Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016407.t1 | XP_003628092.1 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 2.00E-81 | 312 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016407.t1 | Q06672 | 31.0 | 100 | 69 | 0 | 15 | 114 | 32 | 131 | 4.1e-06 | 53.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016407.t1 | G7LJ82 | 92.2 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.5e-81 | 312.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene016407 | MS.gene020871 | PPI |
MS.gene81244 | MS.gene016407 | PPI |
MS.gene013415 | MS.gene016407 | PPI |
MS.gene38035 | MS.gene016407 | PPI |
MS.gene049387 | MS.gene016407 | PPI |
MS.gene059340 | MS.gene016407 | PPI |
MS.gene38222 | MS.gene016407 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016407.t1 | MTR_8g043450 | 92.195 | 205 | 14 | 1 | 1 | 203 | 1 | 205 | 1.33e-136 | 380 |
MS.gene016407.t1 | MTR_8g043430 | 42.775 | 173 | 92 | 4 | 1 | 170 | 1 | 169 | 8.48e-37 | 126 |
MS.gene016407.t1 | MTR_1g035200 | 52.273 | 132 | 60 | 2 | 1 | 132 | 91 | 219 | 4.76e-35 | 124 |
MS.gene016407.t1 | MTR_8g043410 | 42.748 | 131 | 74 | 1 | 1 | 130 | 1 | 131 | 2.33e-31 | 111 |
MS.gene016407.t1 | MTR_5g006380 | 48.148 | 81 | 41 | 1 | 17 | 96 | 18 | 98 | 1.50e-18 | 78.2 |
MS.gene016407.t1 | MTR_7g086210 | 34.579 | 107 | 67 | 2 | 12 | 116 | 252 | 357 | 4.74e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016407.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene016407.t1 | AT5G27990 | 39.791 | 191 | 93 | 6 | 15 | 204 | 15 | 184 | 6.56e-28 | 104 |
MS.gene016407.t1 | AT3G22510 | 39.806 | 103 | 57 | 3 | 10 | 108 | 23 | 124 | 1.37e-16 | 73.2 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAGTTAGATTCGGATTT+TGG | 0.118567 | 8.2:+58009235 | None:intergenic |
CCCATTAACTGCCTTGTTCA+TGG | 0.257049 | 8.2:+58009210 | None:intergenic |
GGTGGTCCTTGTAGCTTGTT+AGG | 0.297509 | 8.2:+58012487 | None:intergenic |
CGTAATCCAGCTGCTTATTC+TGG | 0.316707 | 8.2:-58011013 | MS.gene016407:CDS |
TCCATGAACAAGGCAGTTAA+TGG | 0.322486 | 8.2:-58009211 | MS.gene016407:CDS |
CAAGCATTCACCGAAGGAAT+TGG | 0.332888 | 8.2:-58012460 | MS.gene016407:CDS |
ATGTACGGAGAATGTTTAGA+AGG | 0.404882 | 8.2:-58011073 | MS.gene016407:CDS |
CGGCGAGTTGGTGAGCTTTG+AGG | 0.405818 | 8.2:+58012368 | None:intergenic |
CATGGAATTCAAGTTAGATT+CGG | 0.413868 | 8.2:+58009228 | None:intergenic |
ATTCTCCGTACATAATCATT+AGG | 0.419425 | 8.2:+58011083 | None:intergenic |
TGAAGATGGTAGCGATGAAC+AGG | 0.428791 | 8.2:-58012136 | MS.gene016407:intron |
TGCTTATTCTGGTGTGCAAA+AGG | 0.442639 | 8.2:-58011002 | MS.gene016407:intron |
TTCCTTCGGTGAATGCTTGA+AGG | 0.447098 | 8.2:+58012464 | None:intergenic |
ATTCACCGAAGGAATTGGTT+TGG | 0.452171 | 8.2:-58012455 | MS.gene016407:CDS |
TCGCCGCTGATGTCCTTGCT+TGG | 0.458421 | 8.2:-58012351 | MS.gene016407:CDS |
AATCCAGGTGAAGGAGATGA+TGG | 0.464837 | 8.2:-58009160 | MS.gene016407:CDS |
CCATGAACAAGGCAGTTAAT+GGG | 0.478078 | 8.2:-58009210 | MS.gene016407:CDS |
CTTGAAAACTTACTCTATCA+AGG | 0.485832 | 8.2:-58012183 | MS.gene016407:CDS |
CAAAACCAAACCAATTCCTT+CGG | 0.487339 | 8.2:+58012450 | None:intergenic |
GGGTCTCAGCCGGAAAATCC+AGG | 0.517000 | 8.2:-58009190 | MS.gene016407:CDS |
ATGCTGTGCTAGATTGTGAA+TGG | 0.520448 | 8.2:-58009331 | MS.gene016407:intron |
TGCACACCAGAATAAGCAGC+TGG | 0.521274 | 8.2:+58011007 | None:intergenic |
TCACCTGGATTATCCTCACC+TGG | 0.521450 | 8.2:+58009172 | None:intergenic |
CATCCATCATCTCCTTCACC+TGG | 0.522549 | 8.2:+58009157 | None:intergenic |
TCCTTCGGTGAATGCTTGAA+GGG | 0.524962 | 8.2:+58012465 | None:intergenic |
GCCGTTGAAAATGAGTGGGC+TGG | 0.531900 | 8.2:-58012403 | MS.gene016407:CDS |
GGCAGTTAATGGGTCTCAGC+CGG | 0.532626 | 8.2:-58009200 | MS.gene016407:CDS |
CAAGGACATCAGCGGCGAGT+TGG | 0.532997 | 8.2:+58012356 | None:intergenic |
CGGTTCGGAGCGCCGACCAA+CGG | 0.534881 | 8.2:+58012425 | None:intergenic |
GTCAATATAGTGATTGAAGA+TGG | 0.545813 | 8.2:-58012150 | MS.gene016407:CDS |
TGGATTGAGTGAACCAAGCA+AGG | 0.551697 | 8.2:+58012338 | None:intergenic |
TGCTAGATTGTGAATGGCAA+TGG | 0.553024 | 8.2:-58009325 | MS.gene016407:intron |
AATCCAGGTGAGGATAATCC+AGG | 0.559977 | 8.2:-58009175 | MS.gene016407:CDS |
GGACGATAATTCAGCAAACA+TGG | 0.569749 | 8.2:-58009269 | MS.gene016407:CDS |
GAAGACCTAATGATTATGTA+CGG | 0.576974 | 8.2:-58011088 | MS.gene016407:CDS |
TCGGTGAATGCTTGAAGGGG+TGG | 0.580683 | 8.2:+58012469 | None:intergenic |
TAATTCAGCAAACATGGATG+TGG | 0.582482 | 8.2:-58009263 | MS.gene016407:CDS |
AAAACTTACTCTATCAAGGA+GGG | 0.590140 | 8.2:-58012179 | MS.gene016407:CDS |
GCTTGGTTCACTCAATCCAA+AGG | 0.593121 | 8.2:-58012334 | MS.gene016407:intron |
ATGGATGGTCTGTTGTCTCA+AGG | 0.606611 | 8.2:-58009141 | MS.gene016407:CDS |
GAACCGCCGTTGAAAATGAG+TGG | 0.611433 | 8.2:-58012408 | MS.gene016407:CDS |
GGTGAGGATAATCCAGGTGA+AGG | 0.612481 | 8.2:-58009169 | MS.gene016407:CDS |
AACCGCCGTTGAAAATGAGT+GGG | 0.615075 | 8.2:-58012407 | MS.gene016407:CDS |
CAGGTGAAGGAGATGATGGA+TGG | 0.615703 | 8.2:-58009156 | MS.gene016407:CDS |
ACGAATCCTAACAAGCTACA+AGG | 0.631057 | 8.2:-58012493 | MS.gene016407:CDS |
CCTTCGGTGAATGCTTGAAG+GGG | 0.635643 | 8.2:+58012466 | None:intergenic |
TAACTTGAATTCCATGAACA+AGG | 0.636334 | 8.2:-58009221 | MS.gene016407:CDS |
CCCCTTCAAGCATTCACCGA+AGG | 0.638533 | 8.2:-58012466 | MS.gene016407:CDS |
GAAAACTTACTCTATCAAGG+AGG | 0.642840 | 8.2:-58012180 | MS.gene016407:CDS |
GAACCAAGCAAGGACATCAG+CGG | 0.665981 | 8.2:+58012348 | None:intergenic |
TCAGCCGGAAAATCCAGGTG+AGG | 0.693925 | 8.2:-58009185 | MS.gene016407:CDS |
GATGGTCTGTTGTCTCAAGG+AGG | 0.721375 | 8.2:-58009138 | MS.gene016407:CDS |
TGATTCTGATGATAACACTG+AGG | 0.835231 | 8.2:-58009290 | MS.gene016407:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAACTATTAGAATTT+GGG | - | chr8.2:58009730-58009749 | MS.gene016407:intron | 10.0% |
!!! | TATGATATTATTATTTTGTT+TGG | - | chr8.2:58011663-58011682 | MS.gene016407:intron | 10.0% |
!!! | TTAAATTATGTATTTGTTTT+TGG | - | chr8.2:58009517-58009536 | MS.gene016407:intron | 10.0% |
!! | GATATAAAACTATTAGAATT+TGG | - | chr8.2:58009729-58009748 | MS.gene016407:intron | 15.0% |
!!! | ATATGTTAATTTAGCATTTT+TGG | - | chr8.2:58012175-58012194 | MS.gene016407:CDS | 15.0% |
!! | AAAAAGAAATGATCAACTTT+AGG | - | chr8.2:58011583-58011602 | MS.gene016407:intron | 20.0% |
!! | AAAAGAAATGATCAACTTTA+GGG | - | chr8.2:58011584-58011603 | MS.gene016407:intron | 20.0% |
!! | AATTTGGAAATTAGTCAAAT+GGG | - | chr8.2:58010071-58010090 | MS.gene016407:intron | 20.0% |
!! | ATTTGCAATATCAAATTTGT+AGG | - | chr8.2:58010682-58010701 | MS.gene016407:intron | 20.0% |
!! | CAATTACACAATGTTATATT+AGG | + | chr8.2:58012026-58012045 | None:intergenic | 20.0% |
!! | CAGGAATTAAAAAGAAATAA+TGG | + | chr8.2:58011926-58011945 | None:intergenic | 20.0% |
!! | GATTTAAACTGTGAATAATT+TGG | - | chr8.2:58009581-58009600 | MS.gene016407:intron | 20.0% |
!! | GCTTAAACAATTAAAAAAAC+AGG | + | chr8.2:58009324-58009343 | None:intergenic | 20.0% |
!! | TTTGCAATATCAAATTTGTA+GGG | - | chr8.2:58010683-58010702 | MS.gene016407:intron | 20.0% |
!!! | AATTTAGCATTTTTGGTTTA+TGG | - | chr8.2:58012182-58012201 | MS.gene016407:CDS | 20.0% |
!!! | CATTATTTCTTTTTAATTCC+TGG | - | chr8.2:58011924-58011943 | MS.gene016407:intron | 20.0% |
!!! | CTCTTTTGTTAGTAATTTTA+GGG | - | chr8.2:58010179-58010198 | MS.gene016407:intron | 20.0% |
!!! | GTTTAAAATTATGTTGACAA+AGG | + | chr8.2:58011230-58011249 | None:intergenic | 20.0% |
!!! | TATTATTTTGTTTGGCTTTT+TGG | - | chr8.2:58011671-58011690 | MS.gene016407:intron | 20.0% |
!!! | TCTTTTGTTAGTAATTTTAG+GGG | - | chr8.2:58010180-58010199 | MS.gene016407:intron | 20.0% |
!!! | TTGATCATTTCTTTTTAACA+CGG | + | chr8.2:58011579-58011598 | None:intergenic | 20.0% |
!!! | TTGCAATTTTAACATGTTTA+GGG | + | chr8.2:58010144-58010163 | None:intergenic | 20.0% |
!!! | TTTGCAATTTTAACATGTTT+AGG | + | chr8.2:58010145-58010164 | None:intergenic | 20.0% |
!!! | TTTTTGGAATATTACTTTAC+TGG | - | chr8.2:58009533-58009552 | MS.gene016407:intron | 20.0% |
! | AAAACTATTAGAATTTGGGT+TGG | - | chr8.2:58009734-58009753 | MS.gene016407:intron | 25.0% |
! | AAACAATTTCTCATCATTAG+AGG | + | chr8.2:58011174-58011193 | None:intergenic | 25.0% |
! | AAATAATGGCTTAAAAACTG+GGG | + | chr8.2:58011912-58011931 | None:intergenic | 25.0% |
! | ACATCAAACCATTAATTAGA+TGG | - | chr8.2:58011982-58012001 | MS.gene016407:intron | 25.0% |
! | AGAAATAATGGCTTAAAAAC+TGG | + | chr8.2:58011914-58011933 | None:intergenic | 25.0% |
! | ATTTCTCTGCATTAGAAATT+AGG | - | chr8.2:58011044-58011063 | MS.gene016407:CDS | 25.0% |
! | CAATTTGGAAATTAGTCAAA+TGG | - | chr8.2:58010070-58010089 | MS.gene016407:intron | 25.0% |
! | CCTAAAATTACTAACAAAAG+AGG | + | chr8.2:58010181-58010200 | None:intergenic | 25.0% |
! | CTAATTCAACCTTATAAAAC+CGG | - | chr8.2:58009759-58009778 | MS.gene016407:intron | 25.0% |
! | GAAATAATGGCTTAAAAACT+GGG | + | chr8.2:58011913-58011932 | None:intergenic | 25.0% |
! | GAACATTTCCATCTAATTAA+TGG | + | chr8.2:58011993-58012012 | None:intergenic | 25.0% |
! | GTGATTAATTACAATACCTT+TGG | + | chr8.2:58009295-58009314 | None:intergenic | 25.0% |
! | TCTAATGATGAGAAATTGTT+TGG | - | chr8.2:58011173-58011192 | MS.gene016407:intron | 25.0% |
! | TTGTGTAATTGTAACTTTGA+TGG | - | chr8.2:58012035-58012054 | MS.gene016407:intron | 25.0% |
!! | AAACTATTAGAATTTGGGTT+GGG | - | chr8.2:58009735-58009754 | MS.gene016407:intron | 25.0% |
!! | ATTTTATAAGAGCAACACTT+TGG | + | chr8.2:58009638-58009657 | None:intergenic | 25.0% |
!! | CCAAATTGTTATTAGAAGAA+GGG | + | chr8.2:58010058-58010077 | None:intergenic | 25.0% |
!! | CCTCTTTTGTTAGTAATTTT+AGG | - | chr8.2:58010178-58010197 | MS.gene016407:intron | 25.0% |
!! | GGATATTTAGGTTTATATAG+AGG | - | chr8.2:58011692-58011711 | MS.gene016407:intron | 25.0% |
!! | GTGTTGCTCTTATAAAATTA+CGG | - | chr8.2:58009640-58009659 | MS.gene016407:intron | 25.0% |
!! | TATGATACCATATAGCATTT+TGG | - | chr8.2:58009958-58009977 | MS.gene016407:intron | 25.0% |
!! | TCCAAATTGTTATTAGAAGA+AGG | + | chr8.2:58010059-58010078 | None:intergenic | 25.0% |
!!! | AGGATATTTCAGGTTTTATT+AGG | - | chr8.2:58011793-58011812 | MS.gene016407:intron | 25.0% |
!!! | TAAACAAAAGCATTGATGTT+TGG | - | chr8.2:58010013-58010032 | MS.gene016407:intron | 25.0% |
AAAACTTACTCTATCAAGGA+GGG | - | chr8.2:58009431-58009450 | MS.gene016407:intron | 30.0% | |
AAATTAAGGCACAATGCATT+TGG | - | chr8.2:58010632-58010651 | MS.gene016407:intron | 30.0% | |
AACACATTCAAGGACTAAAT+TGG | - | chr8.2:58010222-58010241 | MS.gene016407:intron | 30.0% | |
ACACACACACACAAATTTAT+TGG | - | chr8.2:58010981-58011000 | MS.gene016407:intron | 30.0% | |
ATTAATGGTTTGATGTAAGC+TGG | + | chr8.2:58011978-58011997 | None:intergenic | 30.0% | |
ATTCTCCGTACATAATCATT+AGG | + | chr8.2:58010530-58010549 | None:intergenic | 30.0% | |
CACAAATTCTATTTGACCAA+GGG | + | chr8.2:58010388-58010407 | None:intergenic | 30.0% | |
CCACTTATAAACAATTGTTC+AGG | - | chr8.2:58009813-58009832 | MS.gene016407:intron | 30.0% | |
CCCTTCTTCTAATAACAATT+TGG | - | chr8.2:58010055-58010074 | MS.gene016407:intron | 30.0% | |
CCTGAACAATTGTTTATAAG+TGG | + | chr8.2:58009816-58009835 | None:intergenic | 30.0% | |
CTGAAATATCCTTTAAGCAA+GGG | + | chr8.2:58011785-58011804 | None:intergenic | 30.0% | |
CTTGAAAACTTACTCTATCA+AGG | - | chr8.2:58009427-58009446 | MS.gene016407:intron | 30.0% | |
GAAGACCTAATGATTATGTA+CGG | - | chr8.2:58010522-58010541 | MS.gene016407:intron | 30.0% | |
GGATTTCAATTTCTACATGA+TGG | - | chr8.2:58010725-58010744 | MS.gene016407:intron | 30.0% | |
GTACATGTTTGTGATAATAC+AGG | - | chr8.2:58010494-58010513 | MS.gene016407:intron | 30.0% | |
GTCAATATAGTGATTGAAGA+TGG | - | chr8.2:58009460-58009479 | MS.gene016407:intron | 30.0% | |
TAACTTGAATTCCATGAACA+AGG | - | chr8.2:58012389-58012408 | MS.gene016407:CDS | 30.0% | |
TATCACTATAACTGCAATTG+AGG | + | chr8.2:58009713-58009732 | None:intergenic | 30.0% | |
TCTTGACAGCAAAAATTTAG+AGG | - | chr8.2:58011715-58011734 | MS.gene016407:intron | 30.0% | |
! | AGTATTTGAGTTTGAGTTTC+CGG | - | chr8.2:58011755-58011774 | MS.gene016407:intron | 30.0% |
! | CAAGTATTTTCCTACAAGTT+GGG | + | chr8.2:58012075-58012094 | None:intergenic | 30.0% |
! | CATGGAATTCAAGTTAGATT+CGG | + | chr8.2:58012385-58012404 | None:intergenic | 30.0% |
! | CTTGATAGAGTAAGTTTTCA+AGG | + | chr8.2:58009429-58009448 | None:intergenic | 30.0% |
! | GGTATGTGTTTGATTGATTT+AGG | - | chr8.2:58010704-58010723 | MS.gene016407:intron | 30.0% |
! | TCTACATGATGGCATATTTT+AGG | - | chr8.2:58010736-58010755 | MS.gene016407:intron | 30.0% |
!! | ATACCATATAGCATTTTGGT+TGG | - | chr8.2:58009962-58009981 | MS.gene016407:intron | 30.0% |
!! | CGGTTTTATAAGGTTGAATT+AGG | + | chr8.2:58009761-58009780 | None:intergenic | 30.0% |
!! | TTCAAGTTAGATTCGGATTT+TGG | + | chr8.2:58012378-58012397 | None:intergenic | 30.0% |
!!! | GTTTGGCTTTTTGGATATTT+AGG | - | chr8.2:58011680-58011699 | MS.gene016407:intron | 30.0% |
!!! | TACCATATAGCATTTTGGTT+GGG | - | chr8.2:58009963-58009982 | MS.gene016407:intron | 30.0% |
!!! | TATTTCAGGTTTTATTAGGC+CGG | - | chr8.2:58011797-58011816 | MS.gene016407:intron | 30.0% |
ACTCATGACATGTGTAATCA+AGG | + | chr8.2:58012220-58012239 | None:intergenic | 35.0% | |
AGGGTCAATGATCTCAATTT+AGG | + | chr8.2:58010039-58010058 | None:intergenic | 35.0% | |
ATGTACGGAGAATGTTTAGA+AGG | - | chr8.2:58010537-58010556 | MS.gene016407:intron | 35.0% | |
CAAAACCAAACCAATTCCTT+CGG | + | chr8.2:58009163-58009182 | None:intergenic | 35.0% | |
CAACAGCTAATGGAGATATT+TGG | + | chr8.2:58011435-58011454 | None:intergenic | 35.0% | |
CCAACTTGTAGGAAAATACT+TGG | - | chr8.2:58012073-58012092 | MS.gene016407:intron | 35.0% | |
CCTGAAATATCCTTTAAGCA+AGG | + | chr8.2:58011786-58011805 | None:intergenic | 35.0% | |
CCTTATAAAACCGGAATGTA+AGG | - | chr8.2:58009768-58009787 | MS.gene016407:intron | 35.0% | |
CCTTGCTTAAAGGATATTTC+AGG | - | chr8.2:58011783-58011802 | MS.gene016407:intron | 35.0% | |
GAAAACTTACTCTATCAAGG+AGG | - | chr8.2:58009430-58009449 | MS.gene016407:intron | 35.0% | |
GACAGCAAGTTACACTTATA+GGG | - | chr8.2:58010345-58010364 | MS.gene016407:intron | 35.0% | |
GCACAAATTCTATTTGACCA+AGG | + | chr8.2:58010389-58010408 | None:intergenic | 35.0% | |
GCATAAACTCACAAAAAGCA+CGG | + | chr8.2:58011079-58011098 | None:intergenic | 35.0% | |
GCTAATGTATCAACAGCTAA+TGG | + | chr8.2:58011445-58011464 | None:intergenic | 35.0% | |
GGTGTGCAAAAGGTAAATTA+AGG | - | chr8.2:58010618-58010637 | MS.gene016407:intron | 35.0% | |
GTCAGGAAATCAACTACAAT+AGG | + | chr8.2:58012120-58012139 | None:intergenic | 35.0% | |
GTCTCAAGGAGGAAAAATAA+GGG | - | chr8.2:58012483-58012502 | MS.gene016407:CDS | 35.0% | |
GTTGATACATTAGCTGTTGA+CGG | - | chr8.2:58011451-58011470 | MS.gene016407:intron | 35.0% | |
GTTTAGGGACTATATTGACA+GGG | + | chr8.2:58010129-58010148 | None:intergenic | 35.0% | |
TAATTCAGCAAACATGGATG+TGG | - | chr8.2:58012347-58012366 | MS.gene016407:CDS | 35.0% | |
TGACAGCAAGTTACACTTAT+AGG | - | chr8.2:58010344-58010363 | MS.gene016407:intron | 35.0% | |
TGATTCTGATGATAACACTG+AGG | - | chr8.2:58012320-58012339 | MS.gene016407:intron | 35.0% | |
TGCAATTGAGGAAACATTTG+TGG | + | chr8.2:58009701-58009720 | None:intergenic | 35.0% | |
TGTCTCAAGGAGGAAAAATA+AGG | - | chr8.2:58012482-58012501 | MS.gene016407:CDS | 35.0% | |
TGTTTAGGGACTATATTGAC+AGG | + | chr8.2:58010130-58010149 | None:intergenic | 35.0% | |
TGTTTATGAGTCCCTTTGTA+AGG | + | chr8.2:58009999-58010018 | None:intergenic | 35.0% | |
TTAAAAACTGGGGAGAATGT+AGG | + | chr8.2:58011902-58011921 | None:intergenic | 35.0% | |
TTCTGAGTACTTCTCTTGAA+AGG | + | chr8.2:58011836-58011855 | None:intergenic | 35.0% | |
! | ATGTAAGCTGGTTTATTGAG+GGG | + | chr8.2:58011966-58011985 | None:intergenic | 35.0% |
! | CCAAGTATTTTCCTACAAGT+TGG | + | chr8.2:58012076-58012095 | None:intergenic | 35.0% |
! | GATGTAAGCTGGTTTATTGA+GGG | + | chr8.2:58011967-58011986 | None:intergenic | 35.0% |
! | TATAAAGCGTTTCTGTGAAG+AGG | + | chr8.2:58009399-58009418 | None:intergenic | 35.0% |
! | TATTTGGAGCATGATCTGAA+TGG | - | chr8.2:58009899-58009918 | MS.gene016407:intron | 35.0% |
! | TCCTTGAATGTGTTTTTCCT+CGG | + | chr8.2:58010216-58010235 | None:intergenic | 35.0% |
! | TGACAGTGGTATTGAAGAAT+CGG | - | chr8.2:58011495-58011514 | MS.gene016407:intron | 35.0% |
! | TGATGTAAGCTGGTTTATTG+AGG | + | chr8.2:58011968-58011987 | None:intergenic | 35.0% |
! | TTTGCCATTTCGATTCATTC+AGG | - | chr8.2:58010314-58010333 | MS.gene016407:intron | 35.0% |
!! | ACATGATGGCATATTTTAGG+AGG | - | chr8.2:58010739-58010758 | MS.gene016407:intron | 35.0% |
!! | AGTGTAACTTGCTGTCATAT+TGG | + | chr8.2:58010341-58010360 | None:intergenic | 35.0% |
!! | CACTTCTAGGACTAGATATT+TGG | - | chr8.2:58009883-58009902 | MS.gene016407:intron | 35.0% |
!! | CCTTACATTCCGGTTTTATA+AGG | + | chr8.2:58009771-58009790 | None:intergenic | 35.0% |
!! | GACACAAACTCTAGTCTTAT+TGG | - | chr8.2:58010866-58010885 | MS.gene016407:intron | 35.0% |
!! | TACTAACAAAAGAGGCACTA+GGG | + | chr8.2:58010173-58010192 | None:intergenic | 35.0% |
!! | TGTTTTTGTCAGTGAAAGCA+AGG | + | chr8.2:58011104-58011123 | None:intergenic | 35.0% |
!! | TTACTAACAAAAGAGGCACT+AGG | + | chr8.2:58010174-58010193 | None:intergenic | 35.0% |
!!! | ATTTCAGGTTTTATTAGGCC+GGG | - | chr8.2:58011798-58011817 | MS.gene016407:intron | 35.0% |
AAGGCACAATGCATTTGGAA+TGG | - | chr8.2:58010637-58010656 | MS.gene016407:intron | 40.0% | |
ACCGAGGAAAAACACATTCA+AGG | - | chr8.2:58010212-58010231 | MS.gene016407:intron | 40.0% | |
ACGAATCCTAACAAGCTACA+AGG | - | chr8.2:58009117-58009136 | MS.gene016407:CDS | 40.0% | |
AGGTGTGAAGGAATATCAGA+GGG | + | chr8.2:58011287-58011306 | None:intergenic | 40.0% | |
ATAGCCTATTCAAGATCCGT+TGG | + | chr8.2:58009941-58009960 | None:intergenic | 40.0% | |
ATGCTGTGCTAGATTGTGAA+TGG | - | chr8.2:58012279-58012298 | MS.gene016407:intron | 40.0% | |
ATTCACCGAAGGAATTGGTT+TGG | - | chr8.2:58009155-58009174 | MS.gene016407:CDS | 40.0% | |
ATTGTTTATAAGTGGCCGAG+TGG | + | chr8.2:58009808-58009827 | None:intergenic | 40.0% | |
CCATGAACAAGGCAGTTAAT+GGG | - | chr8.2:58012400-58012419 | MS.gene016407:CDS | 40.0% | |
GCCTAACTCATCCTTACAAA+GGG | - | chr8.2:58009985-58010004 | MS.gene016407:intron | 40.0% | |
GGACGATAATTCAGCAAACA+TGG | - | chr8.2:58012341-58012360 | MS.gene016407:CDS | 40.0% | |
TAAAACCGGAATGTAAGGTG+AGG | - | chr8.2:58009773-58009792 | MS.gene016407:intron | 40.0% | |
TAAGAGTCCCACATTTGAAG+TGG | + | chr8.2:58009844-58009863 | None:intergenic | 40.0% | |
TAATCAACAGCGTTCAATCC+CGG | + | chr8.2:58011621-58011640 | None:intergenic | 40.0% | |
TAGCCTATTCAAGATCCGTT+GGG | + | chr8.2:58009940-58009959 | None:intergenic | 40.0% | |
TATCTAGCGTACTCCAACAA+AGG | + | chr8.2:58010895-58010914 | None:intergenic | 40.0% | |
TCCATGAACAAGGCAGTTAA+TGG | - | chr8.2:58012399-58012418 | MS.gene016407:CDS | 40.0% | |
TCCCTTTGTAAGGATGAGTT+AGG | + | chr8.2:58009989-58010008 | None:intergenic | 40.0% | |
TGCTAGATTGTGAATGGCAA+TGG | - | chr8.2:58012285-58012304 | MS.gene016407:intron | 40.0% | |
TGCTTATTCTGGTGTGCAAA+AGG | - | chr8.2:58010608-58010627 | MS.gene016407:intron | 40.0% | |
TGGTCCTGAATGAATCGAAA+TGG | + | chr8.2:58010321-58010340 | None:intergenic | 40.0% | |
TTGTTTATAAGTGGCCGAGT+GGG | + | chr8.2:58009807-58009826 | None:intergenic | 40.0% | |
! | CCAAAACAGTGATTTTCCCT+TGG | - | chr8.2:58010369-58010388 | MS.gene016407:intron | 40.0% |
! | CCAAGGGAAAATCACTGTTT+TGG | + | chr8.2:58010372-58010391 | None:intergenic | 40.0% |
! | CTGTCATTTAGTCTCATGTC+AGG | + | chr8.2:58012137-58012156 | None:intergenic | 40.0% |
! | GTCTTATTGGCATCCTTTGT+TGG | - | chr8.2:58010879-58010898 | MS.gene016407:intron | 40.0% |
! | TTATCCTCACCTGGATTTTC+CGG | + | chr8.2:58012432-58012451 | None:intergenic | 40.0% |
!! | TAGAGGCTTTTGATGACTCA+CGG | - | chr8.2:58011732-58011751 | MS.gene016407:intron | 40.0% |
!! | TATTTTCCTACAAGTTGGGC+TGG | + | chr8.2:58012071-58012090 | None:intergenic | 40.0% |
!!! | TTGGTTTGGTTTTGAACCGT+TGG | - | chr8.2:58009169-58009188 | MS.gene016407:CDS | 40.0% |
!!! | TTTGGTTTTGAACCGTTGGT+CGG | - | chr8.2:58009173-58009192 | MS.gene016407:CDS | 40.0% |
AAACTGGGGAGAATGTAGGA+AGG | + | chr8.2:58011898-58011917 | None:intergenic | 45.0% | |
AAAGGGTGGGAGAGAAACAT+GGG | + | chr8.2:58011359-58011378 | None:intergenic | 45.0% | |
AACCGCCGTTGAAAATGAGT+GGG | - | chr8.2:58009203-58009222 | MS.gene016407:CDS | 45.0% | |
AAGCAAGGAAGCCTGAGTAT+GGG | + | chr8.2:58011867-58011886 | None:intergenic | 45.0% | |
AAGCTGGTAGGAAATGGTAC+AGG | + | chr8.2:58011263-58011282 | None:intergenic | 45.0% | |
AATCCAGGTGAAGGAGATGA+TGG | - | chr8.2:58012450-58012469 | MS.gene016407:CDS | 45.0% | |
AATCCAGGTGAGGATAATCC+AGG | - | chr8.2:58012435-58012454 | MS.gene016407:CDS | 45.0% | |
ACAGTCCTCACCTTACATTC+CGG | + | chr8.2:58009781-58009800 | None:intergenic | 45.0% | |
ACCACTGTCAATAACCACAG+TGG | + | chr8.2:58011485-58011504 | None:intergenic | 45.0% | |
ACTTTCCCAAACTCAGGCTT+AGG | - | chr8.2:58011409-58011428 | MS.gene016407:intron | 45.0% | |
AGCTGGTAGGAAATGGTACA+GGG | + | chr8.2:58011262-58011281 | None:intergenic | 45.0% | |
AGGAATATCAGAGGGAAAGC+TGG | + | chr8.2:58011279-58011298 | None:intergenic | 45.0% | |
AGGCCATACCACTTCAAATG+TGG | - | chr8.2:58009833-58009852 | MS.gene016407:intron | 45.0% | |
ATATCAGAGGGAAAGCTGGT+AGG | + | chr8.2:58011275-58011294 | None:intergenic | 45.0% | |
ATGGATGGTCTGTTGTCTCA+AGG | - | chr8.2:58012469-58012488 | MS.gene016407:CDS | 45.0% | |
ATTTGGCCTAAGCCTGAGTT+TGG | + | chr8.2:58011418-58011437 | None:intergenic | 45.0% | |
CAAGCATTCACCGAAGGAAT+TGG | - | chr8.2:58009150-58009169 | MS.gene016407:CDS | 45.0% | |
CGCAAGTCTAAGTTTCAGAG+AGG | - | chr8.2:58011200-58011219 | MS.gene016407:intron | 45.0% | |
CGTAATCCAGCTGCTTATTC+TGG | - | chr8.2:58010597-58010616 | MS.gene016407:intron | 45.0% | |
GAAAGGATATTCTCCCAACC+CGG | + | chr8.2:58011819-58011838 | None:intergenic | 45.0% | |
GAGGTGTGAAGGAATATCAG+AGG | + | chr8.2:58011288-58011307 | None:intergenic | 45.0% | |
GCTTGGTTCACTCAATCCAA+AGG | - | chr8.2:58009276-58009295 | MS.gene016407:CDS | 45.0% | |
GGCCATACCACTTCAAATGT+GGG | - | chr8.2:58009834-58009853 | MS.gene016407:intron | 45.0% | |
GGCCCAACCAAAATGCTATA+TGG | + | chr8.2:58009968-58009987 | None:intergenic | 45.0% | |
GGCCTAACTCATCCTTACAA+AGG | - | chr8.2:58009984-58010003 | MS.gene016407:intron | 45.0% | |
GTCAGTTAGACGCATAGGAT+GGG | + | chr8.2:58011321-58011340 | None:intergenic | 45.0% | |
TCCACTGTGGTTATTGACAG+TGG | - | chr8.2:58011481-58011500 | MS.gene016407:intron | 45.0% | |
TCCTTCGGTGAATGCTTGAA+GGG | + | chr8.2:58009148-58009167 | None:intergenic | 45.0% | |
TGGATTGAGTGAACCAAGCA+AGG | + | chr8.2:58009275-58009294 | None:intergenic | 45.0% | |
TGGTTTATTGAGGGGAGGAA+GGG | + | chr8.2:58011958-58011977 | None:intergenic | 45.0% | |
TGTTTATAAGTGGCCGAGTG+GGG | + | chr8.2:58009806-58009825 | None:intergenic | 45.0% | |
TTAGGGGACTAAATTGACCG+AGG | - | chr8.2:58010196-58010215 | MS.gene016407:intron | 45.0% | |
TTCCTTCGGTGAATGCTTGA+AGG | + | chr8.2:58009149-58009168 | None:intergenic | 45.0% | |
TTGCCCAACGGATCTTGAAT+AGG | - | chr8.2:58009934-58009953 | MS.gene016407:intron | 45.0% | |
TTTAGGGACTGCTTGATACC+GGG | - | chr8.2:58011600-58011619 | MS.gene016407:intron | 45.0% | |
TTTGGCCTAAGCCTGAGTTT+GGG | + | chr8.2:58011417-58011436 | None:intergenic | 45.0% | |
! | ACTCATTTTCAACGGCGGTT+CGG | + | chr8.2:58009203-58009222 | None:intergenic | 45.0% |
! | AGTCCTAGAAGTGACTTGTG+AGG | + | chr8.2:58009876-58009895 | None:intergenic | 45.0% |
! | CCCATTAACTGCCTTGTTCA+TGG | + | chr8.2:58012403-58012422 | None:intergenic | 45.0% |
! | CTTTAGGGACTGCTTGATAC+CGG | - | chr8.2:58011599-58011618 | MS.gene016407:intron | 45.0% |
! | GTCCCACATTTGAAGTGGTA+TGG | + | chr8.2:58009839-58009858 | None:intergenic | 45.0% |
! | GTCCTAGAAGTGACTTGTGA+GGG | + | chr8.2:58009875-58009894 | None:intergenic | 45.0% |
! | TAAGCTGGTTTATTGAGGGG+AGG | + | chr8.2:58011963-58011982 | None:intergenic | 45.0% |
! | TCCAGCCCACTCATTTTCAA+CGG | + | chr8.2:58009211-58009230 | None:intergenic | 45.0% |
! | TCCTAGAAGTGACTTGTGAG+GGG | + | chr8.2:58009874-58009893 | None:intergenic | 45.0% |
! | TGAAGATGGTAGCGATGAAC+AGG | - | chr8.2:58009474-58009493 | MS.gene016407:intron | 45.0% |
!! | TGAGAGATGCTAGAGGTGTT+TGG | + | chr8.2:58011384-58011403 | None:intergenic | 45.0% |
!!! | AGGTTTTATTAGGCCGGGTT+GGG | - | chr8.2:58011803-58011822 | MS.gene016407:intron | 45.0% |
AAGGGTGGGAGAGAAACATG+GGG | + | chr8.2:58011358-58011377 | None:intergenic | 50.0% | |
AGCACGTCAGTTAGACGCAT+AGG | + | chr8.2:58011326-58011345 | None:intergenic | 50.0% | |
ATGTAGCCAGCCCAACTTGT+AGG | - | chr8.2:58012062-58012081 | MS.gene016407:intron | 50.0% | |
CAAAGGGTGGGAGAGAAACA+TGG | + | chr8.2:58011360-58011379 | None:intergenic | 50.0% | |
CAAGCAAGGAAGCCTGAGTA+TGG | + | chr8.2:58011868-58011887 | None:intergenic | 50.0% | |
CATCCATCATCTCCTTCACC+TGG | + | chr8.2:58012456-58012475 | None:intergenic | 50.0% | |
CATGTTTCTCTCCCACCCTT+TGG | - | chr8.2:58011358-58011377 | MS.gene016407:intron | 50.0% | |
CCTTCGGTGAATGCTTGAAG+GGG | + | chr8.2:58009147-58009166 | None:intergenic | 50.0% | |
CGTCAGTTAGACGCATAGGA+TGG | + | chr8.2:58011322-58011341 | None:intergenic | 50.0% | |
CTGGTTTATTGAGGGGAGGA+AGG | + | chr8.2:58011959-58011978 | None:intergenic | 50.0% | |
GAACCAAGCAAGGACATCAG+CGG | + | chr8.2:58009265-58009284 | None:intergenic | 50.0% | |
GAACCGCCGTTGAAAATGAG+TGG | - | chr8.2:58009202-58009221 | MS.gene016407:CDS | 50.0% | |
GAATTCGTGCTCCCATACTC+AGG | - | chr8.2:58011853-58011872 | MS.gene016407:intron | 50.0% | |
GAGAGGTGATTGAGGTGTGA+AGG | + | chr8.2:58011299-58011318 | None:intergenic | 50.0% | |
GAGGGAAAGCTGGTAGGAAA+TGG | + | chr8.2:58011269-58011288 | None:intergenic | 50.0% | |
GATGGTCTGTTGTCTCAAGG+AGG | - | chr8.2:58012472-58012491 | MS.gene016407:CDS | 50.0% | |
GGTGAGGATAATCCAGGTGA+AGG | - | chr8.2:58012441-58012460 | MS.gene016407:CDS | 50.0% | |
GGTTTATTGAGGGGAGGAAG+GGG | + | chr8.2:58011957-58011976 | None:intergenic | 50.0% | |
GTTTATAAGTGGCCGAGTGG+GGG | + | chr8.2:58009805-58009824 | None:intergenic | 50.0% | |
GTTTATTGAGGGGAGGAAGG+GGG | + | chr8.2:58011956-58011975 | None:intergenic | 50.0% | |
TAGGATGGGAGAGGTGATTG+AGG | + | chr8.2:58011307-58011326 | None:intergenic | 50.0% | |
TCACCTGGATTATCCTCACC+TGG | + | chr8.2:58012441-58012460 | None:intergenic | 50.0% | |
TCCCCTCACAAGTCACTTCT+AGG | - | chr8.2:58009870-58009889 | MS.gene016407:intron | 50.0% | |
TGCACACCAGAATAAGCAGC+TGG | + | chr8.2:58010606-58010625 | None:intergenic | 50.0% | |
TTAGACGCATAGGATGGGAG+AGG | + | chr8.2:58011316-58011335 | None:intergenic | 50.0% | |
TTTATAAGTGGCCGAGTGGG+GGG | + | chr8.2:58009804-58009823 | None:intergenic | 50.0% | |
! | AGCCCACTCATTTTCAACGG+CGG | + | chr8.2:58009208-58009227 | None:intergenic | 50.0% |
! | TCCTTTAAGCAAGGGTGCAC+CGG | + | chr8.2:58011777-58011796 | None:intergenic | 50.0% |
! | TGACGGAACTTGTTCCACTG+TGG | - | chr8.2:58011468-58011487 | MS.gene016407:intron | 50.0% |
!! | CAGGTGAAGGAGATGATGGA+TGG | - | chr8.2:58012454-58012473 | MS.gene016407:CDS | 50.0% |
!! | GCTAGAGGTGTTTGGCCAAA+GGG | + | chr8.2:58011376-58011395 | None:intergenic | 50.0% |
!! | GGTGGTCCTTGTAGCTTGTT+AGG | + | chr8.2:58009126-58009145 | None:intergenic | 50.0% |
!! | TGCTAGAGGTGTTTGGCCAA+AGG | + | chr8.2:58011377-58011396 | None:intergenic | 50.0% |
!!! | CAGGTTTTATTAGGCCGGGT+TGG | - | chr8.2:58011802-58011821 | MS.gene016407:intron | 50.0% |
ACGCGCACTTTCCCAAACTC+AGG | - | chr8.2:58011403-58011422 | MS.gene016407:intron | 55.0% | |
AGGAAGGTGGCTAGCAAGCA+AGG | + | chr8.2:58011882-58011901 | None:intergenic | 55.0% | |
AGGGTGGGAGAGAAACATGG+GGG | + | chr8.2:58011357-58011376 | None:intergenic | 55.0% | |
CCCCTTCAAGCATTCACCGA+AGG | - | chr8.2:58009144-58009163 | MS.gene016407:CDS | 55.0% | |
CCTGACAGCAAGTTGCCCAA+CGG | - | chr8.2:58009922-58009941 | MS.gene016407:intron | 55.0% | |
CTGGGGAGAATGTAGGAAGG+TGG | + | chr8.2:58011895-58011914 | None:intergenic | 55.0% | |
GCCGTTGAAAATGAGTGGGC+TGG | - | chr8.2:58009207-58009226 | MS.gene016407:CDS | 55.0% | |
TCAGCCGGAAAATCCAGGTG+AGG | - | chr8.2:58012425-58012444 | MS.gene016407:CDS | 55.0% | |
TCCGGTGCACCCTTGCTTAA+AGG | - | chr8.2:58011773-58011792 | MS.gene016407:intron | 55.0% | |
TCGGTGAATGCTTGAAGGGG+TGG | + | chr8.2:58009144-58009163 | None:intergenic | 55.0% | |
! | GAGGTGTTTGGCCAAAGGGT+GGG | + | chr8.2:58011372-58011391 | None:intergenic | 55.0% |
! | GGCAGTTAATGGGTCTCAGC+CGG | - | chr8.2:58012410-58012429 | MS.gene016407:CDS | 55.0% |
!! | AGAGGTGTTTGGCCAAAGGG+TGG | + | chr8.2:58011373-58011392 | None:intergenic | 55.0% |
CAAGGACATCAGCGGCGAGT+TGG | + | chr8.2:58009257-58009276 | None:intergenic | 60.0% | |
GGGTCTCAGCCGGAAAATCC+AGG | - | chr8.2:58012420-58012439 | MS.gene016407:CDS | 60.0% | |
GGGTGGGAGAGAAACATGGG+GGG | + | chr8.2:58011356-58011375 | None:intergenic | 60.0% | |
GTGCGCGTGAGAGATGCTAG+AGG | + | chr8.2:58011391-58011410 | None:intergenic | 60.0% | |
TCGCCGCTGATGTCCTTGCT+TGG | - | chr8.2:58009259-58009278 | MS.gene016407:CDS | 60.0% | |
TGAGGGGAGGAAGGGGGTAA+TGG | + | chr8.2:58011950-58011969 | None:intergenic | 60.0% | |
!! | CCGTTGGGCAACTTGCTGTC+AGG | + | chr8.2:58009925-58009944 | None:intergenic | 60.0% |
!! | CGGCGAGTTGGTGAGCTTTG+AGG | + | chr8.2:58009245-58009264 | None:intergenic | 60.0% |
GTGAGGACTGTCCCCCCACT+CGG | - | chr8.2:58009790-58009809 | MS.gene016407:intron | 65.0% | |
! | GGAGGAAGGGGGTAATGGCC+AGG | + | chr8.2:58011945-58011964 | None:intergenic | 65.0% |
!! | CGGTTCGGAGCGCCGACCAA+CGG | + | chr8.2:58009188-58009207 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 58009114 | 58012518 | 58009114 | ID=MS.gene016407 |
chr8.2 | mRNA | 58009114 | 58012518 | 58009114 | ID=MS.gene016407.t1;Parent=MS.gene016407 |
chr8.2 | exon | 58012335 | 58012518 | 58012335 | ID=MS.gene016407.t1.exon1;Parent=MS.gene016407.t1 |
chr8.2 | CDS | 58012335 | 58012518 | 58012335 | ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1 |
chr8.2 | exon | 58012137 | 58012225 | 58012137 | ID=MS.gene016407.t1.exon2;Parent=MS.gene016407.t1 |
chr8.2 | CDS | 58012137 | 58012225 | 58012137 | ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1 |
chr8.2 | exon | 58011003 | 58011116 | 58011003 | ID=MS.gene016407.t1.exon3;Parent=MS.gene016407.t1 |
chr8.2 | CDS | 58011003 | 58011116 | 58011003 | ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1 |
chr8.2 | exon | 58009114 | 58009341 | 58009114 | ID=MS.gene016407.t1.exon4;Parent=MS.gene016407.t1 |
chr8.2 | CDS | 58009114 | 58009341 | 58009114 | ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1 |
Gene Sequence |
Protein sequence |