Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38222.t1 | XP_003617941.2 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38222.t1 | Q9LYK9 | 83.5 | 127 | 19 | 1 | 1 | 127 | 1 | 125 | 1.5e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38222.t1 | I3S2G2 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 7.7e-68 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene38222 | 0.825811 | 3.82E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene38222 | 0.864334 | 1.31E-64 | -1.69E-46 |
| MS.gene050252 | MS.gene38222 | 0.894772 | 1.80E-75 | -1.69E-46 |
| MS.gene050791 | MS.gene38222 | 0.875363 | 3.27E-68 | -1.69E-46 |
| MS.gene051904 | MS.gene38222 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene051963 | MS.gene38222 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene051984 | MS.gene38222 | 0.804504 | 2.09E-49 | -1.69E-46 |
| MS.gene052412 | MS.gene38222 | 0.837531 | 4.92E-57 | -1.69E-46 |
| MS.gene052664 | MS.gene38222 | 0.823269 | 1.52E-53 | -1.69E-46 |
| MS.gene053224 | MS.gene38222 | 0.85634 | 3.44E-62 | -1.69E-46 |
| MS.gene054624 | MS.gene38222 | 0.815016 | 1.15E-51 | -1.69E-46 |
| MS.gene054733 | MS.gene38222 | 0.801648 | 8.15E-49 | -1.69E-46 |
| MS.gene057092 | MS.gene38222 | 0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene057235 | MS.gene38222 | 0.807974 | 3.89E-50 | -1.69E-46 |
| MS.gene057272 | MS.gene38222 | 0.879301 | 1.39E-69 | -1.69E-46 |
| MS.gene057643 | MS.gene38222 | 0.855511 | 6.01E-62 | -1.69E-46 |
| MS.gene058994 | MS.gene38222 | 0.844359 | 7.94E-59 | -1.69E-46 |
| MS.gene059340 | MS.gene38222 | 0.854097 | 1.54E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene38222 | 0.825082 | 5.69E-54 | -1.69E-46 |
| MS.gene060856 | MS.gene38222 | 0.812382 | 4.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38222 | MS.gene38035 | PPI |
| MS.gene38222 | MS.gene51868 | PPI |
| MS.gene38222 | MS.gene59772 | PPI |
| MS.gene38222 | MS.gene013415 | PPI |
| MS.gene38222 | MS.gene020871 | PPI |
| MS.gene38222 | MS.gene067809 | PPI |
| MS.gene38222 | MS.gene83159 | PPI |
| MS.gene38222 | MS.gene81244 | PPI |
| MS.gene38222 | MS.gene049387 | PPI |
| MS.gene38222 | MS.gene08205 | PPI |
| MS.gene38222 | MS.gene016408 | PPI |
| MS.gene38222 | MS.gene016407 | PPI |
| MS.gene38222 | MS.gene059340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38222.t1 | MTR_5g097200 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.03e-92 | 263 |
| MS.gene38222.t1 | MTR_3g094220 | 99.138 | 116 | 1 | 0 | 1 | 116 | 1 | 116 | 9.15e-82 | 236 |
| MS.gene38222.t1 | MTR_5g097200 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 5.65e-74 | 216 |
| MS.gene38222.t1 | MTR_3g094220 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.26e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38222.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 1.51e-68 | 202 |
| MS.gene38222.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.17e-68 | 202 |
| MS.gene38222.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.19e-68 | 202 |
Find 35 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5.3:+78495519 | None:intergenic |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5.3:-78497384 | MS.gene38222:CDS |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5.3:+78495518 | None:intergenic |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5.3:-78497347 | MS.gene38222:CDS |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5.3:+78495512 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5.3:-78497582 | MS.gene38222:CDS |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5.3:-78495521 | MS.gene38222:CDS |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5.3:+78495485 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5.3:-78495494 | MS.gene38222:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5.3:-78495530 | MS.gene38222:CDS |
| ACCCTCCACAGCGTTTCATC+AGG | 0.473802 | 5.3:-78496743 | MS.gene38222:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5.3:+78497512 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5.3:+78497556 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5.3:+78495503 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5.3:-78496776 | MS.gene38222:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5.3:+78495491 | None:intergenic |
| CGCCTGATGAAACGCTGTGG+AGG | 0.504436 | 5.3:+78496741 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5.3:+78496793 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5.3:+78495520 | None:intergenic |
| CACAGCGTTTCATCAGGCGC+AGG | 0.535977 | 5.3:-78496737 | MS.gene38222:CDS |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5.3:+78496837 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5.3:-78497525 | MS.gene38222:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5.3:-78495491 | MS.gene38222:CDS |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5.3:-78496773 | MS.gene38222:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5.3:-78497579 | MS.gene38222:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5.3:-78497558 | MS.gene38222:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5.3:+78495475 | None:intergenic |
| GCCTGATGAAACGCTGTGGA+GGG | 0.592960 | 5.3:+78496742 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5.3:-78497564 | MS.gene38222:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5.3:-78497508 | MS.gene38222:intron |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5.3:+78495486 | None:intergenic |
| ACAGCGTTTCATCAGGCGCA+GGG | 0.646586 | 5.3:-78496736 | MS.gene38222:intron |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5.3:+78497535 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5.3:-78497396 | MS.gene38222:intron |
| CTGCGCCTGATGAAACGCTG+TGG | 0.679468 | 5.3:+78496738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTGTTTTTTTTTTTTTT+TGG | - | chr5.3:78496254-78496273 | MS.gene38222:intron | 10.0% |
| !!! | TTCTGTTTTTTTTTTTTTTT+GGG | - | chr5.3:78496255-78496274 | MS.gene38222:intron | 10.0% |
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | - | chr5.3:78497595-78497614 | MS.gene38222:intron | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | + | chr5.3:78495839-78495858 | None:intergenic | 15.0% |
| !! | CAGCAAAATATATAATTATA+AGG | + | chr5.3:78497550-78497569 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | + | chr5.3:78497034-78497053 | None:intergenic | 15.0% |
| !! | AAAAAAAACAGAATCAGTTA+AGG | + | chr5.3:78496248-78496267 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | - | chr5.3:78496193-78496212 | MS.gene38222:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | - | chr5.3:78496194-78496213 | MS.gene38222:intron | 20.0% |
| !! | TCTTAAGTTAATAAAACACA+TGG | - | chr5.3:78496559-78496578 | MS.gene38222:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | + | chr5.3:78496191-78496210 | None:intergenic | 20.0% |
| !!! | AAGGATTTGAAATTTATGTA+GGG | + | chr5.3:78496190-78496209 | None:intergenic | 20.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | - | chr5.3:78495933-78495952 | MS.gene38222:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | - | chr5.3:78495934-78495953 | MS.gene38222:intron | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | - | chr5.3:78497561-78497580 | MS.gene38222:CDS | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | + | chr5.3:78497325-78497344 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTTTTGGGT+TGG | - | chr5.3:78496259-78496278 | MS.gene38222:intron | 20.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | + | chr5.3:78496452-78496471 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | - | chr5.3:78497279-78497298 | MS.gene38222:intron | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | + | chr5.3:78496838-78496857 | None:intergenic | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | + | chr5.3:78496773-78496792 | None:intergenic | 25.0% |
| ! | GATTTAGATTTGTCATATAG+TGG | - | chr5.3:78496692-78496711 | MS.gene38222:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | + | chr5.3:78495929-78495948 | None:intergenic | 25.0% |
| ! | TCAATCTATAACAGAAAGTA+AGG | + | chr5.3:78497073-78497092 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | + | chr5.3:78495930-78495949 | None:intergenic | 25.0% |
| !! | ACTTTTGATACTTGAAACTT+TGG | - | chr5.3:78496633-78496652 | MS.gene38222:intron | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | - | chr5.3:78496462-78496481 | MS.gene38222:intron | 25.0% |
| !!! | TTAGTTTGCTTTACATAATG+TGG | - | chr5.3:78497130-78497149 | MS.gene38222:intron | 25.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | - | chr5.3:78495731-78495750 | MS.gene38222:intron | 25.0% |
| AATCCAGACTCATTGAAATA+CGG | + | chr5.3:78497495-78497514 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | + | chr5.3:78495656-78495675 | None:intergenic | 30.0% | |
| ACGGTTTATCAGATCTTATA+TGG | - | chr5.3:78497229-78497248 | MS.gene38222:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | + | chr5.3:78495655-78495674 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | + | chr5.3:78497484-78497503 | None:intergenic | 30.0% | |
| ATTGCCTATGAAATTGTGTA+TGG | - | chr5.3:78496496-78496515 | MS.gene38222:intron | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | + | chr5.3:78496786-78496805 | None:intergenic | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | - | chr5.3:78497348-78497367 | MS.gene38222:CDS | 30.0% | |
| GCATAACAAAGACATAAGAA+TGG | + | chr5.3:78496595-78496614 | None:intergenic | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | + | chr5.3:78497440-78497459 | None:intergenic | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | + | chr5.3:78496870-78496889 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | - | chr5.3:78497495-78497514 | MS.gene38222:intron | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | - | chr5.3:78496816-78496835 | MS.gene38222:CDS | 30.0% | |
| TCTCTGATCTATTCATTTCT+CGG | - | chr5.3:78495508-78495527 | MS.gene38222:CDS | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | - | chr5.3:78496967-78496986 | MS.gene38222:intron | 30.0% | |
| TTCATAAGCTCAATCTGAAT+GGG | - | chr5.3:78496164-78496183 | MS.gene38222:intron | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | - | chr5.3:78496029-78496048 | MS.gene38222:intron | 30.0% | |
| TTTCATAAGCTCAATCTGAA+TGG | - | chr5.3:78496163-78496182 | MS.gene38222:intron | 30.0% | |
| TTTGCTTTACATAATGTGGT+TGG | - | chr5.3:78497134-78497153 | MS.gene38222:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | - | chr5.3:78497405-78497424 | MS.gene38222:intron | 30.0% | |
| ! | AGATTTCTAGGAACAAGTTT+AGG | + | chr5.3:78497022-78497041 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | + | chr5.3:78497009-78497028 | None:intergenic | 30.0% |
| ! | GATTTGATAGATGGAGTATT+AGG | + | chr5.3:78497000-78497019 | None:intergenic | 30.0% |
| AATCACGATAAACCCTACAA+AGG | + | chr5.3:78496209-78496228 | None:intergenic | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | + | chr5.3:78495942-78495961 | None:intergenic | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | + | chr5.3:78495612-78495631 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | - | chr5.3:78495943-78495962 | MS.gene38222:intron | 35.0% | |
| ATAGGGGAAATTAATCGAAG+GGG | + | chr5.3:78497381-78497400 | None:intergenic | 35.0% | |
| CAATCAAGAGGTTTCTTGTT+AGG | - | chr5.3:78495760-78495779 | MS.gene38222:intron | 35.0% | |
| GATAGGGGAAATTAATCGAA+GGG | + | chr5.3:78497382-78497401 | None:intergenic | 35.0% | |
| GATGACATACTACATTGAGA+AGG | + | chr5.3:78496940-78496959 | None:intergenic | 35.0% | |
| GTCTCCATACACAATTTCAT+AGG | + | chr5.3:78496503-78496522 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | + | chr5.3:78496354-78496373 | None:intergenic | 35.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | - | chr5.3:78495562-78495581 | MS.gene38222:intron | 35.0% | |
| TCACAAAGCCTATCTTTGTT+TGG | + | chr5.3:78497416-78497435 | None:intergenic | 35.0% | |
| TTACATAATGTGGTTGGAGT+GGG | - | chr5.3:78497140-78497159 | MS.gene38222:intron | 35.0% | |
| TTTACATAATGTGGTTGGAG+TGG | - | chr5.3:78497139-78497158 | MS.gene38222:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | - | chr5.3:78496062-78496081 | MS.gene38222:intron | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | + | chr5.3:78497470-78497489 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | + | chr5.3:78497480-78497499 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | + | chr5.3:78497479-78497498 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | + | chr5.3:78497360-78497379 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | + | chr5.3:78497404-78497423 | None:intergenic | 35.0% |
| ! | TTGTCAAATTGCTGTTATCG+CGG | - | chr5.3:78496792-78496811 | MS.gene38222:CDS | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | + | chr5.3:78497398-78497417 | None:intergenic | 35.0% |
| !! | TTTTGTTTGTGAACAGGACA+AGG | - | chr5.3:78495737-78495756 | MS.gene38222:intron | 35.0% |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | + | chr5.3:78497346-78497365 | None:intergenic | 35.0% |
| ACAAAACCCCCAATATAGGA+GGG | + | chr5.3:78497200-78497219 | None:intergenic | 40.0% | |
| ACATACTACATTGAGAAGGC+AGG | + | chr5.3:78496936-78496955 | None:intergenic | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | - | chr5.3:78495565-78495584 | MS.gene38222:intron | 40.0% | |
| GGATAGGGGAAATTAATCGA+AGG | + | chr5.3:78497383-78497402 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | - | chr5.3:78497097-78497116 | MS.gene38222:intron | 40.0% | |
| TACAAAACCCCCAATATAGG+AGG | + | chr5.3:78497201-78497220 | None:intergenic | 40.0% | |
| TACATAATGTGGTTGGAGTG+GGG | - | chr5.3:78497141-78497160 | MS.gene38222:intron | 40.0% | |
| TCCTACAAAACCCCCAATAT+AGG | + | chr5.3:78497204-78497223 | None:intergenic | 40.0% | |
| TCTCCGTATTTCAATGAGTC+TGG | - | chr5.3:78497489-78497508 | MS.gene38222:intron | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | + | chr5.3:78496310-78496329 | None:intergenic | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | - | chr5.3:78497498-78497517 | MS.gene38222:intron | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | + | chr5.3:78497397-78497416 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | + | chr5.3:78497399-78497418 | None:intergenic | 40.0% |
| ! | TATGGATGGGTTTGATTGGA+GGG | + | chr5.3:78497466-78497485 | None:intergenic | 40.0% |
| !! | TCCTATATTGGGGGTTTTGT+AGG | - | chr5.3:78497200-78497219 | MS.gene38222:intron | 40.0% |
| !! | TTTTAAAGGATGATGCCCCA+AGG | - | chr5.3:78497609-78497628 | MS.gene38222:intron | 40.0% |
| AACAGGACAAGGCAATCAAG+AGG | - | chr5.3:78495748-78495767 | MS.gene38222:intron | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | - | chr5.3:78495580-78495599 | MS.gene38222:intron | 45.0% | |
| ACATAATGTGGTTGGAGTGG+GGG | - | chr5.3:78497142-78497161 | MS.gene38222:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | - | chr5.3:78495797-78495816 | MS.gene38222:intron | 45.0% | |
| CAAAACCCCCAATATAGGAG+GGG | + | chr5.3:78497199-78497218 | None:intergenic | 45.0% | |
| TAAACGACACAGCAGTGCTA+AGG | + | chr5.3:78496672-78496691 | None:intergenic | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | - | chr5.3:78495619-78495638 | MS.gene38222:intron | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | + | chr5.3:78497465-78497484 | None:intergenic | 45.0% |
| ! | GAGTTAGATCTCGCACTGAT+AGG | - | chr5.3:78496368-78496387 | MS.gene38222:intron | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | + | chr5.3:78497467-78497486 | None:intergenic | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | - | chr5.3:78496371-78496390 | MS.gene38222:intron | 45.0% |
| AGGGGAGCAGGAATTGAGTA+GGG | + | chr5.3:78497181-78497200 | None:intergenic | 50.0% | |
| ATGGGTTTGATTGGAGGGGA+TGG | + | chr5.3:78497461-78497480 | None:intergenic | 50.0% | |
| CATAATGTGGTTGGAGTGGG+GGG | - | chr5.3:78497143-78497162 | MS.gene38222:intron | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | - | chr5.3:78495636-78495655 | MS.gene38222:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | + | chr5.3:78497177-78497196 | None:intergenic | 50.0% | |
| GGGACAGCATTTACCACAGT+TGG | + | chr5.3:78495635-78495654 | None:intergenic | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | - | chr5.3:78497189-78497208 | MS.gene38222:intron | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | - | chr5.3:78497188-78497207 | MS.gene38222:intron | 50.0% | |
| ! | GGCCACGACCATGTTTGTTA+CGG | + | chr5.3:78495591-78495610 | None:intergenic | 50.0% |
| !! | GGGGTTTTGTAGGAGAGCAA+CGG | - | chr5.3:78497210-78497229 | MS.gene38222:intron | 50.0% |
| ACAGCGTTTCATCAGGCGCA+GGG | - | chr5.3:78496408-78496427 | MS.gene38222:intron | 55.0% | |
| ACCCTCCACAGCGTTTCATC+AGG | - | chr5.3:78496401-78496420 | MS.gene38222:intron | 55.0% | |
| CCTGCTCCCCTCCTATATTG+GGG | - | chr5.3:78497190-78497209 | MS.gene38222:intron | 55.0% | |
| CTGCTCCCCTCCTATATTGG+GGG | - | chr5.3:78497191-78497210 | MS.gene38222:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | + | chr5.3:78497182-78497201 | None:intergenic | 55.0% | |
| GCCTGATGAAACGCTGTGGA+GGG | + | chr5.3:78496405-78496424 | None:intergenic | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | - | chr5.3:78495586-78495605 | MS.gene38222:intron | 55.0% | |
| AAGGATGATGCCCCAAGGCC+TGG | - | chr5.3:78497614-78497633 | MS.gene38222:intron | 60.0% | |
| CACAGCGTTTCATCAGGCGC+AGG | - | chr5.3:78496407-78496426 | MS.gene38222:intron | 60.0% | |
| CCCCAATATAGGAGGGGAGC+AGG | + | chr5.3:78497193-78497212 | None:intergenic | 60.0% | |
| CGCCTGATGAAACGCTGTGG+AGG | + | chr5.3:78496406-78496425 | None:intergenic | 60.0% | |
| CTGCGCCTGATGAAACGCTG+TGG | + | chr5.3:78496409-78496428 | None:intergenic | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | + | chr5.3:78497627-78497646 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | + | chr5.3:78497628-78497647 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | + | chr5.3:78497661-78497680 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | + | chr5.3:78497672-78497691 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | + | chr5.3:78497629-78497648 | None:intergenic | 65.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | + | chr5.3:78497662-78497681 | None:intergenic | 70.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | + | chr5.3:78497635-78497654 | None:intergenic | 70.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | + | chr5.3:78497656-78497675 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | - | chr5.3:78497653-78497672 | MS.gene38222:intron | 75.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | - | chr5.3:78497623-78497642 | MS.gene38222:intron | 75.0% | |
| GCGCCTCGCCCTGCTGTAGC+CGG | - | chr5.3:78497650-78497669 | MS.gene38222:intron | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | + | chr5.3:78497644-78497663 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 78495472 | 78497694 | 78495472 | ID=MS.gene38222 |
| chr5.3 | mRNA | 78495472 | 78497694 | 78495472 | ID=MS.gene38222.t1;Parent=MS.gene38222 |
| chr5.3 | exon | 78497692 | 78497694 | 78497692 | ID=MS.gene38222.t1.exon1;Parent=MS.gene38222.t1 |
| chr5.3 | CDS | 78497692 | 78497694 | 78497692 | ID=cds.MS.gene38222.t1;Parent=MS.gene38222.t1 |
| chr5.3 | exon | 78497509 | 78497601 | 78497509 | ID=MS.gene38222.t1.exon2;Parent=MS.gene38222.t1 |
| chr5.3 | CDS | 78497509 | 78497601 | 78497509 | ID=cds.MS.gene38222.t1;Parent=MS.gene38222.t1 |
| chr5.3 | exon | 78497329 | 78497413 | 78497329 | ID=MS.gene38222.t1.exon3;Parent=MS.gene38222.t1 |
| chr5.3 | CDS | 78497329 | 78497413 | 78497329 | ID=cds.MS.gene38222.t1;Parent=MS.gene38222.t1 |
| chr5.3 | exon | 78496737 | 78496870 | 78496737 | ID=MS.gene38222.t1.exon4;Parent=MS.gene38222.t1 |
| chr5.3 | CDS | 78496737 | 78496870 | 78496737 | ID=cds.MS.gene38222.t1;Parent=MS.gene38222.t1 |
| chr5.3 | exon | 78495472 | 78495549 | 78495472 | ID=MS.gene38222.t1.exon5;Parent=MS.gene38222.t1 |
| chr5.3 | CDS | 78495472 | 78495549 | 78495472 | ID=cds.MS.gene38222.t1;Parent=MS.gene38222.t1 |
| Gene Sequence |
| Protein sequence |
