Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049387.t1 | XP_013461530.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-60 | 239.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049387.t1 | P49206 | 83.5 | 115 | 19 | 0 | 1 | 115 | 1 | 115 | 7.8e-51 | 201.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049387.t1 | A0A072VBJ7 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-60 | 239.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene049387 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene050134 | 0.82897 | 6.69E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene051925 | 0.82697 | 2.03E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene052664 | 0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene049387 | MS.gene052666 | 0.846914 | 1.61E-59 | -1.69E-46 |
| MS.gene049387 | MS.gene053224 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene057272 | 0.836893 | 7.17E-57 | -1.69E-46 |
| MS.gene049387 | MS.gene057321 | 0.824176 | 9.30E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene057641 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene049387 | MS.gene057643 | 0.857801 | 1.27E-62 | -1.69E-46 |
| MS.gene049387 | MS.gene059340 | 0.865149 | 7.28E-65 | -1.69E-46 |
| MS.gene049387 | MS.gene060483 | 0.852767 | 3.72E-61 | -1.69E-46 |
| MS.gene049387 | MS.gene06169 | 0.844006 | 9.87E-59 | -1.69E-46 |
| MS.gene049387 | MS.gene063717 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene049387 | MS.gene06433 | 0.836116 | 1.13E-56 | -1.69E-46 |
| MS.gene049387 | MS.gene06617 | 0.87278 | 2.45E-67 | -1.69E-46 |
| MS.gene049387 | MS.gene066583 | 0.802311 | 5.96E-49 | -1.69E-46 |
| MS.gene049387 | MS.gene066811 | 0.850293 | 1.86E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene067331 | 0.862175 | 6.10E-64 | -1.69E-46 |
| MS.gene049387 | MS.gene06803 | 0.830846 | 2.33E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene06833 | 0.873153 | 1.83E-67 | -1.69E-46 |
| MS.gene049387 | MS.gene06999 | 0.830762 | 2.45E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene072093 | 0.809506 | 1.83E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene073358 | 0.819773 | 9.74E-53 | -1.69E-46 |
| MS.gene049387 | MS.gene074400 | 0.84368 | 1.21E-58 | -1.69E-46 |
| MS.gene049387 | MS.gene08521 | 0.849535 | 3.04E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene08869 | 0.848428 | 6.17E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene08870 | 0.81321 | 2.87E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene08871 | 0.817405 | 3.35E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene09038 | 0.80792 | 3.99E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene09204 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene24232 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene049387 | MS.gene25236 | 0.852547 | 4.30E-61 | -1.69E-46 |
| MS.gene049387 | MS.gene25240 | 0.823024 | 1.73E-53 | -1.69E-46 |
| MS.gene049387 | MS.gene25639 | 0.851962 | 6.30E-61 | -1.69E-46 |
| MS.gene049387 | MS.gene25649 | 0.825555 | 4.40E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene25903 | 0.855487 | 6.10E-62 | -1.69E-46 |
| MS.gene049387 | MS.gene26005 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene049387 | MS.gene26343 | 0.870212 | 1.73E-66 | -1.69E-46 |
| MS.gene049387 | MS.gene27003 | 0.832038 | 1.19E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene27265 | 0.829801 | 4.20E-55 | -1.69E-46 |
| MS.gene049387 | MS.gene28147 | 0.825286 | 5.09E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene30990 | 0.844535 | 7.12E-59 | -1.69E-46 |
| MS.gene049387 | MS.gene38035 | 0.876863 | 9.95E-69 | -1.69E-46 |
| MS.gene049387 | MS.gene38222 | 0.825811 | 3.82E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene43038 | 0.851001 | 1.18E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene44297 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene50640 | 0.858497 | 7.91E-63 | -1.69E-46 |
| MS.gene049387 | MS.gene50756 | 0.861421 | 1.04E-63 | -1.69E-46 |
| MS.gene049387 | MS.gene50758 | 0.812503 | 4.10E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene55619 | 0.849695 | 2.74E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene55890 | 0.888658 | 4.86E-73 | -1.69E-46 |
| MS.gene049387 | MS.gene58173 | 0.860388 | 2.14E-63 | -1.69E-46 |
| MS.gene049387 | MS.gene59228 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene049387 | MS.gene62561 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene62620 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene70316 | 0.866369 | 3.00E-65 | -1.69E-46 |
| MS.gene049387 | MS.gene70579 | 0.850377 | 1.77E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene70808 | 0.847965 | 8.28E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene72382 | 0.806789 | 6.93E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene79721 | 0.837769 | 4.27E-57 | -1.69E-46 |
| MS.gene049387 | MS.gene80889 | 0.818364 | 2.04E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene82009 | 0.820791 | 5.69E-53 | -1.69E-46 |
| MS.gene049387 | MS.gene83062 | 0.826721 | 2.32E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene88918 | 0.84162 | 4.26E-58 | -1.69E-46 |
| MS.gene049387 | MS.gene90945 | 0.806676 | 7.33E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene92142 | 0.826308 | 2.91E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene96225 | 0.822454 | 2.35E-53 | -1.69E-46 |
| MS.gene049387 | MS.gene96825 | 0.809316 | 2.01E-50 | -1.69E-46 |
| MS.gene049387 | MS.gene98171 | 0.815115 | 1.09E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013415 | MS.gene049387 | PPI |
| MS.gene049387 | MS.gene067809 | PPI |
| MS.gene049387 | MS.gene83159 | PPI |
| MS.gene049387 | MS.gene020871 | PPI |
| MS.gene38035 | MS.gene049387 | PPI |
| MS.gene08205 | MS.gene049387 | PPI |
| MS.gene049387 | MS.gene016407 | PPI |
| MS.gene059340 | MS.gene049387 | PPI |
| MS.gene59772 | MS.gene049387 | PPI |
| MS.gene049387 | MS.gene81244 | PPI |
| MS.gene049387 | MS.gene016408 | PPI |
| MS.gene51868 | MS.gene049387 | PPI |
| MS.gene38222 | MS.gene049387 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049387.t1 | MTR_3g094220 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10e-92 | 263 |
| MS.gene049387.t1 | MTR_5g097200 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 2.48e-87 | 250 |
| MS.gene049387.t1 | MTR_3g094220 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 2.65e-74 | 217 |
| MS.gene049387.t1 | MTR_5g097200 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.87e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049387.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.73e-68 | 202 |
| MS.gene049387.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 3.96e-68 | 201 |
| MS.gene049387.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 4.37e-68 | 201 |
Find 45 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCGGGCTGGCCGGGCC+TGG | 0.190447 | 3.1:+75354979 | None:intergenic |
| TGACCGGGCTGGCCGGGCCT+GGG | 0.257962 | 3.1:+75354980 | None:intergenic |
| AGCAGGGCGTGGGGCTTGAC+CGG | 0.292902 | 3.1:+75354964 | None:intergenic |
| TGGGGCTTGACCGGGCTGGC+CGG | 0.319724 | 3.1:+75354973 | None:intergenic |
| AGCTGCAGTTAGGGATGTTC+AGG | 0.334420 | 3.1:-75356512 | MS.gene049387:CDS |
| GGGGCTTGACCGGGCTGGCC+GGG | 0.376921 | 3.1:+75354974 | None:intergenic |
| GCTCCTGGTCCAGCAGGGCG+TGG | 0.386043 | 3.1:+75354953 | None:intergenic |
| GGTCAAGCCCCACGCCCTGC+TGG | 0.391542 | 3.1:-75354962 | MS.gene049387:CDS |
| CTCCTGGTCCAGCAGGGCGT+GGG | 0.393652 | 3.1:+75354954 | None:intergenic |
| GGAGGAGCTCCTGGTCCAGC+AGG | 0.410657 | 3.1:+75354947 | None:intergenic |
| GCACGGGCTGGAGGAGCTCC+TGG | 0.413579 | 3.1:+75354938 | None:intergenic |
| CAGACGTTCAAGCGTAGAAA+TGG | 0.419772 | 3.1:-75356744 | MS.gene049387:CDS |
| TTGTTGAACAAGCTGCAGTT+AGG | 0.422831 | 3.1:-75356522 | MS.gene049387:CDS |
| GCATCTTCACATAGAGCTTA+GGG | 0.429592 | 3.1:+75356365 | None:intergenic |
| GCACCCAGGCCCGGCCAGCC+CGG | 0.443884 | 3.1:-75354983 | MS.gene049387:CDS |
| TGCATCTTCACATAGAGCTT+AGG | 0.448152 | 3.1:+75356364 | None:intergenic |
| GCCCCACGCCCTGCTGGACC+AGG | 0.451018 | 3.1:-75354956 | MS.gene049387:CDS |
| GCAGGGCGTGGGGCTTGACC+GGG | 0.458801 | 3.1:+75354965 | None:intergenic |
| GGCGTGGGGCTTGACCGGGC+TGG | 0.467003 | 3.1:+75354969 | None:intergenic |
| TGTTGAACAAGCTGCAGTTA+GGG | 0.467003 | 3.1:-75356521 | MS.gene049387:CDS |
| AGCCTCCACAGCGTTTCATT+AGG | 0.474568 | 3.1:-75356270 | MS.gene049387:CDS |
| AAGGATGACGCACCCAGGCC+CGG | 0.480226 | 3.1:-75354992 | MS.gene049387:CDS |
| AGCTTCATCTAGGCACGGGC+TGG | 0.485726 | 3.1:+75354926 | None:intergenic |
| CTATCCACTCTCACGTTGTG+AGG | 0.500174 | 3.1:-75356324 | MS.gene049387:CDS |
| CACAGCGTTTCATTAGGCGC+AGG | 0.511553 | 3.1:-75356264 | MS.gene049387:CDS |
| TCCTGGTCCAGCAGGGCGTG+GGG | 0.514682 | 3.1:+75354955 | None:intergenic |
| GGGTCAGATCTCGCACTGAC+AGG | 0.523518 | 3.1:-75356303 | MS.gene049387:CDS |
| GGTCGTAACAAGCATGGCCG+TGG | 0.529078 | 3.1:-75356720 | MS.gene049387:CDS |
| TTCATCCGTTGCTCCAACTG+TGG | 0.535536 | 3.1:-75356687 | MS.gene049387:CDS |
| TATTAGCTTCATCTAGGCAC+GGG | 0.539162 | 3.1:+75354922 | None:intergenic |
| TTCATCTAGGCACGGGCTGG+AGG | 0.539272 | 3.1:+75354929 | None:intergenic |
| ATATTAGCTTCATCTAGGCA+CGG | 0.555634 | 3.1:+75354921 | None:intergenic |
| CGCCTAATGAAACGCTGTGG+AGG | 0.567724 | 3.1:+75356268 | None:intergenic |
| CTGTGGAAAATGCTGTCCTA+AGG | 0.573602 | 3.1:-75356670 | MS.gene049387:intron |
| ACGTTCAAGCGTAGAAATGG+AGG | 0.581703 | 3.1:-75356741 | MS.gene049387:CDS |
| GAGGAGCTCCTGGTCCAGCA+GGG | 0.594077 | 3.1:+75354948 | None:intergenic |
| ACAGCGTTTCATTAGGCGCA+GGG | 0.598137 | 3.1:-75356263 | MS.gene049387:intron |
| TGACCCTCACAACGTGAGAG+TGG | 0.612357 | 3.1:+75356320 | None:intergenic |
| TATCCACTCTCACGTTGTGA+GGG | 0.624539 | 3.1:-75356323 | MS.gene049387:CDS |
| GGATGAATTTGACATGGCCA+CGG | 0.627886 | 3.1:+75356703 | None:intergenic |
| AATGGAGGTCGTAACAAGCA+TGG | 0.634174 | 3.1:-75356726 | MS.gene049387:CDS |
| TCAGATCTCGCACTGACAGG+AGG | 0.634180 | 3.1:-75356300 | MS.gene049387:CDS |
| AGCAACGGATGAATTTGACA+TGG | 0.665067 | 3.1:+75356697 | None:intergenic |
| AACGTGAGAGTGGATAGCAC+AGG | 0.683104 | 3.1:+75356330 | None:intergenic |
| CTGCGCCTAATGAAACGCTG+TGG | 0.693414 | 3.1:+75356265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTATTAGATTATTTT+TGG | + | chr3.1:75355829-75355848 | None:intergenic | 10.0% |
| !!! | ATTTTTTTGTTTTGTTAAAT+AGG | - | chr3.1:75355190-75355209 | MS.gene049387:intron | 10.0% |
| !! | AATTATGCTATATATTTCAT+TGG | - | chr3.1:75356721-75356740 | MS.gene049387:CDS | 15.0% |
| !! | ATACAATTGTGATAAATTTA+GGG | + | chr3.1:75355669-75355688 | None:intergenic | 15.0% |
| !! | TCAAAATATGAAATCTAAAT+TGG | + | chr3.1:75356518-75356537 | None:intergenic | 15.0% |
| !! | TTTGAAGAAAAAAAAATAGT+TGG | + | chr3.1:75356490-75356509 | None:intergenic | 15.0% |
| !!! | GTTTATTTAATTCTTTTTGA+AGG | - | chr3.1:75356757-75356776 | MS.gene049387:intron | 15.0% |
| !! | AAAAAAAGATGAAATACCTT+AGG | + | chr3.1:75355117-75355136 | None:intergenic | 20.0% |
| !! | AAAACCAACAAAAGTAAATA+AGG | + | chr3.1:75355547-75355566 | None:intergenic | 20.0% |
| !! | AAACCAACAAAAGTAAATAA+GGG | + | chr3.1:75355546-75355565 | None:intergenic | 20.0% |
| !! | ACAATTGTATGTTTCTTTAT+TGG | - | chr3.1:75355679-75355698 | MS.gene049387:intron | 20.0% |
| !! | ATATAAACCTAAAGCATATT+AGG | + | chr3.1:75355944-75355963 | None:intergenic | 20.0% |
| !! | CAATTAACAAACAAATTTGA+TGG | + | chr3.1:75355001-75355020 | None:intergenic | 20.0% |
| !! | CATACAATTGTGATAAATTT+AGG | + | chr3.1:75355670-75355689 | None:intergenic | 20.0% |
| !! | TACAATTGTGATAAATTTAG+GGG | + | chr3.1:75355668-75355687 | None:intergenic | 20.0% |
| !!! | TTTATCTGTTTCTGTAAAAA+TGG | - | chr3.1:75355847-75355866 | MS.gene049387:intron | 20.0% |
| ! | AACAAAAGTAAATAAGGGAA+AGG | + | chr3.1:75355541-75355560 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAATAGTTGG+CGG | + | chr3.1:75356487-75356506 | None:intergenic | 25.0% |
| ! | GATAACTTGATTTAGACATT+TGG | - | chr3.1:75356300-75356319 | MS.gene049387:CDS | 25.0% |
| ! | TCTTTATTGGATTCGATATA+GGG | - | chr3.1:75355692-75355711 | MS.gene049387:intron | 25.0% |
| ! | TTCTTTAGCTATGAAATTGT+TGG | - | chr3.1:75356659-75356678 | MS.gene049387:intron | 25.0% |
| ! | TTCTTTATTGGATTCGATAT+AGG | - | chr3.1:75355691-75355710 | MS.gene049387:intron | 25.0% |
| !! | ATAAAACAAATGTGCTATTG+AGG | + | chr3.1:75356358-75356377 | None:intergenic | 25.0% |
| !! | ATATATCTTGTTACTTGAGT+GGG | - | chr3.1:75356560-75356579 | MS.gene049387:intron | 25.0% |
| !! | TTTCTTTTCATGTTGTCTTT+AGG | - | chr3.1:75356396-75356415 | MS.gene049387:intron | 25.0% |
| !!! | ATTTTGATTATCCTCTCTTT+TGG | - | chr3.1:75356531-75356550 | MS.gene049387:CDS | 25.0% |
| !!! | TTTCCCTTATTTACTTTTGT+TGG | - | chr3.1:75355540-75355559 | MS.gene049387:intron | 25.0% |
| AAAAAAAAATAGTTGGCGGT+TGG | + | chr3.1:75356483-75356502 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr3.1:75355999-75356018 | MS.gene049387:intron | 30.0% | |
| ACAATGATAATACCTCAGAT+TGG | - | chr3.1:75355641-75355660 | MS.gene049387:intron | 30.0% | |
| CTCTTGGTTTATATAACTAG+TGG | - | chr3.1:75356022-75356041 | MS.gene049387:intron | 30.0% | |
| TATATCTTCAACCAAAAGAG+AGG | + | chr3.1:75356545-75356564 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCTAATATGCTTT+AGG | - | chr3.1:75355934-75355953 | MS.gene049387:intron | 30.0% |
| ! | GATATATCTTGTTACTTGAG+TGG | - | chr3.1:75356559-75356578 | MS.gene049387:CDS | 30.0% |
| ! | TTTCATTGGTTGTGTCTAAT+TGG | - | chr3.1:75356735-75356754 | MS.gene049387:CDS | 30.0% |
| !! | AAAGAGCATCATTCACAAAT+TGG | + | chr3.1:75356168-75356187 | None:intergenic | 30.0% |
| !! | CTTTGAAATCTAATGTTGAG+AGG | - | chr3.1:75355612-75355631 | MS.gene049387:intron | 30.0% |
| AAGCCATCCTAAATGATAAC+AGG | + | chr3.1:75356453-75356472 | None:intergenic | 35.0% | |
| ATATAAACCAAGAGCCTGTT+TGG | + | chr3.1:75356016-75356035 | None:intergenic | 35.0% | |
| ATGCCTGTTATCATTTAGGA+TGG | - | chr3.1:75356447-75356466 | MS.gene049387:intron | 35.0% | |
| ATTGAGGTAGCATTTGAGAA+AGG | + | chr3.1:75356342-75356361 | None:intergenic | 35.0% | |
| CCTTCACAAATTAGACACAT+TGG | + | chr3.1:75356235-75356254 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCAAC+TGG | - | chr3.1:75355728-75355747 | MS.gene049387:intron | 35.0% | |
| GTGAATGCCTGTTATCATTT+AGG | - | chr3.1:75356443-75356462 | MS.gene049387:intron | 35.0% | |
| TAAACAGAAATGGTCCATAG+TGG | + | chr3.1:75356078-75356097 | None:intergenic | 35.0% | |
| TATCAGATACGGAGATTAAC+AGG | + | chr3.1:75354966-75354985 | None:intergenic | 35.0% | |
| TCATCACTACTTTATACCAC+TGG | + | chr3.1:75356127-75356146 | None:intergenic | 35.0% | |
| TCATCACTACTTTATGCTAC+TGG | + | chr3.1:75355969-75355988 | None:intergenic | 35.0% | |
| TCGTCACTACTTTATACTAC+TGG | + | chr3.1:75356203-75356222 | None:intergenic | 35.0% | |
| ! | CCAATGTGTCTAATTTGTGA+AGG | - | chr3.1:75356232-75356251 | MS.gene049387:intron | 35.0% |
| ! | TGTGTCTAATTTGTGAAGGA+TGG | - | chr3.1:75356236-75356255 | MS.gene049387:intron | 35.0% |
| !! | GAGATTGAGAGTATCAGATA+CGG | + | chr3.1:75354977-75354996 | None:intergenic | 35.0% |
| AAATTTAGGGGTCCAATCTG+AGG | + | chr3.1:75355656-75355675 | None:intergenic | 40.0% | |
| ACGGAGATTAACAGGAGTTA+GGG | + | chr3.1:75354958-75354977 | None:intergenic | 40.0% | |
| AGAAATGGTCCATAGTGGTA+TGG | + | chr3.1:75356073-75356092 | None:intergenic | 40.0% | |
| AGCAACGGATGAATTTGACA+TGG | + | chr3.1:75355074-75355093 | None:intergenic | 40.0% | |
| CATTCACAAATTGGTCACAG+TGG | + | chr3.1:75356159-75356178 | None:intergenic | 40.0% | |
| CCATTTCTGTTTATCCAAGC+AGG | - | chr3.1:75356085-75356104 | MS.gene049387:intron | 40.0% | |
| CCTGCTTGGATAAACAGAAA+TGG | + | chr3.1:75356088-75356107 | None:intergenic | 40.0% | |
| CTCTTGGTTCATATAACCAG+TGG | - | chr3.1:75356108-75356127 | MS.gene049387:intron | 40.0% | |
| GATATAGGGTCTGTTTGGAT+TGG | - | chr3.1:75355706-75355725 | MS.gene049387:intron | 40.0% | |
| GATTCGATATAGGGTCTGTT+TGG | - | chr3.1:75355701-75355720 | MS.gene049387:intron | 40.0% | |
| GCATCTTCACATAGAGCTTA+GGG | + | chr3.1:75355406-75355425 | None:intergenic | 40.0% | |
| GGTAGCATTTGAGAAAGGAT+AGG | + | chr3.1:75356337-75356356 | None:intergenic | 40.0% | |
| TACGGAGATTAACAGGAGTT+AGG | + | chr3.1:75354959-75354978 | None:intergenic | 40.0% | |
| TGCATCTTCACATAGAGCTT+AGG | + | chr3.1:75355407-75355426 | None:intergenic | 40.0% | |
| TGTTGAACAAGCTGCAGTTA+GGG | - | chr3.1:75355247-75355266 | MS.gene049387:intron | 40.0% | |
| TGTTTATCCAAACAGGCTCT+TGG | - | chr3.1:75356006-75356025 | MS.gene049387:intron | 40.0% | |
| TTGTTGAACAAGCTGCAGTT+AGG | - | chr3.1:75355246-75355265 | MS.gene049387:intron | 40.0% | |
| ! | ATTTTCCACAGTTGGAGCAA+CGG | + | chr3.1:75355089-75355108 | None:intergenic | 40.0% |
| ! | CTATCAAGCGTTTTCTTGTG+AGG | - | chr3.1:75355219-75355238 | MS.gene049387:intron | 40.0% |
| ! | GTCTAATTTGTGAAGGATGG+TGG | - | chr3.1:75356239-75356258 | MS.gene049387:intron | 40.0% |
| AATGGAGGTCGTAACAAGCA+TGG | - | chr3.1:75355042-75355061 | MS.gene049387:intron | 45.0% | |
| ACGTTCAAGCGTAGAAATGG+AGG | - | chr3.1:75355027-75355046 | MS.gene049387:intron | 45.0% | |
| ATATGAACCAAGAGCCTGCT+TGG | + | chr3.1:75356102-75356121 | None:intergenic | 45.0% | |
| CAGACGTTCAAGCGTAGAAA+TGG | - | chr3.1:75355024-75355043 | MS.gene049387:intron | 45.0% | |
| CTGTGGAAAATGCTGTCCTA+AGG | - | chr3.1:75355098-75355117 | MS.gene049387:intron | 45.0% | |
| GGATGAATTTGACATGGCCA+CGG | + | chr3.1:75355068-75355087 | None:intergenic | 45.0% | |
| TATAGCGTGCCATACCACTA+TGG | - | chr3.1:75356061-75356080 | MS.gene049387:intron | 45.0% | |
| TATCCACTCTCACGTTGTGA+GGG | - | chr3.1:75355445-75355464 | MS.gene049387:intron | 45.0% | |
| TGTTTATCCAAGCAGGCTCT+TGG | - | chr3.1:75356092-75356111 | MS.gene049387:intron | 45.0% | |
| ! | AGGACAGCATTTTCCACAGT+TGG | + | chr3.1:75355097-75355116 | None:intergenic | 45.0% |
| AACGTGAGAGTGGATAGCAC+AGG | + | chr3.1:75355441-75355460 | None:intergenic | 50.0% | |
| ACAGCGTTTCATTAGGCGCA+GGG | - | chr3.1:75355505-75355524 | MS.gene049387:intron | 50.0% | |
| AGCCTCCACAGCGTTTCATT+AGG | - | chr3.1:75355498-75355517 | MS.gene049387:intron | 50.0% | |
| AGCTGCAGTTAGGGATGTTC+AGG | - | chr3.1:75355256-75355275 | MS.gene049387:intron | 50.0% | |
| CAGGAGTTAGGGATTCCGAT+CGG | + | chr3.1:75354947-75354966 | None:intergenic | 50.0% | |
| CTATCCACTCTCACGTTGTG+AGG | - | chr3.1:75355444-75355463 | MS.gene049387:intron | 50.0% | |
| TTCATCCGTTGCTCCAACTG+TGG | - | chr3.1:75355081-75355100 | MS.gene049387:intron | 50.0% | |
| !! | TTTTGAAGGATGACGCACCC+AGG | - | chr3.1:75356771-75356790 | MS.gene049387:intron | 50.0% |
| CACAGCGTTTCATTAGGCGC+AGG | - | chr3.1:75355504-75355523 | MS.gene049387:intron | 55.0% | |
| CGCCTAATGAAACGCTGTGG+AGG | + | chr3.1:75355503-75355522 | None:intergenic | 55.0% | |
| CTGCGCCTAATGAAACGCTG+TGG | + | chr3.1:75355506-75355525 | None:intergenic | 55.0% | |
| TGACCCTCACAACGTGAGAG+TGG | + | chr3.1:75355451-75355470 | None:intergenic | 55.0% | |
| ! | TCAGATCTCGCACTGACAGG+AGG | - | chr3.1:75355468-75355487 | MS.gene049387:intron | 55.0% |
| GGTCGTAACAAGCATGGCCG+TGG | - | chr3.1:75355048-75355067 | MS.gene049387:intron | 60.0% | |
| ! | GGGTCAGATCTCGCACTGAC+AGG | - | chr3.1:75355465-75355484 | MS.gene049387:intron | 60.0% |
| AAGGATGACGCACCCAGGCC+CGG | - | chr3.1:75356776-75356795 | MS.gene049387:intron | 65.0% | |
| GAGGAGCTCCTGGTCCAGCA+GGG | + | chr3.1:75356823-75356842 | None:intergenic | 65.0% | |
| AGCAGGGCGTGGGGCTTGAC+CGG | + | chr3.1:75356807-75356826 | None:intergenic | 70.0% | |
| CTCCTGGTCCAGCAGGGCGT+GGG | + | chr3.1:75356817-75356836 | None:intergenic | 70.0% | |
| GGAGGAGCTCCTGGTCCAGC+AGG | + | chr3.1:75356824-75356843 | None:intergenic | 70.0% | |
| TCCTGGTCCAGCAGGGCGTG+GGG | + | chr3.1:75356816-75356835 | None:intergenic | 70.0% | |
| GCAGGGCGTGGGGCTTGACC+GGG | + | chr3.1:75356806-75356825 | None:intergenic | 75.0% | |
| GCTCCTGGTCCAGCAGGGCG+TGG | + | chr3.1:75356818-75356837 | None:intergenic | 75.0% | |
| GGTCAAGCCCCACGCCCTGC+TGG | - | chr3.1:75356806-75356825 | MS.gene049387:intron | 75.0% | |
| !! | GCACGGGCTGGAGGAGCTCC+TGG | + | chr3.1:75356833-75356852 | None:intergenic | 75.0% |
| !! | TGGGGCTTGACCGGGCTGGC+CGG | + | chr3.1:75356798-75356817 | None:intergenic | 75.0% |
| ! | GCCCCACGCCCTGCTGGACC+AGG | - | chr3.1:75356812-75356831 | MS.gene049387:intron | 80.0% |
| ! | GGCGTGGGGCTTGACCGGGC+TGG | + | chr3.1:75356802-75356821 | None:intergenic | 80.0% |
| !!! | GGGGCTTGACCGGGCTGGCC+GGG | + | chr3.1:75356797-75356816 | None:intergenic | 80.0% |
| !!! | TGACCGGGCTGGCCGGGCCT+GGG | + | chr3.1:75356791-75356810 | None:intergenic | 80.0% |
| !!! | TTGACCGGGCTGGCCGGGCC+TGG | + | chr3.1:75356792-75356811 | None:intergenic | 80.0% |
| ! | GCACCCAGGCCCGGCCAGCC+CGG | - | chr3.1:75356785-75356804 | MS.gene049387:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75354934 | 75356856 | 75354934 | ID=MS.gene049387 |
| chr3.1 | mRNA | 75354934 | 75356856 | 75354934 | ID=MS.gene049387.t1;Parent=MS.gene049387 |
| chr3.1 | exon | 75356854 | 75356856 | 75356854 | ID=MS.gene049387.t1.exon1;Parent=MS.gene049387.t1 |
| chr3.1 | CDS | 75356854 | 75356856 | 75356854 | ID=cds.MS.gene049387.t1;Parent=MS.gene049387.t1 |
| chr3.1 | exon | 75356671 | 75356763 | 75356671 | ID=MS.gene049387.t1.exon2;Parent=MS.gene049387.t1 |
| chr3.1 | CDS | 75356671 | 75356763 | 75356671 | ID=cds.MS.gene049387.t1;Parent=MS.gene049387.t1 |
| chr3.1 | exon | 75356494 | 75356578 | 75356494 | ID=MS.gene049387.t1.exon3;Parent=MS.gene049387.t1 |
| chr3.1 | CDS | 75356494 | 75356578 | 75356494 | ID=cds.MS.gene049387.t1;Parent=MS.gene049387.t1 |
| chr3.1 | exon | 75356264 | 75356397 | 75356264 | ID=MS.gene049387.t1.exon4;Parent=MS.gene049387.t1 |
| chr3.1 | CDS | 75356264 | 75356397 | 75356264 | ID=cds.MS.gene049387.t1;Parent=MS.gene049387.t1 |
| chr3.1 | exon | 75354934 | 75355011 | 75354934 | ID=MS.gene049387.t1.exon5;Parent=MS.gene049387.t1 |
| chr3.1 | CDS | 75354934 | 75355011 | 75354934 | ID=cds.MS.gene049387.t1;Parent=MS.gene049387.t1 |
| Gene Sequence |
| Protein sequence |
