AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39153

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39153.t1 MTR_8g102580 68.619 666 167 7 6 631 2 665 0.0 889
MS.gene39153.t1 MTR_5g098680 64.243 674 193 7 6 633 6 677 0.0 840
MS.gene39153.t1 MTR_3g114910 60.432 417 111 6 38 451 26 391 6.53e-175 503
MS.gene39153.t1 MTR_6g053210 34.302 344 84 7 46 370 5 225 2.38e-45 164
MS.gene39153.t1 MTR_6g053210 60.000 75 30 0 559 633 235 309 2.12e-18 87.0
MS.gene39153.t1 MTR_1g035420 36.667 150 84 3 247 385 217 366 4.67e-17 85.5
MS.gene39153.t1 MTR_8g070070 38.562 153 80 4 247 385 325 477 1.28e-16 84.3
MS.gene39153.t1 MTR_6g061270 33.333 186 104 6 247 414 223 406 2.85e-16 83.2
MS.gene39153.t1 MTR_7g088370 34.194 155 88 4 247 390 263 414 7.01e-16 81.6
MS.gene39153.t1 MTR_8g071030 35.948 153 84 3 247 385 305 457 2.37e-15 80.1
MS.gene39153.t1 MTR_8g070075 34.641 153 86 4 247 385 318 470 7.19e-15 78.6
MS.gene39153.t1 MTR_6g061200 31.414 191 111 6 247 419 223 411 7.32e-15 78.6
MS.gene39153.t1 MTR_4g010550 33.784 148 87 3 247 386 49 193 1.20e-12 70.9
MS.gene39153.t1 MTR_1g035400 34.211 152 87 5 247 385 134 285 4.63e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39153.t1 AT1G57820 52.451 612 228 10 8 563 6 610 0.0 641
MS.gene39153.t1 AT1G57820 52.451 612 228 10 8 563 6 610 0.0 641
MS.gene39153.t1 AT1G57820 52.545 609 229 10 8 563 6 607 0.0 641
MS.gene39153.t1 AT5G39550 52.094 597 224 14 8 560 6 584 0.0 606
MS.gene39153.t1 AT1G66040 51.864 590 225 13 8 553 6 580 0.0 592
MS.gene39153.t1 AT1G66050 51.525 590 227 12 8 553 6 580 0.0 590
MS.gene39153.t1 AT1G57800 48.534 614 237 15 6 548 4 609 0.0 572
MS.gene39153.t1 AT1G57800 48.287 613 236 15 6 548 4 605 0.0 566
MS.gene39153.t1 AT4G08590 47.598 458 181 12 8 438 6 431 2.14e-137 409
MS.gene39153.t1 AT4G08590 47.484 457 182 12 8 438 6 430 9.93e-137 408
MS.gene39153.t1 AT4G08590 47.191 445 176 12 8 425 6 418 7.24e-131 391
MS.gene39153.t1 AT4G08590 45.721 409 163 12 8 389 6 382 5.75e-113 344
MS.gene39153.t1 AT4G08590 44.156 385 157 11 8 366 6 358 1.25e-100 311
MS.gene39153.t1 AT4G08590 44.156 385 157 11 8 366 6 358 1.25e-100 311
MS.gene39153.t1 AT2G35160 31.128 257 124 10 204 439 307 531 3.45e-16 82.8
MS.gene39153.t1 AT2G35160 31.128 257 124 10 204 439 343 567 4.06e-16 82.8
MS.gene39153.t1 AT2G35160 31.128 257 124 10 204 439 343 567 4.06e-16 82.8
MS.gene39153.t1 AT2G35160 31.128 257 124 10 204 439 343 567 4.06e-16 82.8
MS.gene39153.t1 AT2G35160 31.128 257 124 10 204 439 343 567 4.06e-16 82.8
MS.gene39153.t1 AT2G33290 37.086 151 82 5 247 386 211 359 1.17e-15 81.3
MS.gene39153.t1 AT2G33290 37.086 151 82 5 247 386 211 359 1.17e-15 81.3
MS.gene39153.t1 AT2G33290 37.086 151 82 5 247 386 211 359 1.17e-15 81.3
MS.gene39153.t1 AT2G33290 37.086 151 82 5 247 386 211 359 1.17e-15 81.3
MS.gene39153.t1 AT5G04940 35.849 159 85 5 247 391 215 370 2.08e-15 80.5
MS.gene39153.t1 AT5G04940 35.849 159 85 5 247 391 215 370 2.08e-15 80.5
MS.gene39153.t1 AT2G22740 34.194 155 86 4 247 386 334 487 1.41e-14 77.8
MS.gene39153.t1 AT2G22740 34.194 155 86 4 247 386 334 487 1.41e-14 77.8
MS.gene39153.t1 AT5G13960 33.537 164 90 4 247 393 153 314 4.26e-14 75.9
MS.gene39153.t1 AT4G13460 32.821 195 114 7 247 426 209 401 5.12e-14 75.9
MS.gene39153.t1 AT4G13460 32.821 195 114 7 247 426 209 401 5.12e-14 75.9
MS.gene39153.t1 AT5G13960 34.395 157 84 4 247 386 19 173 5.97e-14 75.1
MS.gene39153.t1 AT1G73100 34.641 153 83 5 247 386 212 360 2.97e-12 70.1

Find 156 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCAGTCAGTTGCTCTTTC+TGG 0.065244 1.1:-41581441 MS.gene39153:CDS
ACCTATAATTCAGGAGTTTA+AGG 0.146808 1.1:-41580725 MS.gene39153:CDS
ACGATTCCAATAGATCATTT+TGG 0.199264 1.1:-41581603 MS.gene39153:CDS
CGGTGAGTGGTTCCTTTATA+CGG 0.252259 1.1:-41581394 MS.gene39153:CDS
GAGAAATGTTGGCGCAAAAT+TGG 0.255568 1.1:-41581069 MS.gene39153:CDS
GCTATCCTGTTCGTGTTATA+AGG 0.262250 1.1:-41581263 MS.gene39153:intron
GACCAGCAATCCCCGCAATA+TGG 0.265157 1.1:+41581478 None:intergenic
TCATATCTCACTCCTGCTTT+TGG 0.274714 1.1:+41581108 None:intergenic
GGATTCTTGGTCATCTTTGC+TGG 0.275592 1.1:+41581816 None:intergenic
CCCCATATTGCGGGGATTGC+TGG 0.290706 1.1:-41581480 MS.gene39153:CDS
TTCCACCACTTCCCGTATAA+AGG 0.309213 1.1:+41581382 None:intergenic
ATAGATTAATAAAGAAATAA+TGG 0.309643 1.1:-41578380 MS.gene39153:intron
TCCTTAAACTCCTGAATTAT+AGG 0.310622 1.1:+41580724 None:intergenic
GGCAACTTTGTTGATGTCAT+TGG 0.316463 1.1:+41582346 None:intergenic
GTAACAAAGGTACCAATAAA+AGG 0.321560 1.1:-41581347 MS.gene39153:intron
TTGGTATGCAGTGATTTATT+AGG 0.326326 1.1:-41580766 MS.gene39153:intron
TTCTCGATACGTCTCTTTGC+AGG 0.326727 1.1:+41582475 None:intergenic
ATCGGTCCAAAATGATCTAT+TGG 0.338198 1.1:+41581597 None:intergenic
AAATATTGATGAGGAGGAAT+TGG 0.338442 1.1:-41578137 MS.gene39153:CDS
GATAGGGTTATAAAGTTTGC+AGG 0.357866 1.1:-41580933 MS.gene39153:intron
GCAACTTTGTTGATGTCATT+GGG 0.371718 1.1:+41582347 None:intergenic
CCGACCACTACCTATAATTC+AGG 0.374768 1.1:-41580734 MS.gene39153:CDS
TTTGTTTAGCGATGAAGAAT+TGG 0.375796 1.1:-41582315 MS.gene39153:CDS
CTGATCAACAATTTAAAGAT+AGG 0.376098 1.1:-41581317 MS.gene39153:CDS
TTCAGGAGGAAAAGGGTTGC+TGG 0.389484 1.1:-41579330 MS.gene39153:intron
TTCTGCAAAGTCTGCCTTGA+GGG 0.390533 1.1:-41578997 MS.gene39153:CDS
ATACAAATTTCAGGAGGAAA+AGG 0.391935 1.1:-41579338 MS.gene39153:intron
TTCCCACTACAATCTATGAT+TGG 0.394717 1.1:-41582391 MS.gene39153:CDS
GAGTTCTTGTTGGTGATACA+TGG 0.402754 1.1:-41581542 MS.gene39153:CDS
TCCATTTCACAAAACACTTT+AGG 0.413839 1.1:+41581889 None:intergenic
CTCCCTTCGAAATATAACTT+TGG 0.415102 1.1:+41578962 None:intergenic
TTTATAGAATTGAGAAATGT+TGG 0.416474 1.1:-41581080 MS.gene39153:CDS
AAATGGATTAAGGATGGAAA+TGG 0.436348 1.1:-41581873 MS.gene39153:CDS
CCAACGAGAGGCTGAACAAA+TGG 0.436811 1.1:-41578341 MS.gene39153:CDS
CTGAATTATAGGTAGTGGTC+GGG 0.437762 1.1:+41580735 None:intergenic
AGGAAAAGGGTTGCTGGTTG+TGG 0.439545 1.1:-41579324 MS.gene39153:CDS
ACTGAGAGAACAAAGAAATC+AGG 0.444069 1.1:-41581660 MS.gene39153:CDS
TGATACATGGGGAGATAGGA+TGG 0.447018 1.1:-41581529 MS.gene39153:CDS
CGCCAGAAAGAGCAACTGAC+TGG 0.449819 1.1:+41581439 None:intergenic
ACCAGCAATCCCCGCAATAT+GGG 0.450678 1.1:+41581479 None:intergenic
TAGGATGGAATGTAAGCAAT+GGG 0.454356 1.1:-41581514 MS.gene39153:CDS
ATGTATGAAGAACTTGTTGC+TGG 0.459347 1.1:-41582287 MS.gene39153:CDS
ACAAACCTTATAACACGAAC+AGG 0.459522 1.1:+41581258 None:intergenic
ATCAACCTTGTCCATGGAGC+TGG 0.459843 1.1:+41580883 None:intergenic
GGATCATTCTCAGCAATAAT+CGG 0.463917 1.1:+41581579 None:intergenic
CCATTTGTTCAGCCTCTCGT+TGG 0.465410 1.1:+41578341 None:intergenic
TCCCACTACAATCTATGATT+GGG 0.467641 1.1:-41582390 MS.gene39153:CDS
TACAAATTTCAGGAGGAAAA+GGG 0.470573 1.1:-41579337 MS.gene39153:intron
TTAAGACTCAGTTGCCGAAA+AGG 0.475099 1.1:-41581285 MS.gene39153:CDS
ACTCTCAGATCTTGCTAGCT+TGG 0.479913 1.1:+41581755 None:intergenic
GGAACCACTCACCGTGGTCT+TGG 0.481822 1.1:+41581403 None:intergenic
AGAATGATCCCACAAGGAGC+CGG 0.486386 1.1:-41581566 MS.gene39153:CDS
AGTCAGTTGCTCTTTCTGGC+GGG 0.488233 1.1:-41581437 MS.gene39153:CDS
AGTTCTTGTTGGTGATACAT+GGG 0.491236 1.1:-41581541 MS.gene39153:CDS
TCAGTCTTGTAACAAGTGTC+AGG 0.494666 1.1:+41581678 None:intergenic
GAATGATCCCACAAGGAGCC+GGG 0.495959 1.1:-41581565 MS.gene39153:CDS
TGACCACAAGGTGTTGTAAG+AGG 0.498084 1.1:+41579024 None:intergenic
AGAGGAATGTTTCTCCTTGT+GGG 0.498560 1.1:+41581137 None:intergenic
TTTGTGAAATGGATTAAGGA+TGG 0.502978 1.1:-41581879 MS.gene39153:CDS
CAATTGCTTGAATTGTAAAA+CGG 0.503895 1.1:-41581844 MS.gene39153:CDS
AAAGGTGTCCTTCAAAATCA+AGG 0.505676 1.1:-41579212 MS.gene39153:CDS
AACTCCTGAATTATAGGTAG+TGG 0.509776 1.1:+41580730 None:intergenic
TCCTCTTATGCACCAAAAGC+AGG 0.513587 1.1:-41581120 MS.gene39153:CDS
TAAAAGAAACTAACAGTGAC+AGG 0.516862 1.1:+41582170 None:intergenic
TGCTAGCTTGGCCACACGAA+TGG 0.520546 1.1:+41581767 None:intergenic
GCAGGCCATGCATACGCCAT+TGG 0.521132 1.1:+41582493 None:intergenic
AAAGGAAAGATGATCCATCA+TGG 0.523766 1.1:-41580684 MS.gene39153:CDS
AGAACTCCCCGGCTCCTTGT+GGG 0.526260 1.1:+41581558 None:intergenic
CATTAATTGTTCATACTGCA+TGG 0.526428 1.1:-41582207 MS.gene39153:CDS
AAGAGGAATGTTTCTCCTTG+TGG 0.526594 1.1:+41581136 None:intergenic
TGGCCAAAGTTATATTTCGA+AGG 0.527796 1.1:-41578965 MS.gene39153:CDS
CGATGTTAGTTGAACAAGTA+GGG 0.527869 1.1:+41578917 None:intergenic
GTTTAGCGATGAAGAATTGG+CGG 0.530457 1.1:-41582312 MS.gene39153:CDS
ATCGCTAAACAAAGGTGGAC+TGG 0.533268 1.1:+41582325 None:intergenic
TCCTCTACTGAAAACAACAT+TGG 0.535789 1.1:-41582263 MS.gene39153:CDS
AAGAGGAGGAAAGGTAATGA+AGG 0.536156 1.1:-41578184 MS.gene39153:CDS
GGTGAGTGGTTCCTTTATAC+GGG 0.536258 1.1:-41581393 MS.gene39153:CDS
AAGAACTCCCCGGCTCCTTG+TGG 0.537187 1.1:+41581557 None:intergenic
CAGTCAGTTGCTCTTTCTGG+CGG 0.537914 1.1:-41581438 MS.gene39153:CDS
CTAGCAAGATCTGAGAGTGT+TGG 0.540174 1.1:-41581750 MS.gene39153:CDS
GGCCAAAGTTATATTTCGAA+GGG 0.540414 1.1:-41578964 MS.gene39153:CDS
AGGAGCCGGGGAGTTCTTGT+TGG 0.542015 1.1:-41581552 MS.gene39153:CDS
ACCGGCTTCTTACTAAGTGG+TGG 0.542915 1.1:+41579292 None:intergenic
ATCTGAATGCTCCACAAAAG+AGG 0.543212 1.1:-41578201 MS.gene39153:CDS
CATGCTGGATGATAAGATAG+AGG 0.543827 1.1:-41578278 MS.gene39153:CDS
GGAAGAAAATATTGATGAGG+AGG 0.546941 1.1:-41578143 MS.gene39153:CDS
GGAAAAGCTAATGCTGTTGG+TGG 0.547850 1.1:-41581639 MS.gene39153:CDS
GAGGAAAGGTAATGAAGGCA+AGG 0.549733 1.1:-41578179 MS.gene39153:CDS
AAGTGATGAAAATCTCATGC+TGG 0.552999 1.1:-41578293 MS.gene39153:CDS
GGCTTCTTACTAAGTGGTGG+AGG 0.553420 1.1:+41579295 None:intergenic
GACCACAAGGTGTTGTAAGA+GGG 0.558238 1.1:+41579025 None:intergenic
TGATTATCTTCAAAATCCAC+AGG 0.558282 1.1:-41578893 MS.gene39153:intron
TTGGTGATACATGGGGAGAT+AGG 0.560509 1.1:-41581533 MS.gene39153:CDS
CCAGCAATCCCCGCAATATG+GGG 0.562661 1.1:+41581480 None:intergenic
AGGTAATGAAGGCAAGGTTG+TGG 0.563364 1.1:-41578173 MS.gene39153:CDS
CTTACATCAAAGTCCCATGA+TGG 0.566094 1.1:+41580670 None:intergenic
TCAGGAAAAGCTAATGCTGT+TGG 0.566282 1.1:-41581642 MS.gene39153:CDS
CAGCTTCCTTGTGACTCCAA+TGG 0.569846 1.1:-41582509 MS.gene39153:CDS
GCAAAACTTGCAATAAGCCA+TGG 0.571037 1.1:-41582436 MS.gene39153:CDS
TCCACCACTTAGTAAGAAGC+CGG 0.572237 1.1:-41579293 MS.gene39153:CDS
GCCAGAAAGAGCAACTGACT+GGG 0.572445 1.1:+41581440 None:intergenic
CATTGGTTCAGACTCCCTGC+GGG 0.574057 1.1:-41581923 MS.gene39153:intron
TGTCCTTCAAAATCAAGGAT+AGG 0.577288 1.1:-41579207 MS.gene39153:CDS
ATCAAGGATAGGTTATTGAA+AGG 0.579801 1.1:-41579196 MS.gene39153:intron
CCTGAATTATAGGTAGTGGT+CGG 0.580206 1.1:+41580734 None:intergenic
CATAGATTGTAGTGGGAAGG+AGG 0.581188 1.1:+41582396 None:intergenic
AGGCAAGGTTGTGGTGAACA+TGG 0.583775 1.1:-41578164 MS.gene39153:CDS
TGACTCCAATGGCGTATGCA+TGG 0.584830 1.1:-41582498 MS.gene39153:CDS
TCCCAATCATAGATTGTAGT+GGG 0.591503 1.1:+41582389 None:intergenic
GTTGGCGAACGCCATTCGTG+TGG 0.592073 1.1:-41581778 MS.gene39153:CDS
ACAATTTAAAGATAGGAATG+AGG 0.592075 1.1:-41581310 MS.gene39153:CDS
GTGACAATGAGCCAGCTCCA+TGG 0.592691 1.1:-41580894 MS.gene39153:CDS
GCTCCACAAAAGAGGAGGAA+AGG 0.592739 1.1:-41578193 MS.gene39153:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 1.1:-41580888 MS.gene39153:intron
TTTGCAGGTATTTGTTTGTG+AGG 0.596884 1.1:-41580918 MS.gene39153:CDS
TTCACCGGCTTCTTACTAAG+TGG 0.597288 1.1:+41579289 None:intergenic
ATCTATGATTGGGAATGCCC+TGG 0.598470 1.1:-41582380 MS.gene39153:CDS
AAGGAAAGATGATCCATCAT+GGG 0.600210 1.1:-41580683 MS.gene39153:CDS
CATGGAAGAAAATATTGATG+AGG 0.602211 1.1:-41578146 MS.gene39153:CDS
TCTTCATCGCTAAACAAAGG+TGG 0.604543 1.1:+41582320 None:intergenic
TTGCAGAAGTTGTGACCACA+AGG 0.604643 1.1:+41579012 None:intergenic
ATGACCAAGACCACGGTGAG+TGG 0.606110 1.1:-41581407 MS.gene39153:CDS
AGTAAACATGGCATATGCCA+TGG 0.607296 1.1:+41582419 None:intergenic
ATAGGATGGAATGTAAGCAA+TGG 0.609099 1.1:-41581515 MS.gene39153:CDS
AATCATAGATTGTAGTGGGA+AGG 0.610898 1.1:+41582393 None:intergenic
TTCCCAATCATAGATTGTAG+TGG 0.613702 1.1:+41582388 None:intergenic
AAAGCAGGAGTGAGATATGA+CGG 0.615626 1.1:-41581105 MS.gene39153:CDS
ATGCAATTGACATTACTGAA+AGG 0.617829 1.1:-41580702 MS.gene39153:CDS
ACGATGTTAGTTGAACAAGT+AGG 0.620801 1.1:+41578916 None:intergenic
TGAATTATAGGTAGTGGTCG+GGG 0.621301 1.1:+41580736 None:intergenic
ATTGCTGGTCAAAGTAGTCA+AGG 0.624322 1.1:-41581465 MS.gene39153:CDS
TGGAGCAAGCATTTCTACAG+AGG 0.629773 1.1:-41581730 MS.gene39153:CDS
ACCACAAGGTGTTGTAAGAG+GGG 0.630182 1.1:+41579026 None:intergenic
CAGCAATCCCCGCAATATGG+GGG 0.636776 1.1:+41581481 None:intergenic
AATGATCCCACAAGGAGCCG+GGG 0.636852 1.1:-41581564 MS.gene39153:CDS
AATATTTCACTTGAATCACA+AGG 0.638799 1.1:+41578247 None:intergenic
GGCCAGAAAAGACACCCTCA+AGG 0.639715 1.1:+41578983 None:intergenic
TCCCCTCTTACAACACCTTG+TGG 0.640076 1.1:-41579027 MS.gene39153:CDS
TTATAGGTAGTGGTCGGGGA+CGG 0.640704 1.1:+41580740 None:intergenic
ATAGGATCGACAATGTTCAC+CGG 0.641647 1.1:+41579274 None:intergenic
GAAAAGCTAATGCTGTTGGT+GGG 0.642612 1.1:-41581638 MS.gene39153:CDS
AATTCTTCATCGCTAAACAA+AGG 0.645742 1.1:+41582317 None:intergenic
GTTCTTGTTGGTGATACATG+GGG 0.647436 1.1:-41581540 MS.gene39153:CDS
TCATTGGTTCAGACTCCCTG+CGG 0.648413 1.1:-41581924 MS.gene39153:intron
CTTCTGCAAAGTCTGCCTTG+AGG 0.654282 1.1:-41578998 MS.gene39153:CDS
CATAGAATCACTCCAACGAG+AGG 0.656194 1.1:-41578353 MS.gene39153:CDS
TACATTGATGACCAAGACCA+CGG 0.659343 1.1:-41581414 MS.gene39153:CDS
TGAATGCTCCACAAAAGAGG+AGG 0.660195 1.1:-41578198 MS.gene39153:CDS
CATACGCCATTGGAGTCACA+AGG 0.662456 1.1:+41582503 None:intergenic
TCATTGGGCTGAGAACAACC+AGG 0.663523 1.1:+41582362 None:intergenic
GTGGGAAGGAGGAGTAAACA+TGG 0.666201 1.1:+41582407 None:intergenic
TATCACCAACAAGAACTCCC+CGG 0.673704 1.1:+41581547 None:intergenic
TTGCTGAGAATGATCCCACA+AGG 0.705515 1.1:-41581572 MS.gene39153:CDS
CATTGGGCTGAGAACAACCA+GGG 0.719376 1.1:+41582363 None:intergenic
TATAAAGGAACCACTCACCG+TGG 0.734894 1.1:+41581397 None:intergenic
AGGATGGAATGTAAGCAATG+GGG 0.764192 1.1:-41581513 MS.gene39153:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATTAATAAAGAAATAA+TGG - chr1.1:41582261-41582280 MS.gene39153:CDS 10.0%
!!! ATTTTTAAAAAGATAAAAAG+GGG + chr1.1:41578500-41578519 None:intergenic 10.0%
!!! TAAAAAAGTTATTAGTTTAT+TGG + chr1.1:41582182-41582201 None:intergenic 10.0%
!!! TAATTTAATCTAGTTTATTA+TGG - chr1.1:41578594-41578613 MS.gene39153:intron 10.0%
!! AAACATAAATAAATGTAGAA+AGG + chr1.1:41581038-41581057 None:intergenic 15.0%
!! AAATGTTTAATATGATAACT+TGG - chr1.1:41579842-41579861 MS.gene39153:intron 15.0%
!! ACTTTATATTAAGATTTGTA+AGG - chr1.1:41581261-41581280 MS.gene39153:intron 15.0%
!! TGAAAATATGAAATTTAGAA+AGG - chr1.1:41582055-41582074 MS.gene39153:intron 15.0%
!!! CTAAATTTCATATTTTCAAA+TGG + chr1.1:41582053-41582072 None:intergenic 15.0%
!!! TTAATGTTATTATTTGCTAT+TGG - chr1.1:41581847-41581866 MS.gene39153:CDS 15.0%
!!! TTTTGTAATAATAAAACAAG+TGG - chr1.1:41579819-41579838 MS.gene39153:intron 15.0%
!! AATTTGTGGATACAATTAAA+AGG + chr1.1:41581984-41582003 None:intergenic 20.0%
!! ACTTTATCATTATGATTATC+AGG + chr1.1:41580115-41580134 None:intergenic 20.0%
!! ATTCGATATTTATTATTGAC+GGG - chr1.1:41579673-41579692 MS.gene39153:intron 20.0%
!! CAATTAAAAGGAATTCAATA+TGG + chr1.1:41581972-41581991 None:intergenic 20.0%
!! CATTCGATATTTATTATTGA+CGG - chr1.1:41579672-41579691 MS.gene39153:intron 20.0%
!! TAAAAGTTTCATGGTAAATT+AGG + chr1.1:41582027-41582046 None:intergenic 20.0%
!! TAAATAAATGTAGAAAGGAA+TGG + chr1.1:41581033-41581052 None:intergenic 20.0%
!! TAACAAACAAACTAGAATAT+AGG - chr1.1:41580741-41580760 MS.gene39153:CDS 20.0%
!! TATCATATATATTCACGAAT+AGG + chr1.1:41579451-41579470 None:intergenic 20.0%
!! TTTATAGAATTGAGAAATGT+TGG - chr1.1:41579561-41579580 MS.gene39153:intron 20.0%
!! TTTGAATTCATACAAATTTC+AGG - chr1.1:41581294-41581313 MS.gene39153:CDS 20.0%
!!! AAAATTGATTTTTGGATTCT+TGG + chr1.1:41578841-41578860 None:intergenic 20.0%
!!! AAATGGTTTTAAAAGTTTCA+TGG + chr1.1:41582036-41582055 None:intergenic 20.0%
!!! AGCTCATTTTCAAAATTTAT+AGG - chr1.1:41580712-41580731 MS.gene39153:CDS 20.0%
!!! CAATTTTCAATTTGATGTAT+TGG - chr1.1:41582206-41582225 MS.gene39153:CDS 20.0%
!!! TGATTCAAGTGAAATATTTT+TGG - chr1.1:41582399-41582418 MS.gene39153:CDS 20.0%
!!! TGTATTGATTTATTTTGTTC+AGG - chr1.1:41579480-41579499 MS.gene39153:intron 20.0%
!!! TGTATTTAGTTTTTCTCAAA+CGG + chr1.1:41580536-41580555 None:intergenic 20.0%
! AACAACCTACAACATATTAA+TGG - chr1.1:41580144-41580163 MS.gene39153:intron 25.0%
! AACCAACAAGACTATAATAT+AGG - chr1.1:41580331-41580350 MS.gene39153:intron 25.0%
! AATATTTCACTTGAATCACA+AGG + chr1.1:41582397-41582416 None:intergenic 25.0%
! AATTGAAATGTGCAAACATT+TGG - chr1.1:41578643-41578662 MS.gene39153:intron 25.0%
! ACAATTTAAAGATAGGAATG+AGG - chr1.1:41579331-41579350 MS.gene39153:intron 25.0%
! ACCAACAAGACTATAATATA+GGG - chr1.1:41580332-41580351 MS.gene39153:intron 25.0%
! AGTAATTTCGTAGTAATTTG+TGG + chr1.1:41581998-41582017 None:intergenic 25.0%
! CAATTGCTTGAATTGTAAAA+CGG - chr1.1:41578797-41578816 MS.gene39153:intron 25.0%
! CTGATCAACAATTTAAAGAT+AGG - chr1.1:41579324-41579343 MS.gene39153:CDS 25.0%
! TAATCCCTTCATTATTTGAT+TGG + chr1.1:41581931-41581950 None:intergenic 25.0%
! TCCATGGAAAAAAAAATATG+AGG + chr1.1:41579792-41579811 None:intergenic 25.0%
! TTATTTAAGAGATCACCAAA+TGG + chr1.1:41581155-41581174 None:intergenic 25.0%
! TTCACCAATCAAATAATGAA+GGG - chr1.1:41581924-41581943 MS.gene39153:intron 25.0%
! TTCGATATTTATTATTGACG+GGG - chr1.1:41579674-41579693 MS.gene39153:intron 25.0%
! TTGTTAGATTTACTTCCATT+TGG - chr1.1:41581137-41581156 MS.gene39153:CDS 25.0%
! TTTCACCAATCAAATAATGA+AGG - chr1.1:41581923-41581942 MS.gene39153:intron 25.0%
! TTTCACCATTAATATGTTGT+AGG + chr1.1:41580152-41580171 None:intergenic 25.0%
!! ATAACTTGGATCAATTTTGT+TGG - chr1.1:41579856-41579875 MS.gene39153:intron 25.0%
!! TCCAAAAATCAATTTTCAGT+TGG - chr1.1:41578845-41578864 MS.gene39153:intron 25.0%
!!! AATATGTTGTAGGTTGTTTT+TGG + chr1.1:41580142-41580161 None:intergenic 25.0%
!!! ATTTTGAAAATGAGCTATTG+AGG + chr1.1:41580708-41580727 None:intergenic 25.0%
!!! GTATTTAGTTTTTCTCAAAC+GGG + chr1.1:41580535-41580554 None:intergenic 25.0%
!!! TCCTCATATTTTTTTTTCCA+TGG - chr1.1:41579788-41579807 MS.gene39153:intron 25.0%
!!! TCTATTTTTACTCGATCAAT+AGG + chr1.1:41581388-41581407 None:intergenic 25.0%
AAAAAAATCAACCTTGTCCA+TGG + chr1.1:41579767-41579786 None:intergenic 30.0%
AAACTAGAAATTGACAAACG+TGG - chr1.1:41580184-41580203 MS.gene39153:intron 30.0%
AAATATTGATGAGGAGGAAT+TGG - chr1.1:41582504-41582523 MS.gene39153:CDS 30.0%
AACAGATCATACAATCCTAT+TGG + chr1.1:41580931-41580950 None:intergenic 30.0%
AACCGATAATTTAACCACAA+GGG - chr1.1:41580278-41580297 MS.gene39153:intron 30.0%
AACTAGAAATTGACAAACGT+GGG - chr1.1:41580185-41580204 MS.gene39153:intron 30.0%
AAGGTTACTAATTATCAGCA+AGG + chr1.1:41581479-41581498 None:intergenic 30.0%
AATTCTTCATCGCTAAACAA+AGG + chr1.1:41578327-41578346 None:intergenic 30.0%
ACCTATAATTCAGGAGTTTA+AGG - chr1.1:41579916-41579935 MS.gene39153:intron 30.0%
AGAAAATGCCACAAAACATA+AGG - chr1.1:41580804-41580823 MS.gene39153:intron 30.0%
AGTAAATACACTGTTACATG+TGG - chr1.1:41581539-41581558 MS.gene39153:CDS 30.0%
ATAAATTGAGTAAGACCTAG+TGG - chr1.1:41579640-41579659 MS.gene39153:intron 30.0%
ATAAGGAATGAGGCAAAATA+TGG - chr1.1:41580821-41580840 MS.gene39153:intron 30.0%
ATACAAATTTCAGGAGGAAA+AGG - chr1.1:41581303-41581322 MS.gene39153:CDS 30.0%
ATCAAGGATAGGTTATTGAA+AGG - chr1.1:41581445-41581464 MS.gene39153:CDS 30.0%
ATCCCTTGTGGTTAAATTAT+CGG + chr1.1:41580283-41580302 None:intergenic 30.0%
ATGCAATTGACATTACTGAA+AGG - chr1.1:41579939-41579958 MS.gene39153:intron 30.0%
CAACAAGACTATAATATAGG+GGG - chr1.1:41580334-41580353 MS.gene39153:intron 30.0%
CATAATTAGTCCAAGACATA+TGG - chr1.1:41580255-41580274 MS.gene39153:intron 30.0%
CATGGAAGAAAATATTGATG+AGG - chr1.1:41582495-41582514 MS.gene39153:CDS 30.0%
CATTAATTGTTCATACTGCA+TGG - chr1.1:41578434-41578453 MS.gene39153:intron 30.0%
CCAACAAGACTATAATATAG+GGG - chr1.1:41580333-41580352 MS.gene39153:intron 30.0%
CCTCAAAAGAATGTTAAGTA+CGG + chr1.1:41581096-41581115 None:intergenic 30.0%
GAAAGATTCAACTAATACGT+TGG + chr1.1:41580611-41580630 None:intergenic 30.0%
GAATTCATACAAATTTCAGG+AGG - chr1.1:41581297-41581316 MS.gene39153:CDS 30.0%
GAGCTAAGAAAAAATAGACA+AGG + chr1.1:41581498-41581517 None:intergenic 30.0%
GGAATTGGAAAGCAAAAAAA+TGG - chr1.1:41582519-41582538 MS.gene39153:CDS 30.0%
GTAAATACACTGTTACATGT+GGG - chr1.1:41581540-41581559 MS.gene39153:CDS 30.0%
TAAAAGAAACTAACAGTGAC+AGG + chr1.1:41578474-41578493 None:intergenic 30.0%
TAAGGAATGAGGCAAAATAT+GGG - chr1.1:41580822-41580841 MS.gene39153:intron 30.0%
TACAAATTTCAGGAGGAAAA+GGG - chr1.1:41581304-41581323 MS.gene39153:CDS 30.0%
TCCATTTCACAAAACACTTT+AGG + chr1.1:41578755-41578774 None:intergenic 30.0%
TCCTTAAACTCCTGAATTAT+AGG + chr1.1:41579920-41579939 None:intergenic 30.0%
TGATTATCTTCAAAATCCAC+AGG - chr1.1:41581748-41581767 MS.gene39153:CDS 30.0%
TGCTGTAATGTTGTTATCAT+TGG - chr1.1:41578701-41578720 MS.gene39153:intron 30.0%
TTGGTATGCAGTGATTTATT+AGG - chr1.1:41579875-41579894 MS.gene39153:intron 30.0%
TTTGTTTAGCGATGAAGAAT+TGG - chr1.1:41578326-41578345 MS.gene39153:CDS 30.0%
! ACGATTCCAATAGATCATTT+TGG - chr1.1:41579038-41579057 MS.gene39153:CDS 30.0%
! ATCAGATGATTGCCTTTTAT+TGG + chr1.1:41579309-41579328 None:intergenic 30.0%
! CACTTTAGTTGATTCTTTGT+AGG - chr1.1:41580893-41580912 MS.gene39153:CDS 30.0%
! TAACCTATCCTTGATTTTGA+AGG + chr1.1:41581440-41581459 None:intergenic 30.0%
! TCTAAAACAAAAGAGACACA+AGG - chr1.1:41580568-41580587 MS.gene39153:intron 30.0%
!! AAATGGATTAAGGATGGAAA+TGG - chr1.1:41578768-41578787 MS.gene39153:intron 30.0%
!! GCCAACTGAAAATTGATTTT+TGG + chr1.1:41578849-41578868 None:intergenic 30.0%
!! GTAACAAAGGTACCAATAAA+AGG - chr1.1:41579294-41579313 MS.gene39153:CDS 30.0%
!! TTTGTGAAATGGATTAAGGA+TGG - chr1.1:41578762-41578781 MS.gene39153:intron 30.0%
!!! GTGTTTTGTGAAATGGATTA+AGG - chr1.1:41578758-41578777 MS.gene39153:intron 30.0%
AAAGGAAAGATGATCCATCA+TGG - chr1.1:41579957-41579976 MS.gene39153:intron 35.0%
AACTCCTGAATTATAGGTAG+TGG + chr1.1:41579914-41579933 None:intergenic 35.0%
AAGATTAAAAGCAACGTCAC+CGG + chr1.1:41578556-41578575 None:intergenic 35.0%
AAGGAAAGATGATCCATCAT+GGG - chr1.1:41579958-41579977 MS.gene39153:intron 35.0%
AAGTGATGAAAATCTCATGC+TGG - chr1.1:41582348-41582367 MS.gene39153:CDS 35.0%
AATACTAGTAGTAGTACCTG+TGG + chr1.1:41581767-41581786 None:intergenic 35.0%
ACAAACCTTATAACACGAAC+AGG + chr1.1:41579386-41579405 None:intergenic 35.0%
ACGATGTTAGTTGAACAAGT+AGG + chr1.1:41581728-41581747 None:intergenic 35.0%
ACTGAGAGAACAAAGAAATC+AGG - chr1.1:41578981-41579000 MS.gene39153:CDS 35.0%
ATAGGATGGAATGTAAGCAA+TGG - chr1.1:41579126-41579145 MS.gene39153:intron 35.0%
ATCGGTCCAAAATGATCTAT+TGG + chr1.1:41579047-41579066 None:intergenic 35.0%
ATGAATCAGTTAAACACGAG+TGG - chr1.1:41580668-41580687 MS.gene39153:intron 35.0%
ATTACAAAAACACACGTCCA+TGG + chr1.1:41579808-41579827 None:intergenic 35.0%
CGAATGATTGATAAACCACT+AGG + chr1.1:41579658-41579677 None:intergenic 35.0%
CGATGTTAGTTGAACAAGTA+GGG + chr1.1:41581727-41581746 None:intergenic 35.0%
CTCCCTTCGAAATATAACTT+TGG + chr1.1:41581682-41581701 None:intergenic 35.0%
GAACCGATAATTTAACCACA+AGG - chr1.1:41580277-41580296 MS.gene39153:intron 35.0%
GAGAAAAACTTGTGTGCAAA+AGG - chr1.1:41580777-41580796 MS.gene39153:intron 35.0%
GATAGGGTTATAAAGTTTGC+AGG - chr1.1:41579708-41579727 MS.gene39153:intron 35.0%
GCAACTTTGTTGATGTCATT+GGG + chr1.1:41578297-41578316 None:intergenic 35.0%
GGAAGAAAATATTGATGAGG+AGG - chr1.1:41582498-41582517 MS.gene39153:CDS 35.0%
GGATCATTCTCAGCAATAAT+CGG + chr1.1:41579065-41579084 None:intergenic 35.0%
GGCCAAAGTTATATTTCGAA+GGG - chr1.1:41581677-41581696 MS.gene39153:CDS 35.0%
TAGGATGGAATGTAAGCAAT+GGG - chr1.1:41579127-41579146 MS.gene39153:intron 35.0%
TCATTGTTGAGAGCTATGAA+CGG - chr1.1:41581183-41581202 MS.gene39153:intron 35.0%
TCCCAATCATAGATTGTAGT+GGG + chr1.1:41578255-41578274 None:intergenic 35.0%
TCCCACTACAATCTATGATT+GGG - chr1.1:41578251-41578270 MS.gene39153:CDS 35.0%
TCCTCTACTGAAAACAACAT+TGG - chr1.1:41578378-41578397 MS.gene39153:CDS 35.0%
TCGAATTTGAAAGTTTGTCG+AGG + chr1.1:41581212-41581231 None:intergenic 35.0%
TGGCCAAAGTTATATTTCGA+AGG - chr1.1:41581676-41581695 MS.gene39153:CDS 35.0%
TGTCCTTCAAAATCAAGGAT+AGG - chr1.1:41581434-41581453 MS.gene39153:CDS 35.0%
TGTTACGCCAGAAGAAAAAA+AGG - chr1.1:41581411-41581430 MS.gene39153:CDS 35.0%
TTCCCAATCATAGATTGTAG+TGG + chr1.1:41578256-41578275 None:intergenic 35.0%
TTCCCACTACAATCTATGAT+TGG - chr1.1:41578250-41578269 MS.gene39153:CDS 35.0%
TTTGCAGGTATTTGTTTGTG+AGG - chr1.1:41579723-41579742 MS.gene39153:intron 35.0%
! AATCATAGATTGTAGTGGGA+AGG + chr1.1:41578251-41578270 None:intergenic 35.0%
! CCGTACTTAACATTCTTTTG+AGG - chr1.1:41581093-41581112 MS.gene39153:CDS 35.0%
! GCTTATTGCAAGTTTTGCAA+AGG + chr1.1:41578203-41578222 None:intergenic 35.0%
! TTAACCACAAGGGATCATTT+TGG - chr1.1:41580288-41580307 MS.gene39153:intron 35.0%
!! AAAGGTGTCCTTCAAAATCA+AGG - chr1.1:41581429-41581448 MS.gene39153:CDS 35.0%
!! AGTTCTTGTTGGTGATACAT+GGG - chr1.1:41579100-41579119 MS.gene39153:intron 35.0%
!! ATGTATGAAGAACTTGTTGC+TGG - chr1.1:41578354-41578373 MS.gene39153:CDS 35.0%
!! ATTATCGGTTCCATATGTCT+TGG + chr1.1:41580268-41580287 None:intergenic 35.0%
!! CCCCTATATTATAGTCTTGT+TGG + chr1.1:41580336-41580355 None:intergenic 35.0%
!! CTTACTTTTCTGACGATTTC+CGG - chr1.1:41578534-41578553 MS.gene39153:intron 35.0%
!! GCCTAAAGTGTTTTGTGAAA+TGG - chr1.1:41578751-41578770 MS.gene39153:intron 35.0%
!!! AAGGACACCTTTTTTTCTTC+TGG + chr1.1:41581421-41581440 None:intergenic 35.0%
!!! TCCAATGTTGTTTTCAGTAG+AGG + chr1.1:41578382-41578401 None:intergenic 35.0%
AAAGCAGGAGTGAGATATGA+CGG - chr1.1:41579536-41579555 MS.gene39153:intron 40.0%
AACTCCAAAATGATCCCTTG+TGG + chr1.1:41580295-41580314 None:intergenic 40.0%
AAGAGGAATGTTTCTCCTTG+TGG + chr1.1:41579508-41579527 None:intergenic 40.0%
AAGAGGAGGAAAGGTAATGA+AGG - chr1.1:41582457-41582476 MS.gene39153:CDS 40.0%
AAGGATACTGCTGGTAACAA+AGG - chr1.1:41579281-41579300 MS.gene39153:CDS 40.0%
AGAGGAATGTTTCTCCTTGT+GGG + chr1.1:41579507-41579526 None:intergenic 40.0%
AGGATGGAATGTAAGCAATG+GGG - chr1.1:41579128-41579147 MS.gene39153:intron 40.0%
AGTAAACATGGCATATGCCA+TGG + chr1.1:41578225-41578244 None:intergenic 40.0%
ATAGGATCGACAATGTTCAC+CGG + chr1.1:41581370-41581389 None:intergenic 40.0%
ATCTGAATGCTCCACAAAAG+AGG - chr1.1:41582440-41582459 MS.gene39153:CDS 40.0%
ATTGCTGGTCAAAGTAGTCA+AGG - chr1.1:41579176-41579195 MS.gene39153:intron 40.0%
CATGCTGGATGATAAGATAG+AGG - chr1.1:41582363-41582382 MS.gene39153:CDS 40.0%
CTTACATCAAAGTCCCATGA+TGG + chr1.1:41579974-41579993 None:intergenic 40.0%
GAAAAGCTAATGCTGTTGGT+GGG - chr1.1:41579003-41579022 MS.gene39153:CDS 40.0%
GAGAAATGTTGGCGCAAAAT+TGG - chr1.1:41579572-41579591 MS.gene39153:intron 40.0%
GCAAAACTTGCAATAAGCCA+TGG - chr1.1:41578205-41578224 MS.gene39153:CDS 40.0%
GCCACAAAACATAAGGAATG+AGG - chr1.1:41580811-41580830 MS.gene39153:intron 40.0%
GCTATCCTGTTCGTGTTATA+AGG - chr1.1:41579378-41579397 MS.gene39153:intron 40.0%
GGCAACTTTGTTGATGTCAT+TGG + chr1.1:41578298-41578317 None:intergenic 40.0%
GTTTAGCGATGAAGAATTGG+CGG - chr1.1:41578329-41578348 MS.gene39153:CDS 40.0%
TCAGGAAAAGCTAATGCTGT+TGG - chr1.1:41578999-41579018 MS.gene39153:CDS 40.0%
TCTTCATCGCTAAACAAAGG+TGG + chr1.1:41578324-41578343 None:intergenic 40.0%
TGAGGCAAAATATGGGATCT+AGG - chr1.1:41580829-41580848 MS.gene39153:intron 40.0%
TTAAGACTCAGTTGCCGAAA+AGG - chr1.1:41579356-41579375 MS.gene39153:intron 40.0%
! CCTGAATTATAGGTAGTGGT+CGG + chr1.1:41579910-41579929 None:intergenic 40.0%
! CTGAATTATAGGTAGTGGTC+GGG + chr1.1:41579909-41579928 None:intergenic 40.0%
! GCCTCATTCCTTATGTTTTG+TGG + chr1.1:41580815-41580834 None:intergenic 40.0%
! TACATTGATGACCAAGACCA+CGG - chr1.1:41579227-41579246 MS.gene39153:CDS 40.0%
! TATTTTGTTCAGGTCCCACA+AGG - chr1.1:41579490-41579509 MS.gene39153:intron 40.0%
! TCAGTCTTGTAACAAGTGTC+AGG + chr1.1:41578966-41578985 None:intergenic 40.0%
! TCATATCTCACTCCTGCTTT+TGG + chr1.1:41579536-41579555 None:intergenic 40.0%
! TGAATTATAGGTAGTGGTCG+GGG + chr1.1:41579908-41579927 None:intergenic 40.0%
! TTACCTTTCCTCCTCTTTTG+TGG + chr1.1:41582454-41582473 None:intergenic 40.0%
!! GAGTTCTTGTTGGTGATACA+TGG - chr1.1:41579099-41579118 MS.gene39153:intron 40.0%
!! GTTCTTGTTGGTGATACATG+GGG - chr1.1:41579101-41579120 MS.gene39153:intron 40.0%
ACTCTCAGATCTTGCTAGCT+TGG + chr1.1:41578889-41578908 None:intergenic 45.0%
AGGTAATGAAGGCAAGGTTG+TGG - chr1.1:41582468-41582487 MS.gene39153:CDS 45.0%
ATCGCTAAACAAAGGTGGAC+TGG + chr1.1:41578319-41578338 None:intergenic 45.0%
ATCTATGATTGGGAATGCCC+TGG - chr1.1:41578261-41578280 MS.gene39153:CDS 45.0%
CATAGAATCACTCCAACGAG+AGG - chr1.1:41582288-41582307 MS.gene39153:CDS 45.0%
CCGACCACTACCTATAATTC+AGG - chr1.1:41579907-41579926 MS.gene39153:intron 45.0%
CGGTGAGTGGTTCCTTTATA+CGG - chr1.1:41579247-41579266 MS.gene39153:CDS 45.0%
GAGGAAAGGTAATGAAGGCA+AGG - chr1.1:41582462-41582481 MS.gene39153:CDS 45.0%
GGAAAAGCTAATGCTGTTGG+TGG - chr1.1:41579002-41579021 MS.gene39153:CDS 45.0%
GGATTCTTGGTCATCTTTGC+TGG + chr1.1:41578828-41578847 None:intergenic 45.0%
GGTGAGTGGTTCCTTTATAC+GGG - chr1.1:41579248-41579267 MS.gene39153:CDS 45.0%
GTTCAGTTTCACAAGAGTCG+TGG - chr1.1:41580226-41580245 MS.gene39153:intron 45.0%
TATAAAGGAACCACTCACCG+TGG + chr1.1:41579247-41579266 None:intergenic 45.0%
TATCACCAACAAGAACTCCC+CGG + chr1.1:41579097-41579116 None:intergenic 45.0%
TCCACCACTTAGTAAGAAGC+CGG - chr1.1:41581348-41581367 MS.gene39153:intron 45.0%
TCCTCTTATGCACCAAAAGC+AGG - chr1.1:41579521-41579540 MS.gene39153:intron 45.0%
TGAATGCTCCACAAAAGAGG+AGG - chr1.1:41582443-41582462 MS.gene39153:CDS 45.0%
TGATACATGGGGAGATAGGA+TGG - chr1.1:41579112-41579131 MS.gene39153:intron 45.0%
TGCTCATTTCCCCCATATTG+CGG - chr1.1:41579151-41579170 MS.gene39153:intron 45.0%
TGGAGCAAGCATTTCTACAG+AGG - chr1.1:41578911-41578930 MS.gene39153:CDS 45.0%
TGGTTCCTTTATACGGGAAG+TGG - chr1.1:41579254-41579273 MS.gene39153:CDS 45.0%
TTCCACCACTTCCCGTATAA+AGG + chr1.1:41579262-41579281 None:intergenic 45.0%
TTCCTTTATACGGGAAGTGG+TGG - chr1.1:41579257-41579276 MS.gene39153:CDS 45.0%
TTCTCGATACGTCTCTTTGC+AGG + chr1.1:41578169-41578188 None:intergenic 45.0%
TTCTGCAAAGTCTGCCTTGA+GGG - chr1.1:41581644-41581663 MS.gene39153:CDS 45.0%
TTGCAGAAGTTGTGACCACA+AGG + chr1.1:41581632-41581651 None:intergenic 45.0%
TTGCTGAGAATGATCCCACA+AGG - chr1.1:41579069-41579088 MS.gene39153:intron 45.0%
! ACGGGGTATCTATGTGTGAT+AGG - chr1.1:41579691-41579710 MS.gene39153:intron 45.0%
! CACGAACAGGATAGCCTTTT+CGG + chr1.1:41579373-41579392 None:intergenic 45.0%
! CATAGATTGTAGTGGGAAGG+AGG + chr1.1:41578248-41578267 None:intergenic 45.0%
! CGGGGTATCTATGTGTGATA+GGG - chr1.1:41579692-41579711 MS.gene39153:intron 45.0%
! CTAGCAAGATCTGAGAGTGT+TGG - chr1.1:41578891-41578910 MS.gene39153:intron 45.0%
! TTATACGGGAAGTGGTGGAA+AGG - chr1.1:41579262-41579281 MS.gene39153:CDS 45.0%
! TTGGTGATACATGGGGAGAT+AGG - chr1.1:41579108-41579127 MS.gene39153:intron 45.0%
!! ACCACAAGGTGTTGTAAGAG+GGG + chr1.1:41581618-41581637 None:intergenic 45.0%
!! GACCACAAGGTGTTGTAAGA+GGG + chr1.1:41581619-41581638 None:intergenic 45.0%
!! TCCTGCTTTTGGTGCATAAG+AGG + chr1.1:41579525-41579544 None:intergenic 45.0%
!! TGACCACAAGGTGTTGTAAG+AGG + chr1.1:41581620-41581639 None:intergenic 45.0%
!! TTCACCGGCTTCTTACTAAG+TGG + chr1.1:41581355-41581374 None:intergenic 45.0%
!!! AATTTTTAAAAAGATAAAAA+GGG + chr1.1:41578501-41578520 None:intergenic 5.0%
!!! TAATTTTTAAAAAGATAAAA+AGG + chr1.1:41578502-41578521 None:intergenic 5.0%
ACCAAGTTTGACGAGAAGCG+TGG - chr1.1:41580639-41580658 MS.gene39153:intron 50.0%
ACCAGCAATCCCCGCAATAT+GGG + chr1.1:41579165-41579184 None:intergenic 50.0%
AGAATGATCCCACAAGGAGC+CGG - chr1.1:41579075-41579094 MS.gene39153:intron 50.0%
AGGCAAAAATTGTGCCCGCA+GGG + chr1.1:41578735-41578754 None:intergenic 50.0%
AGGCAAGGTTGTGGTGAACA+TGG - chr1.1:41582477-41582496 MS.gene39153:CDS 50.0%
AGGCTACGATCACAGCCAAT+AGG - chr1.1:41580913-41580932 MS.gene39153:CDS 50.0%
ATCAACCTTGTCCATGGAGC+TGG + chr1.1:41579761-41579780 None:intergenic 50.0%
CAGCTTCCTTGTGACTCCAA+TGG - chr1.1:41578132-41578151 MS.gene39153:CDS 50.0%
CAGTCAGTTGCTCTTTCTGG+CGG - chr1.1:41579203-41579222 MS.gene39153:CDS 50.0%
CATACGCCATTGGAGTCACA+AGG + chr1.1:41578141-41578160 None:intergenic 50.0%
CATTGGGCTGAGAACAACCA+GGG + chr1.1:41578281-41578300 None:intergenic 50.0%
CCAACGAGAGGCTGAACAAA+TGG - chr1.1:41582300-41582319 MS.gene39153:CDS 50.0%
CCATTTGTTCAGCCTCTCGT+TGG + chr1.1:41582303-41582322 None:intergenic 50.0%
CTCATTTCCCCCATATTGCG+GGG - chr1.1:41579153-41579172 MS.gene39153:intron 50.0%
CTTCTGCAAAGTCTGCCTTG+AGG - chr1.1:41581643-41581662 MS.gene39153:CDS 50.0%
GCCAGAAAGAGCAACTGACT+GGG + chr1.1:41579204-41579223 None:intergenic 50.0%
GCTCATTTCCCCCATATTGC+GGG - chr1.1:41579152-41579171 MS.gene39153:intron 50.0%
GCTCCACAAAAGAGGAGGAA+AGG - chr1.1:41582448-41582467 MS.gene39153:CDS 50.0%
GGCTTCTTACTAAGTGGTGG+AGG + chr1.1:41581349-41581368 None:intergenic 50.0%
GTGGGAAGGAGGAGTAAACA+TGG + chr1.1:41578237-41578256 None:intergenic 50.0%
TAGGCAAAAATTGTGCCCGC+AGG + chr1.1:41578736-41578755 None:intergenic 50.0%
TCATTGGGCTGAGAACAACC+AGG + chr1.1:41578282-41578301 None:intergenic 50.0%
TCCCCTCTTACAACACCTTG+TGG - chr1.1:41581614-41581633 MS.gene39153:CDS 50.0%
TGACTCCAATGGCGTATGCA+TGG - chr1.1:41578143-41578162 MS.gene39153:CDS 50.0%
TTCAGGAGGAAAAGGGTTGC+TGG - chr1.1:41581311-41581330 MS.gene39153:CDS 50.0%
! ACCGGCTTCTTACTAAGTGG+TGG + chr1.1:41581352-41581371 None:intergenic 50.0%
! AGGAAAAGGGTTGCTGGTTG+TGG - chr1.1:41581317-41581336 MS.gene39153:CDS 50.0%
! AGTCAGTTGCTCTTTCTGGC+GGG - chr1.1:41579204-41579223 MS.gene39153:CDS 50.0%
! AGTGGTGGAAAGGATACTGC+TGG - chr1.1:41579272-41579291 MS.gene39153:CDS 50.0%
! CCAAGTTTGACGAGAAGCGT+GGG - chr1.1:41580640-41580659 MS.gene39153:intron 50.0%
! TTATAGGTAGTGGTCGGGGA+CGG + chr1.1:41579904-41579923 None:intergenic 50.0%
!! TCATTGGTTCAGACTCCCTG+CGG - chr1.1:41578717-41578736 MS.gene39153:intron 50.0%
!!! TGCCTTGAGGGTGTCTTTTC+TGG - chr1.1:41581656-41581675 MS.gene39153:CDS 50.0%
AATGATCCCACAAGGAGCCG+GGG - chr1.1:41579077-41579096 MS.gene39153:intron 55.0%
ATGACCAAGACCACGGTGAG+TGG - chr1.1:41579234-41579253 MS.gene39153:CDS 55.0%
ATGAGCCAGCTCCATGGACA+AGG - chr1.1:41579753-41579772 MS.gene39153:intron 55.0%
CAGCAATCCCCGCAATATGG+GGG + chr1.1:41579163-41579182 None:intergenic 55.0%
CCAGCAATCCCCGCAATATG+GGG + chr1.1:41579164-41579183 None:intergenic 55.0%
CCCACGCTTCTCGTCAAACT+TGG + chr1.1:41580643-41580662 None:intergenic 55.0%
CGCCAGAAAGAGCAACTGAC+TGG + chr1.1:41579205-41579224 None:intergenic 55.0%
GAATGATCCCACAAGGAGCC+GGG - chr1.1:41579076-41579095 MS.gene39153:intron 55.0%
GACCAGCAATCCCCGCAATA+TGG + chr1.1:41579166-41579185 None:intergenic 55.0%
GCCCAGTCAGTTGCTCTTTC+TGG - chr1.1:41579200-41579219 MS.gene39153:CDS 55.0%
GGCCAGAAAAGACACCCTCA+AGG + chr1.1:41581661-41581680 None:intergenic 55.0%
GTGACAATGAGCCAGCTCCA+TGG - chr1.1:41579747-41579766 MS.gene39153:intron 55.0%
! TGCTAGCTTGGCCACACGAA+TGG + chr1.1:41578877-41578896 None:intergenic 55.0%
!! CATTGGTTCAGACTCCCTGC+GGG - chr1.1:41578718-41578737 MS.gene39153:intron 55.0%
AAGAACTCCCCGGCTCCTTG+TGG + chr1.1:41579087-41579106 None:intergenic 60.0%
AGAACTCCCCGGCTCCTTGT+GGG + chr1.1:41579086-41579105 None:intergenic 60.0%
AGGAGCCGGGGAGTTCTTGT+TGG - chr1.1:41579089-41579108 MS.gene39153:intron 60.0%
CCCCATATTGCGGGGATTGC+TGG - chr1.1:41579161-41579180 MS.gene39153:intron 60.0%
GCAGGCCATGCATACGCCAT+TGG + chr1.1:41578151-41578170 None:intergenic 60.0%
GGAACCACTCACCGTGGTCT+TGG + chr1.1:41579241-41579260 None:intergenic 60.0%
GTTGGCGAACGCCATTCGTG+TGG - chr1.1:41578863-41578882 MS.gene39153:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 41578111 41582552 41578111 ID=MS.gene39153
chr1.1 mRNA 41578111 41582552 41578111 ID=MS.gene39153.t1;Parent=MS.gene39153
chr1.1 exon 41582184 41582552 41582184 ID=MS.gene39153.t1.exon1;Parent=MS.gene39153.t1
chr1.1 CDS 41582184 41582552 41582184 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41581391 41581934 41581391 ID=MS.gene39153.t1.exon2;Parent=MS.gene39153.t1
chr1.1 CDS 41581391 41581934 41581391 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41581264 41581360 41581264 ID=MS.gene39153.t1.exon3;Parent=MS.gene39153.t1
chr1.1 CDS 41581264 41581360 41581264 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41581062 41581161 41581062 ID=MS.gene39153.t1.exon4;Parent=MS.gene39153.t1
chr1.1 CDS 41581062 41581161 41581062 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41580889 41580950 41580889 ID=MS.gene39153.t1.exon5;Parent=MS.gene39153.t1
chr1.1 CDS 41580889 41580950 41580889 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41580675 41580777 41580675 ID=MS.gene39153.t1.exon6;Parent=MS.gene39153.t1
chr1.1 CDS 41580675 41580777 41580675 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41579197 41579347 41579197 ID=MS.gene39153.t1.exon7;Parent=MS.gene39153.t1
chr1.1 CDS 41579197 41579347 41579197 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41578894 41579084 41578894 ID=MS.gene39153.t1.exon8;Parent=MS.gene39153.t1
chr1.1 CDS 41578894 41579084 41578894 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
chr1.1 exon 41578111 41578398 41578111 ID=MS.gene39153.t1.exon9;Parent=MS.gene39153.t1
chr1.1 CDS 41578111 41578398 41578111 ID=cds.MS.gene39153.t1;Parent=MS.gene39153.t1
Gene Sequence

>MS.gene39153

ATGGAACAAGAGCATAGCAAGCAGCTTCCTTGTGACTCCAATGGCGTATGCATGGCCTGCAAAGAGACGTATCGAGAATTTGAAACTCTCCTTTGCAAAACTTGCAATAAGCCATGGCATATGCCATGTTTACTCCTCCTTCCCACTACAATCTATGATTGGGAATGCCCTGGTTGTTCTCAGCCCAATGACATCAACAAAGTTGCCAGTCCACCTTTGTTTAGCGATGAAGAATTGGCGGAAATGTATGAAGAACTTGTTGCTGGATCCTCTACTGAAAACAACATTGGAAGCAATGTCGTGCTTGATATCTTTGATCGTAGCATTAATTGTTCATACTGCATGGAATTGCTTGAGAAGCCTGTCACTGTTAGTTTCTTTTATTTCCCCTTTTTATCTTTTTAAAAATTAATAATATTTAGTCTTACTTTTCTGACGATTTCCGGTGACGTTGCTTTTAATCTTAACATTGAATTATTTAGATAATTTAATCTAGTTTATTATGGTTAAGTTATCTAAATGATTCGATCTTAATTGAAATGTGCAAACATTTGGTTTTATAAGAATTATTGTTTGAAATTGATTTTTCTTGCTGTAATGTTGTTATCATTGGTTCAGACTCCCTGCGGGCACAATTTTTGCCTAAAGTGTTTTGTGAAATGGATTAAGGATGGAAATGGAAAACGCAATTGCTTGAATTGTAAAACGGTCATTCCAGCAAAGATGACCAAGAATCCAAAAATCAATTTTCAGTTGGCGAACGCCATTCGTGTGGCCAAGCTAGCAAGATCTGAGAGTGTTGGAGCAAGCATTTCTACAGAGGTTTCTCATATTGTTCACGATGATCAGCGTCCTGACACTTGTTACAAGACTGAGAGAACAAAGAAATCAGGAAAAGCTAATGCTGTTGGTGGGAAGATATTTGTGACGATTCCAATAGATCATTTTGGACCGATTATTGCTGAGAATGATCCCACAAGGAGCCGGGGAGTTCTTGTTGGTGATACATGGGGAGATAGGATGGAATGTAAGCAATGGGGTGCTCATTTCCCCCATATTGCGGGGATTGCTGGTCAAAGTAGTCAAGGTGCCCAGTCAGTTGCTCTTTCTGGCGGGTACATTGATGACCAAGACCACGGTGAGTGGTTCCTTTATACGGGAAGTGGTGGAAAGGATACTGCTGGTAACAAAGGTACCAATAAAAGGCAATCATCTGATCAACAATTTAAAGATAGGAATGAGGCGTTAAGACTCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTATAAGGTTTGTTTTGATTAACTATTATGAATTAGATTCATATGAATTAACTATCCTATTCGTGAATATATATGATATTTAGTTTATGTATTGATTTATTTTGTTCAGGTCCCACAAGGAGAAACATTCCTCTTATGCACCAAAAGCAGGAGTGAGATATGACGGAGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAAAACAAGTAAGTACAATTATTTTGTGCAATAGTTATTCAAGTAAATAAATTGAGTAAGACCTAGTGGTTTATCAATCATTCGATATTTATTATTGACGGGGTATCTATGTGTGATAGGGTTATAAAGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGGTTGATTTTTTTTTCCTCATATTTTTTTTTCCATGGACGTGTGTTTTTGTAATAATAAAACAAGTGGAAATGTTTAATATGATAACTTGGATCAATTTTGTTGGTATGCAGTGATTTATTAGGAGACCGTCCCCGACCACTACCTATAATTCAGGAGTTTAAGGATGCAATTGACATTACTGAAAGGAAAGATGATCCATCATGGGACTTTGATGTAAGTGATGTTGTCTACTTATATGTTTTTCTTATATTTTCTAATGTCTTATAGCATTTACTTCAATTTTGTTCATTACATCTGTTCATTGTATTTTAGAAATTATTTTTGTAATTTGTATGACCTGATAATCATAATGATAAAGTTTAGCCAAAAACAACCTACAACATATTAATGGTGAAATTGAGATTAGTCAAACTAGAAATTGACAAACGTGGGTTAGTCAAATCATTCTTAGTTCAGTTTCACAAGAGTCGTGGAAAAGTCATAATTAGTCCAAGACATATGGAACCGATAATTTAACCACAAGGGATCATTTTGGAGTTTATAGCTCGTCAAGATAACCAACAAGACTATAATATAGGGGGCTTGATCAAAGACATAAACTTGCATGAAAAAGTACTAGTAATAAGTGTCGTGAAATAACTAATATGAGTCATAATTGAACGTAGTGAAAAATACAAGAAAAAGTGTCTAAATTGTGTTTTTAAATAAACAAACATAGTCTAAAAAATATTTTATAATTAATATAAGTTTCAAAAACCCGTTTGAGAAAAACTAAATACAAAACACTTTAGATCTAAAACAAAAGAGACACAAGGATTTAACTACTTCACGACCAACGTATTAGTTGAATCTTTCTCATTTTCACCAAGTTTGACGAGAAGCGTGGGAATGTATGAATCAGTTAAACACGAGTGGAATTCGTAATTTGACCTCAATAGCTCATTTTCAAAATTTATAGGTCAAGATAACAAACAAACTAGAATATAGGTAGCATGATCATAGAGAAAAACTTGTGTGCAAAAGGTACTAGAAAATGCCACAAAACATAAGGAATGAGGCAAAATATGGGATCTAGGTTACGTATTTTCAATGAGCTTAGCTGAATATTGAATAATAACACTTTAGTTGATTCTTTGTAGGCTACGATCACAGCCAATAGGATTGTATGATCTGTTTCATTGTCTATAAATGTCACATGTGCATTATATTTTAAGTACATTAAATCAGAAAACATATTATTTTACATGCATTTATCCATTCCTTTCTACATTTATTTATGTTTTTCTATATTTAGTAATTCACAAAAATCGCTAAACACCGTACTTAACATTCTTTTGAGGAGTTAAAGAACTCACAACTTATTGTTAGATTTACTTCCATTTGGTGATCTCTTAAATAAAAGTATAATCATTGTTGAGAGCTATGAACGGAATCCTCGACAAACTTTCAAATTCGACAACACTAGACAAATGTTATTTTTTTCAAACTTTATATTAAGATTTGTAAGGTCTGTCAGTATTTGAATTCATACAAATTTCAGGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCACCACTTAGTAAGAAGCCGGTGAACATTGTCGATCCTATTGATCGAGTAAAAATAGAAGATGTTACGCCAGAAGAAAAAAAGGTGTCCTTCAAAATCAAGGATAGGTTATTGAAAGGTATATGATCCTTGCTGATAATTAGTAACCTTGTCTATTTTTTCTTAGCTCAATATAGTAGTAAACTTTTTAAGTAAATACACTGTTACATGTGGGTTCAATGTTTTTGTAGAGTTTGTTTGCAATATTTGTCACAACGTGTTAGCTTCCCCTCTTACAACACCTTGTGGTCACAACTTCTGCAAAGTCTGCCTTGAGGGTGTCTTTTCTGGCCAAAGTTATATTTCGAAGGGAGAACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTAACATCGTTGATTATCTTCAAAATCCACAGGTACTACTACTAGTATTTTTAAATAGACACATATGAAAGAAAAATATGATTTGAATTTGATATTAATGTTTTTAATATTAATGTTATTATTTGCTATTGGATTGCATTGATTATTTGTTATGTGATTAACAATATTCTTATTATGACTTATATTTTCACCAATCAAATAATGAAGGGATTATTATTCTATAAATCAATTCCATATTGAATTCCTTTTAATTGTATCCACAAATTACTACGAAATTACTAGTAGTCCTAATTTACCATGAAACTTTTAAAACCATTTGAAAATATGAAATTTAGAAAGGAATTTAGTGTTTAGTGTTTACCATGATGTCTTTAAATACTTAATATTGATGTGTCTATGCATTTGATTATTTTTGAAGTTTTGTTGCAACTATTATTTAGTCCAATAAACTAATAACTTTTTTAATTGCAATTTTCAATTTGATGTATTGGTGTTATCTGACTTATAATTTCTTATTTTTTTAATAGATTAATAAAGAAATAATGGATGTCATAGAATCACTCCAACGAGAGGCTGAACAAATGGAGAGTTTTGAAGAATTAATTGCTAAAAGTGATGAAAATCTCATGCTGGATGATAAGATAGAGGTTTCAAAACCTTGTGATTCAAGTGAAATATTTTTGGAGAAAATTAACGAGAATGATCTGAATGCTCCACAAAAGAGGAGGAAAGGTAATGAAGGCAAGGTTGTGGTGAACATGGAAGAAAATATTGATGAGGAGGAATTGGAAAGCAAAAAAATGGATTGCGAGTAG
Protein sequence

>MS.gene39153.t1

MEQEHSKQLPCDSNGVCMACKETYREFETLLCKTCNKPWHMPCLLLLPTTIYDWECPGCSQPNDINKVASPPLFSDEELAEMYEELVAGSSTENNIGSNVVLDIFDRSINCSYCMELLEKPVTTPCGHNFCLKCFVKWIKDGNGKRNCLNCKTVIPAKMTKNPKINFQLANAIRVAKLARSESVGASISTEVSHIVHDDQRPDTCYKTERTKKSGKANAVGGKIFVTIPIDHFGPIIAENDPTRSRGVLVGDTWGDRMECKQWGAHFPHIAGIAGQSSQGAQSVALSGGYIDDQDHGEWFLYTGSTNKRQSSDQQFKDRNEALRLSCRKGYPVRVIRSHKEKHSSYAPKAGVRYDGVYRIEKCWRKIGKQGYKVCRYLFVRCDNEPAPWTSDLLGDRPRPLPIIQEFKDAIDITERKDDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDRVKIEDVTPEEKKVSFKIKDRLLKEFVCNICHNVLASPLTTPCGHNFCKVCLEGVFSGQSYISKGEQKNIMKCPTCSTNIVDYLQNPQINKEIMDVIESLQREAEQMESFEELIAKSDENLMLDDKIEVSKPCDSSEIFLEKINENDLNAPQKRRKGNEGKVVVNMEENIDEEELESKKMDCE