AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016407


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016407.t1 MTR_8g043450 92.195 205 14 1 1 203 1 205 1.33e-136 380
MS.gene016407.t1 MTR_8g043430 42.775 173 92 4 1 170 1 169 8.48e-37 126
MS.gene016407.t1 MTR_1g035200 52.273 132 60 2 1 132 91 219 4.76e-35 124
MS.gene016407.t1 MTR_8g043410 42.748 131 74 1 1 130 1 131 2.33e-31 111
MS.gene016407.t1 MTR_5g006380 48.148 81 41 1 17 96 18 98 1.50e-18 78.2
MS.gene016407.t1 MTR_7g086210 34.579 107 67 2 12 116 252 357 4.74e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016407.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene016407.t1 AT5G27990 39.791 191 93 6 15 204 15 184 6.56e-28 104
MS.gene016407.t1 AT3G22510 39.806 103 57 3 10 108 23 124 1.37e-16 73.2

Find 53 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTTAGATTCGGATTT+TGG 0.118567 8.2:+58009235 None:intergenic
CCCATTAACTGCCTTGTTCA+TGG 0.257049 8.2:+58009210 None:intergenic
GGTGGTCCTTGTAGCTTGTT+AGG 0.297509 8.2:+58012487 None:intergenic
CGTAATCCAGCTGCTTATTC+TGG 0.316707 8.2:-58011013 MS.gene016407:CDS
TCCATGAACAAGGCAGTTAA+TGG 0.322486 8.2:-58009211 MS.gene016407:CDS
CAAGCATTCACCGAAGGAAT+TGG 0.332888 8.2:-58012460 MS.gene016407:CDS
ATGTACGGAGAATGTTTAGA+AGG 0.404882 8.2:-58011073 MS.gene016407:CDS
CGGCGAGTTGGTGAGCTTTG+AGG 0.405818 8.2:+58012368 None:intergenic
CATGGAATTCAAGTTAGATT+CGG 0.413868 8.2:+58009228 None:intergenic
ATTCTCCGTACATAATCATT+AGG 0.419425 8.2:+58011083 None:intergenic
TGAAGATGGTAGCGATGAAC+AGG 0.428791 8.2:-58012136 MS.gene016407:intron
TGCTTATTCTGGTGTGCAAA+AGG 0.442639 8.2:-58011002 MS.gene016407:intron
TTCCTTCGGTGAATGCTTGA+AGG 0.447098 8.2:+58012464 None:intergenic
ATTCACCGAAGGAATTGGTT+TGG 0.452171 8.2:-58012455 MS.gene016407:CDS
TCGCCGCTGATGTCCTTGCT+TGG 0.458421 8.2:-58012351 MS.gene016407:CDS
AATCCAGGTGAAGGAGATGA+TGG 0.464837 8.2:-58009160 MS.gene016407:CDS
CCATGAACAAGGCAGTTAAT+GGG 0.478078 8.2:-58009210 MS.gene016407:CDS
CTTGAAAACTTACTCTATCA+AGG 0.485832 8.2:-58012183 MS.gene016407:CDS
CAAAACCAAACCAATTCCTT+CGG 0.487339 8.2:+58012450 None:intergenic
GGGTCTCAGCCGGAAAATCC+AGG 0.517000 8.2:-58009190 MS.gene016407:CDS
ATGCTGTGCTAGATTGTGAA+TGG 0.520448 8.2:-58009331 MS.gene016407:intron
TGCACACCAGAATAAGCAGC+TGG 0.521274 8.2:+58011007 None:intergenic
TCACCTGGATTATCCTCACC+TGG 0.521450 8.2:+58009172 None:intergenic
CATCCATCATCTCCTTCACC+TGG 0.522549 8.2:+58009157 None:intergenic
TCCTTCGGTGAATGCTTGAA+GGG 0.524962 8.2:+58012465 None:intergenic
GCCGTTGAAAATGAGTGGGC+TGG 0.531900 8.2:-58012403 MS.gene016407:CDS
GGCAGTTAATGGGTCTCAGC+CGG 0.532626 8.2:-58009200 MS.gene016407:CDS
CAAGGACATCAGCGGCGAGT+TGG 0.532997 8.2:+58012356 None:intergenic
CGGTTCGGAGCGCCGACCAA+CGG 0.534881 8.2:+58012425 None:intergenic
GTCAATATAGTGATTGAAGA+TGG 0.545813 8.2:-58012150 MS.gene016407:CDS
TGGATTGAGTGAACCAAGCA+AGG 0.551697 8.2:+58012338 None:intergenic
TGCTAGATTGTGAATGGCAA+TGG 0.553024 8.2:-58009325 MS.gene016407:intron
AATCCAGGTGAGGATAATCC+AGG 0.559977 8.2:-58009175 MS.gene016407:CDS
GGACGATAATTCAGCAAACA+TGG 0.569749 8.2:-58009269 MS.gene016407:CDS
GAAGACCTAATGATTATGTA+CGG 0.576974 8.2:-58011088 MS.gene016407:CDS
TCGGTGAATGCTTGAAGGGG+TGG 0.580683 8.2:+58012469 None:intergenic
TAATTCAGCAAACATGGATG+TGG 0.582482 8.2:-58009263 MS.gene016407:CDS
AAAACTTACTCTATCAAGGA+GGG 0.590140 8.2:-58012179 MS.gene016407:CDS
GCTTGGTTCACTCAATCCAA+AGG 0.593121 8.2:-58012334 MS.gene016407:intron
ATGGATGGTCTGTTGTCTCA+AGG 0.606611 8.2:-58009141 MS.gene016407:CDS
GAACCGCCGTTGAAAATGAG+TGG 0.611433 8.2:-58012408 MS.gene016407:CDS
GGTGAGGATAATCCAGGTGA+AGG 0.612481 8.2:-58009169 MS.gene016407:CDS
AACCGCCGTTGAAAATGAGT+GGG 0.615075 8.2:-58012407 MS.gene016407:CDS
CAGGTGAAGGAGATGATGGA+TGG 0.615703 8.2:-58009156 MS.gene016407:CDS
ACGAATCCTAACAAGCTACA+AGG 0.631057 8.2:-58012493 MS.gene016407:CDS
CCTTCGGTGAATGCTTGAAG+GGG 0.635643 8.2:+58012466 None:intergenic
TAACTTGAATTCCATGAACA+AGG 0.636334 8.2:-58009221 MS.gene016407:CDS
CCCCTTCAAGCATTCACCGA+AGG 0.638533 8.2:-58012466 MS.gene016407:CDS
GAAAACTTACTCTATCAAGG+AGG 0.642840 8.2:-58012180 MS.gene016407:CDS
GAACCAAGCAAGGACATCAG+CGG 0.665981 8.2:+58012348 None:intergenic
TCAGCCGGAAAATCCAGGTG+AGG 0.693925 8.2:-58009185 MS.gene016407:CDS
GATGGTCTGTTGTCTCAAGG+AGG 0.721375 8.2:-58009138 MS.gene016407:CDS
TGATTCTGATGATAACACTG+AGG 0.835231 8.2:-58009290 MS.gene016407:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAACTATTAGAATTT+GGG - chr8.2:58009730-58009749 MS.gene016407:intron 10.0%
!!! TATGATATTATTATTTTGTT+TGG - chr8.2:58011663-58011682 MS.gene016407:intron 10.0%
!!! TTAAATTATGTATTTGTTTT+TGG - chr8.2:58009517-58009536 MS.gene016407:intron 10.0%
!! GATATAAAACTATTAGAATT+TGG - chr8.2:58009729-58009748 MS.gene016407:intron 15.0%
!!! ATATGTTAATTTAGCATTTT+TGG - chr8.2:58012175-58012194 MS.gene016407:CDS 15.0%
!! AAAAAGAAATGATCAACTTT+AGG - chr8.2:58011583-58011602 MS.gene016407:intron 20.0%
!! AAAAGAAATGATCAACTTTA+GGG - chr8.2:58011584-58011603 MS.gene016407:intron 20.0%
!! AATTTGGAAATTAGTCAAAT+GGG - chr8.2:58010071-58010090 MS.gene016407:intron 20.0%
!! ATTTGCAATATCAAATTTGT+AGG - chr8.2:58010682-58010701 MS.gene016407:intron 20.0%
!! CAATTACACAATGTTATATT+AGG + chr8.2:58012026-58012045 None:intergenic 20.0%
!! CAGGAATTAAAAAGAAATAA+TGG + chr8.2:58011926-58011945 None:intergenic 20.0%
!! GATTTAAACTGTGAATAATT+TGG - chr8.2:58009581-58009600 MS.gene016407:intron 20.0%
!! GCTTAAACAATTAAAAAAAC+AGG + chr8.2:58009324-58009343 None:intergenic 20.0%
!! TTTGCAATATCAAATTTGTA+GGG - chr8.2:58010683-58010702 MS.gene016407:intron 20.0%
!!! AATTTAGCATTTTTGGTTTA+TGG - chr8.2:58012182-58012201 MS.gene016407:CDS 20.0%
!!! CATTATTTCTTTTTAATTCC+TGG - chr8.2:58011924-58011943 MS.gene016407:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+GGG - chr8.2:58010179-58010198 MS.gene016407:intron 20.0%
!!! GTTTAAAATTATGTTGACAA+AGG + chr8.2:58011230-58011249 None:intergenic 20.0%
!!! TATTATTTTGTTTGGCTTTT+TGG - chr8.2:58011671-58011690 MS.gene016407:intron 20.0%
!!! TCTTTTGTTAGTAATTTTAG+GGG - chr8.2:58010180-58010199 MS.gene016407:intron 20.0%
!!! TTGATCATTTCTTTTTAACA+CGG + chr8.2:58011579-58011598 None:intergenic 20.0%
!!! TTGCAATTTTAACATGTTTA+GGG + chr8.2:58010144-58010163 None:intergenic 20.0%
!!! TTTGCAATTTTAACATGTTT+AGG + chr8.2:58010145-58010164 None:intergenic 20.0%
!!! TTTTTGGAATATTACTTTAC+TGG - chr8.2:58009533-58009552 MS.gene016407:intron 20.0%
! AAAACTATTAGAATTTGGGT+TGG - chr8.2:58009734-58009753 MS.gene016407:intron 25.0%
! AAACAATTTCTCATCATTAG+AGG + chr8.2:58011174-58011193 None:intergenic 25.0%
! AAATAATGGCTTAAAAACTG+GGG + chr8.2:58011912-58011931 None:intergenic 25.0%
! ACATCAAACCATTAATTAGA+TGG - chr8.2:58011982-58012001 MS.gene016407:intron 25.0%
! AGAAATAATGGCTTAAAAAC+TGG + chr8.2:58011914-58011933 None:intergenic 25.0%
! ATTTCTCTGCATTAGAAATT+AGG - chr8.2:58011044-58011063 MS.gene016407:CDS 25.0%
! CAATTTGGAAATTAGTCAAA+TGG - chr8.2:58010070-58010089 MS.gene016407:intron 25.0%
! CCTAAAATTACTAACAAAAG+AGG + chr8.2:58010181-58010200 None:intergenic 25.0%
! CTAATTCAACCTTATAAAAC+CGG - chr8.2:58009759-58009778 MS.gene016407:intron 25.0%
! GAAATAATGGCTTAAAAACT+GGG + chr8.2:58011913-58011932 None:intergenic 25.0%
! GAACATTTCCATCTAATTAA+TGG + chr8.2:58011993-58012012 None:intergenic 25.0%
! GTGATTAATTACAATACCTT+TGG + chr8.2:58009295-58009314 None:intergenic 25.0%
! TCTAATGATGAGAAATTGTT+TGG - chr8.2:58011173-58011192 MS.gene016407:intron 25.0%
! TTGTGTAATTGTAACTTTGA+TGG - chr8.2:58012035-58012054 MS.gene016407:intron 25.0%
!! AAACTATTAGAATTTGGGTT+GGG - chr8.2:58009735-58009754 MS.gene016407:intron 25.0%
!! ATTTTATAAGAGCAACACTT+TGG + chr8.2:58009638-58009657 None:intergenic 25.0%
!! CCAAATTGTTATTAGAAGAA+GGG + chr8.2:58010058-58010077 None:intergenic 25.0%
!! CCTCTTTTGTTAGTAATTTT+AGG - chr8.2:58010178-58010197 MS.gene016407:intron 25.0%
!! GGATATTTAGGTTTATATAG+AGG - chr8.2:58011692-58011711 MS.gene016407:intron 25.0%
!! GTGTTGCTCTTATAAAATTA+CGG - chr8.2:58009640-58009659 MS.gene016407:intron 25.0%
!! TATGATACCATATAGCATTT+TGG - chr8.2:58009958-58009977 MS.gene016407:intron 25.0%
!! TCCAAATTGTTATTAGAAGA+AGG + chr8.2:58010059-58010078 None:intergenic 25.0%
!!! AGGATATTTCAGGTTTTATT+AGG - chr8.2:58011793-58011812 MS.gene016407:intron 25.0%
!!! TAAACAAAAGCATTGATGTT+TGG - chr8.2:58010013-58010032 MS.gene016407:intron 25.0%
AAAACTTACTCTATCAAGGA+GGG - chr8.2:58009431-58009450 MS.gene016407:intron 30.0%
AAATTAAGGCACAATGCATT+TGG - chr8.2:58010632-58010651 MS.gene016407:intron 30.0%
AACACATTCAAGGACTAAAT+TGG - chr8.2:58010222-58010241 MS.gene016407:intron 30.0%
ACACACACACACAAATTTAT+TGG - chr8.2:58010981-58011000 MS.gene016407:intron 30.0%
ATTAATGGTTTGATGTAAGC+TGG + chr8.2:58011978-58011997 None:intergenic 30.0%
ATTCTCCGTACATAATCATT+AGG + chr8.2:58010530-58010549 None:intergenic 30.0%
CACAAATTCTATTTGACCAA+GGG + chr8.2:58010388-58010407 None:intergenic 30.0%
CCACTTATAAACAATTGTTC+AGG - chr8.2:58009813-58009832 MS.gene016407:intron 30.0%
CCCTTCTTCTAATAACAATT+TGG - chr8.2:58010055-58010074 MS.gene016407:intron 30.0%
CCTGAACAATTGTTTATAAG+TGG + chr8.2:58009816-58009835 None:intergenic 30.0%
CTGAAATATCCTTTAAGCAA+GGG + chr8.2:58011785-58011804 None:intergenic 30.0%
CTTGAAAACTTACTCTATCA+AGG - chr8.2:58009427-58009446 MS.gene016407:intron 30.0%
GAAGACCTAATGATTATGTA+CGG - chr8.2:58010522-58010541 MS.gene016407:intron 30.0%
GGATTTCAATTTCTACATGA+TGG - chr8.2:58010725-58010744 MS.gene016407:intron 30.0%
GTACATGTTTGTGATAATAC+AGG - chr8.2:58010494-58010513 MS.gene016407:intron 30.0%
GTCAATATAGTGATTGAAGA+TGG - chr8.2:58009460-58009479 MS.gene016407:intron 30.0%
TAACTTGAATTCCATGAACA+AGG - chr8.2:58012389-58012408 MS.gene016407:CDS 30.0%
TATCACTATAACTGCAATTG+AGG + chr8.2:58009713-58009732 None:intergenic 30.0%
TCTTGACAGCAAAAATTTAG+AGG - chr8.2:58011715-58011734 MS.gene016407:intron 30.0%
! AGTATTTGAGTTTGAGTTTC+CGG - chr8.2:58011755-58011774 MS.gene016407:intron 30.0%
! CAAGTATTTTCCTACAAGTT+GGG + chr8.2:58012075-58012094 None:intergenic 30.0%
! CATGGAATTCAAGTTAGATT+CGG + chr8.2:58012385-58012404 None:intergenic 30.0%
! CTTGATAGAGTAAGTTTTCA+AGG + chr8.2:58009429-58009448 None:intergenic 30.0%
! GGTATGTGTTTGATTGATTT+AGG - chr8.2:58010704-58010723 MS.gene016407:intron 30.0%
! TCTACATGATGGCATATTTT+AGG - chr8.2:58010736-58010755 MS.gene016407:intron 30.0%
!! ATACCATATAGCATTTTGGT+TGG - chr8.2:58009962-58009981 MS.gene016407:intron 30.0%
!! CGGTTTTATAAGGTTGAATT+AGG + chr8.2:58009761-58009780 None:intergenic 30.0%
!! TTCAAGTTAGATTCGGATTT+TGG + chr8.2:58012378-58012397 None:intergenic 30.0%
!!! GTTTGGCTTTTTGGATATTT+AGG - chr8.2:58011680-58011699 MS.gene016407:intron 30.0%
!!! TACCATATAGCATTTTGGTT+GGG - chr8.2:58009963-58009982 MS.gene016407:intron 30.0%
!!! TATTTCAGGTTTTATTAGGC+CGG - chr8.2:58011797-58011816 MS.gene016407:intron 30.0%
ACTCATGACATGTGTAATCA+AGG + chr8.2:58012220-58012239 None:intergenic 35.0%
AGGGTCAATGATCTCAATTT+AGG + chr8.2:58010039-58010058 None:intergenic 35.0%
ATGTACGGAGAATGTTTAGA+AGG - chr8.2:58010537-58010556 MS.gene016407:intron 35.0%
CAAAACCAAACCAATTCCTT+CGG + chr8.2:58009163-58009182 None:intergenic 35.0%
CAACAGCTAATGGAGATATT+TGG + chr8.2:58011435-58011454 None:intergenic 35.0%
CCAACTTGTAGGAAAATACT+TGG - chr8.2:58012073-58012092 MS.gene016407:intron 35.0%
CCTGAAATATCCTTTAAGCA+AGG + chr8.2:58011786-58011805 None:intergenic 35.0%
CCTTATAAAACCGGAATGTA+AGG - chr8.2:58009768-58009787 MS.gene016407:intron 35.0%
CCTTGCTTAAAGGATATTTC+AGG - chr8.2:58011783-58011802 MS.gene016407:intron 35.0%
GAAAACTTACTCTATCAAGG+AGG - chr8.2:58009430-58009449 MS.gene016407:intron 35.0%
GACAGCAAGTTACACTTATA+GGG - chr8.2:58010345-58010364 MS.gene016407:intron 35.0%
GCACAAATTCTATTTGACCA+AGG + chr8.2:58010389-58010408 None:intergenic 35.0%
GCATAAACTCACAAAAAGCA+CGG + chr8.2:58011079-58011098 None:intergenic 35.0%
GCTAATGTATCAACAGCTAA+TGG + chr8.2:58011445-58011464 None:intergenic 35.0%
GGTGTGCAAAAGGTAAATTA+AGG - chr8.2:58010618-58010637 MS.gene016407:intron 35.0%
GTCAGGAAATCAACTACAAT+AGG + chr8.2:58012120-58012139 None:intergenic 35.0%
GTCTCAAGGAGGAAAAATAA+GGG - chr8.2:58012483-58012502 MS.gene016407:CDS 35.0%
GTTGATACATTAGCTGTTGA+CGG - chr8.2:58011451-58011470 MS.gene016407:intron 35.0%
GTTTAGGGACTATATTGACA+GGG + chr8.2:58010129-58010148 None:intergenic 35.0%
TAATTCAGCAAACATGGATG+TGG - chr8.2:58012347-58012366 MS.gene016407:CDS 35.0%
TGACAGCAAGTTACACTTAT+AGG - chr8.2:58010344-58010363 MS.gene016407:intron 35.0%
TGATTCTGATGATAACACTG+AGG - chr8.2:58012320-58012339 MS.gene016407:intron 35.0%
TGCAATTGAGGAAACATTTG+TGG + chr8.2:58009701-58009720 None:intergenic 35.0%
TGTCTCAAGGAGGAAAAATA+AGG - chr8.2:58012482-58012501 MS.gene016407:CDS 35.0%
TGTTTAGGGACTATATTGAC+AGG + chr8.2:58010130-58010149 None:intergenic 35.0%
TGTTTATGAGTCCCTTTGTA+AGG + chr8.2:58009999-58010018 None:intergenic 35.0%
TTAAAAACTGGGGAGAATGT+AGG + chr8.2:58011902-58011921 None:intergenic 35.0%
TTCTGAGTACTTCTCTTGAA+AGG + chr8.2:58011836-58011855 None:intergenic 35.0%
! ATGTAAGCTGGTTTATTGAG+GGG + chr8.2:58011966-58011985 None:intergenic 35.0%
! CCAAGTATTTTCCTACAAGT+TGG + chr8.2:58012076-58012095 None:intergenic 35.0%
! GATGTAAGCTGGTTTATTGA+GGG + chr8.2:58011967-58011986 None:intergenic 35.0%
! TATAAAGCGTTTCTGTGAAG+AGG + chr8.2:58009399-58009418 None:intergenic 35.0%
! TATTTGGAGCATGATCTGAA+TGG - chr8.2:58009899-58009918 MS.gene016407:intron 35.0%
! TCCTTGAATGTGTTTTTCCT+CGG + chr8.2:58010216-58010235 None:intergenic 35.0%
! TGACAGTGGTATTGAAGAAT+CGG - chr8.2:58011495-58011514 MS.gene016407:intron 35.0%
! TGATGTAAGCTGGTTTATTG+AGG + chr8.2:58011968-58011987 None:intergenic 35.0%
! TTTGCCATTTCGATTCATTC+AGG - chr8.2:58010314-58010333 MS.gene016407:intron 35.0%
!! ACATGATGGCATATTTTAGG+AGG - chr8.2:58010739-58010758 MS.gene016407:intron 35.0%
!! AGTGTAACTTGCTGTCATAT+TGG + chr8.2:58010341-58010360 None:intergenic 35.0%
!! CACTTCTAGGACTAGATATT+TGG - chr8.2:58009883-58009902 MS.gene016407:intron 35.0%
!! CCTTACATTCCGGTTTTATA+AGG + chr8.2:58009771-58009790 None:intergenic 35.0%
!! GACACAAACTCTAGTCTTAT+TGG - chr8.2:58010866-58010885 MS.gene016407:intron 35.0%
!! TACTAACAAAAGAGGCACTA+GGG + chr8.2:58010173-58010192 None:intergenic 35.0%
!! TGTTTTTGTCAGTGAAAGCA+AGG + chr8.2:58011104-58011123 None:intergenic 35.0%
!! TTACTAACAAAAGAGGCACT+AGG + chr8.2:58010174-58010193 None:intergenic 35.0%
!!! ATTTCAGGTTTTATTAGGCC+GGG - chr8.2:58011798-58011817 MS.gene016407:intron 35.0%
AAGGCACAATGCATTTGGAA+TGG - chr8.2:58010637-58010656 MS.gene016407:intron 40.0%
ACCGAGGAAAAACACATTCA+AGG - chr8.2:58010212-58010231 MS.gene016407:intron 40.0%
ACGAATCCTAACAAGCTACA+AGG - chr8.2:58009117-58009136 MS.gene016407:CDS 40.0%
AGGTGTGAAGGAATATCAGA+GGG + chr8.2:58011287-58011306 None:intergenic 40.0%
ATAGCCTATTCAAGATCCGT+TGG + chr8.2:58009941-58009960 None:intergenic 40.0%
ATGCTGTGCTAGATTGTGAA+TGG - chr8.2:58012279-58012298 MS.gene016407:intron 40.0%
ATTCACCGAAGGAATTGGTT+TGG - chr8.2:58009155-58009174 MS.gene016407:CDS 40.0%
ATTGTTTATAAGTGGCCGAG+TGG + chr8.2:58009808-58009827 None:intergenic 40.0%
CCATGAACAAGGCAGTTAAT+GGG - chr8.2:58012400-58012419 MS.gene016407:CDS 40.0%
GCCTAACTCATCCTTACAAA+GGG - chr8.2:58009985-58010004 MS.gene016407:intron 40.0%
GGACGATAATTCAGCAAACA+TGG - chr8.2:58012341-58012360 MS.gene016407:CDS 40.0%
TAAAACCGGAATGTAAGGTG+AGG - chr8.2:58009773-58009792 MS.gene016407:intron 40.0%
TAAGAGTCCCACATTTGAAG+TGG + chr8.2:58009844-58009863 None:intergenic 40.0%
TAATCAACAGCGTTCAATCC+CGG + chr8.2:58011621-58011640 None:intergenic 40.0%
TAGCCTATTCAAGATCCGTT+GGG + chr8.2:58009940-58009959 None:intergenic 40.0%
TATCTAGCGTACTCCAACAA+AGG + chr8.2:58010895-58010914 None:intergenic 40.0%
TCCATGAACAAGGCAGTTAA+TGG - chr8.2:58012399-58012418 MS.gene016407:CDS 40.0%
TCCCTTTGTAAGGATGAGTT+AGG + chr8.2:58009989-58010008 None:intergenic 40.0%
TGCTAGATTGTGAATGGCAA+TGG - chr8.2:58012285-58012304 MS.gene016407:intron 40.0%
TGCTTATTCTGGTGTGCAAA+AGG - chr8.2:58010608-58010627 MS.gene016407:intron 40.0%
TGGTCCTGAATGAATCGAAA+TGG + chr8.2:58010321-58010340 None:intergenic 40.0%
TTGTTTATAAGTGGCCGAGT+GGG + chr8.2:58009807-58009826 None:intergenic 40.0%
! CCAAAACAGTGATTTTCCCT+TGG - chr8.2:58010369-58010388 MS.gene016407:intron 40.0%
! CCAAGGGAAAATCACTGTTT+TGG + chr8.2:58010372-58010391 None:intergenic 40.0%
! CTGTCATTTAGTCTCATGTC+AGG + chr8.2:58012137-58012156 None:intergenic 40.0%
! GTCTTATTGGCATCCTTTGT+TGG - chr8.2:58010879-58010898 MS.gene016407:intron 40.0%
! TTATCCTCACCTGGATTTTC+CGG + chr8.2:58012432-58012451 None:intergenic 40.0%
!! TAGAGGCTTTTGATGACTCA+CGG - chr8.2:58011732-58011751 MS.gene016407:intron 40.0%
!! TATTTTCCTACAAGTTGGGC+TGG + chr8.2:58012071-58012090 None:intergenic 40.0%
!!! TTGGTTTGGTTTTGAACCGT+TGG - chr8.2:58009169-58009188 MS.gene016407:CDS 40.0%
!!! TTTGGTTTTGAACCGTTGGT+CGG - chr8.2:58009173-58009192 MS.gene016407:CDS 40.0%
AAACTGGGGAGAATGTAGGA+AGG + chr8.2:58011898-58011917 None:intergenic 45.0%
AAAGGGTGGGAGAGAAACAT+GGG + chr8.2:58011359-58011378 None:intergenic 45.0%
AACCGCCGTTGAAAATGAGT+GGG - chr8.2:58009203-58009222 MS.gene016407:CDS 45.0%
AAGCAAGGAAGCCTGAGTAT+GGG + chr8.2:58011867-58011886 None:intergenic 45.0%
AAGCTGGTAGGAAATGGTAC+AGG + chr8.2:58011263-58011282 None:intergenic 45.0%
AATCCAGGTGAAGGAGATGA+TGG - chr8.2:58012450-58012469 MS.gene016407:CDS 45.0%
AATCCAGGTGAGGATAATCC+AGG - chr8.2:58012435-58012454 MS.gene016407:CDS 45.0%
ACAGTCCTCACCTTACATTC+CGG + chr8.2:58009781-58009800 None:intergenic 45.0%
ACCACTGTCAATAACCACAG+TGG + chr8.2:58011485-58011504 None:intergenic 45.0%
ACTTTCCCAAACTCAGGCTT+AGG - chr8.2:58011409-58011428 MS.gene016407:intron 45.0%
AGCTGGTAGGAAATGGTACA+GGG + chr8.2:58011262-58011281 None:intergenic 45.0%
AGGAATATCAGAGGGAAAGC+TGG + chr8.2:58011279-58011298 None:intergenic 45.0%
AGGCCATACCACTTCAAATG+TGG - chr8.2:58009833-58009852 MS.gene016407:intron 45.0%
ATATCAGAGGGAAAGCTGGT+AGG + chr8.2:58011275-58011294 None:intergenic 45.0%
ATGGATGGTCTGTTGTCTCA+AGG - chr8.2:58012469-58012488 MS.gene016407:CDS 45.0%
ATTTGGCCTAAGCCTGAGTT+TGG + chr8.2:58011418-58011437 None:intergenic 45.0%
CAAGCATTCACCGAAGGAAT+TGG - chr8.2:58009150-58009169 MS.gene016407:CDS 45.0%
CGCAAGTCTAAGTTTCAGAG+AGG - chr8.2:58011200-58011219 MS.gene016407:intron 45.0%
CGTAATCCAGCTGCTTATTC+TGG - chr8.2:58010597-58010616 MS.gene016407:intron 45.0%
GAAAGGATATTCTCCCAACC+CGG + chr8.2:58011819-58011838 None:intergenic 45.0%
GAGGTGTGAAGGAATATCAG+AGG + chr8.2:58011288-58011307 None:intergenic 45.0%
GCTTGGTTCACTCAATCCAA+AGG - chr8.2:58009276-58009295 MS.gene016407:CDS 45.0%
GGCCATACCACTTCAAATGT+GGG - chr8.2:58009834-58009853 MS.gene016407:intron 45.0%
GGCCCAACCAAAATGCTATA+TGG + chr8.2:58009968-58009987 None:intergenic 45.0%
GGCCTAACTCATCCTTACAA+AGG - chr8.2:58009984-58010003 MS.gene016407:intron 45.0%
GTCAGTTAGACGCATAGGAT+GGG + chr8.2:58011321-58011340 None:intergenic 45.0%
TCCACTGTGGTTATTGACAG+TGG - chr8.2:58011481-58011500 MS.gene016407:intron 45.0%
TCCTTCGGTGAATGCTTGAA+GGG + chr8.2:58009148-58009167 None:intergenic 45.0%
TGGATTGAGTGAACCAAGCA+AGG + chr8.2:58009275-58009294 None:intergenic 45.0%
TGGTTTATTGAGGGGAGGAA+GGG + chr8.2:58011958-58011977 None:intergenic 45.0%
TGTTTATAAGTGGCCGAGTG+GGG + chr8.2:58009806-58009825 None:intergenic 45.0%
TTAGGGGACTAAATTGACCG+AGG - chr8.2:58010196-58010215 MS.gene016407:intron 45.0%
TTCCTTCGGTGAATGCTTGA+AGG + chr8.2:58009149-58009168 None:intergenic 45.0%
TTGCCCAACGGATCTTGAAT+AGG - chr8.2:58009934-58009953 MS.gene016407:intron 45.0%
TTTAGGGACTGCTTGATACC+GGG - chr8.2:58011600-58011619 MS.gene016407:intron 45.0%
TTTGGCCTAAGCCTGAGTTT+GGG + chr8.2:58011417-58011436 None:intergenic 45.0%
! ACTCATTTTCAACGGCGGTT+CGG + chr8.2:58009203-58009222 None:intergenic 45.0%
! AGTCCTAGAAGTGACTTGTG+AGG + chr8.2:58009876-58009895 None:intergenic 45.0%
! CCCATTAACTGCCTTGTTCA+TGG + chr8.2:58012403-58012422 None:intergenic 45.0%
! CTTTAGGGACTGCTTGATAC+CGG - chr8.2:58011599-58011618 MS.gene016407:intron 45.0%
! GTCCCACATTTGAAGTGGTA+TGG + chr8.2:58009839-58009858 None:intergenic 45.0%
! GTCCTAGAAGTGACTTGTGA+GGG + chr8.2:58009875-58009894 None:intergenic 45.0%
! TAAGCTGGTTTATTGAGGGG+AGG + chr8.2:58011963-58011982 None:intergenic 45.0%
! TCCAGCCCACTCATTTTCAA+CGG + chr8.2:58009211-58009230 None:intergenic 45.0%
! TCCTAGAAGTGACTTGTGAG+GGG + chr8.2:58009874-58009893 None:intergenic 45.0%
! TGAAGATGGTAGCGATGAAC+AGG - chr8.2:58009474-58009493 MS.gene016407:intron 45.0%
!! TGAGAGATGCTAGAGGTGTT+TGG + chr8.2:58011384-58011403 None:intergenic 45.0%
!!! AGGTTTTATTAGGCCGGGTT+GGG - chr8.2:58011803-58011822 MS.gene016407:intron 45.0%
AAGGGTGGGAGAGAAACATG+GGG + chr8.2:58011358-58011377 None:intergenic 50.0%
AGCACGTCAGTTAGACGCAT+AGG + chr8.2:58011326-58011345 None:intergenic 50.0%
ATGTAGCCAGCCCAACTTGT+AGG - chr8.2:58012062-58012081 MS.gene016407:intron 50.0%
CAAAGGGTGGGAGAGAAACA+TGG + chr8.2:58011360-58011379 None:intergenic 50.0%
CAAGCAAGGAAGCCTGAGTA+TGG + chr8.2:58011868-58011887 None:intergenic 50.0%
CATCCATCATCTCCTTCACC+TGG + chr8.2:58012456-58012475 None:intergenic 50.0%
CATGTTTCTCTCCCACCCTT+TGG - chr8.2:58011358-58011377 MS.gene016407:intron 50.0%
CCTTCGGTGAATGCTTGAAG+GGG + chr8.2:58009147-58009166 None:intergenic 50.0%
CGTCAGTTAGACGCATAGGA+TGG + chr8.2:58011322-58011341 None:intergenic 50.0%
CTGGTTTATTGAGGGGAGGA+AGG + chr8.2:58011959-58011978 None:intergenic 50.0%
GAACCAAGCAAGGACATCAG+CGG + chr8.2:58009265-58009284 None:intergenic 50.0%
GAACCGCCGTTGAAAATGAG+TGG - chr8.2:58009202-58009221 MS.gene016407:CDS 50.0%
GAATTCGTGCTCCCATACTC+AGG - chr8.2:58011853-58011872 MS.gene016407:intron 50.0%
GAGAGGTGATTGAGGTGTGA+AGG + chr8.2:58011299-58011318 None:intergenic 50.0%
GAGGGAAAGCTGGTAGGAAA+TGG + chr8.2:58011269-58011288 None:intergenic 50.0%
GATGGTCTGTTGTCTCAAGG+AGG - chr8.2:58012472-58012491 MS.gene016407:CDS 50.0%
GGTGAGGATAATCCAGGTGA+AGG - chr8.2:58012441-58012460 MS.gene016407:CDS 50.0%
GGTTTATTGAGGGGAGGAAG+GGG + chr8.2:58011957-58011976 None:intergenic 50.0%
GTTTATAAGTGGCCGAGTGG+GGG + chr8.2:58009805-58009824 None:intergenic 50.0%
GTTTATTGAGGGGAGGAAGG+GGG + chr8.2:58011956-58011975 None:intergenic 50.0%
TAGGATGGGAGAGGTGATTG+AGG + chr8.2:58011307-58011326 None:intergenic 50.0%
TCACCTGGATTATCCTCACC+TGG + chr8.2:58012441-58012460 None:intergenic 50.0%
TCCCCTCACAAGTCACTTCT+AGG - chr8.2:58009870-58009889 MS.gene016407:intron 50.0%
TGCACACCAGAATAAGCAGC+TGG + chr8.2:58010606-58010625 None:intergenic 50.0%
TTAGACGCATAGGATGGGAG+AGG + chr8.2:58011316-58011335 None:intergenic 50.0%
TTTATAAGTGGCCGAGTGGG+GGG + chr8.2:58009804-58009823 None:intergenic 50.0%
! AGCCCACTCATTTTCAACGG+CGG + chr8.2:58009208-58009227 None:intergenic 50.0%
! TCCTTTAAGCAAGGGTGCAC+CGG + chr8.2:58011777-58011796 None:intergenic 50.0%
! TGACGGAACTTGTTCCACTG+TGG - chr8.2:58011468-58011487 MS.gene016407:intron 50.0%
!! CAGGTGAAGGAGATGATGGA+TGG - chr8.2:58012454-58012473 MS.gene016407:CDS 50.0%
!! GCTAGAGGTGTTTGGCCAAA+GGG + chr8.2:58011376-58011395 None:intergenic 50.0%
!! GGTGGTCCTTGTAGCTTGTT+AGG + chr8.2:58009126-58009145 None:intergenic 50.0%
!! TGCTAGAGGTGTTTGGCCAA+AGG + chr8.2:58011377-58011396 None:intergenic 50.0%
!!! CAGGTTTTATTAGGCCGGGT+TGG - chr8.2:58011802-58011821 MS.gene016407:intron 50.0%
ACGCGCACTTTCCCAAACTC+AGG - chr8.2:58011403-58011422 MS.gene016407:intron 55.0%
AGGAAGGTGGCTAGCAAGCA+AGG + chr8.2:58011882-58011901 None:intergenic 55.0%
AGGGTGGGAGAGAAACATGG+GGG + chr8.2:58011357-58011376 None:intergenic 55.0%
CCCCTTCAAGCATTCACCGA+AGG - chr8.2:58009144-58009163 MS.gene016407:CDS 55.0%
CCTGACAGCAAGTTGCCCAA+CGG - chr8.2:58009922-58009941 MS.gene016407:intron 55.0%
CTGGGGAGAATGTAGGAAGG+TGG + chr8.2:58011895-58011914 None:intergenic 55.0%
GCCGTTGAAAATGAGTGGGC+TGG - chr8.2:58009207-58009226 MS.gene016407:CDS 55.0%
TCAGCCGGAAAATCCAGGTG+AGG - chr8.2:58012425-58012444 MS.gene016407:CDS 55.0%
TCCGGTGCACCCTTGCTTAA+AGG - chr8.2:58011773-58011792 MS.gene016407:intron 55.0%
TCGGTGAATGCTTGAAGGGG+TGG + chr8.2:58009144-58009163 None:intergenic 55.0%
! GAGGTGTTTGGCCAAAGGGT+GGG + chr8.2:58011372-58011391 None:intergenic 55.0%
! GGCAGTTAATGGGTCTCAGC+CGG - chr8.2:58012410-58012429 MS.gene016407:CDS 55.0%
!! AGAGGTGTTTGGCCAAAGGG+TGG + chr8.2:58011373-58011392 None:intergenic 55.0%
CAAGGACATCAGCGGCGAGT+TGG + chr8.2:58009257-58009276 None:intergenic 60.0%
GGGTCTCAGCCGGAAAATCC+AGG - chr8.2:58012420-58012439 MS.gene016407:CDS 60.0%
GGGTGGGAGAGAAACATGGG+GGG + chr8.2:58011356-58011375 None:intergenic 60.0%
GTGCGCGTGAGAGATGCTAG+AGG + chr8.2:58011391-58011410 None:intergenic 60.0%
TCGCCGCTGATGTCCTTGCT+TGG - chr8.2:58009259-58009278 MS.gene016407:CDS 60.0%
TGAGGGGAGGAAGGGGGTAA+TGG + chr8.2:58011950-58011969 None:intergenic 60.0%
!! CCGTTGGGCAACTTGCTGTC+AGG + chr8.2:58009925-58009944 None:intergenic 60.0%
!! CGGCGAGTTGGTGAGCTTTG+AGG + chr8.2:58009245-58009264 None:intergenic 60.0%
GTGAGGACTGTCCCCCCACT+CGG - chr8.2:58009790-58009809 MS.gene016407:intron 65.0%
! GGAGGAAGGGGGTAATGGCC+AGG + chr8.2:58011945-58011964 None:intergenic 65.0%
!! CGGTTCGGAGCGCCGACCAA+CGG + chr8.2:58009188-58009207 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 58009114 58012518 58009114 ID=MS.gene016407
chr8.2 mRNA 58009114 58012518 58009114 ID=MS.gene016407.t1;Parent=MS.gene016407
chr8.2 exon 58012335 58012518 58012335 ID=MS.gene016407.t1.exon1;Parent=MS.gene016407.t1
chr8.2 CDS 58012335 58012518 58012335 ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1
chr8.2 exon 58012137 58012225 58012137 ID=MS.gene016407.t1.exon2;Parent=MS.gene016407.t1
chr8.2 CDS 58012137 58012225 58012137 ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1
chr8.2 exon 58011003 58011116 58011003 ID=MS.gene016407.t1.exon3;Parent=MS.gene016407.t1
chr8.2 CDS 58011003 58011116 58011003 ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1
chr8.2 exon 58009114 58009341 58009114 ID=MS.gene016407.t1.exon4;Parent=MS.gene016407.t1
chr8.2 CDS 58009114 58009341 58009114 ID=cds.MS.gene016407.t1;Parent=MS.gene016407.t1
Gene Sequence

>MS.gene016407

ATGACGAATCCTAACAAGCTACAAGGACCACCCCTTCAAGCATTCACCGAAGGAATTGGTTTGGTTTTGAACCGTTGGTCGGCGCTCCGAACCGCCGTTGAAAATGAGTGGGCTGGACGTGACACTAACCTCAAAGCTCACCAACTCGCCGCTGATGTCCTTGCTTGGTTCACTCAATCCAAAGGTATTGTAATTAATCACTTAATTCCTGTTTTTTTAATTGTTTAAGCTTGAATTTTATGATATTCTGATTTTTCATTCATTGTTTTTTTTTTTTCTTTTCCTCTTCACAGAAACGCTTTATATTGATGACCTTGAAAACTTACTCTATCAAGGAGGGCTTTCTGTCAATATAGTGATTGAAGATGGTAGCGATGAACAGGTCTTCATTTTCATTTTTTATTTAAATTATGTATTTGTTTTTGGAATATTACTTTACTGGTTAATTGTTAACTTTGCTAATCAATGATTTAAACTGTGAATAATTTGGTATCACAATGCATTGTGATCTTGTAGAAGCTCCAAAGTGTTGCTCTTATAAAATTACGGTGACTTGTCGTGATTATGTCAAACTCACTATGAATCCACAAATGTTTCCTCAATTGCAGTTATAGTGATATAAAACTATTAGAATTTGGGTTGGGCCTAATTCAACCTTATAAAACCGGAATGTAAGGTGAGGACTGTCCCCCCACTCGGCCACTTATAAACAATTGTTCAGGCCATACCACTTCAAATGTGGGACTCTTAATATAATCCCCTCACAAGTCACTTCTAGGACTAGATATTTGGAGCATGATCTGAATGGCCTGACAGCAAGTTGCCCAACGGATCTTGAATAGGCTATGATACCATATAGCATTTTGGTTGGGCCTAACTCATCCTTACAAAGGGACTCATAAACAAAAGCATTGATGTTTGGCCTAAATTGAGATCATTGACCCTTCTTCTAATAACAATTTGGAAATTAGTCAAATGGGCAAACGACATTTTAGTCTTTGAATGTGTGAAGCCCTGTCAATATAGTCCCTAAACATGTTAAAATTGCAAACATGTCCCTAGTGCCTCTTTTGTTAGTAATTTTAGGGGACTAAATTGACCGAGGAAAAACACATTCAAGGACTAAATTGGCTACTTAAAAACAAATTTGATGATCAAAATGACTAATAAAAAAAACATGTGAAGATGTTTTTTGTTTTTTTTGCCATTTCGATTCATTCAGGACCAATATGACAGCAAGTTACACTTATAGGGACCAAAACAGTGATTTTCCCTTGGTCAAATAGAATTTGTGCTTTGCATGTTCTGCTGACTAGTTACTTGTTGAAGATACATGCATGTATGTTGTGTCTGCATTGTTTGCGTGTTCTTACTTTTTTTGTACATGTTTGTGATAATACAGGTAGCTGAAGACCTAATGATTATGTACGGAGAATGTTTAGAAGGTAATTTTAGCTCTGTTGAGCGTCTCAGAGAAGCTAGTCGTAATCCAGCTGCTTATTCTGGTGTGCAAAAGGTAAATTAAGGCACAATGCATTTGGAATGGAAATTAACTGTTTTATTATTAGATTTGCAATATCAAATTTGTAGGGTATGTGTTTGATTGATTTAGGATTTCAATTTCTACATGATGGCATATTTTAGGAGGAAAGAATATTGAATTATTACTTGATGTGTTGTGTGTTCTATACATTAGTCTCATTAGCATCTTTTAGTGCTCTAGAAATATCTCTTCTATGCTATATATAGATAGACACAAACTCTAGTCTTATTGGCATCCTTTGTTGGAGTACGCTAGATATGTTCTATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAAATTTATTGGAGTGCTGAAATGTATTCGTAAATAAGTTGAGAGTTATTATATTTCTCTGCATTAGAAATTAGGTTAAAGCTACCGTGCTTTTTGTGAGTTTATGCTTCCTTGCTTTCACTGACAAAAACAGTGAAGAGATGCGAACGTGTGTATTTAAGTTTGATAGTACTGTAAATCCTCTAATGATGAGAAATTGTTTGGAAGACGCAAGTCTAAGTTTCAGAGAGGCACTCCTTTGTCAACATAATTTTAAACAATTTTTTTCCCTGTACCATTTCCTACCAGCTTTCCCTCTGATATTCCTTCACACCTCAATCACCTCTCCCATCCTATGCGTCTAACTGACGTGCTTCTAAATCCCCCCATGTTTCTCTCCCACCCTTTGGCCAAACACCTCTAGCATCTCTCACGCGCACTTTCCCAAACTCAGGCTTAGGCCAAATATCTCCATTAGCTGTTGATACATTAGCTGTTGACGGAACTTGTTCCACTGTGGTTATTGACAGTGGTATTGAAGAATCGGATGAAAATTATAATCTTTTCTTCATGATATCTGTGATATGATATAAACTGCTCTTACACCGTGTTAAAAAGAAATGATCAACTTTAGGGACTGCTTGATACCGGGATTGAACGCTGTTGATTAAATTACTTATTCTGTCTACGAGTATGATATTATTATTTTGTTTGGCTTTTTGGATATTTAGGTTTATATAGAGGTCTTGACAGCAAAAATTTAGAGGCTTTTGATGACTCACGGAGTATTTGAGTTTGAGTTTCCGGTGCACCCTTGCTTAAAGGATATTTCAGGTTTTATTAGGCCGGGTTGGGAGAATATCCTTTCAAGAGAAGTACTCAGAATTCGTGCTCCCATACTCAGGCTTCCTTGCTTGCTAGCCACCTTCCTACATTCTCCCCAGTTTTTAAGCCATTATTTCTTTTTAATTCCTGGCCATTACCCCCTTCCTCCCCTCAATAAACCAGCTTACATCAAACCATTAATTAGATGGAAATGTTCTTTCTGTGAACCTAATATAACATTGTGTAATTGTAACTTTGATGGTTCTATGTAGCCAGCCCAACTTGTAGGAAAATACTTGGTTGTTGATTTTCTTGTGAACACCTATTGTAGTTGATTTCCTGACATGAGACTAAATGACAGTAATTGTAAATTTGTTATATATGTTAATTTAGCATTTTTGGTTTATGGATACACATTTTTCCTTGATTACACATGTCATGAGTGCAATTAGATACTTTCATTGAATAATTTTTGAACATTTTATGCTGTGCTAGATTGTGAATGGCAATGGAGACGAAGATGATGATTCTGATGATAACACTGAGGACGATAATTCAGCAAACATGGATGTGGACATTCCAAAATCCGAATCTAACTTGAATTCCATGAACAAGGCAGTTAATGGGTCTCAGCCGGAAAATCCAGGTGAGGATAATCCAGGTGAAGGAGATGATGGATGGTCTGTTGTCTCAAGGAGGAAAAATAAGGGCAGAAAGAATTAG

Protein sequence

>MS.gene016407.t1

MTNPNKLQGPPLQAFTEGIGLVLNRWSALRTAVENEWAGRDTNLKAHQLAADVLAWFTQSKETLYIDDLENLLYQGGLSVNIVIEDGSDEQVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDEDDDSDDNTEDDNSANMDVDIPKSESNLNSMNKAVNGSQPENPGEDNPGEGDDGWSVVSRRKNKGRKN