene87801:CDS 40.0%
! CCTCAATTATAGGTAGTGGT+CGG - chr1.2:41723628-41723647 None:intergenic 40.0%
! CTCAATTATAGGTAGTGGTC+GGG - chr1.2:41723627-41723646 None:intergenic 40.0%
! GCCTCATTCCTTATGTTTTG+TGG - chr1.2:41724555-41724574 None:intergenic 40.0%
! GCTATCCTGTTCGTGTTATT+AGG + chr1.2:41723104-41723123 MS.gene87801:CDS 40.0%
! TATTTTGTTCAGGTCCCACA+AGG + chr1.2:41723216-41723235 MS.gene87801:intron 40.0%
! TCAATTATAGGTAGTGGTCG+GGG - chr1.2:41723626-41723645 None:intergenic 40.0%
! TCAGTCTTGTAACAAGTGTC+AGG - chr1.2:41722692-41722711 None:intergenic 40.0%
! TCATATCTCACTCCTGCTTT+TGG - chr1.2:41723262-41723281 None:intergenic 40.0%
! TTAACCACAAGGGATCGTTT+TGG + chr1.2:41724017-41724036 MS.gene87801:intron 40.0%
! TTACCTTTCCTCCTCTTTTG+TGG - chr1.2:41726190-41726209 None:intergenic 40.0%
!! GGTTCTTGTTGGTGATACAT+GGG + chr1.2:41722826-41722845 MS.gene87801:CDS 40.0%
!! GTTCTTGTTGGTGATACATG+GGG + chr1.2:41722827-41722846 MS.gene87801:CDS 40.0%
!! TACATTGATGACGAAGACCA+CGG + chr1.2:41722953-41722972 MS.gene87801:CDS 40.0%
AAAGGAAGGGTGATCCATCA+TGG + chr1.2:41723675-41723694 MS.gene87801:CDS 45.0%
AACTCCAAAACGATCCCTTG+TGG - chr1.2:41724024-41724043 None:intergenic 45.0%
AAGGAAGGGTGATCCATCAT+GGG + chr1.2:41723676-41723695 MS.gene87801:CDS 45.0%
ACCAAGTTTGACAAGAAGCG+TGG + chr1.2:41724378-41724397 MS.gene87801:intron 45.0%
ACTCTCAGATCTTGCTAGCT+TGG - chr1.2:41722615-41722634 None:intergenic 45.0%
AGAATGATCCAACAAGGAGG+CGG + chr1.2:41722801-41722820 MS.gene87801:CDS 45.0%
AGAATGCTCCACAAAAGAGG+AGG + chr1.2:41726179-41726198 MS.gene87801:CDS 45.0%
ATCGCTAAACAAAGGTGGAC+TGG - chr1.2:41722039-41722058 None:intergenic 45.0%
ATCTATGATTGGGAATGCCC+TGG + chr1.2:41721981-41722000 MS.gene87801:CDS 45.0%
CATAGAATCACTCCAACGAG+AGG + chr1.2:41726024-41726043 MS.gene87801:CDS 45.0%
CCGACCACTACCTATAATTG+AGG + chr1.2:41723625-41723644 MS.gene87801:CDS 45.0%
CGGTGAGTGGTTCCTTTATA+CGG + chr1.2:41722973-41722992 MS.gene87801:CDS 45.0%
CTGAGAATGATCCAACAAGG+AGG + chr1.2:41722798-41722817 MS.gene87801:CDS 45.0%
CTTCTGCAAAATCTGCCTTG+AGG + chr1.2:41725383-41725402 MS.gene87801:CDS 45.0%
GGATTCTTGGTCATCTTTGC+TGG - chr1.2:41722554-41722573 None:intergenic 45.0%
GGTGAGTGGTTCCTTTATAC+GGG + chr1.2:41722974-41722993 MS.gene87801:CDS 45.0%
TATAAAGGAACCACTCACCG+TGG - chr1.2:41722973-41722992 None:intergenic 45.0%
TCCACCACTTAGTAAGAAGC+CGG + chr1.2:41725088-41725107 MS.gene87801:CDS 45.0%
TCCTCTTATGCACCAAAAGC+AGG + chr1.2:41723247-41723266 MS.gene87801:CDS 45.0%
TGATACATGGGGAGATAGGA+TGG + chr1.2:41722838-41722857 MS.gene87801:CDS 45.0%
TGCTCATTTCCCCCATATTG+CGG + chr1.2:41722877-41722896 MS.gene87801:CDS 45.0%
TGGAGCAAGCATTTCTACAG+AGG + chr1.2:41722637-41722656 MS.gene87801:CDS 45.0%
TGGTTCCTTTATACGGGAAG+TGG + chr1.2:41722980-41722999 MS.gene87801:intron 45.0%
TTCCACCACTTCCCGTATAA+AGG - chr1.2:41722988-41723007 None:intergenic 45.0%
TTCCTTTATACGGGAAGTGG+TGG + chr1.2:41722983-41723002 MS.gene87801:intron 45.0%
TTCTCGATACGTCTCTTTGC+AGG - chr1.2:41721889-41721908 None:intergenic 45.0%
TTGCAGAAGTTGTGAGCACA+AGG - chr1.2:41725372-41725391 None:intergenic 45.0%
! AAGAGGAGGAAAGGTAATGG+AGG + chr1.2:41726193-41726212 MS.gene87801:CDS 45.0%
! CACGAACAGGATAGCCATTT+TGG - chr1.2:41723099-41723118 None:intergenic 45.0%
! CATAGATTGTAGTGGGAAGG+AGG - chr1.2:41721968-41721987 None:intergenic 45.0%
! CCAAGTTTGACAAGAAGCGT+GGG + chr1.2:41724379-41724398 MS.gene87801:intron 45.0%
! CTAGCAAGATCTGAGAGTGT+TGG + chr1.2:41722617-41722636 MS.gene87801:CDS 45.0%
! GACGGGGTATCTATGTGAAA+GGG + chr1.2:41723409-41723428 MS.gene87801:intron 45.0%
! TGACGGGGTATCTATGTGAA+AGG + chr1.2:41723408-41723427 MS.gene87801:intron 45.0%
! TTATACGGGAAGTGGTGGAA+AGG + chr1.2:41722988-41723007 MS.gene87801:intron 45.0%
! TTGGTGATACATGGGGAGAT+AGG + chr1.2:41722834-41722853 MS.gene87801:CDS 45.0%
!! AGCACAAGGTGTTGTAAGAG+GGG - chr1.2:41725358-41725377 None:intergenic 45.0%
!! GAGCACAAGGTGTTGTAAGA+GGG - chr1.2:41725359-41725378 None:intergenic 45.0%
!! GGGTTCTTGTTGGTGATACA+TGG + chr1.2:41722825-41722844 MS.gene87801:CDS 45.0%
!! TCATTGGTTCAGACTCCATG+TGG + chr1.2:41722443-41722462 MS.gene87801:intron 45.0%
!! TCCTGCTTTTGGTGCATAAG+AGG - chr1.2:41723251-41723270 None:intergenic 45.0%
!! TGAGCACAAGGTGTTGTAAG+AGG - chr1.2:41725360-41725379 None:intergenic 45.0%
!! TTCACCGGCTTCTTACTAAG+TGG - chr1.2:41725095-41725114 None:intergenic 45.0%
!!! ATAATTTCTTATTTTTTAAT+AGG + chr1.2:41725979-41725998 MS.gene87801:intron 5.0%
AATGATCCAACAAGGAGGCG+GGG + chr1.2:41722803-41722822 MS.gene87801:CDS 50.0%
ACCAGCAATCCCCGCAATAT+GGG - chr1.2:41722891-41722910 None:intergenic 50.0%
AGGCTACGATCACAGCCAAT+AGG + chr1.2:41724653-41724672 MS.gene87801:intron 50.0%
ATCAACCTTGTCCATGGAGC+TGG - chr1.2:41723478-41723497 None:intergenic 50.0%
CAGCTTCCTTGTGACTCCAA+TGG + chr1.2:41721852-41721871 MS.gene87801:CDS 50.0%
CAGTCAGTTGCTCTTTCTGG+CGG + chr1.2:41722929-41722948 MS.gene87801:CDS 50.0%
CATACGCCATTGGAGTCACA+AGG - chr1.2:41721861-41721880 None:intergenic 50.0%
CATTGGGCTGAGAACAACCA+GGG - chr1.2:41722001-41722020 None:intergenic 50.0%
CCAACGAGAGGCTGAACAAA+TGG + chr1.2:41726036-41726055 MS.gene87801:CDS 50.0%
CCATTTGTTCAGCCTCTCGT+TGG - chr1.2:41726039-41726058 None:intergenic 50.0%
CCCACGCTTCTTGTCAAACT+TGG - chr1.2:41724382-41724401 None:intergenic 50.0%
CTAACAGTGACAGGTCTCTC+AGG - chr1.2:41722185-41722204 None:intergenic 50.0%
CTCATTTCCCCCATATTGCG+GGG + chr1.2:41722879-41722898 MS.gene87801:CDS 50.0%
GAATGATCCAACAAGGAGGC+GGG + chr1.2:41722802-41722821 MS.gene87801:CDS 50.0%
GCCAGAAAGAGCAACTGACT+GGG - chr1.2:41722930-41722949 None:intergenic 50.0%
GCTCATTTCCCCCATATTGC+GGG + chr1.2:41722878-41722897 MS.gene87801:CDS 50.0%
GCTCCACAAAAGAGGAGGAA+AGG + chr1.2:41726184-41726203 MS.gene87801:CDS 50.0%
GGCTTCTTACTAAGTGGTGG+AGG - chr1.2:41725089-41725108 None:intergenic 50.0%
GTGGGAAGGAGGAGTAAACA+TGG - chr1.2:41721957-41721976 None:intergenic 50.0%
TCATTGGGCTGAGAACAACC+AGG - chr1.2:41722002-41722021 None:intergenic 50.0%
TGACTCCAATGGCGTATGCA+TGG + chr1.2:41721863-41721882 MS.gene87801:CDS 50.0%
TTCAGGAGGAAAAGGGTTGC+TGG + chr1.2:41725051-41725070 MS.gene87801:intron 50.0%
! ACCGGCTTCTTACTAAGTGG+TGG - chr1.2:41725092-41725111 None:intergenic 50.0%
! AGGAAAAGGGTTGCTGGTTG+TGG + chr1.2:41725057-41725076 MS.gene87801:CDS 50.0%
! AGTCAGTTGCTCTTTCTGGC+GGG + chr1.2:41722930-41722949 MS.gene87801:CDS 50.0%
! AGTGGTGGAAAGGATACTGC+TGG + chr1.2:41722998-41723017 MS.gene87801:intron 50.0%
! TTATAGGTAGTGGTCGGGGA+CGG - chr1.2:41723622-41723641 None:intergenic 50.0%
!! GAGGAAAGGTAATGGAGGCA+AGG + chr1.2:41726198-41726217 MS.gene87801:CDS 50.0%
!!! TGCCTTGAGGGTGTCTTTTC+TGG + chr1.2:41725396-41725415 MS.gene87801:CDS 50.0%
AGGCAAGGCTGTGGTGAACA+TGG + chr1.2:41726213-41726232 MS.gene87801:CDS 55.0%
ATGACGAAGACCACGGTGAG+TGG + chr1.2:41722960-41722979 MS.gene87801:CDS 55.0%
ATGAGCCAGCTCCATGGACA+AGG + chr1.2:41723470-41723489 MS.gene87801:CDS 55.0%
ATGATCCAACAAGGAGGCGG+GGG + chr1.2:41722804-41722823 MS.gene87801:CDS 55.0%
CAGCAATCCCCGCAATATGG+GGG - chr1.2:41722889-41722908 None:intergenic 55.0%
CCAGCAATCCCCGCAATATG+GGG - chr1.2:41722890-41722909 None:intergenic 55.0%
CGCCAGAAAGAGCAACTGAC+TGG - chr1.2:41722931-41722950 None:intergenic 55.0%
GACCAGCAATCCCCGCAATA+TGG - chr1.2:41722892-41722911 None:intergenic 55.0%
GCCCAGTCAGTTGCTCTTTC+TGG + chr1.2:41722926-41722945 MS.gene87801:CDS 55.0%
GGCCAGAAAAGACACCCTCA+AGG - chr1.2:41725401-41725420 None:intergenic 55.0%
GTGACAATGAGCCAGCTCCA+TGG + chr1.2:41723464-41723483 MS.gene87801:CDS 55.0%
! TGCTAGCTTGGCCACACGAA+TGG - chr1.2:41722603-41722622 None:intergenic 55.0%
!! AGGTAATGGAGGCAAGGCTG+TGG + chr1.2:41726204-41726223 MS.gene87801:CDS 55.0%
CCCCATATTGCGGGGATTGC+TGG + chr1.2:41722887-41722906 MS.gene87801:CDS 60.0%
GCAGGCCATGCATACGCCAT+TGG - chr1.2:41721871-41721890 None:intergenic 60.0%
GTTGGCGAACGCCATTCGTG+TGG + chr1.2:41722589-41722608 MS.gene87801:CDS 60.0%
TGATCCAACAAGGAGGCGGG+GGG + chr1.2:41722805-41722824 MS.gene87801:CDS 60.0%
AGAACCCCCCGCCTCCTTGT+TGG - chr1.2:41722812-41722831 None:intergenic 65.0%
AGGAGGCGGGGGGTTCTTGT+TGG + chr1.2:41722815-41722834 MS.gene87801:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 41721831 41726282 41721831 ID=MS.gene87801
chr1.2 mRNA 41721831 41726282 41721831 ID=MS.gene87801.t1;Parent=MS.gene87801
chr1.2 exon 41721831 41722199 41721831 ID=MS.gene87801.t1.exon1;Parent=MS.gene87801.t1
chr1.2 CDS 41721831 41722199 41721831 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41722455 41722998 41722455 ID=MS.gene87801.t1.exon2;Parent=MS.gene87801.t1
chr1.2 CDS 41722455 41722998 41722455 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41723029 41723125 41723029 ID=MS.gene87801.t1.exon3;Parent=MS.gene87801.t1
chr1.2 CDS 41723029 41723125 41723029 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41723228 41723327 41723228 ID=MS.gene87801.t1.exon4;Parent=MS.gene87801.t1
chr1.2 CDS 41723228 41723327 41723228 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41723430 41723491 41723430 ID=MS.gene87801.t1.exon5;Parent=MS.gene87801.t1
chr1.2 CDS 41723430 41723491 41723430 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41723604 41723706 41723604 ID=MS.gene87801.t1.exon6;Parent=MS.gene87801.t1
chr1.2 CDS 41723604 41723706 41723604 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41725056 41725206 41725056 ID=MS.gene87801.t1.exon7;Parent=MS.gene87801.t1
chr1.2 CDS 41725056 41725206 41725056 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41725319 41725509 41725319 ID=MS.gene87801.t1.exon8;Parent=MS.gene87801.t1
chr1.2 CDS 41725319 41725509 41725319 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
chr1.2 exon 41726001 41726282 41726001 ID=MS.gene87801.t1.exon9;Parent=MS.gene87801.t1
chr1.2 CDS 41726001 41726282 41726001 ID=cds.MS.gene87801.t1;Parent=MS.gene87801.t1
Gene Sequence

>MS.gene87801

ATGGAACAAGAGCATAGCAAGCAGCTTCCTTGTGACTCCAATGGCGTATGCATGGCCTGCAAAGAGACGTATCGAGAATTTGAAACTCTCCTTTGCAAAACTTGCAATAAGCCATGGCATATGCCATGTTTACTCCTCCTTCCCACTACAATCTATGATTGGGAATGCCCTGGTTGTTCTCAGCCCAATGACATCAACAAAGTTGCCAGTCCACCTTTGTTTAGCGATGAAGAATTGGCGGAAATGTATGAAGAACTTGTTGCTGGATCCTCTACTGAAAACAACATTGGAAGCAATGTCGTGCTTGATATCTTCAATCGTAGCATTAATTGTTCATACTGCATGAAATTGCCTGAGAGACCTGTCACTGTTAGTTTCTTTTGTTTCCCCCTTTTATCTCTTTAACAATTAAAATTAATAATATTTAGTCTTAATTTTCTGATGATTTCTGGTGACATTACTTTTAATCTTAACATCGAATTAGTTAGATAACTTAATCTAGTTTGTTATGGTTAAGTTATCTAAATGATTCGACCTTAATTGAAATGTTTAATCATTTAGTTTTATAAGAATTATTGTTTGAAATTGATTTTTGTTGTTGTAATGTTGTTGTCATTGGTTCAGACTCCATGTGGACACAATTTTTGCCTAAAGTGTTTTGTGAAATGGATTAAGGATGGAAATGGAAAACGCAATTGCTTGAATTGTAAAACGGTCATTCCAGCAAAGATGACCAAGAATCCAAAAATCAATTTTCAGTTGGCGAACGCCATTCGTGTGGCCAAGCTAGCAAGATCTGAGAGTGTTGGAGCAAGCATTTCTACAGAGGTTTCTCATATCGTTCACGATGATCAGCGTCCTGACACTTGTTACAAGACTGAGAGAACAAAGAAATCAGGAAAAGCTAATGTTGTTGGTGGGAAGATATTTGTGACGATTCCAATAGATCATTTTGGACCGATTATTGCTGAGAATGATCCAACAAGGAGGCGGGGGGTTCTTGTTGGTGATACATGGGGAGATAGGATGGAATGTAAGCAATGGGGTGCTCATTTCCCCCATATTGCGGGGATTGCTGGTCAAAGTAGTCATGGTGCCCAGTCAGTTGCTCTTTCTGGCGGGTACATTGATGACGAAGACCACGGTGAGTGGTTCCTTTATACGGGAAGTGGTGGAAAGGATACTGCTGGTAACAAAGGTACAAATAAAAGGCAATCATCTGATCAACAATTTAAAGATAGGAATGAGGCGTTGAGACTCAGTTGCCAAAATGGCTATCCTGTTCGTGTTATTAGGTTTGTTTTGATTAACTATTATGAATTAGATTCATATGAATTAACTATCCTATTCGTGAATTTATATGATATTTAGTTTATGTATTGATTTATTTTGTTCAGGTCCCACAAGGAGAAACATTCCTCTTATGCACCAAAAGCAGGAGTGAGATATGACGGAGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAAAACAAGTAAGTACAATTATTGTTTGCAATAGTCATTCAAGTAAATAAATTGAGTAAGGGTTTATCAATCATTTAATATTTATTATTGACGGGGTATCTATGTGAAAGGGTTATAAAGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGGTTGATTTTTTTTTCCTCATATTTTTTTTTTCCATGGACGTGTGTTTTTGTAATAATAAAACAAGTGGAAATGTTTAATATGATAACTTGGATCAATTTTGTTTGTATGCAGTGATTTATTAGGAGACCGTCCCCGACCACTACCTATAATTGAGGAGTTTAAGGATGCAGTTGACATTACTGAAAGGAAGGGTGATCCATCATGGGACTTTGATGTAAGTGATGCTGTCTACTTATATGTTTTTCTTATATTTTCTGATGTCTTATAGCATTTACTTCAATTTTGCTCATTACATTTGTTCATTGTATTTTAGACATTATTTTTATAATTTGTATGACCTAATAATCATAATGATAAAGTTTAGCCAAAAACAACCTACAACATATTAATGGTGAGACGGTGCTCAAATTGAGATTAGTCAAACTAGAAATTAAAAAATGTGGGTTAGTCAAATCATTCTTAGTTCTATTTCATAAGAGTCGTGGAAAAGTCATAATTAGTCCAAGACATATGGAACCGATAATTTAACCACAAGGGATCGTTTTGGAGTTTATAGCTTGTCAAGATAACCAACAAGACTATAATATAGGGGGCTTGATCAAAGACATAAACTTGCGTGAAAAAGTACTAGTAAGCGTCGTGAAATAACTAATATGAGTCATAACGAGCGTAGTGAAAAATACAAGAAAAAGTGTCTAAATTGTGTTTTTAAATAAACAAACATAGTCTAATTTTATTTTATTTTTTTATAAATAATATAAGTTTCAAAATCCCGTTTGAGAAAAACTAAATACAAAACACTCTAGATCTAAAACAAAAGAGAATATCAACACAAGGATTTAACTACTTCACGGCCAACGTATTAGTTGAATCTTTCTCATTTCAACCAAGTTTGACAAGAAGCGTGGGAATGTATGAATCAGTCAAACACGAGTGGAATTCGTAATTTGACCTCAATAGCTCATTTTCAAAATTTATAGGTCAAGATAACAAACACAACTAGGATATAGGTAGCATGATCATAGAGAAAAACTTGTGTGCAAAAGGTACTAGAAAATGCCACAAAACATAAGGAATGAGGCAAAATATGGGATCTAGGTTACGTATTTTCAATGAGCTTAGCTGAATATTGAATAATAACACTTTAGTTGATTCTTTGTAGGCTACGATCACAGCCAATAGGATTATATGATCTATTTCATTGTCTATAAATGTCACATGTGCATTATATTTTAAGTACATTAAATCAGAAAACATATTATTTTTCATACATTTATCCATTCCTTTCTACATTTATTTATGTTTTTCTATATTTAGTAATTCACAAAAATCGTTAAACACCGTACTTAACATTCTTTTGAGGAGTTAAAGAACTCGCAACTTATTGATAGATTTACTTCCATTTGGTGATCTCTTAAATAAAAGTATATTCATTGTTGAGAGCTATGAACGGAATCCTCGACAAACTTTCAAATTCGACAACACTAGACAAATGTTATTTTTTTCAAACTTTATATTAAGATTTGTAAGGTCTGTCAGTATTTGAATTCATACAAATTTCAGGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCACCACTTAGTAAGAAGCCGGTGAACATTGTCGATCCTATTGATCGAGTAAAAATAGAAGATGTTACGCCAGAAGAAAAAAAGGTGTCCTTCAAAATCAAGGATAGGTTATTGAAAGGTATATGATCCTTGCTGATAATTAGTAACCTTGTCTATTTTTTCTTAGCTCAATATAGTAGTAAACTTTTTAAGTAAATACACTGTTACATGTGGGTTCAATGTTTTTGTAGAGTTTGTTTGCAATATTTGTCACAACGTGTTAGCTTCCCCTCTTACAACACCTTGTGCTCACAACTTCTGCAAAATCTGCCTTGAGGGTGTCTTTTCTGGCCAAAGTTATATTTCTAAGGGAGAACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTAACATCGTTGATTATCTTCAAAATCCACAGGTACTACTACTAGTACTTTTAAATAGACACATATGAAAGAAAAACATGATTTGAATTTGATATCAATGTTTTTAATATTAGTGTTATTATTTACTATTGGATTGCATTGATTATTTGTTATGTGATTAACTATATTCTTATTATGACTTATATTTTCACCAATCAAATAAGGAATGGATTATTATTTTTCAAATTAATTTCCAATTGAATTCCTTTTAATTGTATCCATAAATTACTATGAAATTACTAGTAATCCTAATTTACCATGAAACTTTTAAAGTCGTTTGAAAATATGAAATTTAGTAAGGAATTTAGTGTTTAGTGTTTACCATGATGTCTTTAGGTACTTAATATTGATGTGTCTATGCATTTGATTATTTTTGAAGTTTTGTTGCAACTATTTAGTCCAATAAACTAATAACTTTTTTAATTGCAATTTTCAATTTGATGTATTGGTGTTATCTGACTTATAATTTCTTATTTTTTAATAGGTTAATAAAGAAATAATGGATGTCATAGAATCACTCCAACGAGAGGCTGAACAAATGGAGAGTTTTGAAGAATTAATTGCTAAAAGTGATGAAAATCTCATGCTGGATGATAAGATAGAGGTTTCAAAACCTTGTGATTCAAGTGAAATATTTCAGGAGAAAATTAATGAGAATGATAAGAATGCTCCACAAAAGAGGAGGAAAGGTAATGGAGGCAAGGCTGTGGTGAACATGGAAGAACATATTGATGAGGCAGAATTGGAAAGCAAAAAAGTGGATTGA
Protein sequence

>MS.gene87801.t1

MEQEHSKQLPCDSNGVCMACKETYREFETLLCKTCNKPWHMPCLLLLPTTIYDWECPGCSQPNDINKVASPPLFSDEELAEMYEELVAGSSTENNIGSNVVLDIFNRSINCSYCMKLPERPVTTPCGHNFCLKCFVKWIKDGNGKRNCLNCKTVIPAKMTKNPKINFQLANAIRVAKLARSESVGASISTEVSHIVHDDQRPDTCYKTERTKKSGKANVVGGKIFVTIPIDHFGPIIAENDPTRRRGVLVGDTWGDRMECKQWGAHFPHIAGIAGQSSHGAQSVALSGGYIDDEDHGEWFLYTGSTNKRQSSDQQFKDRNEALRLSCQNGYPVRVIRSHKEKHSSYAPKAGVRYDGVYRIEKCWRKIGKQGYKVCRYLFVRCDNEPAPWTSDLLGDRPRPLPIIEEFKDAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDRVKIEDVTPEEKKVSFKIKDRLLKEFVCNICHNVLASPLTTPCAHNFCKICLEGVFSGQSYISKGEQKNIMKCPTCSTNIVDYLQNPQVNKEIMDVIESLQREAEQMESFEELIAKSDENLMLDDKIEVSKPCDSSEIFQEKINENDKNAPQKRRKGNGGKAVVNMEEHIDEAELESKKVD