Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81244.t1 | XP_003617941.2 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81244.t1 | Q9LYK9 | 83.5 | 127 | 19 | 1 | 1 | 127 | 1 | 125 | 1.5e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81244.t1 | I3S2G2 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 7.7e-68 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057092 | MS.gene81244 | 0.812516 | 4.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013415 | MS.gene81244 | PPI |
| MS.gene81244 | MS.gene067809 | PPI |
| MS.gene81244 | MS.gene016407 | PPI |
| MS.gene38035 | MS.gene81244 | PPI |
| MS.gene08205 | MS.gene81244 | PPI |
| MS.gene059340 | MS.gene81244 | PPI |
| MS.gene81244 | MS.gene016408 | PPI |
| MS.gene59772 | MS.gene81244 | PPI |
| MS.gene83159 | MS.gene81244 | PPI |
| MS.gene049387 | MS.gene81244 | PPI |
| MS.gene51868 | MS.gene81244 | PPI |
| MS.gene38222 | MS.gene81244 | PPI |
| MS.gene81244 | MS.gene020871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81244.t1 | MTR_5g097200 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.03e-92 | 263 |
| MS.gene81244.t1 | MTR_3g094220 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 9.15e-82 | 236 |
| MS.gene81244.t1 | MTR_5g097200 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 5.65e-74 | 216 |
| MS.gene81244.t1 | MTR_3g094220 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.26e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81244.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 1.51e-68 | 202 |
| MS.gene81244.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.17e-68 | 202 |
| MS.gene81244.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.19e-68 | 202 |
Find 35 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5.2:+81471085 | None:intergenic |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5.2:-81472950 | MS.gene81244:CDS |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5.2:+81471084 | None:intergenic |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5.2:-81472913 | MS.gene81244:CDS |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5.2:+81471078 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5.2:-81473148 | MS.gene81244:CDS |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5.2:-81471087 | MS.gene81244:CDS |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5.2:+81471051 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5.2:-81471060 | MS.gene81244:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5.2:-81471096 | MS.gene81244:CDS |
| ACCCTCCACAGCGTTTCATC+AGG | 0.473802 | 5.2:-81472309 | MS.gene81244:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5.2:+81473078 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5.2:+81473122 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5.2:+81471069 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5.2:-81472342 | MS.gene81244:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5.2:+81471057 | None:intergenic |
| CGCCTGATGAAACGCTGTGG+AGG | 0.504436 | 5.2:+81472307 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5.2:+81472359 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5.2:+81471086 | None:intergenic |
| CACAGCGTTTCATCAGGCGC+AGG | 0.535977 | 5.2:-81472303 | MS.gene81244:CDS |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5.2:+81472403 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5.2:-81473091 | MS.gene81244:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5.2:-81471057 | MS.gene81244:CDS |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5.2:-81472339 | MS.gene81244:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5.2:-81473145 | MS.gene81244:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5.2:-81473124 | MS.gene81244:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5.2:+81471041 | None:intergenic |
| GCCTGATGAAACGCTGTGGA+GGG | 0.592960 | 5.2:+81472308 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5.2:-81473130 | MS.gene81244:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5.2:-81473074 | MS.gene81244:intron |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5.2:+81471052 | None:intergenic |
| ACAGCGTTTCATCAGGCGCA+GGG | 0.646586 | 5.2:-81472302 | MS.gene81244:intron |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5.2:+81473101 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5.2:-81472962 | MS.gene81244:intron |
| CTGCGCCTGATGAAACGCTG+TGG | 0.679468 | 5.2:+81472304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTGTTTTTTTTTTTTTT+TGG | - | chr5.2:81471820-81471839 | MS.gene81244:intron | 10.0% |
| !!! | TTCTGTTTTTTTTTTTTTTT+GGG | - | chr5.2:81471821-81471840 | MS.gene81244:intron | 10.0% |
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | - | chr5.2:81473161-81473180 | MS.gene81244:intron | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | + | chr5.2:81471405-81471424 | None:intergenic | 15.0% |
| !! | CAGCAAAATATATAATTATA+AGG | + | chr5.2:81473116-81473135 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | + | chr5.2:81472600-81472619 | None:intergenic | 15.0% |
| !! | AAAAAAAACAGAATCAGTTA+AGG | + | chr5.2:81471814-81471833 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | - | chr5.2:81471759-81471778 | MS.gene81244:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | - | chr5.2:81471760-81471779 | MS.gene81244:intron | 20.0% |
| !! | TCTTAAGTTAATAAAACACA+TGG | - | chr5.2:81472125-81472144 | MS.gene81244:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | + | chr5.2:81471757-81471776 | None:intergenic | 20.0% |
| !!! | AAGGATTTGAAATTTATGTA+GGG | + | chr5.2:81471756-81471775 | None:intergenic | 20.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | - | chr5.2:81471499-81471518 | MS.gene81244:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | - | chr5.2:81471500-81471519 | MS.gene81244:intron | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | - | chr5.2:81473127-81473146 | MS.gene81244:CDS | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | + | chr5.2:81472891-81472910 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTTTTGGGT+TGG | - | chr5.2:81471825-81471844 | MS.gene81244:intron | 20.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | + | chr5.2:81472018-81472037 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | - | chr5.2:81472845-81472864 | MS.gene81244:intron | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | + | chr5.2:81472404-81472423 | None:intergenic | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | + | chr5.2:81472339-81472358 | None:intergenic | 25.0% |
| ! | GATTTAGATTTGTCATATAG+TGG | - | chr5.2:81472258-81472277 | MS.gene81244:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | + | chr5.2:81471495-81471514 | None:intergenic | 25.0% |
| ! | TCAATCTATAACAGAAAGTA+AGG | + | chr5.2:81472639-81472658 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | + | chr5.2:81471496-81471515 | None:intergenic | 25.0% |
| !! | ACTTTTGATACTTGAAACTT+TGG | - | chr5.2:81472199-81472218 | MS.gene81244:intron | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | - | chr5.2:81472028-81472047 | MS.gene81244:intron | 25.0% |
| !!! | TTAGTTTGCTTTACATAATG+TGG | - | chr5.2:81472696-81472715 | MS.gene81244:intron | 25.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | - | chr5.2:81471297-81471316 | MS.gene81244:intron | 25.0% |
| AATCCAGACTCATTGAAATA+CGG | + | chr5.2:81473061-81473080 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | + | chr5.2:81471222-81471241 | None:intergenic | 30.0% | |
| ACGGTTTATCAGATCTTATA+TGG | - | chr5.2:81472795-81472814 | MS.gene81244:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | + | chr5.2:81471221-81471240 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | + | chr5.2:81473050-81473069 | None:intergenic | 30.0% | |
| ATTGCCTATGAAATTGTGTA+TGG | - | chr5.2:81472062-81472081 | MS.gene81244:intron | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | + | chr5.2:81472352-81472371 | None:intergenic | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | - | chr5.2:81472914-81472933 | MS.gene81244:CDS | 30.0% | |
| GCATAACAAAGACATAAGAA+TGG | + | chr5.2:81472161-81472180 | None:intergenic | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | + | chr5.2:81473006-81473025 | None:intergenic | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | + | chr5.2:81472436-81472455 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | - | chr5.2:81473061-81473080 | MS.gene81244:intron | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | - | chr5.2:81472382-81472401 | MS.gene81244:CDS | 30.0% | |
| TCTCTGATCTATTCATTTCT+CGG | - | chr5.2:81471074-81471093 | MS.gene81244:CDS | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | - | chr5.2:81472533-81472552 | MS.gene81244:intron | 30.0% | |
| TTCATAAGCTCAATCTGAAT+GGG | - | chr5.2:81471730-81471749 | MS.gene81244:intron | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | - | chr5.2:81471595-81471614 | MS.gene81244:intron | 30.0% | |
| TTTCATAAGCTCAATCTGAA+TGG | - | chr5.2:81471729-81471748 | MS.gene81244:intron | 30.0% | |
| TTTGCTTTACATAATGTGGT+TGG | - | chr5.2:81472700-81472719 | MS.gene81244:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | - | chr5.2:81472971-81472990 | MS.gene81244:intron | 30.0% | |
| ! | AGATTTCTAGGAACAAGTTT+AGG | + | chr5.2:81472588-81472607 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | + | chr5.2:81472575-81472594 | None:intergenic | 30.0% |
| ! | GATTTGATAGATGGAGTATT+AGG | + | chr5.2:81472566-81472585 | None:intergenic | 30.0% |
| AATCACGATAAACCCTACAA+AGG | + | chr5.2:81471775-81471794 | None:intergenic | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | + | chr5.2:81471508-81471527 | None:intergenic | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | + | chr5.2:81471178-81471197 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | - | chr5.2:81471509-81471528 | MS.gene81244:intron | 35.0% | |
| ATAGGGGAAATTAATCGAAG+GGG | + | chr5.2:81472947-81472966 | None:intergenic | 35.0% | |
| CAATCAAGAGGTTTCTTGTT+AGG | - | chr5.2:81471326-81471345 | MS.gene81244:intron | 35.0% | |
| GATAGGGGAAATTAATCGAA+GGG | + | chr5.2:81472948-81472967 | None:intergenic | 35.0% | |
| GATGACATACTACATTGAGA+AGG | + | chr5.2:81472506-81472525 | None:intergenic | 35.0% | |
| GTCTCCATACACAATTTCAT+AGG | + | chr5.2:81472069-81472088 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | + | chr5.2:81471920-81471939 | None:intergenic | 35.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | - | chr5.2:81471128-81471147 | MS.gene81244:intron | 35.0% | |
| TCACAAAGCCTATCTTTGTT+TGG | + | chr5.2:81472982-81473001 | None:intergenic | 35.0% | |
| TTACATAATGTGGTTGGAGT+GGG | - | chr5.2:81472706-81472725 | MS.gene81244:intron | 35.0% | |
| TTTACATAATGTGGTTGGAG+TGG | - | chr5.2:81472705-81472724 | MS.gene81244:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | - | chr5.2:81471628-81471647 | MS.gene81244:intron | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | + | chr5.2:81473036-81473055 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | + | chr5.2:81473046-81473065 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | + | chr5.2:81473045-81473064 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | + | chr5.2:81472926-81472945 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | + | chr5.2:81472970-81472989 | None:intergenic | 35.0% |
| ! | TTGTCAAATTGCTGTTATCG+CGG | - | chr5.2:81472358-81472377 | MS.gene81244:CDS | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | + | chr5.2:81472964-81472983 | None:intergenic | 35.0% |
| !! | TTTTGTTTGTGAACAGGACA+AGG | - | chr5.2:81471303-81471322 | MS.gene81244:intron | 35.0% |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | + | chr5.2:81472912-81472931 | None:intergenic | 35.0% |
| ACAAAACCCCCAATATAGGA+GGG | + | chr5.2:81472766-81472785 | None:intergenic | 40.0% | |
| ACATACTACATTGAGAAGGC+AGG | + | chr5.2:81472502-81472521 | None:intergenic | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | - | chr5.2:81471131-81471150 | MS.gene81244:intron | 40.0% | |
| GGATAGGGGAAATTAATCGA+AGG | + | chr5.2:81472949-81472968 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | - | chr5.2:81472663-81472682 | MS.gene81244:intron | 40.0% | |
| TACAAAACCCCCAATATAGG+AGG | + | chr5.2:81472767-81472786 | None:intergenic | 40.0% | |
| TACATAATGTGGTTGGAGTG+GGG | - | chr5.2:81472707-81472726 | MS.gene81244:intron | 40.0% | |
| TCCTACAAAACCCCCAATAT+AGG | + | chr5.2:81472770-81472789 | None:intergenic | 40.0% | |
| TCTCCGTATTTCAATGAGTC+TGG | - | chr5.2:81473055-81473074 | MS.gene81244:intron | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | + | chr5.2:81471876-81471895 | None:intergenic | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | - | chr5.2:81473064-81473083 | MS.gene81244:intron | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | + | chr5.2:81472963-81472982 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | + | chr5.2:81472965-81472984 | None:intergenic | 40.0% |
| ! | TATGGATGGGTTTGATTGGA+GGG | + | chr5.2:81473032-81473051 | None:intergenic | 40.0% |
| !! | TCCTATATTGGGGGTTTTGT+AGG | - | chr5.2:81472766-81472785 | MS.gene81244:intron | 40.0% |
| !! | TTTTAAAGGATGATGCCCCA+AGG | - | chr5.2:81473175-81473194 | MS.gene81244:intron | 40.0% |
| AACAGGACAAGGCAATCAAG+AGG | - | chr5.2:81471314-81471333 | MS.gene81244:intron | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | - | chr5.2:81471146-81471165 | MS.gene81244:intron | 45.0% | |
| ACATAATGTGGTTGGAGTGG+GGG | - | chr5.2:81472708-81472727 | MS.gene81244:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | - | chr5.2:81471363-81471382 | MS.gene81244:intron | 45.0% | |
| CAAAACCCCCAATATAGGAG+GGG | + | chr5.2:81472765-81472784 | None:intergenic | 45.0% | |
| TAAACGACACAGCAGTGCTA+AGG | + | chr5.2:81472238-81472257 | None:intergenic | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | - | chr5.2:81471185-81471204 | MS.gene81244:intron | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | + | chr5.2:81473031-81473050 | None:intergenic | 45.0% |
| ! | GAGTTAGATCTCGCACTGAT+AGG | - | chr5.2:81471934-81471953 | MS.gene81244:intron | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | + | chr5.2:81473033-81473052 | None:intergenic | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | - | chr5.2:81471937-81471956 | MS.gene81244:intron | 45.0% |
| AGGGGAGCAGGAATTGAGTA+GGG | + | chr5.2:81472747-81472766 | None:intergenic | 50.0% | |
| ATGGGTTTGATTGGAGGGGA+TGG | + | chr5.2:81473027-81473046 | None:intergenic | 50.0% | |
| CATAATGTGGTTGGAGTGGG+GGG | - | chr5.2:81472709-81472728 | MS.gene81244:intron | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | - | chr5.2:81471202-81471221 | MS.gene81244:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | + | chr5.2:81472743-81472762 | None:intergenic | 50.0% | |
| GGGACAGCATTTACCACAGT+TGG | + | chr5.2:81471201-81471220 | None:intergenic | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | - | chr5.2:81472755-81472774 | MS.gene81244:intron | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | - | chr5.2:81472754-81472773 | MS.gene81244:intron | 50.0% | |
| ! | GGCCACGACCATGTTTGTTA+CGG | + | chr5.2:81471157-81471176 | None:intergenic | 50.0% |
| !! | GGGGTTTTGTAGGAGAGCAA+CGG | - | chr5.2:81472776-81472795 | MS.gene81244:intron | 50.0% |
| ACAGCGTTTCATCAGGCGCA+GGG | - | chr5.2:81471974-81471993 | MS.gene81244:intron | 55.0% | |
| ACCCTCCACAGCGTTTCATC+AGG | - | chr5.2:81471967-81471986 | MS.gene81244:intron | 55.0% | |
| CCTGCTCCCCTCCTATATTG+GGG | - | chr5.2:81472756-81472775 | MS.gene81244:intron | 55.0% | |
| CTGCTCCCCTCCTATATTGG+GGG | - | chr5.2:81472757-81472776 | MS.gene81244:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | + | chr5.2:81472748-81472767 | None:intergenic | 55.0% | |
| GCCTGATGAAACGCTGTGGA+GGG | + | chr5.2:81471971-81471990 | None:intergenic | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | - | chr5.2:81471152-81471171 | MS.gene81244:intron | 55.0% | |
| AAGGATGATGCCCCAAGGCC+TGG | - | chr5.2:81473180-81473199 | MS.gene81244:intron | 60.0% | |
| CACAGCGTTTCATCAGGCGC+AGG | - | chr5.2:81471973-81471992 | MS.gene81244:intron | 60.0% | |
| CCCCAATATAGGAGGGGAGC+AGG | + | chr5.2:81472759-81472778 | None:intergenic | 60.0% | |
| CGCCTGATGAAACGCTGTGG+AGG | + | chr5.2:81471972-81471991 | None:intergenic | 60.0% | |
| CTGCGCCTGATGAAACGCTG+TGG | + | chr5.2:81471975-81471994 | None:intergenic | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | + | chr5.2:81473193-81473212 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | + | chr5.2:81473194-81473213 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | + | chr5.2:81473227-81473246 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | + | chr5.2:81473238-81473257 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | + | chr5.2:81473195-81473214 | None:intergenic | 65.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | + | chr5.2:81473228-81473247 | None:intergenic | 70.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | + | chr5.2:81473201-81473220 | None:intergenic | 70.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | + | chr5.2:81473222-81473241 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | - | chr5.2:81473219-81473238 | MS.gene81244:intron | 75.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | - | chr5.2:81473189-81473208 | MS.gene81244:intron | 75.0% | |
| GCGCCTCGCCCTGCTGTAGC+CGG | - | chr5.2:81473216-81473235 | MS.gene81244:intron | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | + | chr5.2:81473210-81473229 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 81471038 | 81473260 | 81471038 | ID=MS.gene81244 |
| chr5.2 | mRNA | 81471038 | 81473260 | 81471038 | ID=MS.gene81244.t1;Parent=MS.gene81244 |
| chr5.2 | exon | 81473258 | 81473260 | 81473258 | ID=MS.gene81244.t1.exon1;Parent=MS.gene81244.t1 |
| chr5.2 | CDS | 81473258 | 81473260 | 81473258 | ID=cds.MS.gene81244.t1;Parent=MS.gene81244.t1 |
| chr5.2 | exon | 81473075 | 81473167 | 81473075 | ID=MS.gene81244.t1.exon2;Parent=MS.gene81244.t1 |
| chr5.2 | CDS | 81473075 | 81473167 | 81473075 | ID=cds.MS.gene81244.t1;Parent=MS.gene81244.t1 |
| chr5.2 | exon | 81472895 | 81472979 | 81472895 | ID=MS.gene81244.t1.exon3;Parent=MS.gene81244.t1 |
| chr5.2 | CDS | 81472895 | 81472979 | 81472895 | ID=cds.MS.gene81244.t1;Parent=MS.gene81244.t1 |
| chr5.2 | exon | 81472303 | 81472436 | 81472303 | ID=MS.gene81244.t1.exon4;Parent=MS.gene81244.t1 |
| chr5.2 | CDS | 81472303 | 81472436 | 81472303 | ID=cds.MS.gene81244.t1;Parent=MS.gene81244.t1 |
| chr5.2 | exon | 81471038 | 81471115 | 81471038 | ID=MS.gene81244.t1.exon5;Parent=MS.gene81244.t1 |
| chr5.2 | CDS | 81471038 | 81471115 | 81471038 | ID=cds.MS.gene81244.t1;Parent=MS.gene81244.t1 |
| Gene Sequence |
| Protein sequence |
