AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034581

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034581.t1 MTR_8g102580 69.369 666 172 6 6 641 2 665 0.0 904
MS.gene034581.t1 MTR_5g098680 65.282 674 196 6 6 643 6 677 0.0 855
MS.gene034581.t1 MTR_3g114910 60.422 427 105 7 38 461 26 391 6.36e-176 506
MS.gene034581.t1 MTR_6g053210 33.333 354 84 7 46 380 5 225 2.28e-43 158
MS.gene034581.t1 MTR_6g053210 58.667 75 31 0 569 643 235 309 2.08e-17 84.0
MS.gene034581.t1 MTR_1g035420 37.179 156 85 3 247 395 217 366 6.89e-19 91.3
MS.gene034581.t1 MTR_6g061270 35.329 167 92 5 247 403 223 383 2.12e-18 89.7
MS.gene034581.t1 MTR_8g070070 38.608 158 83 4 247 395 325 477 7.31e-18 88.2
MS.gene034581.t1 MTR_6g061200 34.132 167 94 5 247 403 223 383 6.28e-17 85.1
MS.gene034581.t1 MTR_8g071030 36.076 158 87 3 247 395 305 457 1.33e-16 84.3
MS.gene034581.t1 MTR_7g088370 33.951 162 89 4 247 400 263 414 1.34e-16 84.3
MS.gene034581.t1 MTR_7g084090 33.929 168 94 5 247 403 285 446 4.92e-16 82.4
MS.gene034581.t1 MTR_7g084090 33.929 168 94 5 247 403 285 446 7.10e-16 82.0
MS.gene034581.t1 MTR_8g070075 35.443 158 88 4 247 395 318 470 2.35e-15 80.1
MS.gene034581.t1 MTR_4g010550 33.987 153 90 3 247 396 49 193 2.76e-14 76.3
MS.gene034581.t1 MTR_3g011440 32.571 175 99 5 237 400 188 354 3.83e-13 73.2
MS.gene034581.t1 MTR_1g035400 34.177 158 89 5 247 395 134 285 7.16e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034581.t1 AT1G57820 53.268 612 233 9 8 573 6 610 0.0 655
MS.gene034581.t1 AT1G57820 53.268 612 233 9 8 573 6 610 0.0 655
MS.gene034581.t1 AT1G57820 52.778 612 233 10 8 573 6 607 0.0 643
MS.gene034581.t1 AT5G39550 53.099 597 228 13 8 570 6 584 0.0 623
MS.gene034581.t1 AT1G66040 52.881 590 229 12 8 563 6 580 0.0 607
MS.gene034581.t1 AT1G66050 52.542 590 231 11 8 563 6 580 0.0 605
MS.gene034581.t1 AT1G57800 49.186 614 243 14 6 558 4 609 0.0 582
MS.gene034581.t1 AT1G57800 48.940 613 242 14 6 558 4 605 0.0 576
MS.gene034581.t1 AT4G08590 46.781 466 182 12 8 448 6 430 1.64e-134 402
MS.gene034581.t1 AT4G08590 46.895 467 181 13 8 448 6 431 1.67e-133 400
MS.gene034581.t1 AT4G08590 46.476 454 176 13 8 435 6 418 8.71e-127 381
MS.gene034581.t1 AT4G08590 44.976 418 163 13 8 399 6 382 1.21e-109 336
MS.gene034581.t1 AT4G08590 43.401 394 157 12 8 376 6 358 7.70e-97 302
MS.gene034581.t1 AT4G08590 43.401 394 157 12 8 376 6 358 7.70e-97 302
MS.gene034581.t1 AT2G35160 34.188 234 116 9 204 427 307 512 1.21e-18 90.9
MS.gene034581.t1 AT2G35160 34.188 234 116 9 204 427 343 548 1.34e-18 90.9
MS.gene034581.t1 AT2G35160 34.188 234 116 9 204 427 343 548 1.34e-18 90.9
MS.gene034581.t1 AT2G35160 34.188 234 116 9 204 427 343 548 1.34e-18 90.9
MS.gene034581.t1 AT2G35160 34.188 234 116 9 204 427 343 548 1.34e-18 90.9
MS.gene034581.t1 AT2G33290 38.217 157 82 5 247 396 211 359 1.38e-17 87.4
MS.gene034581.t1 AT2G33290 38.217 157 82 5 247 396 211 359 1.38e-17 87.4
MS.gene034581.t1 AT2G33290 38.217 157 82 5 247 396 211 359 1.38e-17 87.4
MS.gene034581.t1 AT2G33290 38.217 157 82 5 247 396 211 359 1.38e-17 87.4
MS.gene034581.t1 AT2G22740 36.774 155 92 4 247 396 334 487 3.33e-17 86.3
MS.gene034581.t1 AT2G22740 36.774 155 92 4 247 396 334 487 3.33e-17 86.3
MS.gene034581.t1 AT5G04940 36.364 165 86 5 247 401 215 370 1.13e-16 84.3
MS.gene034581.t1 AT5G04940 36.364 165 86 5 247 401 215 370 1.13e-16 84.3
MS.gene034581.t1 AT4G13460 36.585 164 89 5 247 403 209 364 1.82e-16 83.6
MS.gene034581.t1 AT4G13460 36.585 164 89 5 247 403 209 364 1.82e-16 83.6
MS.gene034581.t1 AT5G13960 34.524 168 93 4 247 403 153 314 2.43e-16 83.2
MS.gene034581.t1 AT5G13960 35.404 161 87 4 247 396 19 173 3.09e-16 82.4
MS.gene034581.t1 AT1G73100 34.591 159 85 5 247 396 212 360 4.93e-13 72.8

Find 160 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCAGTCAGTTGCTCTTTC+TGG 0.065244 1.3:-38661889 MS.gene034581:CDS
ACCTATAATTGAGGAGTTTA+AGG 0.146808 1.3:-38660964 MS.gene034581:CDS
ACGATTCCAATAGATCATTT+TGG 0.199264 1.3:-38662051 MS.gene034581:CDS
CGGTGAGTGGTTCCTTTATA+CGG 0.252259 1.3:-38661842 MS.gene034581:CDS
GAGAAATGTTGGCGCAAAAT+TGG 0.255568 1.3:-38661517 MS.gene034581:CDS
GCTATCCTGTTCGTGTTATA+AGG 0.262250 1.3:-38661711 MS.gene034581:intron
GACCAGCAATCCCGGCAATA+TGG 0.265406 1.3:+38661926 None:intergenic
TCATATCTCACTCCTGCTTT+TGG 0.274714 1.3:+38661556 None:intergenic
GGATTCTTGGTCATCTTTGC+TGG 0.275592 1.3:+38662264 None:intergenic
CCCCATATTGCCGGGATTGC+TGG 0.290706 1.3:-38661928 MS.gene034581:CDS
TTCCACCACTTCCCGTATAA+AGG 0.309213 1.3:+38661830 None:intergenic
ATAGGTTAATAAAGAAATAA+TGG 0.310053 1.3:-38658643 MS.gene034581:intron
GGCAACTTTGTTGATGTCAT+TGG 0.316463 1.3:+38662794 None:intergenic
GTAACAAAGGTACCAATAAA+AGG 0.321560 1.3:-38661795 MS.gene034581:CDS
TTGGTATGCAGTGATTTATT+AGG 0.326326 1.3:-38661005 MS.gene034581:intron
TTCTCGATACGTCTCTTTGC+AGG 0.326727 1.3:+38662923 None:intergenic
TCCTTAAACTCCTCAATTAT+AGG 0.329415 1.3:+38660963 None:intergenic
ATCGGTCCAAAATGATCTAT+TGG 0.338198 1.3:+38662045 None:intergenic
GGGTTCTTGTTGGTGATACA+TGG 0.342233 1.3:-38661990 MS.gene034581:CDS
GATAGGGTTATAAAGTTTGC+AGG 0.357866 1.3:-38661381 MS.gene034581:intron
GCAACTTTGTTGATGTCATT+GGG 0.371718 1.3:+38662795 None:intergenic
TTTGTTTAGCGATGAAGAAT+TGG 0.375796 1.3:-38662763 MS.gene034581:CDS
CTGATCAACAATTTAAAGAT+AGG 0.376098 1.3:-38661765 MS.gene034581:CDS
TTCAGGAGGAAAAGGGTTGC+TGG 0.389484 1.3:-38659564 MS.gene034581:intron
ATACAAATTTCAGGAGGAAA+AGG 0.391935 1.3:-38659572 MS.gene034581:intron
TTCCCACTACAATCTATGAT+TGG 0.394717 1.3:-38662839 MS.gene034581:CDS
CTCAATTATAGGTAGTGGTC+GGG 0.402866 1.3:+38660974 None:intergenic
TTCTGCAAAATCTGCCTTGA+GGG 0.403578 1.3:-38659249 MS.gene034581:CDS
TCCATTTCACAAAACACTTT+AGG 0.413839 1.3:+38662337 None:intergenic
CTCCCTTCGAAATATAACTT+TGG 0.415102 1.3:+38659214 None:intergenic
TTTATAGAATTGAGAAATGT+TGG 0.416474 1.3:-38661528 MS.gene034581:CDS
AAATGGATTAAGGATGGAAA+TGG 0.436348 1.3:-38662321 MS.gene034581:CDS
CCAACGAGAGGCTGAACAAA+TGG 0.436811 1.3:-38658604 MS.gene034581:CDS
AGGAAAAGGGTTGCTGGTTG+TGG 0.439545 1.3:-38659558 MS.gene034581:CDS
AAATATTGATGAGGAGGAAT+CGG 0.444316 1.3:-38658400 MS.gene034581:CDS
TGATACATGGGGAGATAGGA+TGG 0.447018 1.3:-38661977 MS.gene034581:CDS
CGCCAGAAAGAGCAACTGAC+TGG 0.449819 1.3:+38661887 None:intergenic
ACCAGCAATCCCGGCAATAT+GGG 0.450678 1.3:+38661927 None:intergenic
TAGGATGGAATGTAAGCAAT+GGG 0.454356 1.3:-38661962 MS.gene034581:CDS
ACTGAGATAACAAAGAAATC+AGG 0.455089 1.3:-38662108 MS.gene034581:CDS
GAATGATCCAACAAGGAGGC+GGG 0.459090 1.3:-38662013 MS.gene034581:CDS
ATGTATGAAGAACTTGTTGC+TGG 0.459347 1.3:-38662735 MS.gene034581:CDS
ACAAACCTTATAACACGAAC+AGG 0.459522 1.3:+38661706 None:intergenic
ATCAACCTTGTCCATGGAGC+TGG 0.459843 1.3:+38661331 None:intergenic
GGATCATTCTCAGCAATAAT+CGG 0.463917 1.3:+38662027 None:intergenic
CCATTTGTTCAGCCTCTCGT+TGG 0.465410 1.3:+38658604 None:intergenic
TCCCACTACAATCTATGATT+GGG 0.467641 1.3:-38662838 MS.gene034581:CDS
TACAAATTTCAGGAGGAAAA+GGG 0.470573 1.3:-38659571 MS.gene034581:intron
GGTTCTTGTTGGTGATACAT+GGG 0.474741 1.3:-38661989 MS.gene034581:CDS
TTGAGACTCAGTTGCCGAAA+AGG 0.477395 1.3:-38661733 MS.gene034581:CDS
ACTCTCAGATCTTGCTAGCT+TGG 0.479913 1.3:+38662203 None:intergenic
TCAGGAAAAGCTAATGTTGT+TGG 0.481646 1.3:-38662090 MS.gene034581:CDS
AGTCAGTTGCTCTTTCTGGC+GGG 0.488233 1.3:-38661885 MS.gene034581:CDS
AAAGGAAGGGTGATCCATCA+TGG 0.493405 1.3:-38660923 MS.gene034581:CDS
TCAGTCTTGTAACAAGTGTC+AGG 0.493874 1.3:+38662126 None:intergenic
TGGTTCCTTTATACGGGAAG+TGG 0.496746 1.3:-38661835 MS.gene034581:CDS
TGACCACAAGGTGTTGTAAG+AGG 0.498084 1.3:+38659276 None:intergenic
AGAGGAATGTTTCTCCTTGT+GGG 0.498560 1.3:+38661585 None:intergenic
AACTCCTCAATTATAGGTAG+TGG 0.498984 1.3:+38660969 None:intergenic
TTTGTGAAATGGATTAAGGA+TGG 0.502978 1.3:-38662327 MS.gene034581:CDS
CAATTGCTTGAATTGTAAAA+CGG 0.503895 1.3:-38662292 MS.gene034581:CDS
AAAGGTGTCCTTCAAAATCA+AGG 0.505676 1.3:-38659446 MS.gene034581:CDS
ATGATCCAACAAGGAGGCGG+GGG 0.513329 1.3:-38662011 MS.gene034581:CDS
TCCTCTTATGCACCAAAAGC+AGG 0.513587 1.3:-38661568 MS.gene034581:CDS
TAAAAGAAACTAACAGTGAC+AGG 0.516862 1.3:+38662618 None:intergenic
TGCTAGCTTGGCCACACGAA+TGG 0.520546 1.3:+38662215 None:intergenic
GCAGGCCATGCATACGCCAT+TGG 0.521132 1.3:+38662941 None:intergenic
ATCGGCTTCTTACTAAGTGG+TGG 0.526287 1.3:+38659526 None:intergenic
CATTAATTGTTCATACTGCA+TGG 0.526428 1.3:-38662655 MS.gene034581:CDS
AAGAGGAATGTTTCTCCTTG+TGG 0.526594 1.3:+38661584 None:intergenic
TGGCCAAAGTTATATTTCGA+AGG 0.527796 1.3:-38659217 MS.gene034581:CDS
CGATGTCAGTTGAACAAGTA+GGG 0.527869 1.3:+38659169 None:intergenic
GTTTAGCGATGAAGAATTGG+CGG 0.530457 1.3:-38662760 MS.gene034581:CDS
AGAATGATCCAACAAGGAGG+CGG 0.533072 1.3:-38662014 MS.gene034581:CDS
ATCGCTAAACAAAGGTGGAC+TGG 0.533268 1.3:+38662773 None:intergenic
ACTACTTTGACCAGCAATCC+CGG 0.534025 1.3:+38661918 None:intergenic
TCCTCTACTGAAAACAACAT+TGG 0.535789 1.3:-38662711 MS.gene034581:CDS
AAGAGGAGGAAAGGTAATGA+AGG 0.536156 1.3:-38658447 MS.gene034581:CDS
GGTGAGTGGTTCCTTTATAC+GGG 0.536258 1.3:-38661841 MS.gene034581:CDS
CAGTCAGTTGCTCTTTCTGG+CGG 0.537914 1.3:-38661886 MS.gene034581:CDS
CTAGCAAGATCTGAGAGTGT+TGG 0.540174 1.3:-38662198 MS.gene034581:CDS
GGCCAAAGTTATATTTCGAA+GGG 0.540414 1.3:-38659216 MS.gene034581:CDS
ATCTGAATGCTCCACAAAAG+AGG 0.543212 1.3:-38658464 MS.gene034581:CDS
CATGCTGGATGATAAGATAG+AGG 0.543827 1.3:-38658541 MS.gene034581:CDS
GGCTTCTTACTAAGTGGTGG+AGG 0.546603 1.3:+38659529 None:intergenic
GGAAGAAAATATTGATGAGG+AGG 0.546941 1.3:-38658406 MS.gene034581:CDS
GAGGAAAGGTAATGAAGGCA+AGG 0.549733 1.3:-38658442 MS.gene034581:CDS
AAGTGATGAAAATCTCATGC+TGG 0.552999 1.3:-38658556 MS.gene034581:CDS
TTCCTTTATACGGGAAGTGG+TGG 0.555246 1.3:-38661832 MS.gene034581:CDS
CCGACCACTACCTATAATTG+AGG 0.556426 1.3:-38660973 MS.gene034581:CDS
GACCACAAGGTGTTGTAAGA+GGG 0.558238 1.3:+38659277 None:intergenic
TGATTATCTTCAAAATCCAC+AGG 0.558282 1.3:-38659145 MS.gene034581:intron
GGAAAAGCTAATGTTGTTGG+TGG 0.558380 1.3:-38662087 MS.gene034581:CDS
TTGGTGATACATGGGGAGAT+AGG 0.560509 1.3:-38661981 MS.gene034581:CDS
AGGTAATGAAGGCAAGGTTG+TGG 0.563364 1.3:-38658436 MS.gene034581:CDS
AGTTGACATTACTGAAAGGA+AGG 0.564447 1.3:-38660937 MS.gene034581:CDS
CTTACATCAAAGTCCCATGA+TGG 0.566094 1.3:+38660909 None:intergenic
CCTCAATTATAGGTAGTGGT+CGG 0.569585 1.3:+38660973 None:intergenic
CAGCTTCCTTGTGACTCCAA+TGG 0.569846 1.3:-38662957 MS.gene034581:CDS
AATGATCCAACAAGGAGGCG+GGG 0.570704 1.3:-38662012 MS.gene034581:CDS
GCAAAACTTGCAATAAGCCA+TGG 0.571037 1.3:-38662884 MS.gene034581:CDS
GCCAGAAAGAGCAACTGACT+GGG 0.572445 1.3:+38661888 None:intergenic
CATTGGTTCAGACTCCCTGC+GGG 0.574057 1.3:-38662371 MS.gene034581:intron
TGTCCTTCAAAATCAAGGAT+AGG 0.577288 1.3:-38659441 MS.gene034581:CDS
TTCATCGGCTTCTTACTAAG+TGG 0.577940 1.3:+38659523 None:intergenic
ATCAAGGATAGGTTATTGAA+AGG 0.579801 1.3:-38659430 MS.gene034581:intron
CATAGATTGTAGTGGGAAGG+AGG 0.581188 1.3:+38662844 None:intergenic
TTGCAGAAGTTGTGACCACA+AGG 0.582853 1.3:+38659264 None:intergenic
AGGCAAGGTTGTGGTGAACA+TGG 0.583775 1.3:-38658427 MS.gene034581:CDS
TGACTCCAATGGCGTATGCA+TGG 0.584830 1.3:-38662946 MS.gene034581:CDS
AGTGGTGGAAAGGATACTGC+TGG 0.587233 1.3:-38661817 MS.gene034581:CDS
TCCCAATCATAGATTGTAGT+GGG 0.591503 1.3:+38662837 None:intergenic
GTTGGCGAACGCCATTCGTG+TGG 0.592073 1.3:-38662226 MS.gene034581:CDS
ACAATTTAAAGATAGGAATG+AGG 0.592075 1.3:-38661758 MS.gene034581:CDS
GTGACAATGAGCCAGCTCCA+TGG 0.592691 1.3:-38661342 MS.gene034581:CDS
GCTCCACAAAAGAGGAGGAA+AGG 0.592739 1.3:-38658456 MS.gene034581:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 1.3:-38661336 MS.gene034581:intron
TTTGCAGGTATTTGTTTGTG+AGG 0.596884 1.3:-38661366 MS.gene034581:CDS
ATCTATGATTGGGAATGCCC+TGG 0.598470 1.3:-38662828 MS.gene034581:CDS
CATGGAAGAAAATATTGATG+AGG 0.602211 1.3:-38658409 MS.gene034581:CDS
TCTTCATCGCTAAACAAAGG+TGG 0.604543 1.3:+38662768 None:intergenic
ATGACGAAGACCACGGTGAG+TGG 0.606110 1.3:-38661855 MS.gene034581:CDS
AGTAAACATGGCATATGCCA+TGG 0.607296 1.3:+38662867 None:intergenic
CCAGCAATCCCGGCAATATG+GGG 0.607358 1.3:+38661928 None:intergenic
AAGGATACTGCTGGTAACAA+AGG 0.607522 1.3:-38661808 MS.gene034581:CDS
TTATACGGGAAGTGGTGGAA+AGG 0.608263 1.3:-38661827 MS.gene034581:CDS
ATAGGATGGAATGTAAGCAA+TGG 0.609099 1.3:-38661963 MS.gene034581:CDS
AATCATAGATTGTAGTGGGA+AGG 0.610898 1.3:+38662841 None:intergenic
GTTCTTGTTGGTGATACATG+GGG 0.611481 1.3:-38661988 MS.gene034581:CDS
TTCCCAATCATAGATTGTAG+TGG 0.613702 1.3:+38662836 None:intergenic
AAAGCAGGAGTGAGATATGA+CGG 0.615626 1.3:-38661553 MS.gene034581:CDS
AAGGAAGGGTGATCCATCAT+GGG 0.617640 1.3:-38660922 MS.gene034581:CDS
TCAATTATAGGTAGTGGTCG+GGG 0.621301 1.3:+38660975 None:intergenic
ACGATGTCAGTTGAACAAGT+AGG 0.626927 1.3:+38659168 None:intergenic
TGGAGCAAGCATTTCTACAG+AGG 0.629773 1.3:-38662178 MS.gene034581:CDS
ACCACAAGGTGTTGTAAGAG+GGG 0.630182 1.3:+38659278 None:intergenic
TGATCCAACAAGGAGGCGGG+GGG 0.632009 1.3:-38662010 MS.gene034581:CDS
ATTGCTGGTCAAAGTAGTCA+AGG 0.636100 1.3:-38661913 MS.gene034581:CDS
ATAGGATCGACAATGTTCAT+CGG 0.638296 1.3:+38659508 None:intergenic
AATATTTCACTTGAATCACA+AGG 0.638799 1.3:+38658510 None:intergenic
GGCCAGAAAAGACACCCTCA+AGG 0.639715 1.3:+38659235 None:intergenic
TCCCCTCTTACAACACCTTG+TGG 0.640076 1.3:-38659279 MS.gene034581:CDS
TTATAGGTAGTGGTCGGGGA+CGG 0.640704 1.3:+38660979 None:intergenic
ATGCAGTTGACATTACTGAA+AGG 0.640737 1.3:-38660941 MS.gene034581:CDS
GAAAAGCTAATGTTGTTGGT+GGG 0.645095 1.3:-38662086 MS.gene034581:CDS
AATTCTTCATCGCTAAACAA+AGG 0.645742 1.3:+38662765 None:intergenic
TACATTGATGACGAAGACCA+CGG 0.647956 1.3:-38661862 MS.gene034581:CDS
TCATTGGTTCAGACTCCCTG+CGG 0.648413 1.3:-38662372 MS.gene034581:intron
CTTCTGCAAAATCTGCCTTG+AGG 0.653244 1.3:-38659250 MS.gene034581:CDS
CATAGAATCACTCCAACGAG+AGG 0.656194 1.3:-38658616 MS.gene034581:CDS
TGAATGCTCCACAAAAGAGG+AGG 0.660195 1.3:-38658461 MS.gene034581:CDS
CATACGCCATTGGAGTCACA+AGG 0.662456 1.3:+38662951 None:intergenic
TCATTGGGCTGAGAACAACC+AGG 0.663523 1.3:+38662810 None:intergenic
GTGGGAAGGAGGAGTAAACA+TGG 0.666201 1.3:+38662855 None:intergenic
GTTGACATTACTGAAAGGAA+GGG 0.667673 1.3:-38660936 MS.gene034581:CDS
TTGCTGAGAATGATCCAACA+AGG 0.691905 1.3:-38662020 MS.gene034581:CDS
CATTGGGCTGAGAACAACCA+GGG 0.719376 1.3:+38662811 None:intergenic
CTGAGAATGATCCAACAAGG+AGG 0.731919 1.3:-38662017 MS.gene034581:CDS
TATAAAGGAACCACTCACCG+TGG 0.734894 1.3:+38661845 None:intergenic
AGGATGGAATGTAAGCAATG+GGG 0.764192 1.3:-38661961 MS.gene034581:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAAAAAGATAAAAAG+GGG + chr1.3:38658763-38658782 None:intergenic 10.0%
!!! TAATTTAATCTAGTTTATTA+TGG - chr1.3:38658857-38658876 MS.gene034581:intron 10.0%
!!! TTTTTTTTTAAAGATTTGTA+AGG - chr1.3:38661738-38661757 MS.gene034581:CDS 10.0%
!! AAACATAAATAAATGTAGAA+AGG + chr1.3:38661513-38661532 None:intergenic 15.0%
!! ATAGGTTAATAAAGAAATAA+TGG - chr1.3:38662709-38662728 MS.gene034581:CDS 15.0%
!! TGAAAATATGAAATTTAGAA+AGG - chr1.3:38662507-38662526 MS.gene034581:intron 15.0%
!!! CTAAATTTCATATTTTCAAA+TGG + chr1.3:38662505-38662524 None:intergenic 15.0%
!!! TAAAAAAGTTATTAGTTTGT+TGG + chr1.3:38662631-38662650 None:intergenic 15.0%
!!! TTTTGTAATAATAAAACAAG+TGG - chr1.3:38660081-38660100 MS.gene034581:intron 15.0%
!! AATTTGTGGATACAATTAAA+AGG + chr1.3:38662436-38662455 None:intergenic 20.0%
!! ACTTTATCATTATGATTATC+AGG + chr1.3:38660587-38660606 None:intergenic 20.0%
!! TAAAAGTTTCATGGTAAATT+AGG + chr1.3:38662479-38662498 None:intergenic 20.0%
!! TAAATAAATGTAGAAAGGAA+TGG + chr1.3:38661508-38661527 None:intergenic 20.0%
!! TATCATATAAATTCACGAAT+AGG + chr1.3:38659714-38659733 None:intergenic 20.0%
!! TCATGTTTAATATGATAACT+TGG - chr1.3:38660314-38660333 MS.gene034581:intron 20.0%
!! TTAAGTATTTAAAGACATCA+TGG + chr1.3:38662553-38662572 None:intergenic 20.0%
!! TTTATAGAATTGAGAAATGT+TGG - chr1.3:38659824-38659843 MS.gene034581:intron 20.0%
!! TTTGAATTCATACAAATTTC+AGG - chr1.3:38661771-38661790 MS.gene034581:CDS 20.0%
!!! AAAATTGATTTTTGGATTCT+TGG + chr1.3:38659104-38659123 None:intergenic 20.0%
!!! AAATGGTTTTAAAAGTTTCA+TGG + chr1.3:38662488-38662507 None:intergenic 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG - chr1.3:38660162-38660181 MS.gene034581:intron 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG - chr1.3:38660148-38660167 MS.gene034581:intron 20.0%
!!! AGCTCATTTTCAAAATTTAT+AGG - chr1.3:38661187-38661206 MS.gene034581:intron 20.0%
!!! ATATTTTCACCAATCAAATA+GGG - chr1.3:38662378-38662397 MS.gene034581:intron 20.0%
!!! CAATTTTCAATTTGATGTAT+TGG - chr1.3:38662655-38662674 MS.gene034581:CDS 20.0%
!!! TATATTTTCACCAATCAAAT+AGG - chr1.3:38662377-38662396 MS.gene034581:intron 20.0%
!!! TGATTCAAGTGAAATATTTT+TGG - chr1.3:38662847-38662866 MS.gene034581:CDS 20.0%
!!! TGTATTGATTTATTTTGTTC+AGG - chr1.3:38659743-38659762 MS.gene034581:intron 20.0%
!!! TTAGTGTTATTATTTGCTAT+TGG - chr1.3:38662306-38662325 MS.gene034581:CDS 20.0%
! AAACAAGTGGAAATGTTTAA+TGG - chr1.3:38660094-38660113 MS.gene034581:intron 25.0%
! AACAACCTACAACATATTAA+TGG - chr1.3:38660616-38660635 MS.gene034581:intron 25.0%
! AACCAACAAGACTATAATAT+AGG - chr1.3:38660802-38660821 MS.gene034581:intron 25.0%
! AATATTTCACTTGAATCACA+AGG + chr1.3:38662845-38662864 None:intergenic 25.0%
! AATTGAAATGTGCAAACATT+TGG - chr1.3:38658906-38658925 MS.gene034581:intron 25.0%
! ACAATTTAAAGATAGGAATG+AGG - chr1.3:38659594-38659613 MS.gene034581:intron 25.0%
! ACCAACAAGACTATAATATA+GGG - chr1.3:38660803-38660822 MS.gene034581:intron 25.0%
! AGTAATTTCGTAGTAATTTG+TGG + chr1.3:38662450-38662469 None:intergenic 25.0%
! CAATTGCTTGAATTGTAAAA+CGG - chr1.3:38659060-38659079 MS.gene034581:intron 25.0%
! CTGATCAACAATTTAAAGAT+AGG - chr1.3:38659587-38659606 MS.gene034581:intron 25.0%
! TAACAAACACACTAGAATAT+AGG - chr1.3:38661216-38661235 MS.gene034581:intron 25.0%
! TCCATGGAAAAAAAAATATG+AGG + chr1.3:38660054-38660073 None:intergenic 25.0%
! TTATTTAAGAGATCACCAAA+TGG + chr1.3:38661630-38661649 None:intergenic 25.0%
! TTGATAGATTTACTTCCATT+TGG - chr1.3:38661612-38661631 MS.gene034581:intron 25.0%
! TTTCACCATTAATATGTTGT+AGG + chr1.3:38660624-38660643 None:intergenic 25.0%
!! ATAACTTGGATCAATTTTGT+TGG - chr1.3:38660328-38660347 MS.gene034581:intron 25.0%
!! TCCAAAAATCAATTTTCAGT+TGG - chr1.3:38659108-38659127 MS.gene034581:intron 25.0%
!!! AATATGTTGTAGGTTGTTTT+TGG + chr1.3:38660614-38660633 None:intergenic 25.0%
!!! ATTTTGAAAATGAGCTATTG+AGG + chr1.3:38661183-38661202 None:intergenic 25.0%
!!! GTATTTAGTTTTTCTCAAAC+AGG + chr1.3:38661003-38661022 None:intergenic 25.0%
!!! TCCTCATATTTTTTTTTCCA+TGG - chr1.3:38660050-38660069 MS.gene034581:intron 25.0%
!!! TCTATTTTTACTCGATCAAT+AGG + chr1.3:38661865-38661884 None:intergenic 25.0%
AAAAAAATCAACCTTGTCCA+TGG + chr1.3:38660030-38660049 None:intergenic 30.0%
AAACTAGAAATTGACAAACG+TGG - chr1.3:38660656-38660675 MS.gene034581:intron 30.0%
AAATATTGATGAGGAGGAAT+CGG - chr1.3:38662952-38662971 MS.gene034581:CDS 30.0%
AACAGATCATACAATCCTAT+TGG + chr1.3:38661406-38661425 None:intergenic 30.0%
AACTAGAAATTGACAAACGT+GGG - chr1.3:38660657-38660676 MS.gene034581:intron 30.0%
AAGGTTACTAATTATCAGCA+AGG + chr1.3:38661956-38661975 None:intergenic 30.0%
AATTCTTCATCGCTAAACAA+AGG + chr1.3:38658590-38658609 None:intergenic 30.0%
ACCTATAATTGAGGAGTTTA+AGG - chr1.3:38660388-38660407 MS.gene034581:intron 30.0%
ACTGAGATAACAAAGAAATC+AGG - chr1.3:38659244-38659263 MS.gene034581:CDS 30.0%
AGAAAATGCCACAAAACATA+AGG - chr1.3:38661279-38661298 MS.gene034581:intron 30.0%
ATAAATTGAGTAAGACCTAG+TGG - chr1.3:38659903-38659922 MS.gene034581:intron 30.0%
ATAAGGAATGAGGCAAAATA+TGG - chr1.3:38661296-38661315 MS.gene034581:intron 30.0%
ATACAAATTTCAGGAGGAAA+AGG - chr1.3:38661780-38661799 MS.gene034581:CDS 30.0%
ATCAAGGATAGGTTATTGAA+AGG - chr1.3:38661922-38661941 MS.gene034581:CDS 30.0%
CAAAAGAGAATATCAAGACA+AGG - chr1.3:38661043-38661062 MS.gene034581:intron 30.0%
CAACAAGACTATAATATAGG+GGG - chr1.3:38660805-38660824 MS.gene034581:intron 30.0%
CATAATTAGTCCAAGACATA+TGG - chr1.3:38660727-38660746 MS.gene034581:intron 30.0%
CATGGAAGAAAATATTGATG+AGG - chr1.3:38662943-38662962 MS.gene034581:CDS 30.0%
CATTAATTGTTCATACTGCA+TGG - chr1.3:38658697-38658716 MS.gene034581:intron 30.0%
CCAACAAGACTATAATATAG+GGG - chr1.3:38660804-38660823 MS.gene034581:intron 30.0%
CCTCAAAAGAATGTTAAGTA+CGG + chr1.3:38661571-38661590 None:intergenic 30.0%
GAAAGATTCAACTAATACGT+TGG + chr1.3:38661086-38661105 None:intergenic 30.0%
GAATTCATACAAATTTCAGG+AGG - chr1.3:38661774-38661793 MS.gene034581:CDS 30.0%
GAGCTAAGAAAAAATAGACA+AGG + chr1.3:38661975-38661994 None:intergenic 30.0%
GATCCTTGTGGTTAAATTAT+CGG + chr1.3:38660755-38660774 None:intergenic 30.0%
GTGGATACAATTAAAAGGAA+TGG + chr1.3:38662431-38662450 None:intergenic 30.0%
TAAAAGAAACTAACAGTGAC+AGG + chr1.3:38658737-38658756 None:intergenic 30.0%
TAAGGAATGAGGCAAAATAT+GGG - chr1.3:38661297-38661316 MS.gene034581:intron 30.0%
TACAAATTTCAGGAGGAAAA+GGG - chr1.3:38661781-38661800 MS.gene034581:CDS 30.0%
TCAATGTTTGATAAACCACT+AGG + chr1.3:38659921-38659940 None:intergenic 30.0%
TCCATTTCACAAAACACTTT+AGG + chr1.3:38659018-38659037 None:intergenic 30.0%
TCCTTAAACTCCTCAATTAT+AGG + chr1.3:38660392-38660411 None:intergenic 30.0%
TGATTATCTTCAAAATCCAC+AGG - chr1.3:38662207-38662226 MS.gene034581:CDS 30.0%
TGCTGTAATGTTGTTATCAT+TGG - chr1.3:38658964-38658983 MS.gene034581:intron 30.0%
TTGGTATGCAGTGATTTATT+AGG - chr1.3:38660347-38660366 MS.gene034581:intron 30.0%
TTTGTTTAGCGATGAAGAAT+TGG - chr1.3:38658589-38658608 MS.gene034581:CDS 30.0%
! ACGATTCCAATAGATCATTT+TGG - chr1.3:38659301-38659320 MS.gene034581:CDS 30.0%
! ATCAGATGATTGCCTTTTAT+TGG + chr1.3:38659572-38659591 None:intergenic 30.0%
! CACTTTAGTTGATTCTTTGT+AGG - chr1.3:38661368-38661387 MS.gene034581:CDS 30.0%
! TAACCTATCCTTGATTTTGA+AGG + chr1.3:38661917-38661936 None:intergenic 30.0%
! TTTAACCACAAGGATCATTT+TGG - chr1.3:38660759-38660778 MS.gene034581:intron 30.0%
!! AAATGGATTAAGGATGGAAA+TGG - chr1.3:38659031-38659050 MS.gene034581:intron 30.0%
!! GCCAACTGAAAATTGATTTT+TGG + chr1.3:38659112-38659131 None:intergenic 30.0%
!! GTAACAAAGGTACCAATAAA+AGG - chr1.3:38659557-38659576 MS.gene034581:CDS 30.0%
!! TTTGTGAAATGGATTAAGGA+TGG - chr1.3:38659025-38659044 MS.gene034581:intron 30.0%
!!! GTGTTTTGTGAAATGGATTA+AGG - chr1.3:38659021-38659040 MS.gene034581:intron 30.0%
AAACTCCAAAATGATCCTTG+TGG + chr1.3:38660767-38660786 None:intergenic 35.0%
AACTCCTCAATTATAGGTAG+TGG + chr1.3:38660386-38660405 None:intergenic 35.0%
AAGATTAAAAGCAACGTCAC+CGG + chr1.3:38658819-38658838 None:intergenic 35.0%
AAGTGATGAAAATCTCATGC+TGG - chr1.3:38662796-38662815 MS.gene034581:CDS 35.0%
AATACTAGTAGTAGTACCTG+TGG + chr1.3:38662226-38662245 None:intergenic 35.0%
ACAAACCTTATAACACGAAC+AGG + chr1.3:38659649-38659668 None:intergenic 35.0%
ACAGTGTATCTATGTGTGAT+AGG - chr1.3:38659954-38659973 MS.gene034581:intron 35.0%
ACTATTTGCCACAATTCAAG+GGG + chr1.3:38660225-38660244 None:intergenic 35.0%
AGTTGACATTACTGAAAGGA+AGG - chr1.3:38660415-38660434 MS.gene034581:intron 35.0%
ATAGGATCGACAATGTTCAT+CGG + chr1.3:38661847-38661866 None:intergenic 35.0%
ATAGGATGGAATGTAAGCAA+TGG - chr1.3:38659389-38659408 MS.gene034581:intron 35.0%
ATCGGTCCAAAATGATCTAT+TGG + chr1.3:38659310-38659329 None:intergenic 35.0%
ATGAATCAGTTAAACACGAG+TGG - chr1.3:38661143-38661162 MS.gene034581:intron 35.0%
ATGCAGTTGACATTACTGAA+AGG - chr1.3:38660411-38660430 MS.gene034581:intron 35.0%
ATTACAAAAACACACGTCCA+TGG + chr1.3:38660070-38660089 None:intergenic 35.0%
CACTATTTGCCACAATTCAA+GGG + chr1.3:38660226-38660245 None:intergenic 35.0%
CAGTGTATCTATGTGTGATA+GGG - chr1.3:38659955-38659974 MS.gene034581:intron 35.0%
CTCCCTTCGAAATATAACTT+TGG + chr1.3:38662141-38662160 None:intergenic 35.0%
GAAAAGCTAATGTTGTTGGT+GGG - chr1.3:38659266-38659285 MS.gene034581:CDS 35.0%
GAACCGATAATTTAACCACA+AGG - chr1.3:38660749-38660768 MS.gene034581:intron 35.0%
GAGAAAAACTTGTGTGCAAA+AGG - chr1.3:38661252-38661271 MS.gene034581:intron 35.0%
GATAGGGTTATAAAGTTTGC+AGG - chr1.3:38659971-38659990 MS.gene034581:intron 35.0%
GCAACTTTGTTGATGTCATT+GGG + chr1.3:38658560-38658579 None:intergenic 35.0%
GGAAGAAAATATTGATGAGG+AGG - chr1.3:38662946-38662965 MS.gene034581:CDS 35.0%
GGAATCGGAAAGCAAAAAAA+TGG - chr1.3:38662967-38662986 MS.gene034581:CDS 35.0%
GGATCATTCTCAGCAATAAT+CGG + chr1.3:38659328-38659347 None:intergenic 35.0%
GGCCAAAGTTATATTTCGAA+GGG - chr1.3:38662136-38662155 MS.gene034581:CDS 35.0%
GTTGACATTACTGAAAGGAA+GGG - chr1.3:38660416-38660435 MS.gene034581:intron 35.0%
TAGGATGGAATGTAAGCAAT+GGG - chr1.3:38659390-38659409 MS.gene034581:intron 35.0%
TCAGGAAAAGCTAATGTTGT+TGG - chr1.3:38659262-38659281 MS.gene034581:CDS 35.0%
TCATTGTTGAGTGCTATGAA+CGG - chr1.3:38661658-38661677 MS.gene034581:intron 35.0%
TCCCAATCATAGATTGTAGT+GGG + chr1.3:38658518-38658537 None:intergenic 35.0%
TCCCACTACAATCTATGATT+GGG - chr1.3:38658514-38658533 MS.gene034581:CDS 35.0%
TCCTCTACTGAAAACAACAT+TGG - chr1.3:38658641-38658660 MS.gene034581:CDS 35.0%
TCGAATTTGAAAGTTTGTCG+AGG + chr1.3:38661687-38661706 None:intergenic 35.0%
TGGCCAAAGTTATATTTCGA+AGG - chr1.3:38662135-38662154 MS.gene034581:CDS 35.0%
TGTCCTTCAAAATCAAGGAT+AGG - chr1.3:38661911-38661930 MS.gene034581:CDS 35.0%
TGTTACGCCAGAAGAAAAAA+AGG - chr1.3:38661888-38661907 MS.gene034581:CDS 35.0%
TTCACCAATCAAATAGGGAA+GGG - chr1.3:38662383-38662402 MS.gene034581:intron 35.0%
TTCCCAATCATAGATTGTAG+TGG + chr1.3:38658519-38658538 None:intergenic 35.0%
TTCCCACTACAATCTATGAT+TGG - chr1.3:38658513-38658532 MS.gene034581:CDS 35.0%
TTTCACCAATCAAATAGGGA+AGG - chr1.3:38662382-38662401 MS.gene034581:intron 35.0%
TTTGCAGGTATTTGTTTGTG+AGG - chr1.3:38659986-38660005 MS.gene034581:intron 35.0%
! AATCATAGATTGTAGTGGGA+AGG + chr1.3:38658514-38658533 None:intergenic 35.0%
! CCGTACTTAACATTCTTTTG+AGG - chr1.3:38661568-38661587 MS.gene034581:CDS 35.0%
! GCTTATTGCAAGTTTTGCAA+AGG + chr1.3:38658466-38658485 None:intergenic 35.0%
!! AAAGGTGTCCTTCAAAATCA+AGG - chr1.3:38661906-38661925 MS.gene034581:CDS 35.0%
!! ATGTATGAAGAACTTGTTGC+TGG - chr1.3:38658617-38658636 MS.gene034581:CDS 35.0%
!! ATTATCGGTTCCATATGTCT+TGG + chr1.3:38660740-38660759 None:intergenic 35.0%
!! CCCCTATATTATAGTCTTGT+TGG + chr1.3:38660807-38660826 None:intergenic 35.0%
!! CTTACTTTTCTGACGATTTC+CGG - chr1.3:38658797-38658816 MS.gene034581:intron 35.0%
!! GCCTAAAGTGTTTTGTGAAA+TGG - chr1.3:38659014-38659033 MS.gene034581:intron 35.0%
!!! AAGGACACCTTTTTTTCTTC+TGG + chr1.3:38661898-38661917 None:intergenic 35.0%
!!! TCCAATGTTGTTTTCAGTAG+AGG + chr1.3:38658645-38658664 None:intergenic 35.0%
AAAGCAGGAGTGAGATATGA+CGG - chr1.3:38659799-38659818 MS.gene034581:intron 40.0%
AAGAGGAATGTTTCTCCTTG+TGG + chr1.3:38659771-38659790 None:intergenic 40.0%
AAGAGGAGGAAAGGTAATGA+AGG - chr1.3:38662905-38662924 MS.gene034581:CDS 40.0%
AAGGATACTGCTGGTAACAA+AGG - chr1.3:38659544-38659563 MS.gene034581:CDS 40.0%
ACGATGTCAGTTGAACAAGT+AGG + chr1.3:38662187-38662206 None:intergenic 40.0%
AGAGGAATGTTTCTCCTTGT+GGG + chr1.3:38659770-38659789 None:intergenic 40.0%
AGGATGGAATGTAAGCAATG+GGG - chr1.3:38659391-38659410 MS.gene034581:intron 40.0%
AGTAAACATGGCATATGCCA+TGG + chr1.3:38658488-38658507 None:intergenic 40.0%
ATCTGAATGCTCCACAAAAG+AGG - chr1.3:38662888-38662907 MS.gene034581:CDS 40.0%
ATTGCTGGTCAAAGTAGTCA+AGG - chr1.3:38659439-38659458 MS.gene034581:CDS 40.0%
CATGCTGGATGATAAGATAG+AGG - chr1.3:38662811-38662830 MS.gene034581:CDS 40.0%
CGATGTCAGTTGAACAAGTA+GGG + chr1.3:38662186-38662205 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+GGG + chr1.3:38660224-38660243 None:intergenic 40.0%
CTTACATCAAAGTCCCATGA+TGG + chr1.3:38660446-38660465 None:intergenic 40.0%
GAGAAATGTTGGCGCAAAAT+TGG - chr1.3:38659835-38659854 MS.gene034581:intron 40.0%
GCAAAACTTGCAATAAGCCA+TGG - chr1.3:38658468-38658487 MS.gene034581:CDS 40.0%
GCACTATTTGCCACAATTCA+AGG + chr1.3:38660227-38660246 None:intergenic 40.0%
GCCACAAAACATAAGGAATG+AGG - chr1.3:38661286-38661305 MS.gene034581:intron 40.0%
GCTATCCTGTTCGTGTTATA+AGG - chr1.3:38659641-38659660 MS.gene034581:intron 40.0%
GGAAAAGCTAATGTTGTTGG+TGG - chr1.3:38659265-38659284 MS.gene034581:CDS 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr1.3:38660235-38660254 MS.gene034581:intron 40.0%
GGCAACTTTGTTGATGTCAT+TGG + chr1.3:38658561-38658580 None:intergenic 40.0%
GTTTAGCGATGAAGAATTGG+CGG - chr1.3:38658592-38658611 MS.gene034581:CDS 40.0%
TAACCCCTTCCCTATTTGAT+TGG + chr1.3:38662390-38662409 None:intergenic 40.0%
TCACCAATCAAATAGGGAAG+GGG - chr1.3:38662384-38662403 MS.gene034581:intron 40.0%
TCTTCATCGCTAAACAAAGG+TGG + chr1.3:38658587-38658606 None:intergenic 40.0%
TGAGGCAAAATATGGGATCT+AGG - chr1.3:38661304-38661323 MS.gene034581:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr1.3:38660201-38660220 None:intergenic 40.0%
TTCTGCAAAATCTGCCTTGA+GGG - chr1.3:38662103-38662122 MS.gene034581:CDS 40.0%
TTGCTGAGAATGATCCAACA+AGG - chr1.3:38659332-38659351 MS.gene034581:intron 40.0%
! CCTCAATTATAGGTAGTGGT+CGG + chr1.3:38660382-38660401 None:intergenic 40.0%
! CTCAATTATAGGTAGTGGTC+GGG + chr1.3:38660381-38660400 None:intergenic 40.0%
! GCCTCATTCCTTATGTTTTG+TGG + chr1.3:38661290-38661309 None:intergenic 40.0%
! TATTTTGTTCAGGTCCCACA+AGG - chr1.3:38659753-38659772 MS.gene034581:intron 40.0%
! TCAATTATAGGTAGTGGTCG+GGG + chr1.3:38660380-38660399 None:intergenic 40.0%
! TCAGTCTTGTAACAAGTGTC+AGG + chr1.3:38659229-38659248 None:intergenic 40.0%
! TCATATCTCACTCCTGCTTT+TGG + chr1.3:38659799-38659818 None:intergenic 40.0%
! TTACCTTTCCTCCTCTTTTG+TGG + chr1.3:38662902-38662921 None:intergenic 40.0%
!! GGTTCTTGTTGGTGATACAT+GGG - chr1.3:38659363-38659382 MS.gene034581:intron 40.0%
!! GTTCTTGTTGGTGATACATG+GGG - chr1.3:38659364-38659383 MS.gene034581:intron 40.0%
!! TACATTGATGACGAAGACCA+CGG - chr1.3:38659490-38659509 MS.gene034581:CDS 40.0%
!! TTCATCGGCTTCTTACTAAG+TGG + chr1.3:38661832-38661851 None:intergenic 40.0%
AAAGGAAGGGTGATCCATCA+TGG - chr1.3:38660429-38660448 MS.gene034581:intron 45.0%
AAGGAAGGGTGATCCATCAT+GGG - chr1.3:38660430-38660449 MS.gene034581:intron 45.0%
ACCAAGTTTGACAAGAAGCG+TGG - chr1.3:38661114-38661133 MS.gene034581:intron 45.0%
ACTACTTTGACCAGCAATCC+CGG + chr1.3:38659437-38659456 None:intergenic 45.0%
ACTCTCAGATCTTGCTAGCT+TGG + chr1.3:38659152-38659171 None:intergenic 45.0%
AGAATGATCCAACAAGGAGG+CGG - chr1.3:38659338-38659357 MS.gene034581:intron 45.0%
AGGTAATGAAGGCAAGGTTG+TGG - chr1.3:38662916-38662935 MS.gene034581:CDS 45.0%
ATCGCTAAACAAAGGTGGAC+TGG + chr1.3:38658582-38658601 None:intergenic 45.0%
ATCTATGATTGGGAATGCCC+TGG - chr1.3:38658524-38658543 MS.gene034581:CDS 45.0%
CATAGAATCACTCCAACGAG+AGG - chr1.3:38662736-38662755 MS.gene034581:CDS 45.0%
CCGACCACTACCTATAATTG+AGG - chr1.3:38660379-38660398 MS.gene034581:intron 45.0%
CGGTGAGTGGTTCCTTTATA+CGG - chr1.3:38659510-38659529 MS.gene034581:CDS 45.0%
CTGAGAATGATCCAACAAGG+AGG - chr1.3:38659335-38659354 MS.gene034581:intron 45.0%
CTTCTGCAAAATCTGCCTTG+AGG - chr1.3:38662102-38662121 MS.gene034581:CDS 45.0%
GAGGAAAGGTAATGAAGGCA+AGG - chr1.3:38662910-38662929 MS.gene034581:CDS 45.0%
GGATTCTTGGTCATCTTTGC+TGG + chr1.3:38659091-38659110 None:intergenic 45.0%
GGTGAGTGGTTCCTTTATAC+GGG - chr1.3:38659511-38659530 MS.gene034581:CDS 45.0%
GTTCAGTTTCACAAGAGTCG+TGG - chr1.3:38660698-38660717 MS.gene034581:intron 45.0%
TATAAAGGAACCACTCACCG+TGG + chr1.3:38659510-38659529 None:intergenic 45.0%
TCCTCTTATGCACCAAAAGC+AGG - chr1.3:38659784-38659803 MS.gene034581:intron 45.0%
TGAATGCTCCACAAAAGAGG+AGG - chr1.3:38662891-38662910 MS.gene034581:CDS 45.0%
TGATACATGGGGAGATAGGA+TGG - chr1.3:38659375-38659394 MS.gene034581:intron 45.0%
TGGAGCAAGCATTTCTACAG+AGG - chr1.3:38659174-38659193 MS.gene034581:CDS 45.0%
TGGTTCCTTTATACGGGAAG+TGG - chr1.3:38659517-38659536 MS.gene034581:CDS 45.0%
TTCCACCACTTCCCGTATAA+AGG + chr1.3:38659525-38659544 None:intergenic 45.0%
TTCCTTTATACGGGAAGTGG+TGG - chr1.3:38659520-38659539 MS.gene034581:CDS 45.0%
TTCTCGATACGTCTCTTTGC+AGG + chr1.3:38658432-38658451 None:intergenic 45.0%
TTGAGACTCAGTTGCCGAAA+AGG - chr1.3:38659619-38659638 MS.gene034581:intron 45.0%
TTGCAGAAGTTGTGACCACA+AGG + chr1.3:38662091-38662110 None:intergenic 45.0%
! ATCGGCTTCTTACTAAGTGG+TGG + chr1.3:38661829-38661848 None:intergenic 45.0%
! CACGAACAGGATAGCCTTTT+CGG + chr1.3:38659636-38659655 None:intergenic 45.0%
! CATAGATTGTAGTGGGAAGG+AGG + chr1.3:38658511-38658530 None:intergenic 45.0%
! CCAAGTTTGACAAGAAGCGT+GGG - chr1.3:38661115-38661134 MS.gene034581:intron 45.0%
! CTAGCAAGATCTGAGAGTGT+TGG - chr1.3:38659154-38659173 MS.gene034581:CDS 45.0%
! CTCATTTTCCCCATATTGCC+GGG - chr1.3:38659416-38659435 MS.gene034581:intron 45.0%
! GCTCATTTTCCCCATATTGC+CGG - chr1.3:38659415-38659434 MS.gene034581:intron 45.0%
! TTATACGGGAAGTGGTGGAA+AGG - chr1.3:38659525-38659544 MS.gene034581:CDS 45.0%
! TTGGTGATACATGGGGAGAT+AGG - chr1.3:38659371-38659390 MS.gene034581:intron 45.0%
!! ACCACAAGGTGTTGTAAGAG+GGG + chr1.3:38662077-38662096 None:intergenic 45.0%
!! GACCACAAGGTGTTGTAAGA+GGG + chr1.3:38662078-38662097 None:intergenic 45.0%
!! GGGTTCTTGTTGGTGATACA+TGG - chr1.3:38659362-38659381 MS.gene034581:intron 45.0%
!! TCCTGCTTTTGGTGCATAAG+AGG + chr1.3:38659788-38659807 None:intergenic 45.0%
!! TGACCACAAGGTGTTGTAAG+AGG + chr1.3:38662079-38662098 None:intergenic 45.0%
!!! AATTTTTAAAAAGATAAAAA+GGG + chr1.3:38658764-38658783 None:intergenic 5.0%
!!! ATAATTTCTTATTTTTTAAT+AGG - chr1.3:38662691-38662710 MS.gene034581:CDS 5.0%
!!! TAATTTTTAAAAAGATAAAA+AGG + chr1.3:38658765-38658784 None:intergenic 5.0%
AATGATCCAACAAGGAGGCG+GGG - chr1.3:38659340-38659359 MS.gene034581:intron 50.0%
ACCAGCAATCCCGGCAATAT+GGG + chr1.3:38659428-38659447 None:intergenic 50.0%
AGGCAAAAATTGTGCCCGCA+GGG + chr1.3:38658998-38659017 None:intergenic 50.0%
AGGCAAGGTTGTGGTGAACA+TGG - chr1.3:38662925-38662944 MS.gene034581:CDS 50.0%
AGGCTACGATCACAGCCAAT+AGG - chr1.3:38661388-38661407 MS.gene034581:intron 50.0%
ATCAACCTTGTCCATGGAGC+TGG + chr1.3:38660024-38660043 None:intergenic 50.0%
CAGCTTCCTTGTGACTCCAA+TGG - chr1.3:38658395-38658414 MS.gene034581:CDS 50.0%
CAGTCAGTTGCTCTTTCTGG+CGG - chr1.3:38659466-38659485 MS.gene034581:CDS 50.0%
CATACGCCATTGGAGTCACA+AGG + chr1.3:38658404-38658423 None:intergenic 50.0%
CATTGGGCTGAGAACAACCA+GGG + chr1.3:38658544-38658563 None:intergenic 50.0%
CCAACGAGAGGCTGAACAAA+TGG - chr1.3:38662748-38662767 MS.gene034581:CDS 50.0%
CCATTTGTTCAGCCTCTCGT+TGG + chr1.3:38662751-38662770 None:intergenic 50.0%
CCCACGCTTCTTGTCAAACT+TGG + chr1.3:38661118-38661137 None:intergenic 50.0%
GAATGATCCAACAAGGAGGC+GGG - chr1.3:38659339-38659358 MS.gene034581:intron 50.0%
GCCAGAAAGAGCAACTGACT+GGG + chr1.3:38659467-38659486 None:intergenic 50.0%
GCTCCACAAAAGAGGAGGAA+AGG - chr1.3:38662896-38662915 MS.gene034581:CDS 50.0%
GGCTTCTTACTAAGTGGTGG+AGG + chr1.3:38661826-38661845 None:intergenic 50.0%
GTGGGAAGGAGGAGTAAACA+TGG + chr1.3:38658500-38658519 None:intergenic 50.0%
TAGGCAAAAATTGTGCCCGC+AGG + chr1.3:38658999-38659018 None:intergenic 50.0%
TCATTGGGCTGAGAACAACC+AGG + chr1.3:38658545-38658564 None:intergenic 50.0%
TCCCCTCTTACAACACCTTG+TGG - chr1.3:38662073-38662092 MS.gene034581:CDS 50.0%
TGACTCCAATGGCGTATGCA+TGG - chr1.3:38658406-38658425 MS.gene034581:CDS 50.0%
TTCAGGAGGAAAAGGGTTGC+TGG - chr1.3:38661788-38661807 MS.gene034581:CDS 50.0%
! AGGAAAAGGGTTGCTGGTTG+TGG - chr1.3:38661794-38661813 MS.gene034581:CDS 50.0%
! AGGGGGTGTGGCTGAAAAAT+AGG + chr1.3:38660207-38660226 None:intergenic 50.0%
! AGTCAGTTGCTCTTTCTGGC+GGG - chr1.3:38659467-38659486 MS.gene034581:CDS 50.0%
! AGTGGTGGAAAGGATACTGC+TGG - chr1.3:38659535-38659554 MS.gene034581:CDS 50.0%
! TTATAGGTAGTGGTCGGGGA+CGG + chr1.3:38660376-38660395 None:intergenic 50.0%
!! TCATTGGTTCAGACTCCCTG+CGG - chr1.3:38658980-38658999 MS.gene034581:intron 50.0%
!!! TGCCTTGAGGGTGTCTTTTC+TGG - chr1.3:38662115-38662134 MS.gene034581:CDS 50.0%
AGCCACACCCCCTTGAATTG+TGG - chr1.3:38660214-38660233 MS.gene034581:intron 55.0%
ATGACGAAGACCACGGTGAG+TGG - chr1.3:38659497-38659516 MS.gene034581:CDS 55.0%
ATGAGCCAGCTCCATGGACA+AGG - chr1.3:38660016-38660035 MS.gene034581:intron 55.0%
ATGATCCAACAAGGAGGCGG+GGG - chr1.3:38659341-38659360 MS.gene034581:intron 55.0%
CCAGCAATCCCGGCAATATG+GGG + chr1.3:38659427-38659446 None:intergenic 55.0%
CGCCAGAAAGAGCAACTGAC+TGG + chr1.3:38659468-38659487 None:intergenic 55.0%
GACCAGCAATCCCGGCAATA+TGG + chr1.3:38659429-38659448 None:intergenic 55.0%
GCCCAGTCAGTTGCTCTTTC+TGG - chr1.3:38659463-38659482 MS.gene034581:CDS 55.0%
GGCCAGAAAAGACACCCTCA+AGG + chr1.3:38662120-38662139 None:intergenic 55.0%
GTGACAATGAGCCAGCTCCA+TGG - chr1.3:38660010-38660029 MS.gene034581:intron 55.0%
TGCCACAATTCAAGGGGGTG+TGG + chr1.3:38660219-38660238 None:intergenic 55.0%
! TGCTAGCTTGGCCACACGAA+TGG + chr1.3:38659140-38659159 None:intergenic 55.0%
!! CATTGGTTCAGACTCCCTGC+GGG - chr1.3:38658981-38659000 MS.gene034581:intron 55.0%
CCCCATATTGCCGGGATTGC+TGG - chr1.3:38659424-38659443 MS.gene034581:intron 60.0%
GCAGGCCATGCATACGCCAT+TGG + chr1.3:38658414-38658433 None:intergenic 60.0%
GTTGGCGAACGCCATTCGTG+TGG - chr1.3:38659126-38659145 MS.gene034581:intron 60.0%
TGATCCAACAAGGAGGCGGG+GGG - chr1.3:38659342-38659361 MS.gene034581:intron 60.0%
AGAACCCCCCGCCTCCTTGT+TGG + chr1.3:38659349-38659368 None:intergenic 65.0%
AGGAGGCGGGGGGTTCTTGT+TGG - chr1.3:38659352-38659371 MS.gene034581:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 38658374 38663000 38658374 ID=MS.gene034581
chr1.3 mRNA 38658374 38663000 38658374 ID=MS.gene034581.t1;Parent=MS.gene034581
chr1.3 exon 38662632 38663000 38662632 ID=MS.gene034581.t1.exon1;Parent=MS.gene034581.t1
chr1.3 CDS 38662632 38663000 38662632 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38661712 38662382 38661712 ID=MS.gene034581.t1.exon2;Parent=MS.gene034581.t1
chr1.3 CDS 38661712 38662382 38661712 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38661510 38661609 38661510 ID=MS.gene034581.t1.exon3;Parent=MS.gene034581.t1
chr1.3 CDS 38661510 38661609 38661510 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38661337 38661398 38661337 ID=MS.gene034581.t1.exon4;Parent=MS.gene034581.t1
chr1.3 CDS 38661337 38661398 38661337 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38660914 38661016 38660914 ID=MS.gene034581.t1.exon5;Parent=MS.gene034581.t1
chr1.3 CDS 38660914 38661016 38660914 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38659431 38659581 38659431 ID=MS.gene034581.t1.exon6;Parent=MS.gene034581.t1
chr1.3 CDS 38659431 38659581 38659431 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38659146 38659336 38659146 ID=MS.gene034581.t1.exon7;Parent=MS.gene034581.t1
chr1.3 CDS 38659146 38659336 38659146 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
chr1.3 exon 38658374 38658661 38658374 ID=MS.gene034581.t1.exon8;Parent=MS.gene034581.t1
chr1.3 CDS 38658374 38658661 38658374 ID=cds.MS.gene034581.t1;Parent=MS.gene034581.t1
Gene Sequence

>MS.gene034581

ATGGAACAAGAGCATAGCAAGCAGCTTCCTTGTGACTCCAATGGCGTATGCATGGCCTGCAAAGAGACGTATCGAGAATTTGAAACTCTCCTTTGCAAAACTTGCAATAAGCCATGGCATATGCCATGTTTACTCCTCCTTCCCACTACAATCTATGATTGGGAATGCCCTGGTTGTTCTCAGCCCAATGACATCAACAAAGTTGCCAGTCCACCTTTGTTTAGCGATGAAGAATTGGCGGAAATGTATGAAGAACTTGTTGCTGGATCCTCTACTGAAAACAACATTGGAAGCAATGTCGTGCTTGATATCTTTGATCGTAGCATTAATTGTTCATACTGCATGGAATTGCTTGAGAAGCCTGTCACTGTTAGTTTCTTTTATTTCCCCTTTTTATCTTTTTAAAAATTAATAATATTTAGTCTTACTTTTCTGACGATTTCCGGTGACGTTGCTTTTAATCTTAACATTGAATTATTTAGATAATTTAATCTAGTTTATTATGGTTAAGTTATCTAAATGATTCGATCTTAATTGAAATGTGCAAACATTTGGTTTTATAAGAATTATTGTTTGAAATTGATTTTTCTTGCTGTAATGTTGTTATCATTGGTTCAGACTCCCTGCGGGCACAATTTTTGCCTAAAGTGTTTTGTGAAATGGATTAAGGATGGAAATGGAAAACGCAATTGCTTGAATTGTAAAACGGTCATTCCAGCAAAGATGACCAAGAATCCAAAAATCAATTTTCAGTTGGCGAACGCCATTCGTGTGGCCAAGCTAGCAAGATCTGAGAGTGTTGGAGCAAGCATTTCTACAGAGGTTTCTCATATTGTTCACGATGATCAGCTTCCTGACACTTGTTACAAGACTGAGATAACAAAGAAATCAGGAAAAGCTAATGTTGTTGGTGGGAAGATATTTGTGACGATTCCAATAGATCATTTTGGACCGATTATTGCTGAGAATGATCCAACAAGGAGGCGGGGGGTTCTTGTTGGTGATACATGGGGAGATAGGATGGAATGTAAGCAATGGGGTGCTCATTTTCCCCATATTGCCGGGATTGCTGGTCAAAGTAGTCAAGGTGCCCAGTCAGTTGCTCTTTCTGGCGGGTACATTGATGACGAAGACCACGGTGAGTGGTTCCTTTATACGGGAAGTGGTGGAAAGGATACTGCTGGTAACAAAGGTACCAATAAAAGGCAATCATCTGATCAACAATTTAAAGATAGGAATGAGGCGTTGAGACTCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTATAAGGTTTGTTTTGATTAACTATTATGAATTAGATTCATATGAATTAACTATCCTATTCGTGAATTTATATGATATTTAGTTTATGTATTGATTTATTTTGTTCAGGTCCCACAAGGAGAAACATTCCTCTTATGCACCAAAAGCAGGAGTGAGATATGACGGAGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAAAACAAGTAAGTACAATTATTGTTTGCAATAGTTATTCAAGTAAATAAATTGAGTAAGACCTAGTGGTTTATCAAACATTGAATATTTATTATTGACAGTGTATCTATGTGTGATAGGGTTATAAAGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGGTTGATTTTTTTTCCTCATATTTTTTTTTCCATGGACGTGTGTTTTTGTAATAATAAAACAAGTGGAAATGTTTAATGGAAAATGCTACTTCTCAAGAAAAATAGCTTCAAGAATTTTTCAAGAAATAGTTGGCAAATTTTAATTGGATGATTTATTTGTCCACTTCCTATTTTTCAGCCACACCCCCTTGAATTGTGGCAAATAGTGCATTGTGATTGGCTATTCTTTATTCTTGAAGAATTCTTGATGTTATTTTTCTAGAGATATAGCATTGCTCATGTTTAATATGATAACTTGGATCAATTTTGTTGGTATGCAGTGATTTATTAGGAGACCGTCCCCGACCACTACCTATAATTGAGGAGTTTAAGGATGCAGTTGACATTACTGAAAGGAAGGGTGATCCATCATGGGACTTTGATGTAAGTGATGTTGTCTACTTATATGTTTTTCTTATATTTTCTAATGTCTTATAGCATTTAATTCAATTTTGTTCATTACATCTGTTCATTGTATTTTAGAAATTATTTTTGTAATTTGTATAACCTGATAATCATAATGATAAAGTTTAGCCAAAAACAACCTACAACATATTAATGGTGAAATTGAGATTAGTCAAACTAGAAATTGACAAACGTGGGTTAGTCAAATCATTCTTAGTTCAGTTTCACAAGAGTCGTGGAAAAGTCATAATTAGTCCAAGACATATGGAACCGATAATTTAACCACAAGGATCATTTTGGAGTTTATAGCTCGTCAAGATAACCAACAAGACTATAATATAGGGGGCATGATCAAAGACATAAACTTGCATGAAAAAGTACTAGTAAGTGTCGTGAAATAACTAATATGAGTCAAAATTGAACGTAGTGAAAAATACAAGAAAAAGTGTCTAAATTGTGTTTTTAAATAAACAAACATAGTCTAAAAAATATTTTATAAATAATATAAGTTTCAAAAACCTGTTTGAGAAAAACTAAATACAAAACATTCTAGATCTAAAACAAAAGAGAATATCAAGACAAGGATTTAGCTACTTCACGACCAACGTATTAGTTGAATCTTTCTCATTTTCACCAAGTTTGACAAGAAGCGTGGGAATGTATGAATCAGTTAAACACGAGTGGAATTCGTAATTTGACCTCAATAGCTCATTTTCAAAATTTATAGGTCAAGATAACAAACACACTAGAATATAGGTAGCATGATCATAGAGAAAAACTTGTGTGCAAAAGGTACTAGAAAATGCCACAAAACATAAGGAATGAGGCAAAATATGGGATCTAGGTTACGTATTTTCAATGAGCTTAGCTGAATATTGAATAATAACACTTTAGTTGATTCTTTGTAGGCTACGATCACAGCCAATAGGATTGTATGATCTGTTTCATTGTCTATAAATGTCACATGTGCATTATATTTTAAGTACATTAAATCAGAAAACATATTATTTTTCATACATTTATCCATTCCTTTCTACATTTATTTATGTTTTTCTATATTTAGTAATTCACAAAAATCGTTAAACACCGTACTTAACATTCTTTTGAGGAGTTAAAGAACTCACAACTTATTGATAGATTTACTTCCATTTGGTGATCTCTTAAATAAAAGTATAATCATTGTTGAGTGCTATGAACGGAATCCTCGACAAACTTTCAAATTCGACAACACTAGACAAATGTTATTTTTTTCAAACTTTTTTTTTAAAGATTTGTAAGGTCTATTAGTATTTGAATTCATACAAATTTCAGGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCACCACTTAGTAAGAAGCCGATGAACATTGTCGATCCTATTGATCGAGTAAAAATAGAAGATGTTACGCCAGAAGAAAAAAAGGTGTCCTTCAAAATCAAGGATAGGTTATTGAAAGGTATATGATCCTTGCTGATAATTAGTAACCTTGTCTATTTTTTCTTAGCTCAATATAGTAGTAAACTTTTTAAGTAAATACAATGTTTTTGTAGAGTTTGTTTGCAATATTTGTCACAACGTGTTAGCTTCCCCTCTTACAACACCTTGTGGTCACAACTTCTGCAAAATCTGCCTTGAGGGTGTCTTTTCTGGCCAAAGTTATATTTCGAAGGGAGAACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATCGTTGATTATCTTCAAAATCCACAGGTACTACTACTAGTATTTTTAAATAGACACATATGAAAGAAAAACATGATTTGAATTTGATATCAATGTTTTTAATATTAGTGTTATTATTTGCTATTGGATTGCATTGATTATTTGTTATGTGAATAACTATATTCTTATTATGACTTATATTTTCACCAATCAAATAGGGAAGGGGTTATTATTCTTCAAATCAATTCCATTCCTTTTAATTGTATCCACAAATTACTACGAAATTACTAGTAGTCCTAATTTACCATGAAACTTTTAAAACCATTTGAAAATATGAAATTTAGAAAGGAATTTAGTGTTTAGTGTTTACCATGATGTCTTTAAATACTTAATATTGATGTGTCTATGCATTTGATTATTTTTGAAGTTTTGTTGCAAATATTTAGTCCAACAAACTAATAACTTTTTTAATTGCAATTTTCAATTTGATGTATTGGTGTTATCTGACTTATAATTTCTTATTTTTTAATAGGTTAATAAAGAAATAATGGATGTCATAGAATCACTCCAACGAGAGGCTGAACAAATGGAGAGTTTTGAAGAATTAATTGCTAAAAGTGATGAAAATCTCATGCTGGATGATAAGATAGAGGTTTCAAAACCTTGTGATTCAAGTGAAATATTTTTGGAAAAAATTAACGAGAATGATCTGAATGCTCCACAAAAGAGGAGGAAAGGTAATGAAGGCAAGGTTGTGGTGAACATGGAAGAAAATATTGATGAGGAGGAATCGGAAAGCAAAAAAATGGATTGCGAGTAG
Protein sequence

>MS.gene034581.t1

MEQEHSKQLPCDSNGVCMACKETYREFETLLCKTCNKPWHMPCLLLLPTTIYDWECPGCSQPNDINKVASPPLFSDEELAEMYEELVAGSSTENNIGSNVVLDIFDRSINCSYCMELLEKPVTTPCGHNFCLKCFVKWIKDGNGKRNCLNCKTVIPAKMTKNPKINFQLANAIRVAKLARSESVGASISTEVSHIVHDDQLPDTCYKTEITKKSGKANVVGGKIFVTIPIDHFGPIIAENDPTRRRGVLVGDTWGDRMECKQWGAHFPHIAGIAGQSSQGAQSVALSGGYIDDEDHGEWFLYTGSGGKDTAGNKGTNKRQSSDQQFKDRNEALRLSCRKGYPVRVIRSHKEKHSSYAPKAGVRYDGVYRIEKCWRKIGKQGYKVCRYLFVRCDNEPAPWTSDLLGDRPRPLPIIEEFKDAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNIVDPIDRVKIEDVTPEEKKVSFKIKDRLLKEFVCNICHNVLASPLTTPCGHNFCKICLEGVFSGQSYISKGEQKNIMKCPTCSTDIVDYLQNPQVNKEIMDVIESLQREAEQMESFEELIAKSDENLMLDDKIEVSKPCDSSEIFLEKINENDLNAPQKRRKGNEGKVVVNMEENIDEEESESKKMDCE